CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP022571	Prosthecochloris sp. GSB1 strain TY Vent = GSB1 = Ty-1 chromosome, complete genome	3 crisprs	csa3,cas6,cmr1gr7,cmr6gr7,cas10,cmr4gr7,cmr5gr11,cmr3gr5,DEDDh,cas3	0	5	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP022571_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022571_1

1281766-1281946

TypeIII

Consensus_repeat	Method
GGTCGCAATCCCCTGTAGCTAATCGGGTCTGTCTACTC	PILER-CR
CCCCTGTAGCTAATCGGGTCTGTCTAC	CRISPRCasFinder

2 spacers

cas6,cmr1gr7,cmr6gr7,cas10,cmr4gr7,cmr5gr11,cmr3gr5

The CRISPR arrays of NZ_CP022571_1

>merge|NZ_CP022571|1|1281766-1281946|PILER-CR,CRISPRCasFinder
CCCCTGTAGCTAATCGGGTCTGTCTACCGGTGGAGAGAGCGTTTTCTCGGTTGCGCGTAAAATGGTCGCAATCCCCTGTAGCTAATCGGGTCTGTCTACTCCTTTTGGGGAATTTGGGGAACTTCCCGACGCTTCGTTGGCGAGGTCGCAATCCCCTGTAGCTAATCGGGTCTGTCTACTC

>NZ_CP022571|1|1|1281766-1281946|PILER-CR
CCCCTGTAGCTAATCGGGTCTGTCTACCGGTGGAGAGA	GCGTTTTCTCGGTTGCGCGTAAAATGGTCGCAAT
CCCCTGTAGCTAATCGGGTCTGTCTACTCCTTTTGGGG	AATTTGGGGAACTTCCCGACGCTTCGTTGGCGAGGTCGCAAT
CCCCTGTAGCTAATCGGGTCTGTCTACTC

>NZ_CP022571|1|1|1281766-1281944|CRISPRCasFinder
CCCCTGTAGCTAATCGGGTCTGTCTAC	CGGTGGAGAGAGCGTTTTCTCGGTTGCGCGTAAAATGGTCGCAAT
CCCCTGTAGCTAATCGGGTCTGTCTAC	TCCTTTTGGGGAATTTGGGGAACTTCCCGACGCTTCGTTGGCGAGGTCGCAAT
CCCCTGTAGCTAATCGGGTCTGTCTAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022571.1\|WP_094082598.1\|1287500_1290428_+\|hypothetical-protein	cas10	cd09701_cas10_CAS-III-C	gnl\|CDD\|187832
NZ_CP022571.1\|WP_094082602.1\|1295705_1297109_+\|argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|179143
NZ_CP022571.1\|WP_094082603.1\|1297146_1299216_-\|carboxy-terminal-processing-peptidase	unknown	unknown	gnl\|CDD\|236873
NZ_CP022571.1\|WP_094082585.1\|1271988_1272897_-\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|378974
NZ_CP022571.1\|WP_150132330.1\|1283806_1285093_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022571.1\|WP_094082588.1\|1275543_1276464_+\|acetylglutamate-kinase	unknown	unknown	gnl\|CDD\|234869
NZ_CP022571.1\|WP_094082587.1\|1274230_1275514_+\|bifunctional-glutamate-N-acetyltransferase/amino-acid-acetyltransferase-ArgJ	unknown	unknown	gnl\|CDD\|376687
NZ_CP022571.1\|WP_150132329.1\|1282595_1283675_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022571.1\|WP_167375032.1\|1286421_1287504_+\|hypothetical-protein	cmr6gr7	mkCas0142_cmr6gr7_CAS-III-C	gnl\|CDD\|187857
NZ_CP022571.1\|WP_094082596.1\|1285319_1286432_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	cd09657_cmr1gr7_CAS-III-C	gnl\|CDD\|187788
NZ_CP022571.1\|WP_094082584.1\|1270658_1271984_-\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_CP022571.1\|WP_094082591.1\|1277966_1279175_+\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|234785
NZ_CP022571.1\|WP_094082599.1\|1290424_1291405_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	gnl\|CDD\|224255
NZ_CP022571.1\|WP_094082593.1\|1280684_1281680_-\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	mkCas0066_cas6_CAS-I:CAS-III	gnl\|CDD\|187890
NZ_CP022571.1\|WP_094082600.1\|1291415_1291808_+\|hypothetical-protein	cmr5gr11	mkCas0060_cmr5gr11_CAS-III-C	unknown
NZ_CP022571.1\|WP_094082590.1\|1277505_1277952_+\|arginine-repressor	unknown	unknown	gnl\|CDD\|224355
NZ_CP022571.1\|WP_094082589.1\|1276480_1277488_+\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|234835
NZ_CP022571.1\|WP_094082601.1\|1291804_1292668_+\|hypothetical-protein	cmr3gr5	mkCas0067_cmr3gr5_CAS-III-C	unknown
NZ_CP022571.1\|WP_094082586.1\|1273179_1274196_+\|N-acetyl-gamma-glutamyl-phosphate-reductase	unknown	unknown	gnl\|CDD\|234761
NZ_CP022571.1\|WP_094082592.1\|1279496_1280393_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP022571.1\|WP_094082598.1\|1287500_1290428_+\|hypothetical-protein	gnl\|CDD\|187832	cd09701, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, inactivated palm domain and Zn-ribbon; signature gene for type III.	5.20464e-133
NZ_CP022571.1\|WP_094082602.1\|1295705_1297109_+\|argininosuccinate-lyase	gnl\|CDD\|179143	PRK00855, PRK00855, argininosuccinate lyase; Provisional.	0
NZ_CP022571.1\|WP_094082603.1\|1297146_1299216_-\|carboxy-terminal-processing-peptidase	gnl\|CDD\|236873	PRK11186, PRK11186, carboxy terminal-processing peptidase.	0
NZ_CP022571.1\|WP_094082585.1\|1271988_1272897_-\|substrate-binding-domain-containing-protein	gnl\|CDD\|378974	pfam12849, PBP_like_2, PBP superfamily domain. This domain belongs to the periplasmic binding protein superfamily.	1.37115e-20
NZ_CP022571.1\|WP_094082588.1\|1275543_1276464_+\|acetylglutamate-kinase	gnl\|CDD\|234869	PRK00942, PRK00942, acetylglutamate kinase; Provisional.	2.19574e-144
NZ_CP022571.1\|WP_094082587.1\|1274230_1275514_+\|bifunctional-glutamate-N-acetyltransferase/amino-acid-acetyltransferase-ArgJ	gnl\|CDD\|376687	pfam01960, ArgJ, ArgJ family. Members of the ArgJ family catalyze the first EC:2.3.1.1 and fifth steps EC:2.3.1.35 in arginine biosynthesis.	0
NZ_CP022571.1\|WP_094082589.1\|1276480_1277488_+\|ornithine-carbamoyltransferase	gnl\|CDD\|234835	PRK00779, PRK00779, ornithine carbamoyltransferase; Provisional.	1.87719e-176
NZ_CP022571.1\|WP_094082596.1\|1285319_1286432_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	gnl\|CDD\|187788	cd09657, Cmr1_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	3.38797e-18
NZ_CP022571.1\|WP_094082584.1\|1270658_1271984_-\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.39837e-58
NZ_CP022571.1\|WP_094082591.1\|1277966_1279175_+\|argininosuccinate-synthase	gnl\|CDD\|234785	PRK00509, PRK00509, argininosuccinate synthase; Provisional.	0
NZ_CP022571.1\|WP_094082599.1\|1290424_1291405_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|224255	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	3.45673e-39
NZ_CP022571.1\|WP_094082593.1\|1280684_1281680_-\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	gnl\|CDD\|187890	cd09760, Cas6_III, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex.	2.83061e-11
NZ_CP022571.1\|WP_094082590.1\|1277505_1277952_+\|arginine-repressor	gnl\|CDD\|224355	COG1438, ArgR, Arginine repressor [Transcription].	9.86398e-36
NZ_CP022571.1\|WP_167375032.1\|1286421_1287504_+\|hypothetical-protein	gnl\|CDD\|187857	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily proteins.	2.61282e-11
NZ_CP022571.1\|WP_094082586.1\|1273179_1274196_+\|N-acetyl-gamma-glutamyl-phosphate-reductase	gnl\|CDD\|234761	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated.	3.24016e-154

>NZ_CP022571.1|WP_094082593.1|1280684_1281680_-|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6
MYASFASLSIARFRFTIEPTEEIRLPEYKGSALRGGFGYAFKRATCITRDRFCEPCILKSSCAYHRVFESKVPPDTSERLRLGGDAPHPFVIEPPLTEQRYFQPGDRLTFSLVLFGGAVGQLPFFVYAFMILGESFGIGKGRGRFRLLGVEDENGKQLYDNGNLSGGCEVRTAGEIMNSTADGSAELTLRFETPLRMKTAYGREKKGLVTGMGDPASVRMLLKSLHHRAFVLNQLYGEGVKEETYNGRMFSPVDGDLEVVRADTFWYDWERYSQRQQRRMRLGGVMGEVTLGGTLQRYMPLLRLGQYLHVGKGTGFGLGKYRIAGDAAGSA
>NZ_CP022571.1|WP_094082592.1|1279496_1280393_+|hypothetical-protein
MKKQFLVGAIALFVLLCHSSAFAAIGQFTGSWENTDSNTRGITKLVISENGGKVSLQAWGKCHPQDCDWGKVPAYLYAPSVSSNPMQNGRVISAMFDKGFSQTLLIVRPSGNRLRVEVYTHFTDNSGRSDYTSTYTLKRATAGGAAIIQEDCIGFNPNNARVRNVNGSWKIVDGNHWMFDFGNNRAEAMAALRVIRHYRMNQSCFVGRPDPSFQYMLVSGQAPQGSMPGEDCVSFNPNNVQVRNVNGSWKIVDGSHWMFDFGNKKAEADQALAIIKKYGFNKSCFVGRPDPSFQYMRK
>NZ_CP022571.1|WP_094082591.1|1277966_1279175_+|argininosuccinate-synthase
MSKDKIAIAYSGGLDTSVMIKWLKDRYDAEIVAVTGNLGQQKEIENLEQKALDTGASGFSFLDLRADFVENYIWKALKAGALYEDVYPLATALGRPLLAKALVDVALETDCTMLAHGCTGKGNDQVRFEVTFASLAPHLKVLAPLREWEFTSREAEIAYALEHDIPVSATKKSPYSIDENIWGISIECGVLEDPMMPPPEDAYQITTSPEKAPDRAAVIDIEFEQGIPIALDGRKMDGLALIEELNRAGAAHGVGRLDMVENRVVGIKSREIYEAPAATILHFAHRELERLTLEKTVFQYKKNIAQDYANLIYNGTWFSPMREALDGFVEATQKTVSGLVRVKLFKGSVTLLGRTSPWSLYNEELATYTEADTFNHKAAEGFIHLYGLGLKTYSEVQARNSR
>NZ_CP022571.1|WP_094082590.1|1277505_1277952_+|arginine-repressor
MGKQVRQRKIKELLLSHDVGNQHDLMELLLGSGIEVAQATLSRDCAELGVIRSRTATGYRLIFPEKTPGQMIRGLVEMEIQSIESNETAVVIRTLPGRAHGVGSFIDHLKNPRILGTIAGDDTVLIIPVSVRDVRSIVDYLQTNLSKT
>NZ_CP022571.1|WP_094082589.1|1276480_1277488_+|ornithine-carbamoyltransferase
MDTASTAAKRDFLGFSHLDAGKIIELFDFSLFIKKKRREGLAGSPYRPIEGKTVAMIFNKPSLRTRVSFELGIHELGGYSINLDGKSIGVNSREAVEDIARLLSRYNDAIVARLHEHSVIEDLARNAAIPVVNALTDLSHPCQILADAFTLYEKGLWRDDCKIVFVGDGNNVANSWIELAGILPFHFVLACPENHLPDAGLVETARAKGAGTVEIVHDPFEAARGADVLYTDVWTSMGQEEETAERLETFRDFQINAKLLAEASPSAVVMHCMPAHRGEEITAEVMEGPQSIIMDEAENRLHVQKAVLVKLLNHDEYRKFHLTHRLENVARKLKT
>NZ_CP022571.1|WP_094082588.1|1275543_1276464_+|acetylglutamate-kinase
MNTFCSELRDNNPNDRDSDIGQVLIEALPYIRKFEDKTFVIKYGGAAMKDEILKNAFAQNITLLRKVGINVVLVHGGGDAITRTAEKLGIETRFIHGKRVTDRNMIDVVQMTLAGKLNQDIVRLISEHGGKAVGVSGLDADTIKAVPCADAGQLGLVGEVSAINTTYLDLLCHAKLIPVIAPIGFDEDGNVYNINADDAASAIAIALKAEKLIYVSDVAGVHCGDRILKSVCKSAAADLIENGIISGGMIPKSLSAYKTLDAGVHKVHLIDGRYIHSLLLEIFTNQGVGTQFVIEKEAEENPNQQS
>NZ_CP022571.1|WP_094082587.1|1274230_1275514_+|bifunctional-glutamate-N-acetyltransferase/amino-acid-acetyltransferase-ArgJ
MSKLKKAYSAFERLSASTSWPEHVTPLPFKEGEEKRFWPTGFNAGTTSAAIKTRRPDIMVVSSDQPSSAAAVFTRNLCSAAPVSLSKEHLRTSSASMRAIVCNSGNANAATGRRGMRDAETMAVQTAAALGVHPEEVLVASTGVIGVPLPIERMSGAIGSFSAVVLEGSGADAAQAIMTTDTFPKFIAVDIALSGGTARLSGIAKGSGMICPDMATMLAFLFTDAAIDPALLREMLSAANERSFNAITVDGDTSTNDMAAILASGRSEQIARGSDDAALFFSALESVMTFLARLIVLDGEGATKLVEIRIVGAESDDDAQKAARAVAGSSLVKTAMNGEDANWGRIIAAVGRSGAKVDPERLTVTFNDLVILEPGYRSDFSEEEAKKILAEPGYTITVSMGNGVGRASVWTCDLSREYVEINADYRT
>NZ_CP022571.1|WP_094082586.1|1273179_1274196_+|N-acetyl-gamma-glutamyl-phosphate-reductase
MRGYKKPTVSIIGASGYSGAELTKLILGHPSVKLEKLFAFSQAGKTVADLYPATGCDMVYEQYDGEEHSDIYFLALPHGEALSIVPGLVSSGKTVIDLSGDFRLKNHEEHLRYYGRDKSPDDVMPYALPELFHEEIRASKAVSNPGCYATSIILGLAPLVKKPLGGAGLERVACTAISGISGAGRTAKTELSFAEMSGNIRAYKVGKHQHTPEIMQALGTDTMDPSFGFTFTPMIAPLVRGIYTVMNIQLEKHLAVSQIREHFRDFYRSAPFVRVRETMTEVRHVAHTNFCDVHVAESSPDGSAVIVTTIDNLVKGAAGQAVQNMNIMLGYDETLGLL
>NZ_CP022571.1|WP_094082585.1|1271988_1272897_-|substrate-binding-domain-containing-protein
MSPRKLFPVVVVASLILPLYLFACHGNRSGPSEISELPASATSGALTFGAESSLVPVIAPVGRMFSAYYPSARLKVSGGSFEELFNGFLRGDPAAMLVEGRLSGVEQSLLENAAFGYRLEPVAKGALVCIANRRGPVESLTSGQLRRLLSGGNASRRIVPVVNEHDVVLQRLLSERVSGGEAIHVRTVSGDAEVVRAVAGDRNVIGFLPLESTGQEVRVSGDSLSIRIVPVSPDGASAAVSPSQDNVYKGTYPLAYIIYYMYRKQDPLAAGFGAWLAREGQKGIVRSVLAPYRQPVRTINLK
>NZ_CP022571.1|WP_094082584.1|1270658_1271984_-|GGDEF-domain-containing-protein
MQDSRKVVVEPISFRPVISAGIVLAFFLLAGTAAFLFYQAKLQKRADELQMLYKDLLDFRSTLTLTDQQLKVSPRDPEILREIIQNTKLLQFRSVNFQSRAEKNNMPDLADWINSQRKLLEKTLTEIDMEREDVGTTIPLMVLEVDDVILQTGIEARRANEKVFDAVQVFLFFVLGVLLIVLVSAVWLIVSNYRQTVIPLNQLAGKLRMLNEELPESFHDTAEEVKKDIRHEAFSSDINEITDSIVRFCQNIDTKNKKLDELFIKDEKTNLYNYRHFKDHLIVDVARAKRFGEKVALAMIDIDHFKAYNDANGHVAGDIVLERIARIILEQCRESDIPARFGGEEFAVVFPRTESRMAVEIVERLRQVISAEPFYHEREQPGGQLTISAGVAMFPEDAVDWYSLVNSADKALYHAKKTGRNRVVYVAEIEKRESGEPGVQA
>NZ_CP022571.1|WP_150132329.1|1282595_1283675_-|hypothetical-protein
MSTSLKVSFLWTRTFFELFDNSTAASSPFSFFFRPSDYKGKIKSLYTGKSSLTLPWKLTDHTNRTNWFWKYYLNDINPLTSPHDTVANRCFPLCVPVRKSLTRLIAVGSPPAFGMHDRASFEGFFYRHGIACVCTFTIHDCSSLDEAVLKAMCLRHEPLFSILGRKNNVSLTTVGDYCRNLLCQEVGMVNDWFDEDPFSLVTVVEGEGNQTVRQGCNIHRALEALASWDRSWRQRPLPVLSAHTISIKNNHMSDIMYGHANSRVLWIPRLFAPGNNYALVWYCRNLLMASMQVKSFRDFLVRADNLQRINSATRIGGYAREVKAILRNMEKGLKTYSTMSVCKQINNDAQLQRILSVYP
>NZ_CP022571.1|WP_150132330.1|1283806_1285093_-|hypothetical-protein
MLTLIAKAIQAEERGNELARVSVHSTLTELNDFRPGYIYLVVENKTDTLLTVDRIEIAEYPDFIDIRKSSLDTTVVSRKKPVLVYPDKDTVNVGASGIYELFIEASDQLKPGKHLLLFNVLYHGWVPVETQQDTLSVIVRHPMTGSTTKTHEVEVKVFGEGEILGALSNAVTFLMMPGFIMVIVFAMAWKISAPASYQGKLPAWLKEAKIVDLQFWVIAITLSLIMARWIYPILTQLFTSGRRDYLYGYGFYDIVMMWGFSVLMGALSGLIAGGGVSLYRRISYRKAIHGNENPLEFLQKAVALGVKEAWLKKTTLKESGKSGYLIEEDDIEKESLWVIPRVHVLWQASADELYARFEDKIFDDKAILSDVLNTLVDGKKEGHEGKGLQGIEWEKSSHYIEKPLAVKKANLDSLKERENIFSSTMTGQ
>NZ_CP022571.1|WP_094082596.1|1285319_1286432_+|type-III-B-CRISPR-module-RAMP-protein-Cmr1
MPGSSTIVSIPLQTLTPLWTGGAQAGVVDRIHETGIIGSLRWWFEILVRSVGGKVLSPHEAILKLEDYKALNAGQKKDPVKLKQCGLCDVSLIFGATNWKRKFRLEIEDHTSDIHLRNISVNTGSGQPAKWFFKGPAREGNLTLKIIPLTRDRNLFDPAIIEGLVKFISDWGGFGARNQMGFGIVKPERHLDTRPLYDYLMRIDECTYNRQLPSLGNMFFARITSKEKKNFAAETTFVLKHALRKTIEVQEKKTAEPHTMNPDTPLSRFVMGAITPEKSAAKIYLSRPFEKEGTNTIRLWGWLPGESGHFSSRLSREGLLDLIYQHLRNNYSASPDDWIELKHSDAHQPDMQRRFLKLLLDIEEGNAHGT
>NZ_CP022571.1|WP_167375032.1|1286421_1287504_+|hypothetical-protein
MGHDYAAFQYRRLKDLLEELDTTSNQLKNRDKRKRKEAEKKVREIASEAVGIDAHTAYLWFAAQTDSQQDETRIKTLTSELRQQWLNRPVQQYPGQPHGIPAVPGGDRFDLLPPFSFVLSFQFELHKPFLSKDDEAFHLLDNPVRKDRVFQTPMIAASGWKGALRYALWQLEYPENDSSVISMFGNPRECERHDELHAGRLQFFSSHFNNTANNIEYEVVTPHDREKGTVGRQGPILLETIMAEANNKADFAVVYIPLFHGNETHAEIIRDFRALVKGLHAMMTVYGFGAKTSSGFGIAKDAVRDGLISLSLPSSAAKEINDQPASNGLQPRVIKTLHFHTLSELCTTQLPLFFEKEEEA
>NZ_CP022571.1|WP_094082598.1|1287500_1290428_+|hypothetical-protein
MTDRTEPSGLKLPDSQRQAILYLEILGLIHDLGKLTDGFIKKEAEGASTNEKKYEYRFFVDPLKLYTDKKPGETITEWQQTAHDALCAFKLRTDLTDSLMSLSFTAWDESDYSLAELVPFLSRTEYWRKNDQWIRELGKSMQPGSLIGFLHGIAHFDKESSGVHFSKQASTDTWRSTPFGYDVEQLPVGPAENLTTVFQQLPLSHVKIHEATQSAERREAWFDLMEKGLRKGLADTCRPINDVTLWDWGYLVASLAKAASYYLFNHGWPESLEHLPFRTLRINLDKLRLYADSDGITDLLGKQNAIDEAYRKVRQYIEFDLALGNRIHHDETGEYYLIPGILPSKDPTTALRQSIQDIFRQESLEDCLPRVHFGQEVTAGELDGNDRMEAVKHLLVNPRQNAESESLEAPVQYDNNLCLFEGEWSTGKPENAERCSVCGLRPVGYPATGDNPETEKNLQPWAREKKAKERHLCRICLNRRGRRAKKWAEEWAIHLHDHAPPTTVWADEAADDNGRIALFVGCFGLKHWLDGSALETTRLSGNNGKNPSPARLFRITETTRSFWSEVNTEVLPEAVTAESTRLVLTPASTEGLDLGSFHTYVVESRDIRISVVWDSERKYFLSVENLSGLMKRHGYSQDMLSMMKRLQNSFNGRECLLFQPSSYGNASCRLSSILFRTACLYPGYYRPIIPLLAEPGVCMNLIPADKAIDVSMNVLEKYQEEMNRVQDRLPMGIGLVFFPRRTPVRTVMEAGRAMLKMLKDKPETWVVTGKKDIDNNVDITFDDEKNSNITLSYETLSGRNTGPRDTWHLWCLDRESTPKKINELSMKQTVLIYPGRFDFEFLDTSGRRFDIHYDEQGRRPRNTRPFYLTDIQRFTGLWQHIRSLSKSQIHQVIELIETKRTEWRIAPGTTDERTEVFRKFVQSTLADAEWPVSHSFHTISEREALVQAGVDGVLTDIVELYLSILKSQPTENPKA
>NZ_CP022571.1|WP_094082599.1|1290424_1291405_+|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MTTSGRTPDYQRLTYLFMCTDPVHVGTGGYRLGRVDNSIVRDPGTNVPKIPGSSLHGAARAYAASVLNRPSCAGQGNPKRNDTRQNGQSGHCGVCPVCYTFGYSKNTDDQSAYSGTVNVFDAEILLFPVHSLEGPVWITTKSRLERLSGAEMASLSQPEHEESVIPLFETTENILTLGWLVLAIQPQNPEEAVGQLPGTLPEQIANHIVLVHENLFSNIVNSNLEIRTSVAINPERGAAEDGALFTYEAIPRTTILAADVVIDDYHQLHSPDNGTAACINPQEVLEGGLRLISWLGVGGMGTRGFGRMEMLEQPEPEHYRQEETDD
>NZ_CP022571.1|WP_094082600.1|1291415_1291808_+|hypothetical-protein
MKNLDYLAAKHAQKLAEQGDMETTVTKALGVLQEHGVYACFLYLLAKEKEGNKGKSTAGRMIGLLQESGLVPDEAIPEKPTDILHYVNEHISSAKLKKLLLIKDLLELMLVYSRYHANAMEPAESTEESI
>NZ_CP022571.1|WP_094082601.1|1291804_1292668_+|hypothetical-protein
MTAWKVFHVVFRLKAPMHIGCGKSGNLQRTYPFVTGRVFWGAVTARITRNNPEALRQHGQQAYRLIGDLVHQDLAYTYLYPAVKGSSGFEVQWPWAHGFISRHIRTYASTALAYPEQQAEEASLHETEYLTPFTCDTGEQVYLRGYLFAKESSTLQWQTALGKLQFGGERCYGWGDVEMISHDDQTTTSELFDGQARFIDGDFPVIELSDSSEGRLLAHTEADNCQAHGLTEPLVGREWRSGNPVNRHAGQHVAFNAFCFKPGSAVTSLPCRFQIGKYGIWSPEPSP
>NZ_CP022571.1|WP_094082602.1|1295705_1297109_+|argininosuccinate-lyase
MSTKKGNEKAEKELLWQSRFAEPFDREALLFSSSVDVDKALYQEDIRGSIAHVTMLSEEAIIPVEEARLIIEGLEDIEQEISSGALVPEWEDEDIHTVIENRLKEKIGPIAGKIHSGRSRNDQVATDTRLYLKRMISELDAALGSLKKLLVEKAETYRATIIFGYTHLQRAQPISAGHYYLAYFNMFHRDQERLYDLLKRVDVSPLGAAAFAGSTLPLNARRSMELLDFGSLFDNSIDAVSDRDIVIEFIAACSVVMMHLSRFCEDLILWSSSEFNYVEISDSFSTGSSIMPQKKNADIAELVRGKTGRVYGDLLNILTVMKGLPLSYNRDMQEDKPPLFDAAGTTLSCIRIFTRLLSNTRLNEERLARLTAGDLSLATEIAEYLVKKGLPFRDAHRITGRIVTRSIETDTPLPGLDLDAYREFSELFGEDLYDSLKPDSSVNSKKTHGSTSFSSVEEQLRNAAAKC
>NZ_CP022571.1|WP_094082603.1|1297146_1299216_-|carboxy-terminal-processing-peptidase
MFIHTRKILFLASALAVFLSLPFPEISRTAVSVPVKEPVLKPSPVQEEAERYLSRYLMQYHFRQLAVNDSLSREVLSRYLDELDESKSYFLASDIEVFRERYARSMDDEFLSGKADAGFYIYNRFLRQAREKMRYMIALFEKGGFDFTVQESMELKRDKAPWPATVQELRDLWRKEAKYQLLNLKYSGEEESDDPRKALIKRYRNRLSILEQQNAEDAFRAYTMALTTSFDPHTSYFSPGDFENFQIDISRSFEGIGAKLQSENEYTVIHEVIPGGPAFRSNLLKKGDRITGVGQGNKGEIVDIVGWRVNDVVKRIRGKKGSVVRLKILPASQGNKGPARIVEIVRDEVRLEEQSAKKEIIRLNGRKIGVITIPAFYLDFEGQSRNKPDYASTSRDVRKILGELRKENVEGIVLDLRNNGGGALEEAVKLTGLFIPDGPVVQIRNSQGGKVVLEDEDPAVVYDGPLVVLVNRYSASASEILAAAIQDYGRGVVIGGRTFGKGTVQSIMKIRRPFNFIYKADDLGQLKLTVAKFYRISGESTQHMGVKPDISFPSLIDSEVVGEDNYTSSLPWDVISPARYSRTSWLTGADVRDLRERFTQRNANDSLYSRYVRDLAVLNGFRKKESVPLFEPAFKAEMERIRSFEAQWSKEDQPDILLNRSAAVVVDMADLSGNRLPGAEQAPWQAEKK

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Crispr_ID: NZ_CP022571_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022571_2

1293001-1293255

TypeIII

Consensus_repeat	Method
GTCGCAATCCCCTGTAGCTAATCGGGTCGTCCTAC	CRT
GTCGCAATCCCCTGTAGCTAATCGGGTCGTCCTAC	PILER-CR

3 spacers

cmr3gr5,cmr5gr11,cmr4gr7,cas10,cmr6gr7,cmr1gr7,cas6

The CRISPR arrays of NZ_CP022571_2

>merge|NZ_CP022571|2|1293001-1293255|CRT,PILER-CR
CCACCTGTCCCCTGTAGCTAATCGGGTCGTCCTACTCGCTTTCTCAGATATTACCGTCCGAATCCGTATCAGTCGCAATCCCCTGTAGCTAATCGGGTCGTCCTACGATGTCAGGAAATCCCGATGGAGGAATATGTTTCTTTTGGTCGCAATCCCCTGTAGCTAATCGGGTCGTCCTACAGCGTTGTTTCGAGATACGGATCACGTATCCTGGTGGTATGTCGCAATCCCCTGTAGCTAATCGGGTCGTCCTAC

>NZ_CP022571|2|1|1293001-1293255|CRT
CCACCTGTCCCCTGTAGCTAATCGGGTCGTCCTAC	TCGCTTTCTCAGATATTACCGTCCGAATCCGTATCA
GTCGCAATCCCCTGTAGCTAATCGGGTCGTCCTAC	GATGTCAGGAAATCCCGATGGAGGAATATGTTTCTTTTG
GTCGCAATCCCCTGTAGCTAATCGGGTCGTCCTAC	AGCGTTGTTTCGAGATACGGATCACGTATCCTGGTGGTAT
GTCGCAATCCCCTGTAGCTAATCGGGTCGTCCTAC

>NZ_CP022571|2|2|1293072-1293255|PILER-CR
GTCGCAATCCCCTGTAGCTAATCGGGTCGTCCTAC	GATGTCAGGAAATCCCGATGGAGGAATATGTTTCTTTTG
GTCGCAATCCCCTGTAGCTAATCGGGTCGTCCTAC	AGCGTTGTTTCGAGATACGGATCACGTATCCTGGTGGTAT
GTCGCAATCCCCTGTAGCTAATCGGGTCGTCCTAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022571.1\|WP_094082598.1\|1287500_1290428_+\|hypothetical-protein	cas10	cd09701_cas10_CAS-III-C	gnl\|CDD\|187832
NZ_CP022571.1\|WP_094082602.1\|1295705_1297109_+\|argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|179143
NZ_CP022571.1\|WP_094082603.1\|1297146_1299216_-\|carboxy-terminal-processing-peptidase	unknown	unknown	gnl\|CDD\|236873
NZ_CP022571.1\|WP_094082607.1\|1302498_1302927_-\|ribose-5-phosphate-isomerase-B	unknown	unknown	gnl\|CDD\|376799
NZ_CP022571.1\|WP_150132330.1\|1283806_1285093_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022571.1\|WP_094082599.1\|1290424_1291405_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	gnl\|CDD\|224255
NZ_CP022571.1\|WP_094082610.1\|1305834_1306548_+\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
NZ_CP022571.1\|WP_150132329.1\|1282595_1283675_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022571.1\|WP_094082596.1\|1285319_1286432_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	cd09657_cmr1gr7_CAS-III-C	gnl\|CDD\|187788
NZ_CP022571.1\|WP_094082608.1\|1302923_1305062_-\|polyphosphate-kinase-1	unknown	unknown	gnl\|CDD\|235469
NZ_CP022571.1\|WP_094082606.1\|1301674_1302364_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|341406
NZ_CP022571.1\|WP_094082604.1\|1299355_1300330_+\|class-II-fructose-1,6-bisphosphate-aldolase	unknown	unknown	gnl\|CDD\|180829
NZ_CP022571.1\|WP_094082593.1\|1280684_1281680_-\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	mkCas0066_cas6_CAS-I:CAS-III	gnl\|CDD\|187890
NZ_CP022571.1\|WP_094082600.1\|1291415_1291808_+\|hypothetical-protein	cmr5gr11	mkCas0060_cmr5gr11_CAS-III-C	unknown
NZ_CP022571.1\|WP_167375032.1\|1286421_1287504_+\|hypothetical-protein	cmr6gr7	mkCas0142_cmr6gr7_CAS-III-C	gnl\|CDD\|187857
NZ_CP022571.1\|WP_094082601.1\|1291804_1292668_+\|hypothetical-protein	cmr3gr5	mkCas0067_cmr3gr5_CAS-III-C	unknown
NZ_CP022571.1\|WP_094082611.1\|1306583_1307915_+\|dihydroorotase	unknown	unknown	gnl\|CDD\|236479
NZ_CP022571.1\|WP_167375033.1\|1305087_1305630_-\|5-formyltetrahydrofolate-cyclo-ligase	unknown	unknown	gnl\|CDD\|274270
NZ_CP022571.1\|WP_094082605.1\|1300410_1301637_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|349882
NZ_CP022571.1\|WP_094082592.1\|1279496_1280393_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP022571.1\|WP_094082598.1\|1287500_1290428_+\|hypothetical-protein	gnl\|CDD\|187832	cd09701, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, inactivated palm domain and Zn-ribbon; signature gene for type III.	5.20464e-133
NZ_CP022571.1\|WP_094082602.1\|1295705_1297109_+\|argininosuccinate-lyase	gnl\|CDD\|179143	PRK00855, PRK00855, argininosuccinate lyase; Provisional.	0
NZ_CP022571.1\|WP_094082603.1\|1297146_1299216_-\|carboxy-terminal-processing-peptidase	gnl\|CDD\|236873	PRK11186, PRK11186, carboxy terminal-processing peptidase.	0
NZ_CP022571.1\|WP_094082607.1\|1302498_1302927_-\|ribose-5-phosphate-isomerase-B	gnl\|CDD\|376799	pfam02502, LacAB_rpiB, Ribose/Galactose Isomerase. This family of proteins contains the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB).	8.66088e-77
NZ_CP022571.1\|WP_167375033.1\|1305087_1305630_-\|5-formyltetrahydrofolate-cyclo-ligase	gnl\|CDD\|274270	TIGR02727, Uncharacterized_protein_YqgN, 5,10-methenyltetrahydrofolate synthetase. This enzyme, 5,10-methenyltetrahydrofolate synthetase, is also called 5-formyltetrahydrofolate cycloligase. Function of bacterial proteins in this family was inferred originally from the known activity of eukaryotic homologs. Recently, activity was shown explicitly for the member from Mycoplasma pneumonia. Members of this family from alpha- and gamma-proteobacteria, designated ygfA, are often found in an operon with 6S structural RNA, and show a similar pattern of high expression during stationary phase. The function may be to deplete folate to slow 1-carbon biosynthetic metabolism. [Central intermediary metabolism, One-carbon metabolism].	5.87357e-40
NZ_CP022571.1\|WP_094082599.1\|1290424_1291405_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|224255	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	3.45673e-39
NZ_CP022571.1\|WP_094082596.1\|1285319_1286432_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	gnl\|CDD\|187788	cd09657, Cmr1_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	3.38797e-18
NZ_CP022571.1\|WP_094082608.1\|1302923_1305062_-\|polyphosphate-kinase-1	gnl\|CDD\|235469	PRK05443, PRK05443, polyphosphate kinase; Provisional.	0
NZ_CP022571.1\|WP_094082606.1\|1301674_1302364_-\|hypothetical-protein	gnl\|CDD\|341406	cd09837, CBS_pair_chlorobiales, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in chlorobiales. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	1.53426e-14
NZ_CP022571.1\|WP_094082604.1\|1299355_1300330_+\|class-II-fructose-1,6-bisphosphate-aldolase	gnl\|CDD\|180829	PRK07084, PRK07084, class II fructose-1,6-bisphosphate aldolase.	0
NZ_CP022571.1\|WP_094082593.1\|1280684_1281680_-\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	gnl\|CDD\|187890	cd09760, Cas6_III, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex.	2.83061e-11
NZ_CP022571.1\|WP_167375032.1\|1286421_1287504_+\|hypothetical-protein	gnl\|CDD\|187857	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily proteins.	2.61282e-11
NZ_CP022571.1\|WP_094082605.1\|1300410_1301637_-\|amidohydrolase	gnl\|CDD\|349882	cd03886, M20_Acy1, M20 Peptidase Aminoacylase 1 family. Peptidase M20 family, Aminoacylase 1 (ACY1; hippuricase; acylase I; amido acid deacylase; IAA-amino acid hydrolase; dehydropeptidase II; N-acyl-L-amino-acid amidohydrolase; EC 3.5.1.14) subfamily. ACY1 is the most abundant of the aminoacylases, a class of zinc binding homodimeric enzymes involved in the hydrolysis of N-acetylated proteins. It is encoded by the aminoacylase 1 gene (Acy1) on chromosome 3p21 that comprises 15 exons. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in the protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity; substrates include indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. ACY1 breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine). ACY1 appears to physically interact with Sphingosine kinase type 1 (SphK1) and may influence its physiological functions; SphK1 and its product sphingosine-1-phosphate have been shown to promote cell growth and inhibit apoptosis of tumor cells. Strong expression of the human gene and its mouse ortholog Acy1 in brain, liver, and kidney, suggest a role of the enzyme in amino acid metabolism of these organs. Defects in ACY1 are the cause of aminoacylase-1 deficiency (ACY1D), resulting in a metabolic disorder manifesting encephalopathy and psychomotor delay.	4.88824e-155
NZ_CP022571.1\|WP_094082611.1\|1306583_1307915_+\|dihydroorotase	gnl\|CDD\|236479	PRK09357, pyrC, dihydroorotase; Validated.	0
NZ_CP022571.1\|WP_094082610.1\|1305834_1306548_+\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	1.22556e-64

>NZ_CP022571.1|WP_094082601.1|1291804_1292668_+|hypothetical-protein
MTAWKVFHVVFRLKAPMHIGCGKSGNLQRTYPFVTGRVFWGAVTARITRNNPEALRQHGQQAYRLIGDLVHQDLAYTYLYPAVKGSSGFEVQWPWAHGFISRHIRTYASTALAYPEQQAEEASLHETEYLTPFTCDTGEQVYLRGYLFAKESSTLQWQTALGKLQFGGERCYGWGDVEMISHDDQTTTSELFDGQARFIDGDFPVIELSDSSEGRLLAHTEADNCQAHGLTEPLVGREWRSGNPVNRHAGQHVAFNAFCFKPGSAVTSLPCRFQIGKYGIWSPEPSP
>NZ_CP022571.1|WP_094082600.1|1291415_1291808_+|hypothetical-protein
MKNLDYLAAKHAQKLAEQGDMETTVTKALGVLQEHGVYACFLYLLAKEKEGNKGKSTAGRMIGLLQESGLVPDEAIPEKPTDILHYVNEHISSAKLKKLLLIKDLLELMLVYSRYHANAMEPAESTEESI
>NZ_CP022571.1|WP_094082599.1|1290424_1291405_+|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MTTSGRTPDYQRLTYLFMCTDPVHVGTGGYRLGRVDNSIVRDPGTNVPKIPGSSLHGAARAYAASVLNRPSCAGQGNPKRNDTRQNGQSGHCGVCPVCYTFGYSKNTDDQSAYSGTVNVFDAEILLFPVHSLEGPVWITTKSRLERLSGAEMASLSQPEHEESVIPLFETTENILTLGWLVLAIQPQNPEEAVGQLPGTLPEQIANHIVLVHENLFSNIVNSNLEIRTSVAINPERGAAEDGALFTYEAIPRTTILAADVVIDDYHQLHSPDNGTAACINPQEVLEGGLRLISWLGVGGMGTRGFGRMEMLEQPEPEHYRQEETDD
>NZ_CP022571.1|WP_094082598.1|1287500_1290428_+|hypothetical-protein
MTDRTEPSGLKLPDSQRQAILYLEILGLIHDLGKLTDGFIKKEAEGASTNEKKYEYRFFVDPLKLYTDKKPGETITEWQQTAHDALCAFKLRTDLTDSLMSLSFTAWDESDYSLAELVPFLSRTEYWRKNDQWIRELGKSMQPGSLIGFLHGIAHFDKESSGVHFSKQASTDTWRSTPFGYDVEQLPVGPAENLTTVFQQLPLSHVKIHEATQSAERREAWFDLMEKGLRKGLADTCRPINDVTLWDWGYLVASLAKAASYYLFNHGWPESLEHLPFRTLRINLDKLRLYADSDGITDLLGKQNAIDEAYRKVRQYIEFDLALGNRIHHDETGEYYLIPGILPSKDPTTALRQSIQDIFRQESLEDCLPRVHFGQEVTAGELDGNDRMEAVKHLLVNPRQNAESESLEAPVQYDNNLCLFEGEWSTGKPENAERCSVCGLRPVGYPATGDNPETEKNLQPWAREKKAKERHLCRICLNRRGRRAKKWAEEWAIHLHDHAPPTTVWADEAADDNGRIALFVGCFGLKHWLDGSALETTRLSGNNGKNPSPARLFRITETTRSFWSEVNTEVLPEAVTAESTRLVLTPASTEGLDLGSFHTYVVESRDIRISVVWDSERKYFLSVENLSGLMKRHGYSQDMLSMMKRLQNSFNGRECLLFQPSSYGNASCRLSSILFRTACLYPGYYRPIIPLLAEPGVCMNLIPADKAIDVSMNVLEKYQEEMNRVQDRLPMGIGLVFFPRRTPVRTVMEAGRAMLKMLKDKPETWVVTGKKDIDNNVDITFDDEKNSNITLSYETLSGRNTGPRDTWHLWCLDRESTPKKINELSMKQTVLIYPGRFDFEFLDTSGRRFDIHYDEQGRRPRNTRPFYLTDIQRFTGLWQHIRSLSKSQIHQVIELIETKRTEWRIAPGTTDERTEVFRKFVQSTLADAEWPVSHSFHTISEREALVQAGVDGVLTDIVELYLSILKSQPTENPKA
>NZ_CP022571.1|WP_167375032.1|1286421_1287504_+|hypothetical-protein
MGHDYAAFQYRRLKDLLEELDTTSNQLKNRDKRKRKEAEKKVREIASEAVGIDAHTAYLWFAAQTDSQQDETRIKTLTSELRQQWLNRPVQQYPGQPHGIPAVPGGDRFDLLPPFSFVLSFQFELHKPFLSKDDEAFHLLDNPVRKDRVFQTPMIAASGWKGALRYALWQLEYPENDSSVISMFGNPRECERHDELHAGRLQFFSSHFNNTANNIEYEVVTPHDREKGTVGRQGPILLETIMAEANNKADFAVVYIPLFHGNETHAEIIRDFRALVKGLHAMMTVYGFGAKTSSGFGIAKDAVRDGLISLSLPSSAAKEINDQPASNGLQPRVIKTLHFHTLSELCTTQLPLFFEKEEEA
>NZ_CP022571.1|WP_094082596.1|1285319_1286432_+|type-III-B-CRISPR-module-RAMP-protein-Cmr1
MPGSSTIVSIPLQTLTPLWTGGAQAGVVDRIHETGIIGSLRWWFEILVRSVGGKVLSPHEAILKLEDYKALNAGQKKDPVKLKQCGLCDVSLIFGATNWKRKFRLEIEDHTSDIHLRNISVNTGSGQPAKWFFKGPAREGNLTLKIIPLTRDRNLFDPAIIEGLVKFISDWGGFGARNQMGFGIVKPERHLDTRPLYDYLMRIDECTYNRQLPSLGNMFFARITSKEKKNFAAETTFVLKHALRKTIEVQEKKTAEPHTMNPDTPLSRFVMGAITPEKSAAKIYLSRPFEKEGTNTIRLWGWLPGESGHFSSRLSREGLLDLIYQHLRNNYSASPDDWIELKHSDAHQPDMQRRFLKLLLDIEEGNAHGT
>NZ_CP022571.1|WP_150132330.1|1283806_1285093_-|hypothetical-protein
MLTLIAKAIQAEERGNELARVSVHSTLTELNDFRPGYIYLVVENKTDTLLTVDRIEIAEYPDFIDIRKSSLDTTVVSRKKPVLVYPDKDTVNVGASGIYELFIEASDQLKPGKHLLLFNVLYHGWVPVETQQDTLSVIVRHPMTGSTTKTHEVEVKVFGEGEILGALSNAVTFLMMPGFIMVIVFAMAWKISAPASYQGKLPAWLKEAKIVDLQFWVIAITLSLIMARWIYPILTQLFTSGRRDYLYGYGFYDIVMMWGFSVLMGALSGLIAGGGVSLYRRISYRKAIHGNENPLEFLQKAVALGVKEAWLKKTTLKESGKSGYLIEEDDIEKESLWVIPRVHVLWQASADELYARFEDKIFDDKAILSDVLNTLVDGKKEGHEGKGLQGIEWEKSSHYIEKPLAVKKANLDSLKERENIFSSTMTGQ
>NZ_CP022571.1|WP_150132329.1|1282595_1283675_-|hypothetical-protein
MSTSLKVSFLWTRTFFELFDNSTAASSPFSFFFRPSDYKGKIKSLYTGKSSLTLPWKLTDHTNRTNWFWKYYLNDINPLTSPHDTVANRCFPLCVPVRKSLTRLIAVGSPPAFGMHDRASFEGFFYRHGIACVCTFTIHDCSSLDEAVLKAMCLRHEPLFSILGRKNNVSLTTVGDYCRNLLCQEVGMVNDWFDEDPFSLVTVVEGEGNQTVRQGCNIHRALEALASWDRSWRQRPLPVLSAHTISIKNNHMSDIMYGHANSRVLWIPRLFAPGNNYALVWYCRNLLMASMQVKSFRDFLVRADNLQRINSATRIGGYAREVKAILRNMEKGLKTYSTMSVCKQINNDAQLQRILSVYP
>NZ_CP022571.1|WP_094082593.1|1280684_1281680_-|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6
MYASFASLSIARFRFTIEPTEEIRLPEYKGSALRGGFGYAFKRATCITRDRFCEPCILKSSCAYHRVFESKVPPDTSERLRLGGDAPHPFVIEPPLTEQRYFQPGDRLTFSLVLFGGAVGQLPFFVYAFMILGESFGIGKGRGRFRLLGVEDENGKQLYDNGNLSGGCEVRTAGEIMNSTADGSAELTLRFETPLRMKTAYGREKKGLVTGMGDPASVRMLLKSLHHRAFVLNQLYGEGVKEETYNGRMFSPVDGDLEVVRADTFWYDWERYSQRQQRRMRLGGVMGEVTLGGTLQRYMPLLRLGQYLHVGKGTGFGLGKYRIAGDAAGSA
>NZ_CP022571.1|WP_094082592.1|1279496_1280393_+|hypothetical-protein
MKKQFLVGAIALFVLLCHSSAFAAIGQFTGSWENTDSNTRGITKLVISENGGKVSLQAWGKCHPQDCDWGKVPAYLYAPSVSSNPMQNGRVISAMFDKGFSQTLLIVRPSGNRLRVEVYTHFTDNSGRSDYTSTYTLKRATAGGAAIIQEDCIGFNPNNARVRNVNGSWKIVDGNHWMFDFGNNRAEAMAALRVIRHYRMNQSCFVGRPDPSFQYMLVSGQAPQGSMPGEDCVSFNPNNVQVRNVNGSWKIVDGSHWMFDFGNKKAEADQALAIIKKYGFNKSCFVGRPDPSFQYMRK
>NZ_CP022571.1|WP_094082602.1|1295705_1297109_+|argininosuccinate-lyase
MSTKKGNEKAEKELLWQSRFAEPFDREALLFSSSVDVDKALYQEDIRGSIAHVTMLSEEAIIPVEEARLIIEGLEDIEQEISSGALVPEWEDEDIHTVIENRLKEKIGPIAGKIHSGRSRNDQVATDTRLYLKRMISELDAALGSLKKLLVEKAETYRATIIFGYTHLQRAQPISAGHYYLAYFNMFHRDQERLYDLLKRVDVSPLGAAAFAGSTLPLNARRSMELLDFGSLFDNSIDAVSDRDIVIEFIAACSVVMMHLSRFCEDLILWSSSEFNYVEISDSFSTGSSIMPQKKNADIAELVRGKTGRVYGDLLNILTVMKGLPLSYNRDMQEDKPPLFDAAGTTLSCIRIFTRLLSNTRLNEERLARLTAGDLSLATEIAEYLVKKGLPFRDAHRITGRIVTRSIETDTPLPGLDLDAYREFSELFGEDLYDSLKPDSSVNSKKTHGSTSFSSVEEQLRNAAAKC
>NZ_CP022571.1|WP_094082603.1|1297146_1299216_-|carboxy-terminal-processing-peptidase
MFIHTRKILFLASALAVFLSLPFPEISRTAVSVPVKEPVLKPSPVQEEAERYLSRYLMQYHFRQLAVNDSLSREVLSRYLDELDESKSYFLASDIEVFRERYARSMDDEFLSGKADAGFYIYNRFLRQAREKMRYMIALFEKGGFDFTVQESMELKRDKAPWPATVQELRDLWRKEAKYQLLNLKYSGEEESDDPRKALIKRYRNRLSILEQQNAEDAFRAYTMALTTSFDPHTSYFSPGDFENFQIDISRSFEGIGAKLQSENEYTVIHEVIPGGPAFRSNLLKKGDRITGVGQGNKGEIVDIVGWRVNDVVKRIRGKKGSVVRLKILPASQGNKGPARIVEIVRDEVRLEEQSAKKEIIRLNGRKIGVITIPAFYLDFEGQSRNKPDYASTSRDVRKILGELRKENVEGIVLDLRNNGGGALEEAVKLTGLFIPDGPVVQIRNSQGGKVVLEDEDPAVVYDGPLVVLVNRYSASASEILAAAIQDYGRGVVIGGRTFGKGTVQSIMKIRRPFNFIYKADDLGQLKLTVAKFYRISGESTQHMGVKPDISFPSLIDSEVVGEDNYTSSLPWDVISPARYSRTSWLTGADVRDLRERFTQRNANDSLYSRYVRDLAVLNGFRKKESVPLFEPAFKAEMERIRSFEAQWSKEDQPDILLNRSAAVVVDMADLSGNRLPGAEQAPWQAEKK
>NZ_CP022571.1|WP_094082604.1|1299355_1300330_+|class-II-fructose-1,6-bisphosphate-aldolase
MQKKPVGYKELGLVNSRKLFEKAVTGGYAIPAYNFNNLEQLQAIVMACVETKSPVILQVSKGARNYANETLLRHLARGAVEYAEELGSPVPIVLHLDHGDTFELCKDCIDSGFSSVMIDGSHLDYDENVALTRKVVEYAHTHDVTVEGELGVLAGIEDEVSAETHTYTQPEEVEDFVSKTGVDSLAISIGTSHGAFKFKPGEDPKIRLDILEEIEQRIPGFPIVLHGSSSVPQDLVRTINEHGGKLKDAIGIGEDQLREAARSAVCKINIDSDGRLAMTAAVRKVLDEHPEEFDPRKYLGPARDALKVLYMHKIRNVLGSDGKA
>NZ_CP022571.1|WP_094082605.1|1300410_1301637_-|amidohydrolase
MTYNPSVLRQRIRDKAAELHPGIVSIRRDIHMHPELSFREFRTTALVREYLLGLGLRIEHEYLETGVVARLESGTEAQRLPLVALRADMDALPVPEENSHDFCSVEKGVMHACGHDMHTAILMGAAAILASMKEQLPGDVLFIFQPAEEKAPGGAVPLIEAGLFRDYDPSAIFALHCFPHILAGNVAVREGSLMAAADELYITVHGEGGHASAPHKASDPVLGAAHIVTAVQHLVSRASSPYEPAVVSISSIQGGSATNVIPGRVSMSGTMRSMSEELRALLQKRLAGTVEHIAAGLGVRGELDIVSGYPVLVNDPETSRFVRSELEGFLGREHVEESEPLMTAEDFSSYLRYCPGTFIQLGTGRPGQSRGNALHSPFFNPDESALRTGMEVMSCVALGWLEKSVGEG
>NZ_CP022571.1|WP_094082606.1|1301674_1302364_-|hypothetical-protein
MTIVHRYIDVDYPVFQSDDKALDVLARLDELDLGEAPVLKDGKLFALVSSGELRRALAPAGGEASGLLVGDMRFEIPESVRPDVHLLDVFPCLCRERSKNLLAISGDDGAFVGVAPKMPLLRAIASLFHFDEKGATIEIEVPALGVKLSEIIGVLEKNEATVLSFGVAVPDPGAQSMVITFRLRTSDSFRLAKTLEKYGYAVHFATPSSDGGVDELREKALEFMRYIDM
>NZ_CP022571.1|WP_094082607.1|1302498_1302927_-|ribose-5-phosphate-isomerase-B
MRIAVGSDHAGYEFKKTVSAWLERNGHEVNDMGPYSEESVDYPDYARKVGEAVAKGECDQGVLLCGTGIGVSISANKIPGIRAALACKPEFATLARQHNNANVLCFSARFTDAPTIEQSLENWFAAEFEGGRHERRVAKIEP
>NZ_CP022571.1|WP_094082608.1|1302923_1305062_-|polyphosphate-kinase-1
MSKTVETVPVSEKKRDFLNPGYYVNRELGWIEFNQRVLEEALSPDAHPLLERVKFISIFSSNLDEFFMIRVAGLEDQYEAGIQDRSVDGLTPMEQLEEIRERIMVQLRRRNDCFYEDLCPKLSSQGIEFVGYDSLTVAQQEGLQRYFRHEIFPVLTPLAVDPGHPFPFVSNLSLNLAVELEDLETQLLKFARVKVPSILPRILRLDAVEGLDFGDGRIRLLWLEDLIMKNLGQLFPHMRIVQCHPFRIIRDADIEIEEDEAGDLLESIEQGIRSRRYGKVVRLDVTPSMPGSMRRILMKNLEVQPRNLYEIEGALGLSGLMEMMAIERPALKDEPFAPHNPLEEKFGGDVFAAIRQGDQLLYHPYDSFQPVVDLIDQAAKDPQVLSIKQTLYRVGGNSPVVESLMNAVEARKQVAVLVELKARFDEENNIGWARALEDVGAHVVYGLVGLKTHAKLTLIVRREHDRLVRYLHLGTGNYNPSTAKIYTDYSYLTANEELANDVSELFNALTGYSKHTSYRKLIVSPINTRKRIIEMIDREIDWHRKQGKGRIIMKMNALVDRKTIQALYRASCEGVSIDLIIRGICCLVPGIEGVSENIRVVSVIGRFLEHSRAYYFHNGGMDELFLGSADMMPRNLDHRVEALFPIMDKEMVETVKSELELILYDNVKAWRMMPDGSYARVADDRPKVNSQNVFLNQASMKKSISKFKVNGL
>NZ_CP022571.1|WP_167375033.1|1305087_1305630_-|5-formyltetrahydrofolate-cyclo-ligase
MRNVREAMSVTEWESSSGMAAANAAGLPEMLGAGSVMLYLAMAERREVDTAPLVRMIGGGKERALYMPLCSGDSLCAVPFREGDPLFPGAFGQPEPVGGCVDVVPDVLVLPVVAVDARGNRLGYGKGFYDRFISGLRRKGGEPFLLALAFSFQIVDSLPKDPWDQAVDCIVTEKEVMRIR
>NZ_CP022571.1|WP_094082610.1|1305834_1306548_+|fumarylacetoacetate-hydrolase-family-protein
MNQPSSRHPEPSSIFCVGKNYRLHAEEMRRWESAEGAEAERPEEEPIIFLKSPSALSTDGTTTIPSLWGKPVSNEMHYEAELVLLVGSDASDIGEKDAGSCIAGYGVGLDMTLRDVQIAAKKKGNPWFKSKGFKKSALVSGFVPASEVSGAEALAFELRLNDRIVQRGDPRKMLFGCSYLISYLSYIYGLRAGDLIFTGTPEGVGPATRGDRLTASLHGNGNGAAVGMLAGFSVTVA
>NZ_CP022571.1|WP_094082611.1|1306583_1307915_+|dihydroorotase
MAIIFQNARLINPAQNLDMQGSVRVSLNGMIDSIAFAPETLEAGPDDRVVEMNGKIVASGLFDMHCHFREPGQEYKETLETGSRAAVAGGFTGVALMPNTKPVIDGPLGAAYLRHNARELPIDIEIVSAMTLESRGETLAPFGKLSSYGVKAVSDDGRAVPDSRMMRLVFEYAASFDLLLIQHCEDASLGEGGVMNEGAYSALLGLKGIPEAAETITLSRDLLLMEYLQAHKLNPPVSTPKYHVAHVSTRKALDLVRQAKADGMQVTCEVTPHHFTLTDQDLYEAGEKGNFIMKPPLSSRDNRDAVLEALADGVIDAIATDHAPHARHEKECPPDQAAFGVIGLETSVGLTFSELVHTGRINEYRAIELLSSNPRTIMGLPPVLFEPGQPANFTFIDPEENWTFTESDIRSKGRNSPFLGRTMKGRPLGIYHKGALHGFAQDR

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Crispr_ID: NZ_CP022571_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022571_3

1293654-1295039

TypeIII

Consensus_repeat	Method
GTCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	CRISPRCasFinder
TCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	CRT
TCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	PILER-CR

20 spacers

cmr3gr5,cmr5gr11,cmr4gr7,cas10,cmr6gr7,cmr1gr7,cas6

The CRISPR arrays of NZ_CP022571_3

>merge|NZ_CP022571|3|1293654-1295039|CRISPRCasFinder,CRT,PILER-CR
CCTGCTGTCCCCTACGCGCTTGCGGGTCTTCACTGTGTCGTTCTTGCGGTAACACAGCTTGGCAGATCTCAATCCCCTACGCGCTTGCGGGTCTTCACTTAACGGCTCTTATCCCTCAAACACACAAGCTACTGACTCTCAATCCCCTACGCGCTTGCGGGTCTTCACAACAAACCGGTAGTCGAGGATCCGGCGATCAAGCGCTCTCAATCCCCTACGCGCTTGCGGGTCTTCACTTGTTGAGCGATGAACTACCGGGATTACGCGGCGCAGTCTCAATCCCCTACGCGCTTGCGGGTCTTCACCGCAACGTCATCAATCACCCCCGGTGTCGCACCGTCTCAATCCCCTACGCGCTTGCGGGTCTTCACTAATGCCTTTCGCCCCGCCGCTCGGAAATACATGTCTCAATCCCCTACGCGCTTGCGGGTCTTCACGCGGGCAGAACGATAAAGAGCCTTGAGTCAAGACTTAGTCTCAATCCCCTACGCGCTTGCGGGTCTTCACCGCCATCGGTATCAATGGTGACAGCACCGGCACTGTCTCAATCCCCTACGCGCTTGCGGGTCTTCACACGAAGATCGGCCTCACTCATTCCCGCAACATCGCCGTCTCAATCCCCTACGCGCTTGCGGGTCTTCACCCTTGATACATGGTTGGAGCGTAGTGAGTATTCAGCTCTCAATCCCCTACGCGCTTGCGGGTCTTCACGGAATCGCGCTGATGAATAGCGCGATCACGTTGATTCTCAATCCCCTACGCGCTTGCGGGTCTTCACCGATGCAATCCAAAAGCACAACGAGTATGTGGCCAATCTCAATCCCCTACGCGCTTGCGGGTCTTCACCTCAATGAACTTAATGCGCGAATTGACGAAATAAATCTCAATCCCCTACGCGCTTGCGGGTCTTCACAACGGCTCCGCTACGGAGACGGGCGAAAAATCGCCATCTCAATCCCCTACGCGCTTGCGGGTCTTCACTCAATCCGCTACACTTCGGCGATCAATAAGGCGAATCTCAATCCCCTACGCGCTTGCGGGTCTTCACCCGCAGCGCCACGCACAAAAGAGCAGCTTATCGAAATCTCAATCCCCTACGCGCTTGCGGGTCTTCACCAGATGGGCGTTTTGTCGTTGCAGACGTTGTCCGGTCTCAATCCCCTACGCGCTTGCGGGTCTTCACTCCGCGCATCCGCACAAGCTCGCCATTTACAGGCAGGTCTCAATCCCCTACGCGCTTGCGGGTCTTCACCGTTGTAAATTAATAAATAAATCTGACTGACTCATGTCTCAATCCCCTACGCGCTTGCGGGTCTTCACCAGATCTACGGACGATATTTTCCAGTTATGCGGGTCTCAATCCCCTACGCGCTTGCGGGTCTTCAC

>NZ_CP022571|3|2|1293654-1295039|CRISPRCasFinder
CCTGCTGTCCCCTACGCGCTTGCGGGTCTTCAC	TGTGTCGTTCTTGCGGTAACACAGCTTGGCAG
ATCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	TTAACGGCTCTTATCCCTCAAACACACAAGCTACTGA
CTCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	AACAAACCGGTAGTCGAGGATCCGGCGATCAAGCG
CTCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	TTGTTGAGCGATGAACTACCGGGATTACGCGGCGCA
GTCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	CGCAACGTCATCAATCACCCCCGGTGTCGCACC
GTCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	TAATGCCTTTCGCCCCGCCGCTCGGAAATACAT
GTCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	GCGGGCAGAACGATAAAGAGCCTTGAGTCAAGACTTA
GTCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	CGCCATCGGTATCAATGGTGACAGCACCGGCACT
GTCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	ACGAAGATCGGCCTCACTCATTCCCGCAACATCGCC
GTCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	CCTTGATACATGGTTGGAGCGTAGTGAGTATTCAG
CTCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	GGAATCGCGCTGATGAATAGCGCGATCACGTTGA
TTCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	CGATGCAATCCAAAAGCACAACGAGTATGTGGCCA
ATCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	CTCAATGAACTTAATGCGCGAATTGACGAAATAA
ATCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	AACGGCTCCGCTACGGAGACGGGCGAAAAATCGCC
ATCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	TCAATCCGCTACACTTCGGCGATCAATAAGGCGA
ATCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	CCGCAGCGCCACGCACAAAAGAGCAGCTTATCGAA
ATCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	CAGATGGGCGTTTTGTCGTTGCAGACGTTGTCCG
GTCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	TCCGCGCATCCGCACAAGCTCGCCATTTACAGGCAG
GTCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	CGTTGTAAATTAATAAATAAATCTGACTGACTCAT
GTCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	CAGATCTACGGACGATATTTTCCAGTTATGCGG
GTCTCAATCCCCTACGCGCTTGCGGGTCTTCAC

>NZ_CP022571|3|2|1293655-1295039|CRT
CTGCTGTCCCCTACGCGCTTGCGGGTCTTCAC	TGTGTCGTTCTTGCGGTAACACAGCTTGGCAGA
TCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	TTAACGGCTCTTATCCCTCAAACACACAAGCTACTGAC
TCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	AACAAACCGGTAGTCGAGGATCCGGCGATCAAGCGC
TCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	TTGTTGAGCGATGAACTACCGGGATTACGCGGCGCAG
TCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	CGCAACGTCATCAATCACCCCCGGTGTCGCACCG
TCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	TAATGCCTTTCGCCCCGCCGCTCGGAAATACATG
TCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	GCGGGCAGAACGATAAAGAGCCTTGAGTCAAGACTTAG
TCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	CGCCATCGGTATCAATGGTGACAGCACCGGCACTG
TCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	ACGAAGATCGGCCTCACTCATTCCCGCAACATCGCCG
TCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	CCTTGATACATGGTTGGAGCGTAGTGAGTATTCAGC
TCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	GGAATCGCGCTGATGAATAGCGCGATCACGTTGAT
TCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	CGATGCAATCCAAAAGCACAACGAGTATGTGGCCAA
TCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	CTCAATGAACTTAATGCGCGAATTGACGAAATAAA
TCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	AACGGCTCCGCTACGGAGACGGGCGAAAAATCGCCA
TCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	TCAATCCGCTACACTTCGGCGATCAATAAGGCGAA
TCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	CCGCAGCGCCACGCACAAAAGAGCAGCTTATCGAAA
TCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	CAGATGGGCGTTTTGTCGTTGCAGACGTTGTCCGG
TCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	TCCGCGCATCCGCACAAGCTCGCCATTTACAGGCAGG
TCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	CGTTGTAAATTAATAAATAAATCTGACTGACTCATG
TCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	CAGATCTACGGACGATATTTTCCAGTTATGCGGG
TCTCAATCCCCTACGCGCTTGCGGGTCTTCAC

>NZ_CP022571|3|3|1293720-1295039|PILER-CR
TCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	TTAACGGCTCTTATCCCTCAAACACACAAGCTACTGAC
TCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	AACAAACCGGTAGTCGAGGATCCGGCGATCAAGCGC
TCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	TTGTTGAGCGATGAACTACCGGGATTACGCGGCGCAG
TCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	CGCAACGTCATCAATCACCCCCGGTGTCGCACCG
TCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	TAATGCCTTTCGCCCCGCCGCTCGGAAATACATG
TCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	GCGGGCAGAACGATAAAGAGCCTTGAGTCAAGACTTAG
TCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	CGCCATCGGTATCAATGGTGACAGCACCGGCACTG
TCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	ACGAAGATCGGCCTCACTCATTCCCGCAACATCGCCG
TCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	CCTTGATACATGGTTGGAGCGTAGTGAGTATTCAGC
TCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	GGAATCGCGCTGATGAATAGCGCGATCACGTTGAT
TCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	CGATGCAATCCAAAAGCACAACGAGTATGTGGCCAA
TCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	CTCAATGAACTTAATGCGCGAATTGACGAAATAAA
TCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	AACGGCTCCGCTACGGAGACGGGCGAAAAATCGCCA
TCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	TCAATCCGCTACACTTCGGCGATCAATAAGGCGAA
TCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	CCGCAGCGCCACGCACAAAAGAGCAGCTTATCGAAA
TCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	CAGATGGGCGTTTTGTCGTTGCAGACGTTGTCCGG
TCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	TCCGCGCATCCGCACAAGCTCGCCATTTACAGGCAGG
TCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	CGTTGTAAATTAATAAATAAATCTGACTGACTCATG
TCTCAATCCCCTACGCGCTTGCGGGTCTTCAC	CAGATCTACGGACGATATTTTCCAGTTATGCGGG
TCTCAATCCCCTACGCGCTTGCGGGTCTTCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022571.1\|WP_094082598.1\|1287500_1290428_+\|hypothetical-protein	cas10	cd09701_cas10_CAS-III-C	gnl\|CDD\|187832
NZ_CP022571.1\|WP_094082602.1\|1295705_1297109_+\|argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|179143
NZ_CP022571.1\|WP_094082603.1\|1297146_1299216_-\|carboxy-terminal-processing-peptidase	unknown	unknown	gnl\|CDD\|236873
NZ_CP022571.1\|WP_094082607.1\|1302498_1302927_-\|ribose-5-phosphate-isomerase-B	unknown	unknown	gnl\|CDD\|376799
NZ_CP022571.1\|WP_150132330.1\|1283806_1285093_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022571.1\|WP_094082599.1\|1290424_1291405_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	gnl\|CDD\|224255
NZ_CP022571.1\|WP_094082610.1\|1305834_1306548_+\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
NZ_CP022571.1\|WP_150132329.1\|1282595_1283675_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022571.1\|WP_094082596.1\|1285319_1286432_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	cd09657_cmr1gr7_CAS-III-C	gnl\|CDD\|187788
NZ_CP022571.1\|WP_094082608.1\|1302923_1305062_-\|polyphosphate-kinase-1	unknown	unknown	gnl\|CDD\|235469
NZ_CP022571.1\|WP_094082606.1\|1301674_1302364_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|341406
NZ_CP022571.1\|WP_094082604.1\|1299355_1300330_+\|class-II-fructose-1,6-bisphosphate-aldolase	unknown	unknown	gnl\|CDD\|180829
NZ_CP022571.1\|WP_094082593.1\|1280684_1281680_-\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	mkCas0066_cas6_CAS-I:CAS-III	gnl\|CDD\|187890
NZ_CP022571.1\|WP_094082600.1\|1291415_1291808_+\|hypothetical-protein	cmr5gr11	mkCas0060_cmr5gr11_CAS-III-C	unknown
NZ_CP022571.1\|WP_167375032.1\|1286421_1287504_+\|hypothetical-protein	cmr6gr7	mkCas0142_cmr6gr7_CAS-III-C	gnl\|CDD\|187857
NZ_CP022571.1\|WP_094082601.1\|1291804_1292668_+\|hypothetical-protein	cmr3gr5	mkCas0067_cmr3gr5_CAS-III-C	unknown
NZ_CP022571.1\|WP_094082611.1\|1306583_1307915_+\|dihydroorotase	unknown	unknown	gnl\|CDD\|236479
NZ_CP022571.1\|WP_167375033.1\|1305087_1305630_-\|5-formyltetrahydrofolate-cyclo-ligase	unknown	unknown	gnl\|CDD\|274270
NZ_CP022571.1\|WP_094082605.1\|1300410_1301637_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|349882
NZ_CP022571.1\|WP_094082592.1\|1279496_1280393_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP022571.1\|WP_094082598.1\|1287500_1290428_+\|hypothetical-protein	gnl\|CDD\|187832	cd09701, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, inactivated palm domain and Zn-ribbon; signature gene for type III.	5.20464e-133
NZ_CP022571.1\|WP_094082602.1\|1295705_1297109_+\|argininosuccinate-lyase	gnl\|CDD\|179143	PRK00855, PRK00855, argininosuccinate lyase; Provisional.	0
NZ_CP022571.1\|WP_094082603.1\|1297146_1299216_-\|carboxy-terminal-processing-peptidase	gnl\|CDD\|236873	PRK11186, PRK11186, carboxy terminal-processing peptidase.	0
NZ_CP022571.1\|WP_094082607.1\|1302498_1302927_-\|ribose-5-phosphate-isomerase-B	gnl\|CDD\|376799	pfam02502, LacAB_rpiB, Ribose/Galactose Isomerase. This family of proteins contains the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB).	8.66088e-77
NZ_CP022571.1\|WP_167375033.1\|1305087_1305630_-\|5-formyltetrahydrofolate-cyclo-ligase	gnl\|CDD\|274270	TIGR02727, Uncharacterized_protein_YqgN, 5,10-methenyltetrahydrofolate synthetase. This enzyme, 5,10-methenyltetrahydrofolate synthetase, is also called 5-formyltetrahydrofolate cycloligase. Function of bacterial proteins in this family was inferred originally from the known activity of eukaryotic homologs. Recently, activity was shown explicitly for the member from Mycoplasma pneumonia. Members of this family from alpha- and gamma-proteobacteria, designated ygfA, are often found in an operon with 6S structural RNA, and show a similar pattern of high expression during stationary phase. The function may be to deplete folate to slow 1-carbon biosynthetic metabolism. [Central intermediary metabolism, One-carbon metabolism].	5.87357e-40
NZ_CP022571.1\|WP_094082599.1\|1290424_1291405_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|224255	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	3.45673e-39
NZ_CP022571.1\|WP_094082596.1\|1285319_1286432_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	gnl\|CDD\|187788	cd09657, Cmr1_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	3.38797e-18
NZ_CP022571.1\|WP_094082608.1\|1302923_1305062_-\|polyphosphate-kinase-1	gnl\|CDD\|235469	PRK05443, PRK05443, polyphosphate kinase; Provisional.	0
NZ_CP022571.1\|WP_094082606.1\|1301674_1302364_-\|hypothetical-protein	gnl\|CDD\|341406	cd09837, CBS_pair_chlorobiales, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in chlorobiales. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	1.53426e-14
NZ_CP022571.1\|WP_094082604.1\|1299355_1300330_+\|class-II-fructose-1,6-bisphosphate-aldolase	gnl\|CDD\|180829	PRK07084, PRK07084, class II fructose-1,6-bisphosphate aldolase.	0
NZ_CP022571.1\|WP_094082593.1\|1280684_1281680_-\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	gnl\|CDD\|187890	cd09760, Cas6_III, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex.	2.83061e-11
NZ_CP022571.1\|WP_167375032.1\|1286421_1287504_+\|hypothetical-protein	gnl\|CDD\|187857	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily proteins.	2.61282e-11
NZ_CP022571.1\|WP_094082605.1\|1300410_1301637_-\|amidohydrolase	gnl\|CDD\|349882	cd03886, M20_Acy1, M20 Peptidase Aminoacylase 1 family. Peptidase M20 family, Aminoacylase 1 (ACY1; hippuricase; acylase I; amido acid deacylase; IAA-amino acid hydrolase; dehydropeptidase II; N-acyl-L-amino-acid amidohydrolase; EC 3.5.1.14) subfamily. ACY1 is the most abundant of the aminoacylases, a class of zinc binding homodimeric enzymes involved in the hydrolysis of N-acetylated proteins. It is encoded by the aminoacylase 1 gene (Acy1) on chromosome 3p21 that comprises 15 exons. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in the protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity; substrates include indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. ACY1 breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine). ACY1 appears to physically interact with Sphingosine kinase type 1 (SphK1) and may influence its physiological functions; SphK1 and its product sphingosine-1-phosphate have been shown to promote cell growth and inhibit apoptosis of tumor cells. Strong expression of the human gene and its mouse ortholog Acy1 in brain, liver, and kidney, suggest a role of the enzyme in amino acid metabolism of these organs. Defects in ACY1 are the cause of aminoacylase-1 deficiency (ACY1D), resulting in a metabolic disorder manifesting encephalopathy and psychomotor delay.	4.88824e-155
NZ_CP022571.1\|WP_094082611.1\|1306583_1307915_+\|dihydroorotase	gnl\|CDD\|236479	PRK09357, pyrC, dihydroorotase; Validated.	0
NZ_CP022571.1\|WP_094082610.1\|1305834_1306548_+\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	1.22556e-64

>NZ_CP022571.1|WP_094082601.1|1291804_1292668_+|hypothetical-protein
MTAWKVFHVVFRLKAPMHIGCGKSGNLQRTYPFVTGRVFWGAVTARITRNNPEALRQHGQQAYRLIGDLVHQDLAYTYLYPAVKGSSGFEVQWPWAHGFISRHIRTYASTALAYPEQQAEEASLHETEYLTPFTCDTGEQVYLRGYLFAKESSTLQWQTALGKLQFGGERCYGWGDVEMISHDDQTTTSELFDGQARFIDGDFPVIELSDSSEGRLLAHTEADNCQAHGLTEPLVGREWRSGNPVNRHAGQHVAFNAFCFKPGSAVTSLPCRFQIGKYGIWSPEPSP
>NZ_CP022571.1|WP_094082600.1|1291415_1291808_+|hypothetical-protein
MKNLDYLAAKHAQKLAEQGDMETTVTKALGVLQEHGVYACFLYLLAKEKEGNKGKSTAGRMIGLLQESGLVPDEAIPEKPTDILHYVNEHISSAKLKKLLLIKDLLELMLVYSRYHANAMEPAESTEESI
>NZ_CP022571.1|WP_094082599.1|1290424_1291405_+|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MTTSGRTPDYQRLTYLFMCTDPVHVGTGGYRLGRVDNSIVRDPGTNVPKIPGSSLHGAARAYAASVLNRPSCAGQGNPKRNDTRQNGQSGHCGVCPVCYTFGYSKNTDDQSAYSGTVNVFDAEILLFPVHSLEGPVWITTKSRLERLSGAEMASLSQPEHEESVIPLFETTENILTLGWLVLAIQPQNPEEAVGQLPGTLPEQIANHIVLVHENLFSNIVNSNLEIRTSVAINPERGAAEDGALFTYEAIPRTTILAADVVIDDYHQLHSPDNGTAACINPQEVLEGGLRLISWLGVGGMGTRGFGRMEMLEQPEPEHYRQEETDD
>NZ_CP022571.1|WP_094082598.1|1287500_1290428_+|hypothetical-protein
MTDRTEPSGLKLPDSQRQAILYLEILGLIHDLGKLTDGFIKKEAEGASTNEKKYEYRFFVDPLKLYTDKKPGETITEWQQTAHDALCAFKLRTDLTDSLMSLSFTAWDESDYSLAELVPFLSRTEYWRKNDQWIRELGKSMQPGSLIGFLHGIAHFDKESSGVHFSKQASTDTWRSTPFGYDVEQLPVGPAENLTTVFQQLPLSHVKIHEATQSAERREAWFDLMEKGLRKGLADTCRPINDVTLWDWGYLVASLAKAASYYLFNHGWPESLEHLPFRTLRINLDKLRLYADSDGITDLLGKQNAIDEAYRKVRQYIEFDLALGNRIHHDETGEYYLIPGILPSKDPTTALRQSIQDIFRQESLEDCLPRVHFGQEVTAGELDGNDRMEAVKHLLVNPRQNAESESLEAPVQYDNNLCLFEGEWSTGKPENAERCSVCGLRPVGYPATGDNPETEKNLQPWAREKKAKERHLCRICLNRRGRRAKKWAEEWAIHLHDHAPPTTVWADEAADDNGRIALFVGCFGLKHWLDGSALETTRLSGNNGKNPSPARLFRITETTRSFWSEVNTEVLPEAVTAESTRLVLTPASTEGLDLGSFHTYVVESRDIRISVVWDSERKYFLSVENLSGLMKRHGYSQDMLSMMKRLQNSFNGRECLLFQPSSYGNASCRLSSILFRTACLYPGYYRPIIPLLAEPGVCMNLIPADKAIDVSMNVLEKYQEEMNRVQDRLPMGIGLVFFPRRTPVRTVMEAGRAMLKMLKDKPETWVVTGKKDIDNNVDITFDDEKNSNITLSYETLSGRNTGPRDTWHLWCLDRESTPKKINELSMKQTVLIYPGRFDFEFLDTSGRRFDIHYDEQGRRPRNTRPFYLTDIQRFTGLWQHIRSLSKSQIHQVIELIETKRTEWRIAPGTTDERTEVFRKFVQSTLADAEWPVSHSFHTISEREALVQAGVDGVLTDIVELYLSILKSQPTENPKA
>NZ_CP022571.1|WP_167375032.1|1286421_1287504_+|hypothetical-protein
MGHDYAAFQYRRLKDLLEELDTTSNQLKNRDKRKRKEAEKKVREIASEAVGIDAHTAYLWFAAQTDSQQDETRIKTLTSELRQQWLNRPVQQYPGQPHGIPAVPGGDRFDLLPPFSFVLSFQFELHKPFLSKDDEAFHLLDNPVRKDRVFQTPMIAASGWKGALRYALWQLEYPENDSSVISMFGNPRECERHDELHAGRLQFFSSHFNNTANNIEYEVVTPHDREKGTVGRQGPILLETIMAEANNKADFAVVYIPLFHGNETHAEIIRDFRALVKGLHAMMTVYGFGAKTSSGFGIAKDAVRDGLISLSLPSSAAKEINDQPASNGLQPRVIKTLHFHTLSELCTTQLPLFFEKEEEA
>NZ_CP022571.1|WP_094082596.1|1285319_1286432_+|type-III-B-CRISPR-module-RAMP-protein-Cmr1
MPGSSTIVSIPLQTLTPLWTGGAQAGVVDRIHETGIIGSLRWWFEILVRSVGGKVLSPHEAILKLEDYKALNAGQKKDPVKLKQCGLCDVSLIFGATNWKRKFRLEIEDHTSDIHLRNISVNTGSGQPAKWFFKGPAREGNLTLKIIPLTRDRNLFDPAIIEGLVKFISDWGGFGARNQMGFGIVKPERHLDTRPLYDYLMRIDECTYNRQLPSLGNMFFARITSKEKKNFAAETTFVLKHALRKTIEVQEKKTAEPHTMNPDTPLSRFVMGAITPEKSAAKIYLSRPFEKEGTNTIRLWGWLPGESGHFSSRLSREGLLDLIYQHLRNNYSASPDDWIELKHSDAHQPDMQRRFLKLLLDIEEGNAHGT
>NZ_CP022571.1|WP_150132330.1|1283806_1285093_-|hypothetical-protein
MLTLIAKAIQAEERGNELARVSVHSTLTELNDFRPGYIYLVVENKTDTLLTVDRIEIAEYPDFIDIRKSSLDTTVVSRKKPVLVYPDKDTVNVGASGIYELFIEASDQLKPGKHLLLFNVLYHGWVPVETQQDTLSVIVRHPMTGSTTKTHEVEVKVFGEGEILGALSNAVTFLMMPGFIMVIVFAMAWKISAPASYQGKLPAWLKEAKIVDLQFWVIAITLSLIMARWIYPILTQLFTSGRRDYLYGYGFYDIVMMWGFSVLMGALSGLIAGGGVSLYRRISYRKAIHGNENPLEFLQKAVALGVKEAWLKKTTLKESGKSGYLIEEDDIEKESLWVIPRVHVLWQASADELYARFEDKIFDDKAILSDVLNTLVDGKKEGHEGKGLQGIEWEKSSHYIEKPLAVKKANLDSLKERENIFSSTMTGQ
>NZ_CP022571.1|WP_150132329.1|1282595_1283675_-|hypothetical-protein
MSTSLKVSFLWTRTFFELFDNSTAASSPFSFFFRPSDYKGKIKSLYTGKSSLTLPWKLTDHTNRTNWFWKYYLNDINPLTSPHDTVANRCFPLCVPVRKSLTRLIAVGSPPAFGMHDRASFEGFFYRHGIACVCTFTIHDCSSLDEAVLKAMCLRHEPLFSILGRKNNVSLTTVGDYCRNLLCQEVGMVNDWFDEDPFSLVTVVEGEGNQTVRQGCNIHRALEALASWDRSWRQRPLPVLSAHTISIKNNHMSDIMYGHANSRVLWIPRLFAPGNNYALVWYCRNLLMASMQVKSFRDFLVRADNLQRINSATRIGGYAREVKAILRNMEKGLKTYSTMSVCKQINNDAQLQRILSVYP
>NZ_CP022571.1|WP_094082593.1|1280684_1281680_-|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6
MYASFASLSIARFRFTIEPTEEIRLPEYKGSALRGGFGYAFKRATCITRDRFCEPCILKSSCAYHRVFESKVPPDTSERLRLGGDAPHPFVIEPPLTEQRYFQPGDRLTFSLVLFGGAVGQLPFFVYAFMILGESFGIGKGRGRFRLLGVEDENGKQLYDNGNLSGGCEVRTAGEIMNSTADGSAELTLRFETPLRMKTAYGREKKGLVTGMGDPASVRMLLKSLHHRAFVLNQLYGEGVKEETYNGRMFSPVDGDLEVVRADTFWYDWERYSQRQQRRMRLGGVMGEVTLGGTLQRYMPLLRLGQYLHVGKGTGFGLGKYRIAGDAAGSA
>NZ_CP022571.1|WP_094082592.1|1279496_1280393_+|hypothetical-protein
MKKQFLVGAIALFVLLCHSSAFAAIGQFTGSWENTDSNTRGITKLVISENGGKVSLQAWGKCHPQDCDWGKVPAYLYAPSVSSNPMQNGRVISAMFDKGFSQTLLIVRPSGNRLRVEVYTHFTDNSGRSDYTSTYTLKRATAGGAAIIQEDCIGFNPNNARVRNVNGSWKIVDGNHWMFDFGNNRAEAMAALRVIRHYRMNQSCFVGRPDPSFQYMLVSGQAPQGSMPGEDCVSFNPNNVQVRNVNGSWKIVDGSHWMFDFGNKKAEADQALAIIKKYGFNKSCFVGRPDPSFQYMRK
>NZ_CP022571.1|WP_094082602.1|1295705_1297109_+|argininosuccinate-lyase
MSTKKGNEKAEKELLWQSRFAEPFDREALLFSSSVDVDKALYQEDIRGSIAHVTMLSEEAIIPVEEARLIIEGLEDIEQEISSGALVPEWEDEDIHTVIENRLKEKIGPIAGKIHSGRSRNDQVATDTRLYLKRMISELDAALGSLKKLLVEKAETYRATIIFGYTHLQRAQPISAGHYYLAYFNMFHRDQERLYDLLKRVDVSPLGAAAFAGSTLPLNARRSMELLDFGSLFDNSIDAVSDRDIVIEFIAACSVVMMHLSRFCEDLILWSSSEFNYVEISDSFSTGSSIMPQKKNADIAELVRGKTGRVYGDLLNILTVMKGLPLSYNRDMQEDKPPLFDAAGTTLSCIRIFTRLLSNTRLNEERLARLTAGDLSLATEIAEYLVKKGLPFRDAHRITGRIVTRSIETDTPLPGLDLDAYREFSELFGEDLYDSLKPDSSVNSKKTHGSTSFSSVEEQLRNAAAKC
>NZ_CP022571.1|WP_094082603.1|1297146_1299216_-|carboxy-terminal-processing-peptidase
MFIHTRKILFLASALAVFLSLPFPEISRTAVSVPVKEPVLKPSPVQEEAERYLSRYLMQYHFRQLAVNDSLSREVLSRYLDELDESKSYFLASDIEVFRERYARSMDDEFLSGKADAGFYIYNRFLRQAREKMRYMIALFEKGGFDFTVQESMELKRDKAPWPATVQELRDLWRKEAKYQLLNLKYSGEEESDDPRKALIKRYRNRLSILEQQNAEDAFRAYTMALTTSFDPHTSYFSPGDFENFQIDISRSFEGIGAKLQSENEYTVIHEVIPGGPAFRSNLLKKGDRITGVGQGNKGEIVDIVGWRVNDVVKRIRGKKGSVVRLKILPASQGNKGPARIVEIVRDEVRLEEQSAKKEIIRLNGRKIGVITIPAFYLDFEGQSRNKPDYASTSRDVRKILGELRKENVEGIVLDLRNNGGGALEEAVKLTGLFIPDGPVVQIRNSQGGKVVLEDEDPAVVYDGPLVVLVNRYSASASEILAAAIQDYGRGVVIGGRTFGKGTVQSIMKIRRPFNFIYKADDLGQLKLTVAKFYRISGESTQHMGVKPDISFPSLIDSEVVGEDNYTSSLPWDVISPARYSRTSWLTGADVRDLRERFTQRNANDSLYSRYVRDLAVLNGFRKKESVPLFEPAFKAEMERIRSFEAQWSKEDQPDILLNRSAAVVVDMADLSGNRLPGAEQAPWQAEKK
>NZ_CP022571.1|WP_094082604.1|1299355_1300330_+|class-II-fructose-1,6-bisphosphate-aldolase
MQKKPVGYKELGLVNSRKLFEKAVTGGYAIPAYNFNNLEQLQAIVMACVETKSPVILQVSKGARNYANETLLRHLARGAVEYAEELGSPVPIVLHLDHGDTFELCKDCIDSGFSSVMIDGSHLDYDENVALTRKVVEYAHTHDVTVEGELGVLAGIEDEVSAETHTYTQPEEVEDFVSKTGVDSLAISIGTSHGAFKFKPGEDPKIRLDILEEIEQRIPGFPIVLHGSSSVPQDLVRTINEHGGKLKDAIGIGEDQLREAARSAVCKINIDSDGRLAMTAAVRKVLDEHPEEFDPRKYLGPARDALKVLYMHKIRNVLGSDGKA
>NZ_CP022571.1|WP_094082605.1|1300410_1301637_-|amidohydrolase
MTYNPSVLRQRIRDKAAELHPGIVSIRRDIHMHPELSFREFRTTALVREYLLGLGLRIEHEYLETGVVARLESGTEAQRLPLVALRADMDALPVPEENSHDFCSVEKGVMHACGHDMHTAILMGAAAILASMKEQLPGDVLFIFQPAEEKAPGGAVPLIEAGLFRDYDPSAIFALHCFPHILAGNVAVREGSLMAAADELYITVHGEGGHASAPHKASDPVLGAAHIVTAVQHLVSRASSPYEPAVVSISSIQGGSATNVIPGRVSMSGTMRSMSEELRALLQKRLAGTVEHIAAGLGVRGELDIVSGYPVLVNDPETSRFVRSELEGFLGREHVEESEPLMTAEDFSSYLRYCPGTFIQLGTGRPGQSRGNALHSPFFNPDESALRTGMEVMSCVALGWLEKSVGEG
>NZ_CP022571.1|WP_094082606.1|1301674_1302364_-|hypothetical-protein
MTIVHRYIDVDYPVFQSDDKALDVLARLDELDLGEAPVLKDGKLFALVSSGELRRALAPAGGEASGLLVGDMRFEIPESVRPDVHLLDVFPCLCRERSKNLLAISGDDGAFVGVAPKMPLLRAIASLFHFDEKGATIEIEVPALGVKLSEIIGVLEKNEATVLSFGVAVPDPGAQSMVITFRLRTSDSFRLAKTLEKYGYAVHFATPSSDGGVDELREKALEFMRYIDM
>NZ_CP022571.1|WP_094082607.1|1302498_1302927_-|ribose-5-phosphate-isomerase-B
MRIAVGSDHAGYEFKKTVSAWLERNGHEVNDMGPYSEESVDYPDYARKVGEAVAKGECDQGVLLCGTGIGVSISANKIPGIRAALACKPEFATLARQHNNANVLCFSARFTDAPTIEQSLENWFAAEFEGGRHERRVAKIEP
>NZ_CP022571.1|WP_094082608.1|1302923_1305062_-|polyphosphate-kinase-1
MSKTVETVPVSEKKRDFLNPGYYVNRELGWIEFNQRVLEEALSPDAHPLLERVKFISIFSSNLDEFFMIRVAGLEDQYEAGIQDRSVDGLTPMEQLEEIRERIMVQLRRRNDCFYEDLCPKLSSQGIEFVGYDSLTVAQQEGLQRYFRHEIFPVLTPLAVDPGHPFPFVSNLSLNLAVELEDLETQLLKFARVKVPSILPRILRLDAVEGLDFGDGRIRLLWLEDLIMKNLGQLFPHMRIVQCHPFRIIRDADIEIEEDEAGDLLESIEQGIRSRRYGKVVRLDVTPSMPGSMRRILMKNLEVQPRNLYEIEGALGLSGLMEMMAIERPALKDEPFAPHNPLEEKFGGDVFAAIRQGDQLLYHPYDSFQPVVDLIDQAAKDPQVLSIKQTLYRVGGNSPVVESLMNAVEARKQVAVLVELKARFDEENNIGWARALEDVGAHVVYGLVGLKTHAKLTLIVRREHDRLVRYLHLGTGNYNPSTAKIYTDYSYLTANEELANDVSELFNALTGYSKHTSYRKLIVSPINTRKRIIEMIDREIDWHRKQGKGRIIMKMNALVDRKTIQALYRASCEGVSIDLIIRGICCLVPGIEGVSENIRVVSVIGRFLEHSRAYYFHNGGMDELFLGSADMMPRNLDHRVEALFPIMDKEMVETVKSELELILYDNVKAWRMMPDGSYARVADDRPKVNSQNVFLNQASMKKSISKFKVNGL
>NZ_CP022571.1|WP_167375033.1|1305087_1305630_-|5-formyltetrahydrofolate-cyclo-ligase
MRNVREAMSVTEWESSSGMAAANAAGLPEMLGAGSVMLYLAMAERREVDTAPLVRMIGGGKERALYMPLCSGDSLCAVPFREGDPLFPGAFGQPEPVGGCVDVVPDVLVLPVVAVDARGNRLGYGKGFYDRFISGLRRKGGEPFLLALAFSFQIVDSLPKDPWDQAVDCIVTEKEVMRIR
>NZ_CP022571.1|WP_094082610.1|1305834_1306548_+|fumarylacetoacetate-hydrolase-family-protein
MNQPSSRHPEPSSIFCVGKNYRLHAEEMRRWESAEGAEAERPEEEPIIFLKSPSALSTDGTTTIPSLWGKPVSNEMHYEAELVLLVGSDASDIGEKDAGSCIAGYGVGLDMTLRDVQIAAKKKGNPWFKSKGFKKSALVSGFVPASEVSGAEALAFELRLNDRIVQRGDPRKMLFGCSYLISYLSYIYGLRAGDLIFTGTPEGVGPATRGDRLTASLHGNGNGAAVGMLAGFSVTVA
>NZ_CP022571.1|WP_094082611.1|1306583_1307915_+|dihydroorotase
MAIIFQNARLINPAQNLDMQGSVRVSLNGMIDSIAFAPETLEAGPDDRVVEMNGKIVASGLFDMHCHFREPGQEYKETLETGSRAAVAGGFTGVALMPNTKPVIDGPLGAAYLRHNARELPIDIEIVSAMTLESRGETLAPFGKLSSYGVKAVSDDGRAVPDSRMMRLVFEYAASFDLLLIQHCEDASLGEGGVMNEGAYSALLGLKGIPEAAETITLSRDLLLMEYLQAHKLNPPVSTPKYHVAHVSTRKALDLVRQAKADGMQVTCEVTPHHFTLTDQDLYEAGEKGNFIMKPPLSSRDNRDAVLEALADGVIDAIATDHAPHARHEKECPPDQAAFGVIGLETSVGLTFSELVHTGRINEYRAIELLSSNPRTIMGLPPVLFEPGQPANFTFIDPEENWTFTESDIRSKGRNSPFLGRTMKGRPLGIYHKGALHGFAQDR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP022571_3	3.17\|1294770\|34\|NZ_CP022571\|CRISPRCasFinder	1294770-1294803	34	NZ_CP007794	Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence	900661-900694	7	0.794
NZ_CP022571_3	3.3\|1293822\|35\|NZ_CP022571\|CRISPRCasFinder	1293822-1293856	35	NC_013857	Azospirillum sp. B510 plasmid pAB510c, complete sequence	64264-64298	9	0.743
NZ_CP022571_3	3.17\|1294770\|34\|NZ_CP022571\|CRISPRCasFinder	1294770-1294803	34	MN692672	Pseudomonas phage vB_PaeP_Lx18, complete genome	18564-18597	9	0.735
NZ_CP022571_3	3.17\|1294770\|34\|NZ_CP022571\|CRISPRCasFinder	1294770-1294803	34	MN615699	Pseudomonas phage vB_PaeP_SPCG, complete genome	2855-2888	9	0.735
NZ_CP022571_3	3.17\|1294770\|34\|NZ_CP022571\|CRISPRCasFinder	1294770-1294803	34	MN615698	Pseudomonas phage vB_PaeP_SPCB, complete genome	3039-3072	9	0.735
NZ_CP022571_3	3.17\|1294770\|34\|NZ_CP022571\|CRISPRCasFinder	1294770-1294803	34	LN610580	Pseudomonas phage vB_PaeP_PAO1_1-15pyo, complete genome	2869-2902	9	0.735
NZ_CP022571_3	3.17\|1294770\|34\|NZ_CP022571\|CRISPRCasFinder	1294770-1294803	34	NC_011105	Pseudomonas phage PT5, complete genome	2868-2901	9	0.735
NZ_CP022571_3	3.17\|1294770\|34\|NZ_CP022571\|CRISPRCasFinder	1294770-1294803	34	MN602045	Pseudomonas phage vB_PaeP_ASP23, complete genome	14241-14274	9	0.735
NZ_CP022571_3	3.23\|1293822\|36\|NZ_CP022571\|CRT,PILER-CR	1293822-1293857	36	NC_013857	Azospirillum sp. B510 plasmid pAB510c, complete sequence	64264-64299	9	0.75
NZ_CP022571_3	3.17\|1294770\|34\|NZ_CP022571\|CRISPRCasFinder	1294770-1294803	34	MH979674	Pseudomonas phage RLP, complete genome	31616-31649	10	0.706
NZ_CP022571_3	3.17\|1294770\|34\|NZ_CP022571\|CRISPRCasFinder	1294770-1294803	34	KC969441	UNVERIFIED: Pseudomonas phage MBL, complete genome	2658-2691	10	0.706
NZ_CP022571_3	3.17\|1294770\|34\|NZ_CP022571\|CRISPRCasFinder	1294770-1294803	34	NC_009935	Pseudomonas phage LKD16, complete genome	2900-2933	10	0.706
NZ_CP022571_3	3.17\|1294770\|34\|NZ_CP022571\|CRISPRCasFinder	1294770-1294803	34	NC_047852	Pseudomonas phage phiNFS, complete genome	2545-2578	10	0.706
NZ_CP022571_3	3.17\|1294770\|34\|NZ_CP022571\|CRISPRCasFinder	1294770-1294803	34	NC_047953	Pseudomonas phage vB_PaeP_130_113, complete genome	3058-3091	10	0.706
NZ_CP022571_3	3.17\|1294770\|34\|NZ_CP022571\|CRISPRCasFinder	1294770-1294803	34	EU236438	Pseudomonas phage PT2, complete genome	2868-2901	10	0.706
NZ_CP022571_3	3.17\|1294770\|34\|NZ_CP022571\|CRISPRCasFinder	1294770-1294803	34	FN263372	Pseudomonas phage phikF77, complete genome	2564-2597	10	0.706
NZ_CP022571_3	3.17\|1294770\|34\|NZ_CP022571\|CRISPRCasFinder	1294770-1294803	34	NC_022091	Pseudomonas phage MPK7, complete genome	2861-2894	10	0.706
NZ_CP022571_3	3.17\|1294770\|34\|NZ_CP022571\|CRISPRCasFinder	1294770-1294803	34	KX711710	Pseudomonas phage vB_Pae-TbilisiM32, complete genome	2868-2901	10	0.706
NZ_CP022571_3	3.17\|1294770\|34\|NZ_CP022571\|CRISPRCasFinder	1294770-1294803	34	MN901924	Pseudomonas phage vB_PaeP_PE3, complete genome	2908-2941	10	0.706
NZ_CP022571_3	3.17\|1294770\|34\|NZ_CP022571\|CRISPRCasFinder	1294770-1294803	34	AM265638	Bacteriophage LKD16 complete genome, specific host Pseudomonas aeruginosa	2900-2933	10	0.706
NZ_CP022571_3	3.17\|1294770\|34\|NZ_CP022571\|CRISPRCasFinder	1294770-1294803	34	MN871483	UNVERIFIED: Pseudomonas phage PaSz-8_45_42k, complete genome	40454-40487	10	0.706
NZ_CP022571_3	3.37\|1294770\|35\|NZ_CP022571\|CRT,PILER-CR	1294770-1294804	35	MN692672	Pseudomonas phage vB_PaeP_Lx18, complete genome	18563-18597	10	0.714
NZ_CP022571_3	3.37\|1294770\|35\|NZ_CP022571\|CRT,PILER-CR	1294770-1294804	35	MN615699	Pseudomonas phage vB_PaeP_SPCG, complete genome	2854-2888	10	0.714
NZ_CP022571_3	3.37\|1294770\|35\|NZ_CP022571\|CRT,PILER-CR	1294770-1294804	35	MN615698	Pseudomonas phage vB_PaeP_SPCB, complete genome	3038-3072	10	0.714
NZ_CP022571_3	3.37\|1294770\|35\|NZ_CP022571\|CRT,PILER-CR	1294770-1294804	35	LN610580	Pseudomonas phage vB_PaeP_PAO1_1-15pyo, complete genome	2868-2902	10	0.714
NZ_CP022571_3	3.37\|1294770\|35\|NZ_CP022571\|CRT,PILER-CR	1294770-1294804	35	NC_011105	Pseudomonas phage PT5, complete genome	2867-2901	10	0.714
NZ_CP022571_3	3.37\|1294770\|35\|NZ_CP022571\|CRT,PILER-CR	1294770-1294804	35	MN602045	Pseudomonas phage vB_PaeP_ASP23, complete genome	14241-14275	10	0.714
NZ_CP022571_3	3.11\|1294365\|34\|NZ_CP022571\|CRISPRCasFinder	1294365-1294398	34	NZ_CP023549	Rhodobacter sp. CZR27 plasmid unnamed1, complete sequence	610762-610795	11	0.676
NZ_CP022571_3	3.37\|1294770\|35\|NZ_CP022571\|CRT,PILER-CR	1294770-1294804	35	MH979674	Pseudomonas phage RLP, complete genome	31615-31649	11	0.686
NZ_CP022571_3	3.37\|1294770\|35\|NZ_CP022571\|CRT,PILER-CR	1294770-1294804	35	KC969441	UNVERIFIED: Pseudomonas phage MBL, complete genome	2657-2691	11	0.686
NZ_CP022571_3	3.37\|1294770\|35\|NZ_CP022571\|CRT,PILER-CR	1294770-1294804	35	NC_009935	Pseudomonas phage LKD16, complete genome	2899-2933	11	0.686
NZ_CP022571_3	3.37\|1294770\|35\|NZ_CP022571\|CRT,PILER-CR	1294770-1294804	35	NC_047852	Pseudomonas phage phiNFS, complete genome	2544-2578	11	0.686
NZ_CP022571_3	3.37\|1294770\|35\|NZ_CP022571\|CRT,PILER-CR	1294770-1294804	35	NC_047953	Pseudomonas phage vB_PaeP_130_113, complete genome	3057-3091	11	0.686
NZ_CP022571_3	3.37\|1294770\|35\|NZ_CP022571\|CRT,PILER-CR	1294770-1294804	35	EU236438	Pseudomonas phage PT2, complete genome	2867-2901	11	0.686
NZ_CP022571_3	3.37\|1294770\|35\|NZ_CP022571\|CRT,PILER-CR	1294770-1294804	35	FN263372	Pseudomonas phage phikF77, complete genome	2563-2597	11	0.686
NZ_CP022571_3	3.37\|1294770\|35\|NZ_CP022571\|CRT,PILER-CR	1294770-1294804	35	NC_022091	Pseudomonas phage MPK7, complete genome	2860-2894	11	0.686
NZ_CP022571_3	3.37\|1294770\|35\|NZ_CP022571\|CRT,PILER-CR	1294770-1294804	35	KX711710	Pseudomonas phage vB_Pae-TbilisiM32, complete genome	2867-2901	11	0.686
NZ_CP022571_3	3.37\|1294770\|35\|NZ_CP022571\|CRT,PILER-CR	1294770-1294804	35	MN901924	Pseudomonas phage vB_PaeP_PE3, complete genome	2907-2941	11	0.686
NZ_CP022571_3	3.37\|1294770\|35\|NZ_CP022571\|CRT,PILER-CR	1294770-1294804	35	AM265638	Bacteriophage LKD16 complete genome, specific host Pseudomonas aeruginosa	2899-2933	11	0.686
NZ_CP022571_3	3.37\|1294770\|35\|NZ_CP022571\|CRT,PILER-CR	1294770-1294804	35	MN871483	UNVERIFIED: Pseudomonas phage PaSz-8_45_42k, complete genome	40454-40488	11	0.686

1. spacer 3.17|1294770|34|NZ_CP022571|CRISPRCasFinder matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 7, identity: 0.794

cagatgggcgttttgtcgttgcagacgttgtccg--	CRISPR spacer
cagatcggcgttttgtcgttccag--gttggcgatg	Protospacer
***** ************** ***  **** * .

2. spacer 3.3|1293822|35|NZ_CP022571|CRISPRCasFinder matches to NC_013857 (Azospirillum sp. B510 plasmid pAB510c, complete sequence) position: , mismatch: 9, identity: 0.743

aacaaaccggtagtcgaggatccggcgatcaagcg	CRISPR spacer
gtcgaggcggtcgtcgagaatccggcgatcaaggc	Protospacer
. *.*. **** ******.**************

3. spacer 3.17|1294770|34|NZ_CP022571|CRISPRCasFinder matches to MN692672 (Pseudomonas phage vB_PaeP_Lx18, complete genome) position: , mismatch: 9, identity: 0.735

cagatgggcgttttgtcgttgcagacgttgtccg	CRISPR spacer
agccagggcgatttgtcgttgcaggcgttgtttg	Protospacer
 .   ***** *************.******..*

4. spacer 3.17|1294770|34|NZ_CP022571|CRISPRCasFinder matches to MN615699 (Pseudomonas phage vB_PaeP_SPCG, complete genome) position: , mismatch: 9, identity: 0.735

cagatgggcgttttgtcgttgcagacgttgtccg	CRISPR spacer
agccagggcgatttgtcgttgcaggcgttgtttg	Protospacer
 .   ***** *************.******..*

5. spacer 3.17|1294770|34|NZ_CP022571|CRISPRCasFinder matches to MN615698 (Pseudomonas phage vB_PaeP_SPCB, complete genome) position: , mismatch: 9, identity: 0.735

cagatgggcgttttgtcgttgcagacgttgtccg	CRISPR spacer
agccagggcgatttgtcgttgcaggcgttgtttg	Protospacer
 .   ***** *************.******..*

6. spacer 3.17|1294770|34|NZ_CP022571|CRISPRCasFinder matches to LN610580 (Pseudomonas phage vB_PaeP_PAO1_1-15pyo, complete genome) position: , mismatch: 9, identity: 0.735

cagatgggcgttttgtcgttgcagacgttgtccg	CRISPR spacer
agccagggcgatttgtcgttgcaggcgttgtttg	Protospacer
 .   ***** *************.******..*

7. spacer 3.17|1294770|34|NZ_CP022571|CRISPRCasFinder matches to NC_011105 (Pseudomonas phage PT5, complete genome) position: , mismatch: 9, identity: 0.735

cagatgggcgttttgtcgttgcagacgttgtccg	CRISPR spacer
agccagggcgatttgtcgttgcaggcgttgtttg	Protospacer
 .   ***** *************.******..*

8. spacer 3.17|1294770|34|NZ_CP022571|CRISPRCasFinder matches to MN602045 (Pseudomonas phage vB_PaeP_ASP23, complete genome) position: , mismatch: 9, identity: 0.735

cagatgggcgttttgtcgttgcagacgttgtccg	CRISPR spacer
agccagggcgatttgtcgttgcaggcgttgtttg	Protospacer
 .   ***** *************.******..*

9. spacer 3.23|1293822|36|NZ_CP022571|CRT,PILER-CR matches to NC_013857 (Azospirillum sp. B510 plasmid pAB510c, complete sequence) position: , mismatch: 9, identity: 0.75

aacaaaccggtagtcgaggatccggcgatcaagcgc	CRISPR spacer
gtcgaggcggtcgtcgagaatccggcgatcaaggcc	Protospacer
. *.*. **** ******.**************  *

10. spacer 3.17|1294770|34|NZ_CP022571|CRISPRCasFinder matches to MH979674 (Pseudomonas phage RLP, complete genome) position: , mismatch: 10, identity: 0.706

cagatgggcgttttgtcgttgcagacgttgtccg	CRISPR spacer
agccagggcgatttggcgttgcagacgttgcttg	Protospacer
 .   ***** **** **************...*

11. spacer 3.17|1294770|34|NZ_CP022571|CRISPRCasFinder matches to KC969441 (UNVERIFIED: Pseudomonas phage MBL, complete genome) position: , mismatch: 10, identity: 0.706

cagatgggcgttttgtcgttgcagacgttgtccg	CRISPR spacer
agccagggcgatttggcgttgcagacgttgcttg	Protospacer
 .   ***** **** **************...*

12. spacer 3.17|1294770|34|NZ_CP022571|CRISPRCasFinder matches to NC_009935 (Pseudomonas phage LKD16, complete genome) position: , mismatch: 10, identity: 0.706

cagatgggcgttttgtcgttgcagacgttgtccg	CRISPR spacer
ggccagggcgatttgacgttgcagacgttgcttg	Protospacer
 .   ***** **** **************...*

13. spacer 3.17|1294770|34|NZ_CP022571|CRISPRCasFinder matches to NC_047852 (Pseudomonas phage phiNFS, complete genome) position: , mismatch: 10, identity: 0.706

cagatgggcgttttgtcgttgcagacgttgtccg	CRISPR spacer
agccagggcgatttggcgttgcagacgttgcttg	Protospacer
 .   ***** **** **************...*

14. spacer 3.17|1294770|34|NZ_CP022571|CRISPRCasFinder matches to NC_047953 (Pseudomonas phage vB_PaeP_130_113, complete genome) position: , mismatch: 10, identity: 0.706

cagatgggcgttttgtcgttgcagacgttgtccg	CRISPR spacer
agccagggcgatttggcgttgcagacgttgcttg	Protospacer
 .   ***** **** **************...*

15. spacer 3.17|1294770|34|NZ_CP022571|CRISPRCasFinder matches to EU236438 (Pseudomonas phage PT2, complete genome) position: , mismatch: 10, identity: 0.706

cagatgggcgttttgtcgttgcagacgttgtccg	CRISPR spacer
agccagggcgatttggcgttgcagacgttgcttg	Protospacer
 .   ***** **** **************...*

16. spacer 3.17|1294770|34|NZ_CP022571|CRISPRCasFinder matches to FN263372 (Pseudomonas phage phikF77, complete genome) position: , mismatch: 10, identity: 0.706

cagatgggcgttttgtcgttgcagacgttgtccg	CRISPR spacer
agccagggcgatttgacgttgcagacgttgcttg	Protospacer
 .   ***** **** **************...*

17. spacer 3.17|1294770|34|NZ_CP022571|CRISPRCasFinder matches to NC_022091 (Pseudomonas phage MPK7, complete genome) position: , mismatch: 10, identity: 0.706

cagatgggcgttttgtcgttgcagacgttgtccg	CRISPR spacer
agccagggcgatttggcgttgcagacgttgcttg	Protospacer
 .   ***** **** **************...*

18. spacer 3.17|1294770|34|NZ_CP022571|CRISPRCasFinder matches to KX711710 (Pseudomonas phage vB_Pae-TbilisiM32, complete genome) position: , mismatch: 10, identity: 0.706

cagatgggcgttttgtcgttgcagacgttgtccg	CRISPR spacer
agccagggcgatttggcgttgcagacgttgcttg	Protospacer
 .   ***** **** **************...*

19. spacer 3.17|1294770|34|NZ_CP022571|CRISPRCasFinder matches to MN901924 (Pseudomonas phage vB_PaeP_PE3, complete genome) position: , mismatch: 10, identity: 0.706

cagatgggcgttttgtcgttgcagacgttgtccg	CRISPR spacer
agccagggcgatttggcgttgcagacgttgcttg	Protospacer
 .   ***** **** **************...*

20. spacer 3.17|1294770|34|NZ_CP022571|CRISPRCasFinder matches to AM265638 (Bacteriophage LKD16 complete genome, specific host Pseudomonas aeruginosa) position: , mismatch: 10, identity: 0.706

cagatgggcgttttgtcgttgcagacgttgtccg	CRISPR spacer
ggccagggcgatttgacgttgcagacgttgcttg	Protospacer
 .   ***** **** **************...*

21. spacer 3.17|1294770|34|NZ_CP022571|CRISPRCasFinder matches to MN871483 (UNVERIFIED: Pseudomonas phage PaSz-8_45_42k, complete genome) position: , mismatch: 10, identity: 0.706

cagatgggcgttttgtcgttgcagacgttgtccg	CRISPR spacer
agccagggcgatttggcgttgcagacgttgcttg	Protospacer
 .   ***** **** **************...*

22. spacer 3.37|1294770|35|NZ_CP022571|CRT,PILER-CR matches to MN692672 (Pseudomonas phage vB_PaeP_Lx18, complete genome) position: , mismatch: 10, identity: 0.714

cagatgggcgttttgtcgttgcagacgttgtccgg	CRISPR spacer
agccagggcgatttgtcgttgcaggcgttgtttga	Protospacer
 .   ***** *************.******..*.

23. spacer 3.37|1294770|35|NZ_CP022571|CRT,PILER-CR matches to MN615699 (Pseudomonas phage vB_PaeP_SPCG, complete genome) position: , mismatch: 10, identity: 0.714

cagatgggcgttttgtcgttgcagacgttgtccgg	CRISPR spacer
agccagggcgatttgtcgttgcaggcgttgtttga	Protospacer
 .   ***** *************.******..*.

24. spacer 3.37|1294770|35|NZ_CP022571|CRT,PILER-CR matches to MN615698 (Pseudomonas phage vB_PaeP_SPCB, complete genome) position: , mismatch: 10, identity: 0.714

cagatgggcgttttgtcgttgcagacgttgtccgg	CRISPR spacer
agccagggcgatttgtcgttgcaggcgttgtttga	Protospacer
 .   ***** *************.******..*.

25. spacer 3.37|1294770|35|NZ_CP022571|CRT,PILER-CR matches to LN610580 (Pseudomonas phage vB_PaeP_PAO1_1-15pyo, complete genome) position: , mismatch: 10, identity: 0.714

cagatgggcgttttgtcgttgcagacgttgtccgg	CRISPR spacer
agccagggcgatttgtcgttgcaggcgttgtttga	Protospacer
 .   ***** *************.******..*.

26. spacer 3.37|1294770|35|NZ_CP022571|CRT,PILER-CR matches to NC_011105 (Pseudomonas phage PT5, complete genome) position: , mismatch: 10, identity: 0.714

cagatgggcgttttgtcgttgcagacgttgtccgg	CRISPR spacer
agccagggcgatttgtcgttgcaggcgttgtttga	Protospacer
 .   ***** *************.******..*.

27. spacer 3.37|1294770|35|NZ_CP022571|CRT,PILER-CR matches to MN602045 (Pseudomonas phage vB_PaeP_ASP23, complete genome) position: , mismatch: 10, identity: 0.714

cagatgggcgttttgtcgttgcagacgttgtccgg	CRISPR spacer
agccagggcgatttgtcgttgcaggcgttgtttga	Protospacer
 .   ***** *************.******..*.

28. spacer 3.11|1294365|34|NZ_CP022571|CRISPRCasFinder matches to NZ_CP023549 (Rhodobacter sp. CZR27 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.676

ggaatcgcgctgatgaatagcgcgatcacgttga	CRISPR spacer
cttgcggcggtgatgaataccgcgatcacgggaa	Protospacer
   .. *** ********* **********  .*

29. spacer 3.37|1294770|35|NZ_CP022571|CRT,PILER-CR matches to MH979674 (Pseudomonas phage RLP, complete genome) position: , mismatch: 11, identity: 0.686

cagatgggcgttttgtcgttgcagacgttgtccgg	CRISPR spacer
agccagggcgatttggcgttgcagacgttgcttga	Protospacer
 .   ***** **** **************...*.

30. spacer 3.37|1294770|35|NZ_CP022571|CRT,PILER-CR matches to KC969441 (UNVERIFIED: Pseudomonas phage MBL, complete genome) position: , mismatch: 11, identity: 0.686

cagatgggcgttttgtcgttgcagacgttgtccgg	CRISPR spacer
agccagggcgatttggcgttgcagacgttgcttga	Protospacer
 .   ***** **** **************...*.

31. spacer 3.37|1294770|35|NZ_CP022571|CRT,PILER-CR matches to NC_009935 (Pseudomonas phage LKD16, complete genome) position: , mismatch: 11, identity: 0.686

cagatgggcgttttgtcgttgcagacgttgtccgg	CRISPR spacer
ggccagggcgatttgacgttgcagacgttgcttga	Protospacer
 .   ***** **** **************...*.

32. spacer 3.37|1294770|35|NZ_CP022571|CRT,PILER-CR matches to NC_047852 (Pseudomonas phage phiNFS, complete genome) position: , mismatch: 11, identity: 0.686

cagatgggcgttttgtcgttgcagacgttgtccgg	CRISPR spacer
agccagggcgatttggcgttgcagacgttgcttga	Protospacer
 .   ***** **** **************...*.

33. spacer 3.37|1294770|35|NZ_CP022571|CRT,PILER-CR matches to NC_047953 (Pseudomonas phage vB_PaeP_130_113, complete genome) position: , mismatch: 11, identity: 0.686

cagatgggcgttttgtcgttgcagacgttgtccgg	CRISPR spacer
agccagggcgatttggcgttgcagacgttgcttga	Protospacer
 .   ***** **** **************...*.

34. spacer 3.37|1294770|35|NZ_CP022571|CRT,PILER-CR matches to EU236438 (Pseudomonas phage PT2, complete genome) position: , mismatch: 11, identity: 0.686

cagatgggcgttttgtcgttgcagacgttgtccgg	CRISPR spacer
agccagggcgatttggcgttgcagacgttgcttga	Protospacer
 .   ***** **** **************...*.

35. spacer 3.37|1294770|35|NZ_CP022571|CRT,PILER-CR matches to FN263372 (Pseudomonas phage phikF77, complete genome) position: , mismatch: 11, identity: 0.686

cagatgggcgttttgtcgttgcagacgttgtccgg	CRISPR spacer
agccagggcgatttgacgttgcagacgttgcttga	Protospacer
 .   ***** **** **************...*.

36. spacer 3.37|1294770|35|NZ_CP022571|CRT,PILER-CR matches to NC_022091 (Pseudomonas phage MPK7, complete genome) position: , mismatch: 11, identity: 0.686

cagatgggcgttttgtcgttgcagacgttgtccgg	CRISPR spacer
agccagggcgatttggcgttgcagacgttgcttga	Protospacer
 .   ***** **** **************...*.

37. spacer 3.37|1294770|35|NZ_CP022571|CRT,PILER-CR matches to KX711710 (Pseudomonas phage vB_Pae-TbilisiM32, complete genome) position: , mismatch: 11, identity: 0.686

cagatgggcgttttgtcgttgcagacgttgtccgg	CRISPR spacer
agccagggcgatttggcgttgcagacgttgcttga	Protospacer
 .   ***** **** **************...*.

38. spacer 3.37|1294770|35|NZ_CP022571|CRT,PILER-CR matches to MN901924 (Pseudomonas phage vB_PaeP_PE3, complete genome) position: , mismatch: 11, identity: 0.686

cagatgggcgttttgtcgttgcagacgttgtccgg	CRISPR spacer
agccagggcgatttggcgttgcagacgttgcttga	Protospacer
 .   ***** **** **************...*.

39. spacer 3.37|1294770|35|NZ_CP022571|CRT,PILER-CR matches to AM265638 (Bacteriophage LKD16 complete genome, specific host Pseudomonas aeruginosa) position: , mismatch: 11, identity: 0.686

cagatgggcgttttgtcgttgcagacgttgtccgg	CRISPR spacer
ggccagggcgatttgacgttgcagacgttgcttga	Protospacer
 .   ***** **** **************...*.

40. spacer 3.37|1294770|35|NZ_CP022571|CRT,PILER-CR matches to MN871483 (UNVERIFIED: Pseudomonas phage PaSz-8_45_42k, complete genome) position: , mismatch: 11, identity: 0.686

cagatgggcgttttgtcgttgcagacgttgtccgg	CRISPR spacer
agccagggcgatttggcgttgcagacgttgcttga	Protospacer
 .   ***** **** **************...*.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

543389 : 564470

Enterobacteria_phage(30.77%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_094082001.1\|543389_544112_+	NTP transferase domain-containing protein	G3MA50	Bacillus_virus	2.3e-12	28.1
WP_094082002.1\|544108_545305_+	L-2-hydroxyglutarate oxidase	NA	NA	NA	NA
WP_094082003.1\|545326_546304_+	SDR family oxidoreductase	A0A0F7LC08	uncultured_marine_virus	6.0e-40	36.7
WP_094082004.1\|546316_547462_+	DegT/DnrJ/EryC1/StrS family aminotransferase	A0A2K9L0G1	Tupanvirus	4.9e-33	25.6
WP_094082005.1\|547467_548346_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.8e-105	62.8
WP_167375009.1\|548489_549983_-	AMP-binding protein	A0A2H4PQM9	Staphylococcus_phage	1.7e-33	29.4
WP_094082007.1\|549975_550233_-	acyl carrier protein	NA	NA	NA	NA
WP_094082008.1\|550312_551263_-	NAD(+) synthase	E3SLH5	Synechococcus_phage	5.5e-14	36.1
WP_094082009.1\|551274_553179_-	asparagine synthase (glutamine-hydrolyzing)	F2Y1H0	Organic_Lake_phycodnavirus	2.2e-38	31.1
WP_167375010.1\|553226_553769_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_094082011.1\|554097_554652_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	1.0e-44	48.9
WP_094082012.1\|554793_555651_+	dTDP-4-dehydrorhamnose reductase	I7HXC9	Enterobacteria_phage	1.8e-32	34.8
WP_094082013.1\|555841_556699_+	dTDP-4-dehydrorhamnose reductase	I7HXC9	Enterobacteria_phage	4.4e-31	33.5
WP_094082014.1\|557453_558503_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.2e-86	49.7
WP_094082015.1\|558573_559017_-	hypothetical protein	NA	NA	NA	NA
WP_094082016.1\|559134_560559_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	1.1e-53	28.3
WP_094082017.1\|560681_560900_+	hypothetical protein	NA	NA	NA	NA
WP_094082019.1\|561227_564470_+\|tRNA	isoleucine--tRNA ligase	A0A2I2L3Y0	Orpheovirus	4.9e-171	35.0

DBSCAN-SWA_2

1512548 : 1519716

Indivirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_094082775.1\|1512548_1513886_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	1.1e-84	39.9
WP_094082776.1\|1513882_1514536_-	riboflavin synthase	A0A1V0SE20	Indivirus	1.8e-16	33.3
WP_094082777.1\|1514771_1515122_-	zinc-ribbon domain and TM2 domain-containing protein	M4ZS56	Bacillus_phage	2.0e-14	62.5
WP_094082778.1\|1515832_1516333_-	thiol peroxidase	NA	NA	NA	NA
WP_094082779.1\|1516467_1517253_-	ATP-binding cassette domain-containing protein	W5SAS9	Pithovirus	3.8e-13	26.8
WP_094083736.1\|1517498_1517915_-	DoxX family protein	NA	NA	NA	NA
WP_094082780.1\|1518048_1519119_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	6.7e-53	39.2
WP_094083737.1\|1519191_1519716_-	dCMP deaminase family protein	A0A142KBX9	Gordonia_phage	3.7e-28	42.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP022571

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection