CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP022529	Labrenzia sp. VG12 chromosome, complete genome	1 crisprs	csa3,WYL,cas3,DEDDh	0	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP022529_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022529_1

1186838-1186956

Orphan

Consensus_repeat	Method
TCGTCGTGACCAAGCTCGGCTTCGGCATGCTTGTCGTCGTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP022529_1

>merge|NZ_CP022529|1|1186838-1186956|CRISPRCasFinder
TCGTCGTGACCATGCTCGGCTTCGGCATGCTTGTCGTCGTCATGCCCATGATCATCGTGGTCGGCATGTTCTTCATGATCGTCATGACCATGTTCAGCTTCCGCATGGTCGCCATGTCC

>NZ_CP022529|1|1|1186838-1186956|CRISPRCasFinder
TCGTCGTGACCATGCTCGGCTTCGGCATGCTTGTCGTCGTC	ATGCCCATGATCATCGTGGTCGGCATGTTCTTCATGA
TCGTCATGACCATGTTCAGCTTCCGCATGGTCGCCATGTCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022529.1\|WP_094070673.1\|1182537_1183095_+\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|235782
NZ_CP022529.1\|WP_094070676.1\|1187545_1188406_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274064
NZ_CP022529.1\|WP_094070682.1\|1191668_1192742_+\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|131215
NZ_CP022529.1\|WP_094070672.1\|1178644_1178794_-\|DUF1127-domain-containing-protein	unknown	unknown	gnl\|CDD\|227744
NZ_CP022529.1\|WP_094070679.1\|1190032_1190317_+\|1,2-phenylacetyl-CoA-epoxidase-subunit-B	unknown	unknown	gnl\|CDD\|237504
NZ_CP022529.1\|WP_094070670.1\|1176216_1177632_-\|methylenetetrahydrofolate--tRNA-(uracil(54)--C(5))-methyltransferase-(FADH(2)-oxidizing)-TrmFO	unknown	unknown	gnl\|CDD\|235416
NZ_CP022529.1\|WP_094074537.1\|1179034_1181908_-\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NZ_CP022529.1\|WP_094070681.1\|1191096_1191609_+\|phenylacetate-CoA-oxygenase-subunit-PaaJ	unknown	unknown	gnl\|CDD\|131214
NZ_CP022529.1\|WP_094070671.1\|1177901_1178051_-\|DUF1127-domain-containing-protein	unknown	unknown	gnl\|CDD\|368980
NZ_CP022529.1\|WP_094070680.1\|1190316_1191093_+\|phenylacetate-CoA-oxygenase-subunit-PaaC	unknown	unknown	gnl\|CDD\|368300
NZ_CP022529.1\|WP_094070684.1\|1194994_1196305_-\|phenylacetate--CoA-ligase	unknown	unknown	gnl\|CDD\|131210
NZ_CP022529.1\|WP_094070674.1\|1183143_1183620_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022529.1\|WP_094070683.1\|1192777_1194820_+\|phenylacetic-acid-degradation-bifunctional-protein-PaaZ	unknown	unknown	gnl\|CDD\|236931
NZ_CP022529.1\|WP_094070675.1\|1184110_1186105_+\|L,D-transpeptidase-family-protein	unknown	unknown	gnl\|CDD\|225536
NZ_CP022529.1\|WP_094070678.1\|1189533_1190016_+\|DUF3291-domain-containing-protein	unknown	unknown	gnl\|CDD\|378694
NZ_CP022529.1\|WP_094070669.1\|1174917_1175295_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226260
NZ_CP022529.1\|WP_157738719.1\|1182227_1182515_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022529.1\|WP_094074536.1\|1175321_1176173_+\|squalene/phytoene-synthase-family-protein	unknown	unknown	gnl\|CDD\|366130
NZ_CP022529.1\|WP_094070685.1\|1196340_1196766_-\|hydroxyphenylacetyl-CoA-thioesterase-PaaI	unknown	unknown	gnl\|CDD\|131339
NZ_CP022529.1\|WP_094070677.1\|1188534_1189527_+\|1,2-phenylacetyl-CoA-epoxidase-subunit-A	unknown	unknown	gnl\|CDD\|184320

Protein	Function_ID	Function_description	E-value
NZ_CP022529.1\|WP_094070673.1\|1182537_1183095_+\|single-stranded-DNA-binding-protein	gnl\|CDD\|235782	PRK06341, PRK06341, single-stranded DNA-binding protein; Provisional.	7.26763e-83
NZ_CP022529.1\|WP_094070676.1\|1187545_1188406_+\|hypothetical-protein	gnl\|CDD\|274064	TIGR02277, Transcriptional_repressor_PaaX, phenylacetic acid degradation operon negative regulatory protein PaaX. This transcriptional regulator is always found in association with operons believed to be involved in the degradation of phenylacetic acid. The gene product has been shown to bind to the promoter sites and repress their transcription. [Regulatory functions, DNA interactions].	9.44564e-59
NZ_CP022529.1\|WP_094070682.1\|1191668_1192742_+\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	gnl\|CDD\|131215	TIGR02160, 12-phenylacetyl-CoA_epoxidase_subunit_E, phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA. [Energy metabolism, Other].	5.6621e-132
NZ_CP022529.1\|WP_094070672.1\|1178644_1178794_-\|DUF1127-domain-containing-protein	gnl\|CDD\|227744	COG5457, COG5457, Uncharacterized conserved small protein [Function unknown].	3.26153e-08
NZ_CP022529.1\|WP_094070679.1\|1190032_1190317_+\|1,2-phenylacetyl-CoA-epoxidase-subunit-B	gnl\|CDD\|237504	PRK13781, paaB, phenylacetate-CoA oxygenase subunit PaaB; Provisional.	7.82452e-65
NZ_CP022529.1\|WP_094070670.1\|1176216_1177632_-\|methylenetetrahydrofolate--tRNA-(uracil(54)--C(5))-methyltransferase-(FADH(2)-oxidizing)-TrmFO	gnl\|CDD\|235416	PRK05335, PRK05335, tRNA (uracil-5-)-methyltransferase Gid; Reviewed.	0
NZ_CP022529.1\|WP_094070671.1\|1177901_1178051_-\|DUF1127-domain-containing-protein	gnl\|CDD\|368980	pfam06568, DUF1127, Domain of unknown function (DUF1127). This family is found in several hypothetical bacterial proteins. In some cases it represents it represents the C-terminal region whereas in others it represents the whole sequence.	7.07477e-08
NZ_CP022529.1\|WP_094070681.1\|1191096_1191609_+\|phenylacetate-CoA-oxygenase-subunit-PaaJ	gnl\|CDD\|131214	TIGR02159, Putative_12-phenylacetyl-CoA_epoxidase_subunit_D, phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA. [Energy metabolism, Other].	4.01663e-60
NZ_CP022529.1\|WP_094074537.1\|1179034_1181908_-\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NZ_CP022529.1\|WP_094070684.1\|1194994_1196305_-\|phenylacetate--CoA-ligase	gnl\|CDD\|131210	TIGR02155, Phenylacetate-coenzyme_A_ligase, phenylacetate-CoA ligase. Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. [Energy metabolism, Other].	0
NZ_CP022529.1\|WP_094070680.1\|1190316_1191093_+\|phenylacetate-CoA-oxygenase-subunit-PaaC	gnl\|CDD\|368300	pfam05138, PaaA_PaaC, Phenylacetic acid catabolic protein. This family includes proteins such as PaaA and PaaC that are part of a catabolic pathway of phenylacetic acid. These proteins may form part of a dioxygenase complex.	2.43123e-127
NZ_CP022529.1\|WP_094070683.1\|1192777_1194820_+\|phenylacetic-acid-degradation-bifunctional-protein-PaaZ	gnl\|CDD\|236931	PRK11563, PRK11563, bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional.	0
NZ_CP022529.1\|WP_094070675.1\|1184110_1186105_+\|L,D-transpeptidase-family-protein	gnl\|CDD\|225536	COG2989, COG2989, Uncharacterized protein conserved in bacteria [Function unknown].	4.17202e-158
NZ_CP022529.1\|WP_094070669.1\|1174917_1175295_+\|hypothetical-protein	gnl\|CDD\|226260	COG3737, COG3737, Uncharacterized conserved protein [Function unknown].	1.66752e-57
NZ_CP022529.1\|WP_094070677.1\|1188534_1189527_+\|1,2-phenylacetyl-CoA-epoxidase-subunit-A	gnl\|CDD\|184320	PRK13778, paaA, phenylacetate-CoA oxygenase subunit PaaA; Provisional.	0
NZ_CP022529.1\|WP_094074536.1\|1175321_1176173_+\|squalene/phytoene-synthase-family-protein	gnl\|CDD\|366130	pfam00494, SQS_PSY, Squalene/phytoene synthase.	1.42614e-50
NZ_CP022529.1\|WP_094070685.1\|1196340_1196766_-\|hydroxyphenylacetyl-CoA-thioesterase-PaaI	gnl\|CDD\|131339	TIGR02286, Acyl-coenzyme_A_thioesterase_PaaI, phenylacetic acid degradation protein PaaD. This member of the domain family TIGR00369 (which is, in turn, a member of the pfam03061 thioesterase superfamily) is nearly always found adjacent to other genes of the phenylacetic acid degradation pathway. Its function is currently unknown, but a role as a thioesterase is not inconsistent with the proposed overall pathway. Sequences scoring between trusted and noise include those from archaea and other species not known to catabolize phenylacetic acid and which are not adjacent to other genes potentially involved with such a pathway.	1.31035e-46
NZ_CP022529.1\|WP_094070678.1\|1189533_1190016_+\|DUF3291-domain-containing-protein	gnl\|CDD\|378694	pfam11695, DUF3291, Domain of unknown function (DUF3291). This bacterial family of proteins has no known function.	2.32809e-61

>NZ_CP022529.1|WP_094070675.1|1184110_1186105_+|L,D-transpeptidase-family-protein
MRARNKRDFGRERDTGLTLPERRRGTVFGQSLKVALTASVLATGFSVTTVDTASAQNFFQRLFNPEQQRRAQEQQRQEQLRQQATRVKVSAPRYLNYTADAWKKVSLAELSEKKTAEVQPSETDGTDLETQSAQTDAQPVAPLVLTAFDEARPALKDMTLTTLPEVGEALIAYYREHPDFVWIEDGKATVKAAELRRALADAAQFALNPADYFVALPATAGLEGEARDAALMRFEMELSAAALTYVLDATRGRVDPNRISQYHDLPRHEVDLVAALEILNGSGNVGANLASHQPQNAHFKALKEELARLRAEDEEADQIVIAPGTFLKAGKSSPEMKNIVAAIAKIASEELKTTHAETLAAYVDGEVYTPELVALVKSFQKEAKLTPDGIVGKNTIKAMVGETNAAKIAKVELAMERSRWIPEELGERKVFINQAAFTATYSAPGEDPLQMRVVVGKKSNQTNFFYDKIEIVEYNPYWGVPYSIIVNEMLPKLAQDPSYLDRAGYEVSTPGGRKVSSASVNWYAVASKQQSINVRQYPGRSNALGEVKILFPNKHHIYMHDTPAKSLFKKDVRAFSHGCVRLHDPKAMAAAVLGKSKDYVTSRIAAGQNEQEKVTGDIPVYVSYFTAWPDLDGSIAFYSDIYDRDRHLLKALEKTETLRAKARS
>NZ_CP022529.1|WP_094070674.1|1183143_1183620_-|hypothetical-protein
MPFQFNVGDHVSPVLKYKKFNASQYSQLKWARSKLFKMVQNNPSCNAYFRTLPKGRSLTSLINDSRIWVNYGPTISPLHGEIHAPSGEIAVGDRAFNMGRWMVLATLIHELAHYNGAPITGGNTSAEEAVYHCGLGTPKEYYGGVDDPRTPYDPTIGG
>NZ_CP022529.1|WP_094070673.1|1182537_1183095_+|single-stranded-DNA-binding-protein
MAGSVNKVILVGNLGADPEIRRTQDGRPIANLRIATSESWRDRNSGERREKTEWHRVVIFNEGLCKVAESYLRKGSKVYLEGQLQTRKWQDQSGQDRYSTEVVLQGFNSNLTMLDGRGEGAGAGGGLPDYGNDSQGGGGGGFGGGSGGSFGGGGSGGGYGSGSSGGGYGGPSGGGGGPMDDEIPF
>NZ_CP022529.1|WP_157738719.1|1182227_1182515_+|hypothetical-protein
MSLVVLTKKLTQGNKSGANCNEVQSGVVVLLPKLLPRQGLSVLRPVLPCGKWVKVPENEGEAVGGPLGFWFLAARLAAQGNKIMNGRIAEAVRQR
>NZ_CP022529.1|WP_094074537.1|1179034_1181908_-|excinuclease-ABC-subunit-UvrA
MLSIRGAREHNLKGVDLDLPRNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLEMMQKPDVDQIDGLSPAISIEQKTTSRNPRSTVGTVTEIYDYMRLLFARVGIPYSPATGLPIVSQTVSQMVDRVLALDEGARLYLLAPMVRGRKGEYRKELAELMKKGFQRVKIDGTFYEIADAPALDKKFKHDIDVVVDRLVVRDDIAGRLADSLETALKLADGIAIAEFADKTDENGDPERLIFSEKFACPVSGFTIAEIEPRLFSFNNPFGACPTCDGLGTTLAFEEDLVVPDHSLSLREGAVLPWAKTGSTSPYYAQTLEALCSHFDVSMATPWKDLPAEVQDAILHGTGKTAIEFVYDDGVRSYRTEKTFEGVIGNIERRWRETESTWVREELARFQSDHACPACNGFRLKPEALAVKIAGKHIGEVTEYSIRQASDWFETLPGQLNEKQTEIAGRILKEIRERLKFLNDVGLEYLTLSRASGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNARLLETLKHLRDLGNTVIVVEHDEDAVLTADYVVDVGPGAGVHGGEVVAKGTPAEVMANPASLTGQYLSGAMMISRADERRKINKKRQISVRGARGNNLKDLDVDVPLSTFTCVTGVSGGGKSTFLVDTLYKAAARRLNGARDNPAPHDRIEGLEVLDKVIDIDQSPIGRTPRSNPATYTGAFTPIREWFAGMPEAKARGYQPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVTCDVCKGKRYNRETLEVEFKGKSIADVLDMTVEEAAEFFSAVPSVRDKMETLARVGLGYIKVGQQATTLSGGEAQRVKLAKELSKRSTGRTLYILDEPTTGLHFHDVAKLLDVLHELVDQGNTVLVIEHNLEVIKTADWIIDLGPEGGDGGGTVVAAGRPEDVAEVQASYTGQFLQELLQRRPQRAPDAAE
>NZ_CP022529.1|WP_094070672.1|1178644_1178794_-|DUF1127-domain-containing-protein
MFDTVRQRYNNWVSYRRAVDELSRLSQRELADLGISRSDIKFVARRHNG
>NZ_CP022529.1|WP_094070671.1|1177901_1178051_-|DUF1127-domain-containing-protein
MIDTVVRKFNNWKRFRQTYDELSNLSNRELNDLGIARGDIAHYARQSAK
>NZ_CP022529.1|WP_094070670.1|1176216_1177632_-|methylenetetrahydrofolate--tRNA-(uracil(54)--C(5))-methyltransferase-(FADH(2)-oxidizing)-TrmFO
MSPIHVIGGGLAGSEAAWQIAQAGLDVVLHEMRPVRKTDAHQTDGLAELVCSNSFRSDDSEQNAVGLIHHELRQLGSLIMACADAHQVPAGSALAVDRDGFSDAVTKALEDHPRVTIDRQEIAGLPPADWDKVIIATGPLTSPALSQAVLEKSGEDALAFFDAIAPIVHFDSVDLSKAWFQSRYDKVGPGGTGKDYLNCPMDKDQYEAFIDALLTGDTADFKEWEGTPYFDGCLPIEVMAARGRETLRHGPMKPMGLTNAHNPDVKAYAVVQLRQDNALGTLYNMVGFQTKLKYGAQADIFRMIPGLENAQFARLGGLHRNTFLNSPKVLDGSLQLKAAPRLRFAGQITGCEGYVESASVGCLAGLFSVMEANGREIIAPPETTAMGALLGHITGGHISRDDGAGKPSSFQPMNVNFGLFPPVEAPTKDETGKRLKGKDKARAKKLAMTSRAKTDFAVWQSKLGLKKEAAE
>NZ_CP022529.1|WP_094074536.1|1175321_1176173_+|squalene/phytoene-synthase-family-protein
MTTDFDHAADIVRRFDKDRYLSALLAPETHRSGLMALYAFSAEIARIRELVSEPLPGEMRLQWWRDLLEGTEHGAAASNPVANALLQTIDRYKLPKKGLVAMTEARVFDLYNDQMPSLNDLEGYAGETVSGVIQLACFVLNGGKDPETATAAGHAGVAYALTGLMRALPWHGSRRQMYLPKDVCERHNLDVETVFRAETTPELGAVLSELRSHVRHHLSRVQQAAGSVPPECDNAFLPLVLVEPFLKKLEAPRHDPLKQVIELSQLRRQWLLWRASGRALSRI
>NZ_CP022529.1|WP_094070669.1|1174917_1175295_+|hypothetical-protein
MEIRDAHFPGRAPLDAYGNGGFRFADMSHRGSLLCVPSGIYGWHLSSPEELSEEAFQRVFEEHEDIEVLLIGTGKDLRPLPQALKERFRAAGILADPMSTGAAVRTYNVLLSEDRAVATALLAVD
>NZ_CP022529.1|WP_094070676.1|1187545_1188406_+|hypothetical-protein
MFDIRDTSANHFLRPLPPKAAQLIVTIYGDIVEPRGGVLWIGDLITLCADFGVNESLVRTAVSRLVSKGQLKGEREGRRSFYGLTAAARKEYHLAADLFFGPAEADCDWILTLCTSAAEQSELLGSGFVQISGNMFMAANRPDRPRLGLPFRASVLADDTESLRELAFQAFRLKDLARDYALFSETFLDMQRLVSKTVPPKTALQYRLALVHAYRDIKLRDPRLPKTVLPDDWPGFAARTLFADLYRQLSVPADTFIGEHLFDRNGPLPVQPDAVRRRLETLSATS
>NZ_CP022529.1|WP_094070677.1|1188534_1189527_+|1,2-phenylacetyl-CoA-epoxidase-subunit-A
MYAQMVKTDADKVRDISEMSAEERAFQERIDRGEKIEPTDWMPEGYRKTLIRQIGQHAHSEIVGQLPEGNWITRAPTLERKAILLAKVQDEAGHGLYLYCAAETLGVSRDELIELLHAGKMKYSSIFNYPTLTWADIGAVGWLVDGAAIMNQVPLQRTSFGPYSRAMIRICKEESFHQRQGYDIMMKMAKGSEAQRRMAQDALNRFWYPSLMMFGPSDKDSVHSAQSMAWKIKINTNDELRQKFVDQTVPQAEYLGLSIPDDQLTWNEEKGGYDFSEPDWSEFFEVLKGNGPCNRERMNARVKAWEDGAWVRDGLMAHADKRAAAQQAAE
>NZ_CP022529.1|WP_094070678.1|1189533_1190016_+|DUF3291-domain-containing-protein
MSGFHIAELNVARLRYDINDPRIADFVNNLDRVNAAAERSEGFVWRLKDEGGTSVEMTREADPMVIPNLSVWTDVTSLENFVFKTVHKRIYDRRAEWFEVMDRMHFVMWPVPVGHQPSLEEARDRLDHYNKNGSSDQAFGWEHVPNANLWRTARCAGSAA
>NZ_CP022529.1|WP_094070679.1|1190032_1190317_+|1,2-phenylacetyl-CoA-epoxidase-subunit-B
MKKEWPLWEVFIRGQHGLNHRHVGSLHAPDAEMAIKNARDVYTRRKEGVSIWVVPSAQISASDPGAKDSLFEPSMDKIYRHPSFYDIPDDVGKM
>NZ_CP022529.1|WP_094070680.1|1190316_1191093_+|phenylacetate-CoA-oxygenase-subunit-PaaC
MTDKNDHIANDVLFEWLLRRGDTALVLGHRVSEWCGHSPVLEEDIALANIALDLIGQARMWLGLAGEVEGKGRGENELAYLRDAWDFRNLLLAEQPNGDFGKTMMRQFFIDVFQMQMLKALQGSTDPRIAAIAAKAGKEVAYHLDRSADLVIRLGDGTPESHQRMQTALDELWSYTGEMFASDAVDRAMAEAGLAPDPASLQAEWQATVQEVLTDATLILPESTFAHKGGLEGRHTEHLGHILAEMQFLQRAYPGATW
>NZ_CP022529.1|WP_094070681.1|1191096_1191609_+|phenylacetate-CoA-oxygenase-subunit-PaaJ
MLVTTNTVWQWLGEIPDPEIPVLSLTDLGVIRDVHWQEETLVVTVTPTYSGCPATAVINLDIETKLRSHGITNLRLEQQLSPPWTTDWLTDRGREKLRAYGIAPPVRETGAPSASKGRIARLTGQSDVVVACPRCGSQDTEKVSQFGSTPCKAAYRCRACLEPFDYFKCH
>NZ_CP022529.1|WP_094070682.1|1191668_1192742_+|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein
MSRFHALTVTEVTPDTRDSVVVTLQPTPGEEELFRFSQGQYLTFRRDFDGHEVRRCYSICAGTEEGALKVGIKRVDGGAFSCWANENLVVGESVEAMPPLGSFNAPIEPERARFYVGFAGGSGITPILSILKTVLAREPQSQFTLVYANRQVSSIMFREELEDLKNRYLGRLHVIHILKSDAQDTELFSGRIDEEKLAELFETLIDPKDIDLAFLCGPHGMMETVRESLEAGGVDTDRIKQELFKSDQPGRLPPKLRPEVVDGKAKDADLKLTIDGTTRDIHMEPGETILEAAHRNNIDAPYSCCAGVCSTCRGKVLEGEVEMAANHALEDDEIRDGYVLTCQSRPLTKRLVVTYDA
>NZ_CP022529.1|WP_094070683.1|1192777_1194820_+|phenylacetic-acid-degradation-bifunctional-protein-PaaZ
MTAHPQKVRVLESYLAGAWRPGKADGKPLLDAATGAPVATIDASGLDLAEALTWGRDKGGKELRKMTYHERALMLKTLAQALMDKKELFYQESFATGATRKDGWIDIEGGIGTMFAYSSKARREMPNTKVFVEGAVELLSRDNSFSGQHVLTPLRGIAIHINAFNFPCWGMLEKIAPALIAGVPCLVKPASQTAYLTELMVREILATGILPEGALQLLCGSAGDLVDHVTGQDVVTFTGSAATGQMLRQNRAIVQNSTRFSMEADSLNAAVLGPDVTPEDPEFDLFVKEVAREVTVKAGQKCTAIRRVIVPRKSIEAVSEALQKRFDRLVIGDPRDDTVTMGPLASRDQVTEVEDRIADLKAEAELLSRNPAGVSSDGAFAGPVLLHCADPLKAEAVHSVEAFGPVATLMPYDTVDEAVELTHKGKGSLVASVFTNDPGVAEEAVLGMAPFHGRVMIGNRMSARSSTGHGSPLPMLVHGGPGRAGGGEELGGIRSVKHYMQRTAVQGAPHLLGAVTGRWISGSPGRQDTRHPFRKSLAELKIGDQLVTGSRTVSLDDIEHFAEFTGDTFYAHMNQEAAERNPFFEGRVAHGYLIVSFAAGLFVDPDEGPVLANYGVDNLRFMTPVNAGDTLKVQLTAKEISPRITADYGEVRWDCLVSNQKDEPVAQYDVLTLVAKDWPA
>NZ_CP022529.1|WP_094070684.1|1194994_1196305_-|phenylacetate--CoA-ligase
MENLAPLPGDLEPIETASRDELSALQLSRLQWSLAHAYENVPLFRKRFDEKGIHPSDLNSLSDLSKFPFTTKTDLRDHYPFGMFAVPRDKIVRVHASSGTTGKPTVVGYTANDIDMWAHLVARSIRASGGRPGDIIHIAYGYGLFTGGLGAHYGAEKMGCTVVPVSGGMTERQVTLIQDFKPRIIMVTPSYLLSILDEFRRQGIDPRETSLATGIFGAEPWTNAMRQEIEQAFDMHAVDIYGLSEILGPGVANECVETKDGLHIWEDHFYPEIIDPQTGDVLPDGEIGELVFTTLTKEGLPMVRYRTRDLTRLLPGTARSMRRMEKITGRSDDMIILRGVNVFPTQIEEQILKCEGLSPHFQIELSKKDRLDVMTVHVEALPAAAGSDAREASARELAHHIKSVVGVSARIDVTEPGDVERSAGKAKRVVDNRPKE
>NZ_CP022529.1|WP_094070685.1|1196340_1196766_-|hydroxyphenylacetyl-CoA-thioesterase-PaaI
MTPEELAKACAQRMWSQDTASQNLGIALDQVEAGRATMSMTVTKAMTNGHGICHGGYIFTLADSAFAFACNTYNQVTVAQHCDVTFLAPAHLDDRLTAEARERNRRGRSGLYDVTVSNQAGDVIAEFRGNSRTTKGSILPE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1160782 : 1172259

uncultured_Mediterranean_phage(81.82%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_094070655.1\|1160782_1161802_+	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	1.4e-23	39.5
WP_094070656.1\|1161813_1162653_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	2.1e-33	34.7
WP_094070657.1\|1162645_1163344_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	5.7e-45	51.5
WP_094070658.1\|1163343_1164483_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	5.5e-29	35.4
WP_094070659.1\|1164610_1164835_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	4.3e-10	75.6
WP_094070660.1\|1164876_1165329_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_094070661.1\|1165325_1166126_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	2.4e-55	48.6
WP_094070662.1\|1166196_1167477_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	8.8e-100	45.7
WP_094074535.1\|1167631_1168390_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	2.3e-39	39.3
WP_094070663.1\|1168410_1169103_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	4.7e-23	38.5
WP_094070664.1\|1169331_1170753_+	M23 family metallopeptidase	O03937	Lactobacillus_phage	2.5e-10	34.8
WP_094070665.1\|1170807_1171680_-	ATP-binding protein	NA	NA	NA	NA
WP_094070666.1\|1171923_1172259_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	2.5e-14	42.4

DBSCAN-SWA_2

1624655 : 1681188

Agrobacterium_phage(22.22%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_094071016.1\|1624655_1627100_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.5e-177	42.6
WP_094074583.1\|1627112_1627445_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.3e-12	42.7
WP_094071017.1\|1627848_1628181_-	phasin family protein	NA	NA	NA	NA
WP_094071018.1\|1628790_1630479_+	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	5.9e-27	33.5
WP_094071019.1\|1630496_1631204_-	DnaJ domain-containing protein	NA	NA	NA	NA
WP_094074584.1\|1631200_1631947_-	hypothetical protein	NA	NA	NA	NA
WP_094074585.1\|1632037_1632574_-	DUF2306 domain-containing protein	NA	NA	NA	NA
WP_094071020.1\|1632766_1633372_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_094071021.1\|1633390_1633825_-	DUF1489 domain-containing protein	NA	NA	NA	NA
WP_094071022.1\|1633946_1634831_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_157738777.1\|1634935_1635481_+	hypothetical protein	NA	NA	NA	NA
WP_094071024.1\|1635926_1636682_+	DUF599 family protein	NA	NA	NA	NA
WP_157738779.1\|1636567_1637815_-	adenylate/guanylate cyclase domain-containing protein	A0A1B1IWY2	uncultured_Mediterranean_phage	1.3e-15	33.7
WP_094071025.1\|1637927_1638725_-	YdcF family protein	NA	NA	NA	NA
WP_094071026.1\|1639278_1639686_+\|protease	Clp protease ClpP	NA	NA	NA	NA
WP_094071027.1\|1639739_1640354_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	7.8e-30	37.1
WP_094071028.1\|1640534_1641383_-	adenylate/guanylate cyclase domain-containing protein	NA	NA	NA	NA
WP_094071029.1\|1641498_1641903_-	ACT domain-containing protein	NA	NA	NA	NA
WP_094071030.1\|1641916_1642504_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_094071031.1\|1642520_1643492_-	agmatinase	NA	NA	NA	NA
WP_094071032.1\|1643575_1644271_-	SDR family NAD(P)-dependent oxidoreductase	Q56AQ6	Bacillus_thuringiensis_phage	6.8e-30	38.6
WP_094071033.1\|1644327_1644711_-	cupin domain-containing protein	NA	NA	NA	NA
WP_094071034.1\|1644731_1645904_-	isovaleryl-CoA dehydrogenase	NA	NA	NA	NA
WP_094071035.1\|1645930_1646377_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_094071036.1\|1646382_1646826_-	PaaI family thioesterase	NA	NA	NA	NA
WP_094071037.1\|1646825_1647224_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_094071038.1\|1647314_1648025_-	glycoside hydrolase family 25 protein	A0A1U9WQS3	Geobacillus_phage	2.0e-16	30.5
WP_094071039.1\|1648079_1648502_-	glyoxalase	NA	NA	NA	NA
WP_094071040.1\|1648604_1648889_-	GTP cyclohydrolase	NA	NA	NA	NA
WP_094071041.1\|1648953_1649379_-	organic hydroperoxide resistance protein	NA	NA	NA	NA
WP_094071042.1\|1649513_1650254_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_157738781.1\|1650263_1650869_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_094071044.1\|1650919_1651360_+	DUF1330 domain-containing protein	NA	NA	NA	NA
WP_094071045.1\|1651381_1652797_-	magnesium transporter	NA	NA	NA	NA
WP_094071046.1\|1652980_1653325_-	hypothetical protein	NA	NA	NA	NA
WP_094071047.1\|1653317_1653806_-	hypothetical protein	NA	NA	NA	NA
WP_094071048.1\|1653910_1656676_-	DEAD/DEAH box helicase family protein	NA	NA	NA	NA
WP_157738784.1\|1656737_1657319_-	hypothetical protein	NA	NA	NA	NA
WP_094071050.1\|1657733_1658000_-	flagellar motor switch protein FliN	NA	NA	NA	NA
WP_094071051.1\|1658096_1658804_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA
WP_094071052.1\|1659030_1660989_+	HAMP domain-containing protein	NA	NA	NA	NA
WP_094071053.1\|1661180_1662041_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_094071054.1\|1662042_1662909_-	glycosyl transferase	A0A0R7EYR7	Diatraea_saccharalis_granulovirus	8.2e-09	34.8
WP_094071055.1\|1662918_1664139_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_094071056.1\|1664305_1664593_-	acylphosphatase	NA	NA	NA	NA
WP_094074586.1\|1664726_1665626_-	DMT family transporter	NA	NA	NA	NA
WP_094074587.1\|1666041_1667187_-	AAA family ATPase	NA	NA	NA	NA
WP_094074588.1\|1667176_1668001_-	RNA ligase family protein	R4T9D4	Halovirus	1.9e-07	23.6
WP_094071057.1\|1668356_1669007_-	HAD family hydrolase	NA	NA	NA	NA
WP_094071058.1\|1669099_1671112_-	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA
WP_094071059.1\|1671345_1671822_+	hypothetical protein	NA	NA	NA	NA
WP_094071060.1\|1671932_1672400_+	hypothetical protein	NA	NA	NA	NA
WP_094071061.1\|1672575_1672890_+	hypothetical protein	NA	NA	NA	NA
WP_094071062.1\|1672900_1673959_-\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_094071063.1\|1674031_1675564_-	acyl-CoA carboxylase subunit beta	NA	NA	NA	NA
WP_094071064.1\|1675913_1676864_+	OmpA family protein	NA	NA	NA	NA
WP_094074589.1\|1677152_1678577_+	circularly permuted type 2 ATP-grasp protein	NA	NA	NA	NA
WP_094071065.1\|1678584_1679535_+	alpha-E domain-containing protein	NA	NA	NA	NA
WP_094071066.1\|1679559_1680381_+	transglutaminase family protein	NA	NA	NA	NA
WP_094071067.1\|1680456_1681188_+\|protease	proteasome-type protease	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage