CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP021403	Bordetella pertussis strain J473 chromosome, complete genome	4 crisprs	DEDDh,cas3,csa3,DinG	0	0	17	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP021403_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021403_1

250577-250661

Orphan

Consensus_repeat	Method
GGTGCCTGTCCCCGCGGGGACAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP021403_1

>merge|NZ_CP021403|1|250577-250661|CRISPRCasFinder
GGTGCCTGTCCCCGCGGGGACAGATACCGTCTTGGCCGTCAAGCGTTCATGGCGTATGACAGGGTGCCTGTCCCCGCGGGGACAG

>NZ_CP021403|1|1|250577-250661|CRISPRCasFinder
GGTGCCTGTCCCCGCGGGGACAG	ATACCGTCTTGGCCGTCAAGCGTTCATGGCGTATGACAG
GGTGCCTGTCCCCGCGGGGACAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021403.1\|WP_010929704.1\|248562_249264_-\|DnaA-regulatory-inactivator-Hda	unknown	unknown	gnl\|CDD\|236347
NZ_CP021403.1\|WP_003814356.1\|240321_241365_-\|TRAP-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270320
NZ_CP021403.1\|WP_003814351.1\|245048_246005_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270296
NZ_CP021403.1\|WP_010929706.1\|255682_256219_-\|bifunctional-alanine-racemase/tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	unknown	unknown	gnl\|CDD\|223873
NZ_CP021403.1\|WP_019247543.1\|254366_255752_-\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|182376
NZ_CP021403.1\|WP_010929709.1\|259942_260842_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176107
NZ_CP021403.1\|WP_003814324.1\|258894_259878_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein-BugE	unknown	unknown	gnl\|CDD\|270295
NZ_CP021403.1\|WP_003814355.1\|241535_243638_+\|TRAP-transporter-large-permease-subunit	unknown	unknown	gnl\|CDD\|129868
NZ_CP021403.1\|WP_003814358.1\|239534_240278_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP021403.1\|WP_010929701.1\|246023_246515_-\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	unknown	unknown	gnl\|CDD\|172582
NZ_CP021403.1\|WP_003814321.1\|260948_262703_+\|gamma-glutamyltransferase	unknown	unknown	gnl\|CDD\|223482
NZ_CP021403.1\|WP_010929702.1\|246511_247867_-\|polynucleotide-adenylyltransferase-PcnB	unknown	unknown	gnl\|CDD\|130997
NZ_CP021403.1\|WP_003814363.1\|238102_238513_+\|4-carboxymuconolactone-decarboxylase	unknown	unknown	gnl\|CDD\|131478
NZ_CP021403.1\|WP_010929707.1\|256370_257762_+\|class-II-fumarate-hydratase	unknown	unknown	gnl\|CDD\|234779
NZ_CP021403.1\|WP_003814337.1\|250671_251613_-\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	unknown	unknown	gnl\|CDD\|234626
NZ_CP021403.1\|WP_010929703.1\|247867_248566_-\|HAD-IB-family-hydrolase	unknown	unknown	gnl\|CDD\|319796
NZ_CP021403.1\|WP_003814332.1\|253585_254224_+\|membrane-protein	unknown	unknown	gnl\|CDD\|182775
NZ_CP021403.1\|WP_010929708.1\|257778_258759_-\|AEC-family-transporter	unknown	unknown	gnl\|CDD\|223751
NZ_CP021403.1\|WP_003814339.1\|249516_250566_+\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
NZ_CP021403.1\|WP_010929705.1\|251609_253499_-\|DNA-mismatch-repair-endonuclease-MutL	unknown	unknown	gnl\|CDD\|234630

Protein	Function_ID	Function_description	E-value
NZ_CP021403.1\|WP_010929704.1\|248562_249264_-\|DnaA-regulatory-inactivator-Hda	gnl\|CDD\|236347	PRK08903, PRK08903, DnaA regulatory inactivator Hda; Validated.	2.81236e-100
NZ_CP021403.1\|WP_003814356.1\|240321_241365_-\|TRAP-transporter-substrate-binding-protein	gnl\|CDD\|270320	cd13602, PBP2_TRAP_BpDctp6_7, Substrate-binding domain of a pyroglutamic acid binding DctP subfamily of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold. DctP6 and DctP7 groups of the TRAP transporters that involved in pyroglutamic acid transport. TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP; often called the P subunit) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process (the M subunit) and a smaller membrane of unknown function (the Q subunit). The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.99378e-85
NZ_CP021403.1\|WP_003814351.1\|245048_246005_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	6.01101e-118
NZ_CP021403.1\|WP_010929706.1\|255682_256219_-\|bifunctional-alanine-racemase/tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	gnl\|CDD\|223873	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only].	2.28113e-54
NZ_CP021403.1\|WP_019247543.1\|254366_255752_-\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|182376	PRK10319, PRK10319, N-acetylmuramoyl-L-alanine amidase AmiA.	1.25625e-84
NZ_CP021403.1\|WP_010929709.1\|259942_260842_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176107	cd08415, PBP2_LysR_opines_like, The C-terminal substrate-domain of LysR-type transcriptional regulators involved in the catabolism of opines and that of related regulators, contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate-domain of LysR-type transcriptional regulators, OccR and NocR, involved in the catabolism of opines and that of LysR for lysine biosynthesis which clustered together in phylogenetic trees. Opines, such as octopine and nopaline, are low molecular weight compounds found in plant crown gall tumors that are produced by the parasitic bacterium Agrobacterium. There are at least 30 different opines identified so far. Opines are utilized by tumor-colonizing bacteria as a source of carbon, nitrogen, and energy. NocR and OccR belong to the family of LysR-type transcriptional regulators that positively regulates the catabolism of nopaline and octopine, respectively. Both nopaline and octopalin are arginine derivatives. In Agrobacterium tumefaciens, NocR regulates expression of the divergently transcribed nocB and nocR genes of the nopaline catabolism (noc) region. OccR protein activates the occQ operon of the Ti plasmid in response to octopine. This operon encodes proteins required for the uptake and catabolism of octopine. The occ operon also encodes the TraR protein, which is a quorum-sensing transcriptional regulator of the Ti plasmid tra regulon. LysR is the transcriptional activator of lysA gene encoding diaminopimelate decarboxylase, an enzyme that catalyses the decarboxylation of diaminopimelate to produce lysine. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.62875e-38
NZ_CP021403.1\|WP_003814324.1\|258894_259878_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein-BugE	gnl\|CDD\|270295	cd13577, PBP2_BugE_Glu, Glutamate transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.	4.35876e-158
NZ_CP021403.1\|WP_003814355.1\|241535_243638_+\|TRAP-transporter-large-permease-subunit	gnl\|CDD\|129868	TIGR00786, TRAP_transporter_permease_protein_SiaT, TRAP transporter, DctM subunit. The Tripartite ATP-independent Periplasmic Transporter (TRAP-T) Family (TC 2.A.56)- DctM subunit TRAP-T family permeases generally consist of three components, and these systems have so far been found in Gram-negative bacteria, Gram-postive bacteria and archaea. Only one member of the family has been both sequenced and functionally characterized. This system is the DctPQM system of Rhodobacter capsulatus (Forward et al., 1997). DctP is a periplasmic dicarboxylate (malate, fumarate, succinate) binding receptor that is biochemically well-characterized. DctQ is an integral cytoplasmic membrane protein with 4 putative transmembrane a-helical spanners (TMSs). DctM is a second integral cytoplasmic membrane protein with 12 putative TMSs. These proteins have been shown to be both necessary and sufficient for the proton motive force-dependent uptake of dicarboxylates into R. capsulatus. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	2.77055e-96
NZ_CP021403.1\|WP_003814358.1\|239534_240278_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	5.58304e-45
NZ_CP021403.1\|WP_010929701.1\|246023_246515_-\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	gnl\|CDD\|172582	PRK14092, PRK14092, 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase.	2.78166e-87
NZ_CP021403.1\|WP_003814321.1\|260948_262703_+\|gamma-glutamyltransferase	gnl\|CDD\|223482	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism].	0
NZ_CP021403.1\|WP_010929702.1\|246511_247867_-\|polynucleotide-adenylyltransferase-PcnB	gnl\|CDD\|130997	TIGR01942, pcnB, poly(A) polymerase. This model describes the pcnB family of poly(A) polymerases (also known as plasmid copy number protein). These enzymes sequentially add adenosine nucleotides to the 3' end of RNAs, targeting them for degradation by the cell. This was originally described for anti-sense RNAs, but was later demonstrated for mRNAs as well. Members of this family are as yet limited to the gamma- and beta-proteobacteria, with putative members in the Chlamydiacae and spirochetes. This family has homology to tRNA nucleotidyltransferase (cca).	4.58369e-147
NZ_CP021403.1\|WP_003814363.1\|238102_238513_+\|4-carboxymuconolactone-decarboxylase	gnl\|CDD\|131478	TIGR02425, putative_gamma-carboxymuconolactone_decarboxylase, 4-carboxymuconolactone decarboxylase. Members of this family are 4-carboxymuconolactone decarboxylase, which catalyzes the third step in the catabolism of protocatechuate (and therefore the fourth step in the catabolism of para-hydroxybenzoate, of 3-hydroxybenzoate, of vanillate, etc.). Most members of this family are encoded within protocatechuate catabolism operons. This protein is sometimes found as a fusion protein with other enzymes of the pathway, as in Rhodococcus opacus, Streptomyces avermitilis, and Caulobacter crescentus. [Energy metabolism, Other].	1.36265e-47
NZ_CP021403.1\|WP_010929707.1\|256370_257762_+\|class-II-fumarate-hydratase	gnl\|CDD\|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0
NZ_CP021403.1\|WP_003814337.1\|250671_251613_-\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	gnl\|CDD\|234626	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed.	4.17279e-156
NZ_CP021403.1\|WP_010929703.1\|247867_248566_-\|HAD-IB-family-hydrolase	gnl\|CDD\|319796	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C. This family includes Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C, PgpC (previously named yfhB) which catalyzes the dephosphorylation of phosphatidylglycerol-phosphate (PGP) to phosphatidylglycerol (PG). This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	3.91431e-64
NZ_CP021403.1\|WP_003814332.1\|253585_254224_+\|membrane-protein	gnl\|CDD\|182775	PRK10847, PRK10847, DedA family protein.	1.10927e-69
NZ_CP021403.1\|WP_010929708.1\|257778_258759_-\|AEC-family-transporter	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	1.13912e-41
NZ_CP021403.1\|WP_003814339.1\|249516_250566_+\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NZ_CP021403.1\|WP_010929705.1\|251609_253499_-\|DNA-mismatch-repair-endonuclease-MutL	gnl\|CDD\|234630	PRK00095, mutL, DNA mismatch repair endonuclease MutL.	0

>NZ_CP021403.1|WP_003814339.1|249516_250566_+|phosphoribosylformylglycinamidine-cyclo-ligase
MTNQHSAPLTYRDAGVDIDAGDALVDRIKPLAARTMRPGVLAGIGGFGALFEVPKKFREPVLVSGTDGVGTKLRLAFDWNRHDTVGIDLVAMSVNDILVQGAEPLYFLDYFACGKLSVDTAAAVVGGIARGCELAGCALIGGETAEMPGMYPDGEYDLAGFAVGAVDKSAIIDGKSIQPGDVVLGLASSGAHSNGYSLVRKILERAGARPDQDFHGQPLVDVVMAPTRIYVKQVLAALDRHGPAIKGLAHITGGGLLDNVPRILQPGMAAQLQRDGWEMPKLFQWLQQQGSVADAEMHRVFNCGIGMVLVVAADQADAVAATLREQGEIVNRIGEIVPQQDGMAQTVVV
>NZ_CP021403.1|WP_010929704.1|248562_249264_-|DnaA-regulatory-inactivator-Hda
MNRQLLLDVLPAPAPALNNYIAGPNGQALAAAHALTAGRAIYLWGPAGCGRTHLLRGLSARPEAIYIDAARAAQSLRELAEADSTAPMPRLVAVDDVHRMDDARQAGLFALYNRWRESAATGRAFALAVSGDRAPMSLPLREDLRTRLGWDLVFRLDPLSDADKLAALTAQAAERGLQLAPEVINWMLTHHERDIRKLAALLDALDRYSLATGRPITIPLLRAMLADPHSQAT
>NZ_CP021403.1|WP_010929703.1|247867_248566_-|HAD-IB-family-hydrolase
MTTRRLALFDLDHTLLPLDSDYQWADFLARTGRAGDPAEARRRNDDLMERYNRGELTAEQAAEFMLGLLAAHSPVELAAWHEEFMRDVIRPSLTVQAVDVVRGHLAAGDLCALVTATNSFVTAPIARAFGVQHLIATDPEYRDGRYTGRIEGTPSFREGKVVRVNQWLAGMGLALGDFAESYFYSDSVNDVPLLEAVTRPIAANPSPGLREIAQARGWQVIDLFDHLEDAKS
>NZ_CP021403.1|WP_010929702.1|246511_247867_-|polynucleotide-adenylyltransferase-PcnB
MITETIRKFVGRLFAPALRGPQRIGAERHGIDRRNVSRHAIKVCDVLRQHGYEAYIVGGAVRDLIVGLEPKDFDVATNATPEQIRPLFRRARIIGRRFQLVHVVFGQEIIETSTFRAPASDDQETDEHGRILRDNVFGSQEEDAARRDFTMNALYYDPHTEEVIDYHQGVQDLKKRQVRIIGDPVKRYREDPVRMLRAVRFAAKLNGSIDTATRQPIRTMASLIENVPASRLFDEMLKLLTCGHAMDCLRQLRNDGLHHGLLPLLDVVLEQPGGENFVELALERTDARVRAGKTISPSFLFAALLWQLVDVRWKQLRAQGEHNIPALVQAADSVLDEQTEKLAIQRRFSSDMREIWFMQPRFERRAGKTIYRMLEQPRFRAACDFLQLRAAAGEFDSVLAQWWMDLANGDDATRAEMIEETAHLPRETGDAPAQKRRRPRRRPSNRPREPQ
>NZ_CP021403.1|WP_010929701.1|246023_246515_-|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase
MNGSPASTLAYVGLGASLGDAAATLRSVLAELAAAPGILACKASRLYRTAPVEAQGPDFVNAVAALDTTLAPLDLLDLLQALEQRHGRERPYRNAPRTLDLDLLLYGEQAIDHPRLSVPHPRMHERAFVLAPLCELVPALRLAQGDCAALLAALEDQAIEPLR
>NZ_CP021403.1|WP_003814351.1|245048_246005_+|tripartite-tricarboxylate-transporter-substrate-binding-protein
MKKRIWGTLLAAAMTVGSGAAHAGYPDKAVRIVVPFAAGGGVDALARPFAKELGDILGQSIVVENKPSNTGQIGATDVARAAADGYTLLLSSAAFATTPAFYPQVPYDPVKDFSPVMIMAAAPQVLVASNRFKAASLPDVLAQARQSDRINFALSASTGIQALATAMLAGQGGVTFMTIPYKGAGAAFMDLISGEVDLMIDNPASSLVHVRAGKLRVLATTGSKRMAILPDVPTVAETLPGFEARNWFVLAAPQGTPPAVIQKLNEASARALNTPAMRQMLERDGIDLVADSPAHAAAFLQDEIAKWGKVVKEGNLQP
>NZ_CP021403.1|WP_003814355.1|241535_243638_+|TRAP-transporter-large-permease-subunit
MSSIEMPAPVMPIEPAELAGASPYPLAIDQDFCLIRWMAAISRACGALATVALLLMALSMCYEIFSRYLFNAPTAWATEISGYLLVATVFFGLAAAQASNSHVQVELWIDRLSAPVRLRVELLCQWLALLFCVVLGWQMASFNVREYLNDTRDWGLLSTPQWMPELAVSVGMVVFCMSILVDIYRLSPPAQAWRRWLTPALLALLAAALVALGANAVPMAAGGRFDWGMALIVAALLACAWAWSGVRTLAHVVLVVGGCAVLYGLARGQSLGWVAFLLVASMMLLLFLGVRIGVALGLVGLFGVYFLLSRPQLSLLAERAWSSTNTFTLTAVPMFIFMGGLLLRSGITAGMFDALVRWFGRAPGGLAHASAGASAVFAAVSGSSLATAATLGKVACPDMIERGYSPRLTYGVAAAGATLGILIPPSIPMIIYGTTVGASVTHLFLAGMLPGLLLMACFMLGALVWALAVPGSAPVARAYTLREKLSASRGMVPFVAIIGAVLGSMYTGVATPTEAAAIGAVSAFVLCLVRRQLSWRALFEIAHDSAKVTALLLLIVVGAGIFSWVFDYLRLPREVVNLIQGADLSPALIVAAMVLAYLVLGMFVESIAMMLMTLPVTYPIAMSLGLDPIWFGVFLVLMIELGLITPPVGMVLFVLRSMNEKARFTDIIRGALPFVLIILLFLCLIYIYPQIVMWLPQQVK
>NZ_CP021403.1|WP_003814356.1|240321_241365_-|TRAP-transporter-substrate-binding-protein
MSQRFPLPRGFQAALAAAALCTASWSGAAAAQTYDLTMAVITSPGDGYSILTASVPERVAKATDGKVKVTVSDSLVPPAQIATAVREGRVDMSAALHTYLAADEPRMGIFNLPGLINNIQEYKQVCDAFWCEDTRKIWKDKWNAIVLAEGAWCTQQLFSKDPIHKVEDFKGKRLRVHNPQTAEVVNALGGKPVAMPTTEIFPALERGVIDGLFISTCVGGSLEFWRIAKNVQNWSLGPINGWAILANPDSWQKLPADVQKQVQGAMDALQQEAFGNYDTFVSNAQQEMMKKGVTFWVAPEEERAKLMQQQYIGPSYEAWNKRAKQVGFDGPAYLDRVRTTLGKSASN
>NZ_CP021403.1|WP_003814358.1|239534_240278_-|GntR-family-transcriptional-regulator
MPFPFCNTNRMTSPAAPEGEFKVQRVASVLRHSVTESIRNAILVGRFRPGERLPERELCEMTGVSRTLVREALRQLESEGLIVVIPHRGPVVERLSPEQARGIYQVREELEGLACQLFAEHATEPQLAALQEAFQALKRALTRGTPLEQIAAKNAFYQQLLDGAGNEALTTTLRLLNSRVMLLRSTSMQAPGRAKHSVAELSNLLQALVARDGKAARKAGSLHVRNAASVAIAILQDSLADAAATAE
>NZ_CP021403.1|WP_003814363.1|238102_238513_+|4-carboxymuconolactone-decarboxylase
MALRPEFQTEQFQKGLAVRRAVVGDAYVDKSLNSADDLTASLQKLVTEYCWGEVWTRPGLERKTRSFLNLAMLIALNRPNELRLHLRGAINNGVTKDEIVEVVLQAAIYCGVPAALDAMKAVREVVETMEKEGAFA
>NZ_CP021403.1|WP_003814337.1|250671_251613_-|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA
MTPRAIICLAGPTAAGKSASTLALAQRWPLEIINVDSATIYRGMDIGTAKPSAAERAQVPQHLLDIRDPAQSYSAAEFRADALRLIAEIHARGRIPLLAGGTMLYYKALREGLDDLPQADPALRAELEARAARLGWPALHAELALLDPATAARLSPNDSQRIQRALEICRLAGQPMSALLQGERRGDAPSPYRYVTLSLEPSERAALHARIAQRFDAMLAAGLVEEVRGLHARPDLHPGLPSVRCVGYRQMWSYLDGDIDLDTAREQGVAATRQLAKRQLTWLRAQPERVIIDCLAGDAVARTVDAMARALPD
>NZ_CP021403.1|WP_010929705.1|251609_253499_-|DNA-mismatch-repair-endonuclease-MutL
MSDRRPIATLPDLLISQIAAGEVIERPASVLKEILENAIDAGARAIEVRLEGGGIRRIAVTDDGSGIPPEELPLALTRHATSKIRSLDELESVASMGFRGEALASIASVADLTIISRTRGAEHAWQIDGGSLQVSPASGPPGTTIDVRQLFDRVPARRKFLRSEATEFGHCVDAMERIALAHPEVAFRLFHHDRAQRQWLPADHGQRIRDVLGAEFVGHVLPVLAAAGAIALMGMVTRPTAARARADRQYLYVNGRFVRDRTVSHALRSAYADVLHGDRQPAYVLYLDIDPGAVDVNVHPAKHEVRFRDSGAVHRFVSQVVGQTLAQTGGAEAVPAGVPDGAAPDTAYAGEPAAAAPGLAEPRAPYPAAYPSPGQSPYQGSPARPHTQVPFRLHGEPAGIPATDWQSLYRPLPGDAAPAATALRAAPATPLPTADEHPLGQALAQLHGIYILAQNSRGLVLVDMHAAHERVVYEQLKRALDDRALPRQDLLVPVVFHAAEKDVALVEEHETQLNELGFEMRPSGPASIAVRSVPALLARGDIESLARAVLRDLGAVGVSRLLTEQRNELLSTMACHGSVRANRRLTLEEMNALLRQMEITERADQCNHGRPTWVQWSVNDLDKLFLRGQ
>NZ_CP021403.1|WP_003814332.1|253585_254224_+|membrane-protein
MLDFFNMVLHIDQTLGIWVEQYGVWVYLVLFLIVFAETGLVVLPFLPGDSLLFIAGAFGATGHMDPVLTAALLIVAAISGNTVNYTIGRYIGPRVFSMNLRFLDRNALMRTHAFYEKHGGKTIVMSRFIPVIRTFAPFVAGVADMRLARFQLFNIGGALLWVISLVAAGYFFGNIPLVREHLNTIVLIGLGAAIVPVVIGALVRLLQVRRGQ
>NZ_CP021403.1|WP_019247543.1|254366_255752_-|N-acetylmuramoyl-L-alanine-amidase
MVERDCPPAHGALSPRAAARRRLISVAATLLVLPVVPRLAHAATILAVRTWPADEYTRVTLELDSELKAEHFTLENPHRLVVDIEGLSVNAALNDLVSKVRHDDPYIQGLRVAQNRPNVVRLVFDLKQSVAPQVFTLKPVADYQYRLVLDLYPKVAQDPLMAILNKQSGPDVDDPLARVLDEIARNQPAPDQPAAPLARGQEPAPALPAPPIKPLPAPGRSASRKRMLTIALDPGHGGEDPGAIGRSGLREKDVVLRIARRLKTLIDAQPYMRAYLTRDDDYFVPLHVRVQKARRVRADLFVSIHADAFIKPTANGSSVFALSERGASSTQARWLADKENAADLIGGVNLGSHDRQVAKVLLDLSTTAQINDSLKVGSAFLDEIKKINRLHKNRVEQAGFAVLKAPDIPSILVETAFISNPKEEALLRSAAHQEKLAQAMMTGIDRYFTANPPLARVGDVS
>NZ_CP021403.1|WP_010929706.1|255682_256219_-|bifunctional-alanine-racemase/tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE
MSAPPTTLCLHLPDEAATENLARQLAPLVDGRRGGQPGGQIHLQGDLGAGKTAFTRALLRECGIQGRIKSPSYALLESYKVSNLYFYHLDFYRFSDSREWLDAGFRDLLRDDAVVLIEWPERAAGLLPPPDLLISLAYADQGRDASLTAHTARGQTWLNAIVPPPTARSLPAPPPADA
>NZ_CP021403.1|WP_010929707.1|256370_257762_+|class-II-fumarate-hydratase
MKTRTEKDTFGPIEVPEQHLWGAQTQRSLHFFAISTEKMPVPLVAAMARLKRAAAKVNAELGELDPQVADAIMRAADEVIAGKWPDEFPLSVWQTGSGTQSNMNMNEVLANRASELLGGERGEGRKVHPNDHVNRGQSSNDTFPTAMHVAAAVEVEHRVLPALKALRGTLAAKSAAFYDIVKIGRTHLQDATPLTLGQEISGYVAQLDLAEQQIRATLAGLHQLAIGGTAVGTGLNAHPQFSAKVSAELAHDTGSAFVSAPNKFQALASHEALLFAHGALKTLAAGLMKIANDVRWLASGPRSGLGEISIPENEPGSSIMPGKVNPTQCEAVTMLAAQVMGNDVAINVGGASGNFELNVFKPLVIHNFLQSVRLLADGMVSFDKHCAAGIEPNRERITELVERSLMLVTALNPHIGYDKAAQIAKKAHKENLSLKEAALALGHLTEAQFAEWVVPGDMTNARR
>NZ_CP021403.1|WP_010929708.1|257778_258759_-|AEC-family-transporter
MSENSSLRRDAEAPLLSIFLPGSMSVALLVLPDFMLVALGWALRHKLGFSREFFAGTERMVYFVLFPALLFQSILRTPISAGHAMQLLQATAALMACGVALAWLAGPVLRPAPVALASAAQCGYRFNTYIGLALAASLAGGPGQTIMALIVGFAVPMANVAAVYGLARHSGNGLLRELARNPLLVSTLLSLACNLAGLSLPGPIDTVMARLGAAALALGIMCVGASLAWEGGKGHGRLIGWMLAVKLAAMPSAALGIAWALGLPALETRMLVLFSALPTASAAYVLAMRMGGDGRMVAVLISLGTLASAATIPLWLTAAAGLGAPN
>NZ_CP021403.1|WP_003814324.1|258894_259878_+|tripartite-tricarboxylate-transporter-substrate-binding-protein-BugE
MNKVRTLVQAIAVATGLVAAAGAQAADAYPSKAIRVIVPFAPGGSTDIIARLVTQRMSQELGQPMVVENKGGAGGAIGASEAARAEPDGYTLSIATVSTMAVNPACRPKDLPYDPIKDFQPVTNFANTANVVAVNPKFPAKDFKGFLEELKKNPGKYSYGSSGTCGVLHLMGESFKMATGTDIVHVPYKGSGPAVADAVGGQIELIFDNLPSSMPQIQAGKLRAMAIAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLAPKGTPMDVVNKLRDAAVVALKDPKVIKALDDQGSAPSGNTPEEFAKEIKEQYDWAQDVVKKQNIKLD
>NZ_CP021403.1|WP_010929709.1|259942_260842_-|LysR-family-transcriptional-regulator
MRLRHIEIFEAIRRTGSLTEAAAALHISQPAASKLLAHAEAQLGFKLFERVKGRLVATREAEILAPEVARLNQDLGSVRRLAASLRDRPHGHLRLGCAPALGLGLLPGVVRASRDAQPGITFDIHTHHSAELVQGLLAHELDLAITFDANNHPGLTRTSLGHTELVHLSRLPGAGTTRLQELGGETLIVLDARDASGSLLQMALDAQGLAPRVAIQVQTHYVACALAEAGCGDAVVDAITARAMLRPGMALRRLEPALRVPISVMTRSQDALSTLHHDFIERLRQACSVLQAQPAPQPE
>NZ_CP021403.1|WP_003814321.1|260948_262703_+|gamma-glutamyltransferase
MPLRTLLAALCAAAICQAPAWAREAPGVAREDVNPEIASARSERAQAHAQRYMIATANPLASEAGYRILRAGGSATDAIIAAQLVLNLVEPQSSGIGGGAFMVHYDRGAGELRVYDSRETAPAAARPDRFLREGKPLSYAESVNNGRAVGTPGLLRGLELAHRQHGKLPWQALFEPAIAMAEQGFAVSPRLHESIAGDKALAAQPAAARYFYGPDGQAWPVGHRLRNPEFAATLRSIAREGADAFYRGPIARDIVAAVRAHPTPGDLAEADLAGYRAVVREPVCGLYRGYRLCGAPPPSSGPLAVLQMLGELEQYPLARMRPGSVEAVHYFSEAGRLAFADRDFYVADPAFVDVPVRALLDPAYLRQRGALIRPDRSMKTALPGDPQGLLAERARDDAIEVPSTSHLVAVDAAGNVVSMTSTIEAAFGSKIFVRGFLLNNEMTDFSSSYRDPEGRLVANRVEPGKRPRSSMAPMIVFRAGKPVLALGSPGGSAIINYVAKTLVGVLDWKLDVQQAIALPNLGSRNKETELERGTALEALAPALRRMGHEVRITDFPSGIQGIVIGPHGLAGGADPRREGLALGD

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Crispr_ID: NZ_CP021403_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021403_2

625028-625137

Orphan

Consensus_repeat	Method
GGGGACAGATACCGTCTTGGCCGTCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP021403_2

>merge|NZ_CP021403|2|625028-625137|CRISPRCasFinder
GGGGACAGATACCGTCTTGGCCGTCAAGCGTCGATGGCGTACAGCAGTGTGCCTGTCCCGGCGGGGACAGGCACCCTCCCTGCGGGGACAGATACCGTCTTGGCAGTCAA

>NZ_CP021403|2|2|625028-625137|CRISPRCasFinder
GGGGACAGATACCGTCTTGGCCGTCAA	GCGTCGATGGCGTACAGCAGTGTGCCTGTCCCGGCGGGGACAGGCACCCTCCCTGC
GGGGACAGATACCGTCTTGGCAGTCAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021403.1\|WP_019247959.1\|635491_638470_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375438
NZ_CP021403.1\|WP_094145976.1\|621793_622744_+\|IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP021403.1\|WP_010931070.1\|638823_639774_+\|IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP021403.1\|WP_080501793.1\|638423_638837_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021403.1\|WP_010931357.1\|623815_624496_-\|tellurite-resistance-TerB-family-protein	unknown	unknown	gnl\|CDD\|377342
NZ_CP021403.1\|WP_003818344.1\|633686_634565_-\|fatty-acid-desaturase	unknown	unknown	gnl\|CDD\|366126
NZ_CP021403.1\|WP_003814742.1\|624633_625026_+\|OsmC-family-protein	unknown	unknown	gnl\|CDD\|224679
NZ_CP021403.1\|WP_010931362.1\|612884_613763_-\|septum-site-determining-protein-MinC	unknown	unknown	gnl\|CDD\|178806
NZ_CP021403.1\|WP_003814250.1\|611956_612772_-\|septum-site-determining-protein-MinD	unknown	unknown	gnl\|CDD\|225447
NZ_CP021403.1\|WP_010931358.1\|622812_623811_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270296
NZ_CP021403.1\|WP_003814739.1\|626389_627175_-\|enoyl-ACP-reductase-FabI	unknown	unknown	gnl\|CDD\|180789
NZ_CP021403.1\|WP_010927010.1\|618163_619588_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|236531
NZ_CP021403.1\|WP_010927090.1\|628689_629490_-\|hydroxyacylglutathione-hydrolase	unknown	unknown	gnl\|CDD\|274569
NZ_CP021403.1\|WP_010931356.1\|627269_628679_-\|transglycosylase-SLT-domain-containing-protein	unknown	unknown	gnl\|CDD\|182727
NZ_CP021403.1\|WP_005013747.1\|630787_631738_-\|IS481-like-element-IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP021403.1\|WP_003820957.1\|613874_615638_-\|glutamine--tRNA-ligase/YqeY-domain-fusion-protein	unknown	unknown	gnl\|CDD\|235424
NZ_CP021403.1\|WP_010931355.1\|629510_630281_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|369777
NZ_CP021403.1\|WP_010931361.1\|615753_617094_+\|cytochrome-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|376587
NZ_CP021403.1\|WP_010931354.1\|630323_630791_+\|ribonuclease-HI	unknown	unknown	gnl\|CDD\|178927
NZ_CP021403.1\|WP_003814239.1\|619587_620289_-\|response-regulator	unknown	unknown	gnl\|CDD\|181883

Protein	Function_ID	Function_description	E-value
NZ_CP021403.1\|WP_019247959.1\|635491_638470_-\|hypothetical-protein	gnl\|CDD\|375438	pfam17936, Big_6, Bacterial Ig domain. This domain is found in a wide variety of extracellular bacterial proteins often in multiple tandem copies.	1.32844e-07
NZ_CP021403.1\|WP_094145976.1\|621793_622744_+\|IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	8.66858e-23
NZ_CP021403.1\|WP_010931070.1\|638823_639774_+\|IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	5.27808e-22
NZ_CP021403.1\|WP_010931357.1\|623815_624496_-\|tellurite-resistance-TerB-family-protein	gnl\|CDD\|377342	pfam04391, DUF533, Protein of unknown function (DUF533). Some family members may be secreted or integral membrane proteins.	5.6465e-62
NZ_CP021403.1\|WP_003818344.1\|633686_634565_-\|fatty-acid-desaturase	gnl\|CDD\|366126	pfam00487, FA_desaturase, Fatty acid desaturase.	2.20669e-12
NZ_CP021403.1\|WP_003814742.1\|624633_625026_+\|OsmC-family-protein	gnl\|CDD\|224679	COG1765, COG1765, Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones].	4.86152e-16
NZ_CP021403.1\|WP_010931362.1\|612884_613763_-\|septum-site-determining-protein-MinC	gnl\|CDD\|178806	PRK00030, minC, septum site-determining protein MinC.	3.47756e-166
NZ_CP021403.1\|WP_003814250.1\|611956_612772_-\|septum-site-determining-protein-MinD	gnl\|CDD\|225447	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning].	7.6448e-163
NZ_CP021403.1\|WP_010931358.1\|622812_623811_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	7.76869e-129
NZ_CP021403.1\|WP_003814739.1\|626389_627175_-\|enoyl-ACP-reductase-FabI	gnl\|CDD\|180789	PRK06997, PRK06997, enoyl-[acyl-carrier-protein] reductase FabI.	1.22848e-177
NZ_CP021403.1\|WP_010927010.1\|618163_619588_-\|HAMP-domain-containing-protein	gnl\|CDD\|236531	PRK09467, envZ, osmolarity sensor protein; Provisional.	3.78414e-42
NZ_CP021403.1\|WP_010927090.1\|628689_629490_-\|hydroxyacylglutathione-hydrolase	gnl\|CDD\|274569	TIGR03413, GSH_gloB, hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753). [Cellular processes, Detoxification].	2.85848e-146
NZ_CP021403.1\|WP_010931356.1\|627269_628679_-\|transglycosylase-SLT-domain-containing-protein	gnl\|CDD\|182727	PRK10783, mltD, membrane-bound lytic murein transglycosylase D; Provisional.	5.28635e-76
NZ_CP021403.1\|WP_005013747.1\|630787_631738_-\|IS481-like-element-IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	9.05216e-23
NZ_CP021403.1\|WP_003820957.1\|613874_615638_-\|glutamine--tRNA-ligase/YqeY-domain-fusion-protein	gnl\|CDD\|235424	PRK05347, PRK05347, glutaminyl-tRNA synthetase; Provisional.	0
NZ_CP021403.1\|WP_010931355.1\|629510_630281_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	9.0439e-10
NZ_CP021403.1\|WP_010931361.1\|615753_617094_+\|cytochrome-ubiquinol-oxidase-subunit-I	gnl\|CDD\|376587	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I. This family are the alternative oxidases found in many bacteria which oxidize ubiquinol and reduce oxygen as part of the electron transport chain. This family is the subunit I of the oxidase E. coli has two copies of the oxidase, bo and bd', both of which are represented here In some nitrogen fixing bacteria, e.g. Klebsiella pneumoniae this oxidase is responsible for removing oxygen in microaerobic conditions, making the oxidase required for nitrogen fixation. This subunit binds a single b-haem, through ligands at His186 and Met393 (using SW:P11026 numbering). In addition His19 is a ligand for the haem b found in subunit II.	2.21087e-123
NZ_CP021403.1\|WP_010931354.1\|630323_630791_+\|ribonuclease-HI	gnl\|CDD\|178927	PRK00203, rnhA, ribonuclease H; Reviewed.	4.07937e-102
NZ_CP021403.1\|WP_003814239.1\|619587_620289_-\|response-regulator	gnl\|CDD\|181883	PRK09468, ompR, osmolarity response regulator; Provisional.	4.05363e-90

>NZ_CP021403.1|WP_003814742.1|624633_625026_+|OsmC-family-protein
MTIQVRANTPGGLQYTATAEGHELPLAMPQPQGEGPDPHDYFDTALGGCKALTLMVYAQRKGLPLQAVDVDVVRDASEERKGIYRLTAKLKLHGDLDDAQIDELLKVADKCPLHKLMTATDIQVSTIVVE
>NZ_CP021403.1|WP_010931357.1|623815_624496_-|tellurite-resistance-TerB-family-protein
MSARQLLDQLLQSGQSLMQGAGAQAQQATQGGKGTFLAGLGGGALGAGALGLLLGSKKARKIGGKVAMYGGMAALGALAYRAYDQYQRNQAGGAAAPAPQTLDRLPPAPAEQHSNAVLVAMIGAAKADGHIGPDERQLLETELAKLSGDAGDRAWLEAELARPLDPAVIAQQARTPEMGAEMYLASLLVADEQSFMERAYLDELARQLKLPAELKQQLEAQVPAAA
>NZ_CP021403.1|WP_010931358.1|622812_623811_+|tripartite-tricarboxylate-transporter-substrate-binding-protein
MRPVAPMTTMKSQVSILLAGCLLGAGAAAAQAPATYPDHAITIVVTFPPGGGTDLLARKLGAAMQQRLGQPVVVENRPGASGNIGARAVAEARPDGYTLLMVNSSFAVNPGVFRNLDFSPTRDFTAVINVAYVPSVIVTAEPAGDAGLPERLRQADTQSRTLAFASCGNGTPQHLAGEMLRQASGAWLQHVPYRGCGPALTDVLSRQVPLGIVTASSAAPFIHAGKLRALAVTSAQRSPLLPDVPTVAEQGAPGYELDQWHGLLAPAGTPPAVIQRLYEALSAIVAEPAMRRELESLGFNPVSEGPERFEALVQADIARFAALTARMGLRAD
>NZ_CP021403.1|WP_094145976.1|621793_622744_+|IS481-family-transposase
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAHALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWQRPHQGIGRAVPISRLNLDEYNLLTVHS
>NZ_CP021403.1|WP_003814239.1|619587_620289_-|response-regulator
MDNPHTKLLVVDDDPALRQLLADYLNRHGYDTLLAPDASDLAARITRYAPDLLVLDRMLPGGDGADACRRLRDQGEDIPVILLTARDEAVDRIIGLEAGADDYLGKPFDPRELLARIEAVLRRKRGPSALTKDAPVSFGPFVFDPATRQLLRDDTPVKLTGGEINLLEALVRNAGKPLSRERLLALARDDDGGERNDRAIDIAILRLRRAIEEDPKQPRWIQTVWGIGYRFSP
>NZ_CP021403.1|WP_010927010.1|618163_619588_-|HAMP-domain-containing-protein
MKLLRLPAPRSLRMRLILLVLGSVLLAQAATLATVSYFRHKFMEDVAIDYIATTIRTLRASLSQVPTDERAEFVRQASGNQWRLWSRSLPADARLQRWHRGPQEDEAERERMRREYERRHPPPDDIRRDLRGLVSELNERLSDGTRVALSRGPRPEIFISLAPSPSPDDAPPLREWLVIPLERLDPPVATPLIAFWVGGIGLVLLLAAWFSWHITRPLTRLADAADQLAAGQPQRVEPSGPHETRVLGERFNAMLDALAESDSVRRTLLSGLPHDLKGPLSRMWLRIEMADDPTLKEGLRKDLQDMQHMVDQFIGFVRGTDPAAYRYAPLALGEWLAERVGAWQGAGTDIRLQAPDNGALGIQADAVALGRLLDNLIGNALHHGAPPVEVSLRRDADMAVLEVSDHGPGIAPERRTEALRPFARLDDARTRTGNVGLGLALAEAIARAHGGGLELRQAPSGGLLVRITLPLAKA
>NZ_CP021403.1|WP_010931361.1|615753_617094_+|cytochrome-ubiquinol-oxidase-subunit-I
MNIPPLLLARAQFTASLGFLALFLAISLALAWLLLFFKLRARWSGQSGWTAAYRFWVRIFALAFVLALACAVPVLIQLGSLWSGLMDKIGNLAGPLLGYGVLSIFIVKSCFLGVMLFGQRRVSDAAHTLAVLMVAIGQLVAVGWVLALFSWLQTPDGAVLIDGRYQVYDWRAVVLNPSFGWRLGLTVLGAFLTAGFLMLGVTAMQALRRPLDDGERHAFRAGLTVALLASLLLGPVAAGMGEVTARLQPAKAAAAAGFWHSGAEPELVVFGWPSARAQANLAAVSLAGAGGRWLHRDASLGYLGLDKFSGMQPPVAFTFWSLRLALGLGLLMLAASCATLALTCRRGFDPVALPRWWLRVLSLLMFAGALGVVATWCYDLAGMQPYAVNRAVTQSEVLGPVTTPALLYSLAGHIALYAVLLAAFVGMLFHAARYGVVPVRKTGGSS
>NZ_CP021403.1|WP_003820957.1|613874_615638_-|glutamine--tRNA-ligase/YqeY-domain-fusion-protein
MTHAPTPPAASNFLRPIIEDDLQANRFQGKLWAGKPGPAALQAQGQPDPARIRTRFPPEPNGYLHIGHAKSICVNFGLARDYGGVCHLRFDDTNPEKEEQEYVDAIIEAVHWLGFDWQADGNDNLYFASDYFEFMYEFAEALVQAGHAYVDEQSAEEIRASRGTLTEPGTDSPWRDRPADESLLRLREMRDGKHPDGSLVLRARIDMASPNINLRDPVMYRVRHATHHRTGNAWCIYPMYSWAHPVEDALEGITHSICTLEFEDQRPFYDWILARLAELGKLARPLPHQYEFARLNLTYVVTSKRKLLQLVREGYVDGWDDPRMPTLFGLRRRGYTPSSIRLFCDRTAVSKSDSRIDYSLLEQAVRDDLDPVAPRSVAVLDPLKLVITNYPEGRSETCSAPRNPHDPQAGVREFPFTRELWIEQDDFREEPPKKYFRLFPGNTVRLKYGYVVRCTGFTKDESGKVVEVQAEYLPDTKSGTPGADSVKVKGNITWVSAAHAVPAQVHLYDRLFADAHPDGGDKDFLACLNPNSKQTVQAWLEPGIEAVPGATWQFERLGYFTVDSKDSRPEAPVLNRIVTLRDSWQAA
>NZ_CP021403.1|WP_010931362.1|612884_613763_-|septum-site-determining-protein-MinC
MNTESLALDFKSATLYAIRVVLHDADTTRLRAALDKRMADAGSFFENEPVVIDATRVDAPVDWPALLQALADHNLPPIGVVAEGANLQGARDAGLVPVELSTSVARAPQVIDTAPPNDVATPVPSVPEATAEATAKAGPQDDEADGEQADEAPAHNPESVPTRAARETTEANRPTATPPQSSSALVITKPLRSGQRVYARHTDLIVIGMVSQGAEVIADGNVHVYGPLRGKAMAGARGDTSARIFTTQLDAELLAVAGVYRVVEDKLDRALHNQPALVRLDGDTLRIEALKG
>NZ_CP021403.1|WP_003814250.1|611956_612772_-|septum-site-determining-protein-MinD
MTRIVVVTSGKGGVGKTTTSASFSAGLAMRGHKTAVIDFDVGLRNLDLIMGCERRVVYDFVNVIQGEASLKQALIKDKQLENLFILPASQTRDKDALTQEGVEKVIDELKEMGFDYIVCDSPAGIEAGALMAAYFADDALVVTNPEVSSVRDSDRILGILAAKSRRAVQGDEPVKEYLLLTRYNPKRVNDGEMLSLSDIEDILRIKLIGVIPESEAVLQASNQGLPAIHLKDTDVSEAYKDVVARFLGEERSLRFTDYEKPGLLKRLFGGK
>NZ_CP021403.1|WP_003814739.1|626389_627175_-|enoyl-ACP-reductase-FabI
MGFLAGKRILMTGVLSNRSIAYGIARACRDQGADLAFTYVGDRFKERITEFAASFGSDIVLPCDVAEDSQIDAAFAELGKRWDGLDGLVHAIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPAMAKAALPLMEGRKGSVLTLSYLGSERVVANYNTMGLAKASLEASVRYLATALGPRGIRANAISAGPIKTLAASGIKDFSSILKFVEANAPLRRNVTIEDVGNVAAFMLSDLAAGITGEITHVDAGFSTVVPGMEN
>NZ_CP021403.1|WP_010931356.1|627269_628679_-|transglycosylase-SLT-domain-containing-protein
MRFLRLLLPLFLAVLAGCAGTAKQNQAAGPSSNRYIAQDTSRTVDLTSPPSDAWDRIRRGFAIPNLNTDLAQEWTDYYASHPESVQRMAERAGKYLYFIVDEINRRGLPTELALLPFVESAYNPTALSRSQASGLWQFIPTTGQHFNLKQDWWRDERRDPIASTYAALDYLEKLFEMQGDWYLALASYNWGEGSVQRAMAKNEAAGLSTDYLSLNMPDETRNYVPKLQAIKNIIANPRKFAVVLPPVENTPYFVAVQKNRDIDIELAARLAEMPLDEFKALNPAFNRPLIRGEHAPTLLLPADRADRFNANLQNYKGDLSSWKVYHTRRGESYAAIAKRFGISEAKLRASNDIGSKRKVAADQALLIPGVPSGDGAANIQLASLSPPVGALDNVGEPRAAAAPRGKAPARVASARPNVRTHKVSSGDTLFGLARKYGTSVGALRALNNLKGNNLKLGSQLRIPGTGTRG
>NZ_CP021403.1|WP_010927090.1|628689_629490_-|hydroxyacylglutathione-hydrolase
MQTAPPLSAVVPLPAFSDNYIWALAHEGQAAVVDPGDAAPVLRWLRATGATLRAILLTHHHPDHVGGVLELVQATGATVYGPAGETLPHCDVRLAEGDRVTLPELALALEVLDVPGHTAGHIAYTGRAAGVERVLFCGDTLFAGGCGRLFEGTPAQMLDSLEKLSALPADTQVCCAHEYTLANLRWALAVEPANRTLQQWYQRAQELRNEGTPTLPSTIGQERETNPFLRTPHAAVAHAAAVWSGRSLATPVEVFAALRQWKNNFK
>NZ_CP021403.1|WP_010931355.1|629510_630281_+|methyltransferase-domain-containing-protein
MAEETPPIVELAEWFQTPPGQYVLAWEQAQFDEAVADIFGYYAWQVGLAEPNLLRANRMPFKAWVGAGVPPPELAQGWQACVAAAPEALPFESQSVDLLVLPHAFECAEAPHLVLREVERVLVPEGRVVISGFNPWSLWGARNLMPGMEAWLPLPLSAQVALPRLKDWFKLLSFEVERGRFGCYAPACRTDKWLRRWRFMERYGQRWWGLGGAVYVVTATKKVAAMRLIGPAWKTRRKRAQAASVVVNRQADDPGR
>NZ_CP021403.1|WP_010931354.1|630323_630791_+|ribonuclease-HI
MQNLEGSGDGQQVEMWTDGACKGNPGPGGWGVLMRAGQHEKTMHGGERQTTNNRMELMAVIEGLRALKRPCRVTIHTDSQYVMKGMTEWLANWKRRGWRTADKKPVKNVELWQALDEQVGRHQVQWRWVRGHAGDPGNERADALANQGMEAARGR
>NZ_CP021403.1|WP_005013747.1|630787_631738_-|IS481-like-element-IS481-family-transposase
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>NZ_CP021403.1|WP_003818344.1|633686_634565_-|fatty-acid-desaturase
MVRPAEWLRHRRDWQSVLYLAALPALAAWQWVHGWHWALYAPMLFLTLGVGVIHHNHAHRRMWRPRWLNRLTDFWLTLLQGHPTFVFHAAHNANHHRYKHGPRDVARTYRFGGDTNHLAGYLLHPLQAVVVLYPLFLASLRRLRSRRPGVWRYCLRQYAAWLGLWGGLLALDPGKAFWLVIVPQLHGLHWLLATNYLQHAHADGGPGRHAALSYARNFEGWVNPLLFNIGLHTAHHENPRAHWSELRALHWQHYRDRVPSRLNERGLAPYMARVFVLGLFSRRCRTHTLMRP
>NZ_CP021403.1|WP_019247959.1|635491_638470_-|hypothetical-protein
MQLWLPDGTATSVRANAAGGFEASSAGDMTSGLIRARATDRYGDTSQEVTYAYTDTVDKTAPVLSIAGVATDEATGRVTVTGRSEPDAQVTIRFPGGGRKTVRADANGAYRVRSDGDLPAGVIVVQAADAAGNSTQAQQAYQDTVDRTAPEPVQIALDTDAATGRLTVSGQAEPGGSVTVTWPDGTTQTVRVDADGGFRVTSAGDAAQGDVVVVVADQAGNRAAPVRAHYADPVDRTAPMTPTVRHATDAQTGRVTVMGRTEAGALVTVQFPDGSSKTVRAQNDGGYAATSDTDMVSGPIVVSAGDADGNRTPAQQVMYTDTLDKTAPASPSLTVREDAASGRATVTGQAEPGAAVRVVFPNGEAQTVTAGSDGAYSVTSTADMVAGEITVVAADASGNQSAPARTVFADAVDKTAPAAPTLALSEAADSGRLTVSGRTEPGASVRVTFPDGETVTVTAKADGTYTATSRADMIGGNVTVVATDTAGNAAAPVRAAYADTVDRTPPVLDTPVLNVASDSGRVTVTGVTEPGARVQVAIPGESLQTVTADSAGRYRAVSPGDVLQSGTVRVIATDAHGNASAPRDVPYQDAVDRTAPPLTIEAAVEQARTGVVNVSGKTEPNLMVSATFPDGQTAQARADGQGRYQLASPADVARSGRIAVSASDAAGNRAAARAEFTDQVDKTAPAVTIRAVTEQAGTGVATVSGATEPGATVSVTFPDGQVARATADRSGAYTVHSARDVTARGNISVIATDAAGNASPSVSRQFSNTVADTVPPSLTIAMVTTDPGNGRITVSGVTEAGARVHVVFPGGASDTVTADSKGGYRATSAGDVGSGAVTAQATDASANRSPLKTYAYTDAWQPRQLSAKDFSQSRYFVPLTTRGGTDNEPLLRITTNQQIPTAELRVALKPYKTEDRAGRLVREAITLKWGNAPGVGGDARALHFYVPDSAKAKLRKELTEVERSNDYKFWIEFTDTRFGGVARLYIKVISTL
>NZ_CP021403.1|WP_080501793.1|638423_638837_+|hypothetical-protein
MARTLVAVPSGSQSCMHVGQGLGDAVHGNAPGGRVGANLGNAQRQDDFLAPRIEHDAVLAPDEILQACAPVEWRGRVLRAAAQLPRQGLAQIQPHAQLDASCEDSIGCMHGSSEPDLRNWKSPPPQFTQGARPDEHP
>NZ_CP021403.1|WP_010931070.1|638823_639774_+|IS481-family-transposase
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT

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Crispr_ID: NZ_CP021403_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021403_3

2123872-2123998

Orphan

Consensus_repeat	Method
AAAAAGCCCCCTCGGGGGGCAGCAAGCCCGCATAGCGGGCGCAGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP021403_3

>merge|NZ_CP021403|3|2123872-2123998|CRISPRCasFinder
AAAAAGCCCCCTCGGGGGGCAGCAAGCCCGCATAGCGGGCGCAGCGTGGGGCACTACTTTGCCGCTGGGCCGCCCCAAGGCAAAAAGCCCCCTCGGGGGGCAGCAAGCCCGCGTAGCGGGCGCAGCG

>NZ_CP021403|3|3|2123872-2123998|CRISPRCasFinder
AAAAAGCCCCCTCGGGGGGCAGCAAGCCCGCATAGCGGGCGCAGCG	TGGGGCACTACTTTGCCGCTGGGCCGCCCCAAGGC
AAAAAGCCCCCTCGGGGGGCAGCAAGCCCGCGTAGCGGGCGCAGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021403.1\|WP_003812463.1\|2129075_2129588_+\|Fe-S-cluster-assembly-transcriptional-regulator-IscR	unknown	unknown	gnl\|CDD\|273927
NZ_CP021403.1\|WP_003812460.1\|2130854_2131265_+\|Fe-S-cluster-assembly-scaffold-IscU	unknown	unknown	gnl\|CDD\|183087
NZ_CP021403.1\|WP_005012067.1\|2121515_2122466_+\|IS481-like-element-IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP021403.1\|WP_010930564.1\|2115657_2116434_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235546
NZ_CP021403.1\|WP_010930569.1\|2128369_2128861_+\|low-molecular-weight-phosphotyrosine-protein-phosphatase	unknown	unknown	gnl\|CDD\|319971
NZ_CP021403.1\|WP_003812456.1\|2131592_2132105_+\|Fe-S-protein-assembly-co-chaperone-HscB	unknown	unknown	gnl\|CDD\|235133
NZ_CP021403.1\|WP_019247935.1\|2119983_2120715_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|270296
NZ_CP021403.1\|WP_019247934.1\|2120732_2120945_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|270296
NZ_CP021403.1\|WP_010930568.1\|2126080_2128117_+\|excinuclease-ABC-subunit-UvrB	unknown	unknown	gnl\|CDD\|235395
NZ_CP021403.1\|WP_023853213.1\|2118598_2119315_+\|3-oxoacid-CoA-transferase-subunit-A	unknown	unknown	gnl\|CDD\|131482
NZ_CP021403.1\|WP_015063637.1\|2113250_2114054_+\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|223955
NZ_CP021403.1\|WP_010930571.1\|2132234_2134097_+\|Fe-S-protein-assembly-chaperone-HscA	unknown	unknown	gnl\|CDD\|235360
NZ_CP021403.1\|WP_003812478.1\|2119307_2119949_+\|CoA-transferase-subunit-B	unknown	unknown	gnl\|CDD\|188219
NZ_CP021403.1\|WP_019247244.1\|2124800_2126003_-\|aspartate/tyrosine/aromatic-aminotransferase	unknown	unknown	gnl\|CDD\|181731
NZ_CP021403.1\|WP_003812472.1\|2124021_2124750_-\|transcriptional-repressor-LexA	unknown	unknown	gnl\|CDD\|234688
NZ_CP021403.1\|WP_010930570.1\|2129605_2130817_+\|IscS-subfamily-cysteine-desulfurase	unknown	unknown	gnl\|CDD\|184450
NZ_CP021403.1\|WP_003812491.1\|2114050_2114482_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224462
NZ_CP021403.1\|WP_029443773.1\|2112781_2113237_+\|MaoC-family-dehydratase	unknown	unknown	gnl\|CDD\|239534
NZ_CP021403.1\|WP_010930563.1\|2114478_2115636_+\|thiolase	unknown	unknown	gnl\|CDD\|180434
NZ_CP021403.1\|WP_003812458.1\|2131266_2131590_+\|iron-sulfur-cluster-assembly-protein-IscA	unknown	unknown	gnl\|CDD\|213674

Protein	Function_ID	Function_description	E-value
NZ_CP021403.1\|WP_003812463.1\|2129075_2129588_+\|Fe-S-cluster-assembly-transcriptional-regulator-IscR	gnl\|CDD\|273927	TIGR02010, Putative_HTH-type_transcriptional_regulator, iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Regulatory functions, DNA interactions].	1.00126e-77
NZ_CP021403.1\|WP_003812460.1\|2130854_2131265_+\|Fe-S-cluster-assembly-scaffold-IscU	gnl\|CDD\|183087	PRK11325, PRK11325, scaffold protein; Provisional.	5.84746e-99
NZ_CP021403.1\|WP_005012067.1\|2121515_2122466_+\|IS481-like-element-IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	8.66858e-23
NZ_CP021403.1\|WP_010930564.1\|2115657_2116434_+\|SDR-family-oxidoreductase	gnl\|CDD\|235546	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG.	4.84544e-78
NZ_CP021403.1\|WP_010930569.1\|2128369_2128861_+\|low-molecular-weight-phosphotyrosine-protein-phosphatase	gnl\|CDD\|319971	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase. Low molecular weight protein tyrosine phosphatases (LMW-PTP) are a family of small soluble single-domain enzymes that are characterized by a highly conserved active site motif (V/I)CXGNXCRS and share no sequence similarity with other types of protein tyrosine phosphatases (PTPs). LMW-PTPs play important roles in many biological processes and are widely distributed in prokaryotes and eukaryotes.	1.04407e-74
NZ_CP021403.1\|WP_003812456.1\|2131592_2132105_+\|Fe-S-protein-assembly-co-chaperone-HscB	gnl\|CDD\|235133	PRK03578, hscB, Fe-S protein assembly co-chaperone HscB.	2.55481e-79
NZ_CP021403.1\|WP_019247935.1\|2119983_2120715_+\|hypothetical-protein	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	8.17828e-106
NZ_CP021403.1\|WP_019247934.1\|2120732_2120945_+\|hypothetical-protein	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	1.69368e-19
NZ_CP021403.1\|WP_010930568.1\|2126080_2128117_+\|excinuclease-ABC-subunit-UvrB	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_CP021403.1\|WP_023853213.1\|2118598_2119315_+\|3-oxoacid-CoA-transferase-subunit-A	gnl\|CDD\|131482	TIGR02429, 3-oxoadipate_CoA-transferase_subunit_A, 3-oxoacid CoA-transferase, A subunit. Various members of this family are characterized as the A subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by pfam01144. The B subunit represents a different clade in pfam01144, described by TIGR02428. The two are found in general as tandem genes and occasionally as a fusion.	2.11885e-141
NZ_CP021403.1\|WP_015063637.1\|2113250_2114054_+\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|223955	COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism].	1.56988e-63
NZ_CP021403.1\|WP_010930571.1\|2132234_2134097_+\|Fe-S-protein-assembly-chaperone-HscA	gnl\|CDD\|235360	PRK05183, hscA, chaperone protein HscA; Provisional.	0
NZ_CP021403.1\|WP_003812478.1\|2119307_2119949_+\|CoA-transferase-subunit-B	gnl\|CDD\|188219	TIGR02428, 3-oxoadipate_CoA-transferase_subunit_B, 3-oxoacid CoA-transferase, B subunit. Various members of this family are characterized as the B subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by pfam01144. The A subunit represents a different clade in pfam01144.	3.32577e-117
NZ_CP021403.1\|WP_019247244.1\|2124800_2126003_-\|aspartate/tyrosine/aromatic-aminotransferase	gnl\|CDD\|181731	PRK09257, PRK09257, aromatic amino acid transaminase.	0
NZ_CP021403.1\|WP_003812472.1\|2124021_2124750_-\|transcriptional-repressor-LexA	gnl\|CDD\|234688	PRK00215, PRK00215, transcriptional repressor LexA.	1.30999e-106
NZ_CP021403.1\|WP_010930570.1\|2129605_2130817_+\|IscS-subfamily-cysteine-desulfurase	gnl\|CDD\|184450	PRK14012, PRK14012, IscS subfamily cysteine desulfurase.	0
NZ_CP021403.1\|WP_003812491.1\|2114050_2114482_+\|hypothetical-protein	gnl\|CDD\|224462	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only].	1.42164e-21
NZ_CP021403.1\|WP_029443773.1\|2112781_2113237_+\|MaoC-family-dehydratase	gnl\|CDD\|239534	cd03450, NodN, NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.	1.89129e-75
NZ_CP021403.1\|WP_010930563.1\|2114478_2115636_+\|thiolase	gnl\|CDD\|180434	PRK06158, PRK06158, thiolase; Provisional.	0
NZ_CP021403.1\|WP_003812458.1\|2131266_2131590_+\|iron-sulfur-cluster-assembly-protein-IscA	gnl\|CDD\|213674	TIGR02011, Protein_yfhF., iron-sulfur cluster assembly protein IscA. This model represents the IscA component of the ISC system for iron-sulfur cluster assembly. The ISC system consists of IscRASU, HscAB and an Isc-specific ferredoxin. IscA previously was believed to act as a scaffold and now is seen as an iron donor protein. This clade is limited to the proteobacteria. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	4.04388e-54

>NZ_CP021403.1|WP_005012067.1|2121515_2122466_+|IS481-like-element-IS481-family-transposase
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>NZ_CP021403.1|WP_019247934.1|2120732_2120945_+|hypothetical-protein
MGPAGIPADITAAWAKEIARVAALPDVSEKLATLGVESVSSTPQQFSAFVESEIRKWEKVVQDAHIPPVQ
>NZ_CP021403.1|WP_019247935.1|2119983_2120715_+|hypothetical-protein
MKTKIKIVTLALCAFSSAVFASSFPSKPINLIVPYPPGGAVDPIALLYAEKISQSWGVPVIVLNRPGAGTTIGLNQAARAEPDGYTVVLGTASITSNAPLYRSLPYDTLKDFTYLSMAGMIPLAITANPRTAVNSMDELVGQLKKKPGSLTYSSSGNGTIIHLGGELFKSLAGVDMVHVPYKGSGPSVMAGVAGEVDLTFDSVFLMDPQVKAGKLKYIAVASEKRLKSLPEVPAIGESILVIS
>NZ_CP021403.1|WP_003812478.1|2119307_2119949_+|CoA-transferase-subunit-B
MSKGWSNDEIAARIAVDLPEHAIVNLGIGLPILVANHIPEGKTIFFHSENGIIGLGPVPAPGQEDPDIVNAAKKHATLIAGASIVHHADSFSLIRGGRLDYSVLGGLQVSSGGDIANWKVPGQKGGGGVGGAMDLAVGARNVLVMMRHQDKTGASKLVKSCTFPLTAVSAVTRVYTELGIFECAGDAFIVRESAPGIGKDELLRKTEAALTFP
>NZ_CP021403.1|WP_023853213.1|2118598_2119315_+|3-oxoacid-CoA-transferase-subunit-A
MTAGTSTHFNQVNGVGMLNKTCESADEAVSVVESGATILISGFGDIGLPFELLHALARTSVKDLTIVSNNAGTGELGLSRLFRNRQVSRLIASFPSQPDSHHYFAAYQEGLVDLELVPQGTLAERIRAAGAGLAGFFTPTGYGTELAQGKECRMFKGKGYVFEEALPGDFAFIKAHVADAYGNFRYRRASRTFNPIMAMAARTTIAEAKQMVPVGSIDPDDVHTPGVFVDRIVEVRDE
>NZ_CP021403.1|WP_010930564.1|2115657_2116434_+|SDR-family-oxidoreductase
MQDKLLTLENRQVIVTGAGQGIGRALASAIAGLGGRVVAVDLNADALAALREALGHERCVTVAGNVADPSLAQQAVDAGVTAFGGVNGLVNNAGVTRTAMIDKMSISDWQQVIDVHLSGSFYFLQALGRHLLGRAKAGGDGAGAIVNISSDAGRRGTIGQINYGAAKAGVLGLTMCAAREWARYGIRTNTVGFGVVETPMTETIRGEKFRDTYLSQIPLGRWGEADEVVRPVCFLLSDADSYVTGQHLSVNGGYTIGL
>NZ_CP021403.1|WP_010930563.1|2114478_2115636_+|thiolase
MIQERFPRGKTAIVACATYGIGESPGLSSLDLAVRASVQALDSVGLTPADVDGLFIGLPDDFVSGLSFTEYLGISPRLTDNNRTGGSSFLTHAIHAALALEAGLCDVALIAYGSNQRSGAGKLVSSMRPSPYEGAYKLARPVGAYALAASRYAAQYGLQKEQLGAVALAARQWAQKNPEAYMRAPLTMDECLASRLVCDPFSVRDCCLVTDGAAAVVMVRADRARDLAARPAYLLGGAAAAWHKDITNMPDLTVTAASLSGPRAMAQAGVTPADIDVLELYDAFTLNTILFLEDLGFCAKGEGGAFVEDGRIAPGGALPVNTNGGGLSCVHPGMYGLFTMVEAAQQLAGAAGERQVAQARLALAHGNGGELSSQATLILGTEETI
>NZ_CP021403.1|WP_003812491.1|2114050_2114482_+|hypothetical-protein
MTEHPQAASALLPQQEYFAHLADGRFMIQRSRSSGEYVFYPRVAAPRTGAQDLEWVAASGRGTVYATTVMRVRPPAAPYNVCLVELEEGPRMMSRVEGIGPEDVQVGMAVRARIIRDDAGEPLVVFEPAGPSDAGIGQGRAAQ
>NZ_CP021403.1|WP_015063637.1|2113250_2114054_+|enoyl-CoA-hydratase/isomerase-family-protein
MIMSVLEISRVGACAVLTLNRPAARNALDMDLRNALAKALPEIRDDATVRAVVLTGAGGHFCAGGDIRAIAAGQGNADVFEGRNRILSMQRWFDGLVDLEKPVIAAVDGVAFGAGLSLALAADFVLASPRATFCAVFARLGYVPDLGGMYLLPRAVGLARAKALAFSARVVGAPEALEMGIAHQLVDDRPVLDAALELAGRFEQAPAGALGIVKSVMNHAFESDRRTVYMQEALAQALCRESAFHQEAARRFLDKQAPLYQWPQEQQ
>NZ_CP021403.1|WP_029443773.1|2112781_2113237_+|MaoC-family-dehydratase
MSFDSIAALKAFAGQPAAVGQPIVVDQSAIDTFGDVVHDRQWIHVDPVRAAAESPFGTTIAHGLLTLSLITGWYHQLFEFPGRKLALNYGFDKVRFPAPVPSGSALVGSFRLARVDELGPDEARCLWEVDVRVAGAERPAMVAEWLMQLRY
>NZ_CP021403.1|WP_003812472.1|2124021_2124750_-|transcriptional-repressor-LexA
MRLAFFPWVLQNGAVYPYSPQKRVIAMATKLTERQQEILDLIRQTVARTGFPPTRAEIAQALGFRSPNAAEDHLKALARKGAIELTAGASRGIRLKVPDSATPSAQLTHPLLAQLVLPLVGRVAAGSPILASEHVEREVGVDPGLFAQTPDYLLKVRGMSMRDAGILEGDLLAVKRAAEARNGQIVVARLGDEVTVKRLQRQNGRIELLPENPDFAPIVVANTDEFALEGIAVGLIRTQPLH
>NZ_CP021403.1|WP_019247244.1|2124800_2126003_-|aspartate/tyrosine/aromatic-aminotransferase
MSTLFASVELAPRDPILGLNEQYNADTRPGKVNLGVGVYYDDEGRIPLLQAVRKAEVARIEAAAARGYLPIEGIAGYNKGAQALLLGADSPLAAEGRVLTAQALGGTGALKIGADFLRQLLPQSKVLISDPSWENHRALFERAGFPVETYAYYDAATHGLNFEAMLAALQAAPEQTIVVLHACCHNPTGVDPTPQQWEQIAAVVKARNLVPFLDIAYQGFGEGLEQDAAVVRMFAELDLTMFISSSFSKSFSLYGERVGALTVVAGSKDEAARVLSQLKRVIRTNYSNPPTHGGTVVSTVLNTPELFALWENELAGMRDRIRLMRKELVEKIKTQGVAQDFSFVLAQRGMFSYSGLTAAQVDRLREEHGIYAVSSGRICVAALNSRNIDAVAAGIAAVLK
>NZ_CP021403.1|WP_010930568.1|2126080_2128117_+|excinuclease-ABC-subunit-UvrB
MTAPGFVEFPDSPFHLYQPYPPAGDQPGAIDALTEGVSDGLMFQTLLGVTGSGKTYTMANMIARLGRPALVLAPNKTLAAQLYAEMREFFPRNAVEYFVSYYDYYQPEAYVPTRDLFIEKDSSINEHIEQMRLSATKSLLERRDTVIVGTVSCIYGIGNPGDYHAMVLILRTGDRISRREVLARLVAMQYTRNDADFTRGVFRVRCETIDIFPAESPELALRLTLFDDEIESLELFDPLTGRVRQKLPRFTVYPGSHYVTPRETVLRAIETIKEELRERLAQLIADGKLVEAQRLEQRTRFDLEMLQELGFCKGIENYSRHLSGAAPGEPPPTLIDYLPADALMFIDESHVTIGQLGGMYRGDRSRKETLVQYGFRLPSALDNRPLRLEEFEARMRQCVFVSATPAAYEQEHADNVVEQVVRPTGLVDPIVEVRPAHTQVDDLLGEIHKRAALQERVLVTTLTKRMAEDLTDFLSEHGVRVRYLHSDIDTVERVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGRAILYADRITDSMRRAIDETERRRAKQIQHNTDHGITARGVSKAVRELIDGVVAPAGHDALESAVPAEVLTDEKAMAREIRRLEKLMMDHARNLEFEQAAAARDALNALKSRLLLDGVGWSG
>NZ_CP021403.1|WP_010930569.1|2128369_2128861_+|low-molecular-weight-phosphotyrosine-protein-phosphatase
MMTKVLFVCMGNICRSPSAEGVFRYLVNDAGMGDVVRVDSAGTHAFHIGEAPDARAQAAARKRGYDLTHCAARQVTADDFREFDLILAMDWDNLAALQQQCPKAYQHKLMLLMRFANEFEEATVPDPYYGGPEGFGKVLDYLEDACQGVLELVRKRATQYQAA
>NZ_CP021403.1|WP_003812463.1|2129075_2129588_+|Fe-S-cluster-assembly-transcriptional-regulator-IscR
MRLTTKGRFAVTAMIDLAMRQHSGPVTLAAISQRQNISLSYLEQLFGKLRRHELVDSVRGPGGGYSLARLARNVTVADIIFAVDEPLDATSCGGKRDCTSGNDGKPGKCMTHELWTTLNRKMVDYLDSVSLQDLVDQQRVRQLQEAANQAQGCSAVRVNRSTPVAANATA
>NZ_CP021403.1|WP_010930570.1|2129605_2130817_+|IscS-subfamily-cysteine-desulfurase
MSNRPIYLDYSATTPVDPSVVEKMIPWLYESFGNPASRSHAFGWEAEDAVEKAREEVAKLVNADPREIVWTSGATESDNLAIKGAANFYAERGKHIITVKTEHKAVLDTCRELERQGFEVTYLDVQDDGLLSLDAFKAALRPDTILVSVMMVNNEIGVIQDIAALGEICREKGIIFHVDAAQATGKVEIDLQKLKVDLMSFSAHKTYGPKGIGALYVRRKPRVRIEAQMHGGGHERGFRSGTLATHQIVGMGEAFRLAREEMGTENERVRMLRDRLLAGLTQIEEVYVNGSMEHRVPHNLNISFNYVEGESLIMAIKELAVSSGSACTSASLEPSYVLRALGRNDELAHSSIRFTLGRFTTEQEIDFTIELIKSRVGKLRDMSPLWEMAQEGIDLNSVQWAAH
>NZ_CP021403.1|WP_003812460.1|2130854_2131265_+|Fe-S-cluster-assembly-scaffold-IscU
MAYSSKVLDHYENPRNVGSFDKGDDSVGTGMVGAPACGDVMKLQIKVNEAGVIEDARFKTYGCGSAIASSSLVTEWVKGKTLDEAMNIRNTQIAEELALPPVKIHCSILAEDAIKAAVQDYKTKHGAETPEAVAAN
>NZ_CP021403.1|WP_003812458.1|2131266_2131590_+|iron-sulfur-cluster-assembly-protein-IscA
MAVTLTQSAANHVGRYLQKRGKGIGLRLGVRTTGCSGMAYKLEYVDEQAADDVVFDSFGVKVFIDPKSLAYLDGTELDYAREGLNEGFRFSNPNEKATCGCGESFTV
>NZ_CP021403.1|WP_003812456.1|2131592_2132105_+|Fe-S-protein-assembly-co-chaperone-HscB
MAADDHFSLFGLPTRFALDPVQLEQAWRAVAARVHPDRYATASAAERRVAMQWAARANEAYRQLRDPMLRARYLCEQAGVDLQTESNTAMDPAFLMQQMEWREMLDDARRDPAAFAALRAELEQARLRMQQTLSELIDERGDYQQAGTKVREWMFVEKLAQELSAAQPMQ
>NZ_CP021403.1|WP_010930571.1|2132234_2134097_+|Fe-S-protein-assembly-chaperone-HscA
MALLQISEPGDSPAPHQRKLAVGIDLGTTNSLVAAVRSSVPEVLADAQGQVLLPSAVRYLDGGAVRIGREALLEQARDPLNTIVSVKRFMGRSAADAAASGAPYEFVDAPGMVRLRTVQGDLSPVEVSAQILAVLRQRAEDVLGDDLVGAVITVPAYFDDAQRQATRDAARLAGLNVLRLLNEPTAAAIAYGLDQAAEGIYAVYDLGGGTFDISILRLTQGVFEVIATGGDTALGGDDFDSAIVAHACAGEDVAALPVADRRALLVAARAAREALTDQAQAPFEVTLRDGRAIQATLTRAQFEQLAEPLVGRTLDSARRALRDAGLAVGDVRGVVMVGGATRMPVVRQQVGALFGTEPLTNLDPDQVVALGAALQANLLAGNRALGEDWLLLDVIPLSLGLETMGGLVERIIPRNSTIPVARAQEFTTFKDGQTAMSVHVVQGERDLVSDCRSLARFELRGIPPMVAGAARIRVTFQVDADGLLSVTAREQSTGVEAAVAVKPSYGLSDDEIARMLADSVTQADSDARARMLREQQVEARQLVESVGAALAADGDLLDPAERATVDQRLQAAAQAQSLDDVEAVRAAVQALSDATEEFAARRMDRSIRSALAGRKLDELA

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Crispr_ID: NZ_CP021403_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021403_4

3629538-3629631

Orphan

Consensus_repeat	Method
GTGCCTGTCCCGGCGGGGACAGGCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP021403_4

>merge|NZ_CP021403|4|3629538-3629631|CRISPRCasFinder
GTGCCTGTCCCGGCGGGGACAGGCACGCCCGCACAGCGGGCGCAGCGTGGGGGTTTTCCTGGGCCCGGGTGCCTGTCCCGGCGGGGACAGGCAC

>NZ_CP021403|4|4|3629538-3629631|CRISPRCasFinder
GTGCCTGTCCCGGCGGGGACAGGCAC	GCCCGCACAGCGGGCGCAGCGTGGGGGTTTTCCTGGGCCCGG
GTGCCTGTCCCGGCGGGGACAGGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021403.1\|WP_003815546.1\|3637598_3638000_-\|Zn-ribbon-domain-containing-OB-fold-protein	unknown	unknown	gnl\|CDD\|224462
NZ_CP021403.1\|WP_010929931.1\|3633481_3634630_-\|CoA-transferase	unknown	unknown	gnl\|CDD\|367110
NZ_CP021403.1\|WP_003814701.1\|3628980_3629451_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NZ_CP021403.1\|WP_010929789.1\|3624740_3625259_+\|MgtC/SapB-family-protein	unknown	unknown	gnl\|CDD\|224204
NZ_CP021403.1\|WP_010929791.1\|3621668_3622454_-\|crotonase/enoyl-CoA-hydratase-family-protein	unknown	unknown	gnl\|CDD\|181723
NZ_CP021403.1\|WP_010929933.1\|3631440_3632388_-\|dihydrodipicolinate-synthase-family-protein	unknown	unknown	gnl\|CDD\|188630
NZ_CP021403.1\|WP_003814694.1\|3623874_3624630_-\|TerC-family-protein	unknown	unknown	gnl\|CDD\|223930
NZ_CP021403.1\|WP_010929932.1\|3632594_3633485_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176107
NZ_CP021403.1\|WP_010929577.1\|3630391_3631342_-\|IS481-like-element-IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP021403.1\|WP_010929929.1\|3635646_3636807_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173849
NZ_CP021403.1\|WP_003820700.1\|3628547_3628892_+\|TIGR01244-family-phosphatase	unknown	unknown	gnl\|CDD\|225984
NZ_CP021403.1\|WP_019247419.1\|3618344_3619517_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173841
NZ_CP021403.1\|WP_003814691.1\|3622446_3623679_-\|CoA-transferase	unknown	unknown	gnl\|CDD\|367110
NZ_CP021403.1\|WP_003814685.1\|3620630_3621602_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270234
NZ_CP021403.1\|WP_003815550.1\|3636817_3637210_-\|MaoC-family-dehydratase	unknown	unknown	gnl\|CDD\|239525
NZ_CP021403.1\|WP_019247421.1\|3629861_3630260_+\|GTP-binding-protein	unknown	unknown	gnl\|CDD\|234569
NZ_CP021403.1\|WP_010929930.1\|3634637_3635609_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270296
NZ_CP021403.1\|WP_010929788.1\|3627047_3628448_+\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NZ_CP021403.1\|WP_010929928.1\|3637206_3637602_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021403.1\|WP_003814681.1\|3619642_3620620_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176106

Protein	Function_ID	Function_description	E-value
NZ_CP021403.1\|WP_003815546.1\|3637598_3638000_-\|Zn-ribbon-domain-containing-OB-fold-protein	gnl\|CDD\|224462	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only].	5.62422e-24
NZ_CP021403.1\|WP_010929931.1\|3633481_3634630_-\|CoA-transferase	gnl\|CDD\|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	7.23571e-127
NZ_CP021403.1\|WP_003814701.1\|3628980_3629451_+\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	9.38587e-30
NZ_CP021403.1\|WP_010929789.1\|3624740_3625259_+\|MgtC/SapB-family-protein	gnl\|CDD\|224204	COG1285, SapB, Uncharacterized membrane protein [Function unknown].	1.12064e-44
NZ_CP021403.1\|WP_010929791.1\|3621668_3622454_-\|crotonase/enoyl-CoA-hydratase-family-protein	gnl\|CDD\|181723	PRK09245, PRK09245, crotonase/enoyl-CoA hydratase family protein.	5.15941e-155
NZ_CP021403.1\|WP_010929933.1\|3631440_3632388_-\|dihydrodipicolinate-synthase-family-protein	gnl\|CDD\|188630	cd00408, DHDPS-like, Dihydrodipicolinate synthase family. Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stabilizes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.	1.66209e-66
NZ_CP021403.1\|WP_003814694.1\|3623874_3624630_-\|TerC-family-protein	gnl\|CDD\|223930	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism].	1.14565e-78
NZ_CP021403.1\|WP_010929932.1\|3632594_3633485_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176107	cd08415, PBP2_LysR_opines_like, The C-terminal substrate-domain of LysR-type transcriptional regulators involved in the catabolism of opines and that of related regulators, contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate-domain of LysR-type transcriptional regulators, OccR and NocR, involved in the catabolism of opines and that of LysR for lysine biosynthesis which clustered together in phylogenetic trees. Opines, such as octopine and nopaline, are low molecular weight compounds found in plant crown gall tumors that are produced by the parasitic bacterium Agrobacterium. There are at least 30 different opines identified so far. Opines are utilized by tumor-colonizing bacteria as a source of carbon, nitrogen, and energy. NocR and OccR belong to the family of LysR-type transcriptional regulators that positively regulates the catabolism of nopaline and octopine, respectively. Both nopaline and octopalin are arginine derivatives. In Agrobacterium tumefaciens, NocR regulates expression of the divergently transcribed nocB and nocR genes of the nopaline catabolism (noc) region. OccR protein activates the occQ operon of the Ti plasmid in response to octopine. This operon encodes proteins required for the uptake and catabolism of octopine. The occ operon also encodes the TraR protein, which is a quorum-sensing transcriptional regulator of the Ti plasmid tra regulon. LysR is the transcriptional activator of lysA gene encoding diaminopimelate decarboxylase, an enzyme that catalyses the decarboxylation of diaminopimelate to produce lysine. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.25236e-65
NZ_CP021403.1\|WP_010929577.1\|3630391_3631342_-\|IS481-like-element-IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	9.02206e-23
NZ_CP021403.1\|WP_010929929.1\|3635646_3636807_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|173849	cd01160, LCAD, Long chain acyl-CoA dehydrogenase. LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.	4.16688e-115
NZ_CP021403.1\|WP_003820700.1\|3628547_3628892_+\|TIGR01244-family-phosphatase	gnl\|CDD\|225984	COG3453, COG3453, Uncharacterized protein conserved in bacteria [Function unknown].	3.40043e-35
NZ_CP021403.1\|WP_019247419.1\|3618344_3619517_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|173841	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.	4.27565e-82
NZ_CP021403.1\|WP_003814691.1\|3622446_3623679_-\|CoA-transferase	gnl\|CDD\|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	8.36236e-118
NZ_CP021403.1\|WP_003814685.1\|3620630_3621602_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|270234	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) proteins present in a number of bacterial species, but mainly in proteobacteria. In eubacteria, at least three families of periplasmic binding-protein dependent transporters are known: the ATP-binding cassette (ABC) transporters, the tripartite ATP-independent periplasmic transporters, and the tripartite tricarboxylate transporters (TTT). Bug proteins are the PBP components of the TTT. Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.	2.06741e-117
NZ_CP021403.1\|WP_003815550.1\|3636817_3637210_-\|MaoC-family-dehydratase	gnl\|CDD\|239525	cd03441, R_hydratase_like, (R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit.	3.21769e-21
NZ_CP021403.1\|WP_019247421.1\|3629861_3630260_+\|GTP-binding-protein	gnl\|CDD\|234569	PRK00007, PRK00007, elongation factor G; Reviewed.	1.37761e-90
NZ_CP021403.1\|WP_010929930.1\|3634637_3635609_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	5.90573e-128
NZ_CP021403.1\|WP_010929788.1\|3627047_3628448_+\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	3.43796e-109
NZ_CP021403.1\|WP_003814681.1\|3619642_3620620_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176106	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LTTRs involved in degradation of aromatic compounds, such as CbnR, BenM, CatM, ClcR and TfdR, as well as that of other transcriptional regulators clustered together in phylogenetic trees, including XapR, HcaR, MprR, IlvR, BudR, AlsR, LysR, and OccR. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the substrate-binding domains from ionotropic glutamate receptors, LysR-like transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	2.33368e-60

>NZ_CP021403.1|WP_003814701.1|3628980_3629451_+|universal-stress-protein
MFKKILIPTDGSPLSAQAANAGICFARSTGAEVVALHVTQPFAATIGFDGMAAAYAITDEDYEKASAEQAEKYLKLILDRAETAGVKAESRAVSNFNVADGIVQAAGEAGCDLIFIGSHGRSGLSRLLLGSVTAKVLSLAHTAVLVYRVKEDKDKK
>NZ_CP021403.1|WP_003820700.1|3628547_3628892_+|TIGR01244-family-phosphatase
MSAAIKPLTENFAVAPQLGPADMADVAAAGYKSVIINRPDFEGGPDQPTAADVSQAAQALGLQVEYQPVVGSAMTAADVARFAELLRTMPGPVLAYCRTGTRCTNLFAAAQQLG
>NZ_CP021403.1|WP_010929788.1|3627047_3628448_+|PLP-dependent-aminotransferase-family-protein
MRQADATLVTQLADDLARRIDEHGLRPGTRLPSIRRMAEQSGVSRFTVVEAYDRLVARGLVQSRHGAGFFVRARSASLTALASARVPQAAPETPVRVDVSWLLRNMFRETAAGMPGGAGLLPPEWLDPDMVAAAVRAVGRTVRGNLVSYGSPQGYAPLRQQLASMLQADGVPAHPERNLLTTNGVTHGLDIVARHLIKPGDTVLVEDPAWFVIFGRLAAFGARPVGVPRGPDGPDLAMLDRLAAEHKPRLYIINGAVHNPIGHTLSAGAAYDILRLAERHDFMVVEDDTYADLHPGGAMKLAALDRLERVILVGGFSKMLAASLRVGYIAAGAETLQRLTDLKMLAGLTSPELGERVVHRVLVEGQYQRHIERVRARVNEARLRSIQALQQLGLSVPHEPHAGMFVWADCGRDSEPVARNAAERGMLLAPGTLFSPSGAPSTMLRFSVAMVDTPGIWQSIAAVMAQ
>NZ_CP021403.1|WP_010929789.1|3624740_3625259_+|MgtC/SapB-family-protein
MDTVWMEIWTTVRNEFADIPDVAEATRIVLRLGMAVALGGLLGYERERSGKAAGLRTHMLVALGAALFVLVPLQGGMEVGDLSRVLQGVIAGIGFLGAGVIIKLGNEGEIRGLTTSAGIWLTAAIGVAAGMGREATALASTLIALFVLAALRRLEKRIAARDDKRVVAQPPP
>NZ_CP021403.1|WP_003814694.1|3623874_3624630_-|TerC-family-protein
MDYLVSLAQQPAAWAALATLIAMEVVLGIDNLIFISILTNKLPPQHQTKARRIGIGMALILRLALLGTVAFIVQLTQPVFELFGHGFSWRDVILVAGGLFLVWKATKEIHHHVDPNPGDDMFGGKAATLGFAAAVAQILMLDLVFSIDSIITAVGMTEHIPIMFVAVIVAVAVMLLAAEPLARFIERNPTVVMLALAFLMMIGMTLIAEGFGAHVPKGYIYAAMAFSALVEGLNMMARRAREGRGAGAAGG
>NZ_CP021403.1|WP_003814691.1|3622446_3623679_-|CoA-transferase
MSGPLEGVRILDVTTVLMGPYATQILGDLGADVIKVEPPAGDNVRGIGPGRHADMGGIFLHANRSKRSIALDLKNPAGREALLKVAATCDVLVYNVRPQAMARLGLSYAEVAQANPSILYVGMYGYDQRGPYAARAAYDDLIQGAVGIPSLSVEAGSDIPRYAPSAMVDRIVGISAANAVTAGLYHRARTGQGQAIDVPMFETMAHLILGDHMMGQTFEPPLGPPGYPRILNADRRPYATRNGHICVLLYADKHWKAFFELIGQPGRDAADPRFRDIGTRTQHIHAIYRLVSDAIASRTTEEWLAAFEAADIPAMPVHTMASLLRDPHLEAIGFFGMVDHPSEGAVRMMAVPSRWSGTPPQPRGHAPRLGEHSVDVLKEAGYDDEAIAALVRNGAAIAAARQLPEGTDHD
>NZ_CP021403.1|WP_010929791.1|3621668_3622454_-|crotonase/enoyl-CoA-hydratase-family-protein
MTDFLRHERHGGVLLLTMDRERTRNALSDADAVEALVQACARIGADLSVRAVVLTGSHGVFSSGGNLKTLSDTVGAGLGEPVHSLQAYRSGIQRIPLALYNLEVPTIAAVNGPAIGAGCDLACMCDIRLAARQASFAESFVKLGLTPGDGGAWLLPRIVGMSRACELAFTGRSIDAARARELGLVSEVFDADALLPAALALAQEIAQHSGHALRLTKRLLREGQHTRLDTLLELSAGFQALAHHTQEHAGALDAHLSRKRG
>NZ_CP021403.1|WP_003814685.1|3620630_3621602_-|tripartite-tricarboxylate-transporter-substrate-binding-protein
MHSRTLALALLSVAALAQGGSARAASDYPAHPVKIIVSLPPGSGADTTARFLSKHLAERFKQPFVVENRPGGNSFIAAQAVATAPPDGYTLFVASNSPMTTNAAVFKNLPYDAVKDFAPVAPIARFPMALVVPANSPYRSVADLVAAARAAPGQLNFASGTATYQVVLELFHEQNGIKATHVPYKGTSAALADVAGGVVQYSVADVSAALPLIRGGKLRPLAVTSTRRIKDLPDVPTMQESGNKGFEAYAWTAAFFPAKVDPAIVARVSDAVQALVRSQEGKAFMEQLGGEPFVGGPDTLAAFQRDELASMRRIAKLANIQQE
>NZ_CP021403.1|WP_003814681.1|3619642_3620620_+|LysR-family-transcriptional-regulator
MWTGQYIVHIASPAHHWRRAVELRQLKQLLVLSETLNFHRAAERLHMAQPPLSTAIKKLEQELGVQLFERLPAGLQPTPAAEVVLRYARATLFYADEIQRAAQEGASGKQGMLKVGFVGSSIYSLMPQLLSAFRKDYPRVDLVIEESTTVDLLRRLDAHTLDVALVRFPVLEPSTARITLLQADHLMLAVPAGSRYAQRDDVALDELADEPFIGYSRTHVPGMHALIMYAFQQYGVVPHIAQEAIQVQTILSLVESGLGLAIVPKVACRQAGSGVRLVNVPQLAETIKVGIALAVHPDNATPTTANFVDMACRLMQTEPAAGQAR
>NZ_CP021403.1|WP_019247419.1|3618344_3619517_-|acyl-CoA-dehydrogenase
MGAILGTIIEALQLAAIPAHDEALRPAVRAFLDEALREMPADRRARSWMGHDAEFSRALARQGWLGLTLPVEYGGAGRSNFARFVLSEELLAVGAPVSAHWVADRQTAPLILRFGSPAQRAFYLPRIIRGEAFFAIGMSEPDTGSDLASVRTRATPVADGWLLNGRKIWTTNAHRSHYMCALVRTSGAPEDRHRGLSQMIFDLALPGIEIRPIRDIAGDAHFCEVLFDNVLLPHDALVGEEGSGWRQVMAELALERSGPERIYSSMVLLDGWLAHLRCDAAPQRAQVCLAGRLAARLAVLRSMSLAVSQRLEQGADASLAAVLVKDLGTEFEQAVPELIGQALHASPQPAPDDVLMRTLAYLTLINPTFSLRGGTRHILRGIIARELGLR
>NZ_CP021403.1|WP_019247421.1|3629861_3630260_+|GTP-binding-protein
MTRRTSIERYRNIGISAHIDAGKATTTERILFYTGITHKLGEVHEGAATMDWMEQEQGRGITITSAATTAFWRGMAGNYPEHRINIIDTPGHVDFTIEVERSMRVLDGACMVYDSVGGVQEVATVMVVLPGQ
>NZ_CP021403.1|WP_010929577.1|3630391_3631342_-|IS481-like-element-IS481-family-transposase
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHS
>NZ_CP021403.1|WP_010929933.1|3631440_3632388_-|dihydrodipicolinate-synthase-family-protein
MQASHGARIDEQTSGVYVIAATPFADDGELDLASLDSLTDFYLDKDVAGLTILGMMGEASKLTEAETATVMTRILKRVDGRVPVVVGVSHPSNRHLERLARQAMELGAAGVMVAPAAGRHTDDQVYGYYATVAERLGADIPICLQDFPQSAGVHTSVAVIHRLVDDFPQVVMLKHEDFPGMRKLSQVRARSEAEGRRRISILVGNGGLFLPQEMLRGADGAMTGFAYPEMLVQVCRLFAAGKAEAAEDLFNLYLPLLRHEFQYGIGLALRKETLRRRGAIRSAYVRQPGPALDAVDHAELGRLIARLEAQLGRAA
>NZ_CP021403.1|WP_010929932.1|3632594_3633485_+|LysR-family-transcriptional-regulator
MKLNLRQIEVFRAVMITGSIRGASELLFVSQPAVSRLLSHMEQRIGFALFERIRGRLYATLEARKLFHEVEAVYAGVQRVNDMARDLFEHQEGILNLVASPSLGQMLIPAAIAQYRQAHPQVKLSFHHLTQAPLTERLLKRQADLALTILPAGHPNLEQEEIGAARMVLICPPGHPLAGREPVGAEALAPYPLVAYERGSAFGQKLQAWFDAQSVAARPVIEVGSPQNTCALVQAGAGVALVDEFSARSWPGAGFVMRPVRDLAPLTAYLLRLREEPASHLMQSFIETLRRVMRRA
>NZ_CP021403.1|WP_010929931.1|3633481_3634630_-|CoA-transferase
MLNHALAGITVLDFSQGIAGPHGACLLGEMGAEVIKIEPPAGDWLRGLGHRQGGTSVLFGYFNRGKAGVALDLKDHAQRRQALALIDKADVLIESNRPGVMARLGLGYEQARQRNPGLVYISVTGFGQDGPHRDLPATDAAMQAYSGFSFGAGDMRDPVRVRVSVVDIVTGVYVSNAALAALMARHGNQGQGQYIDLSLMHGISAVQGAKYAEHAATRGVISRELYAAIGIYPTRDGHIALSAMRDQQVTDFIGLAGRADLLADPRYATQQARYDNQDELRALIAAELAKQPTAHWIEAARRIDLICQPVQTYDQFRQDPQVRTYELFQDMDLGYDMPLPAVRMPGMTATQASLRPPPRLGADTAAVLRRHGASPPSADATP
>NZ_CP021403.1|WP_010929930.1|3634637_3635609_-|tripartite-tricarboxylate-transporter-substrate-binding-protein
MHGKNALRALLAGLALGATAAGAAPYPERPVRLIAPIAVGGLTDTLARLVASGLADKLGQPVVVENKPGAGGIIGMEAAAQAAPDGYTLILVYQGVAAVNASLYKNLPYDTRRDFAPVAGLGNFPLVLVASPASGIQSVGALLERAGKQAKAPSYASAGNATTSHLTMELFKNASGLQALHVPYKGEGPANTDVAGGQVDIAFSSLASVAPLVKSGRLVALGISTPERSAVLPDVPTIAQAGVADFEAVGWYGLLAPAGTPAEVVAKLSDAVAAVLDQPAIRAKLEALGVNARATPAADFGRQIDAETEKWRAVIQTAGITLD
>NZ_CP021403.1|WP_010929929.1|3635646_3636807_-|acyl-CoA-dehydrogenase
MQFTHEHRELARTTRRIIAEHLDPYLDEWEAAQMFPAHQVMKALGSAGLLGIGKPAEYGGMALDFSYEMVFAETLGEVRSSGLSSAIGVQSTMCTPALARHGSDALKRAYLAPTIAGDLVGCIGASEASAGSDVSQIKTWARRDGDDYVINGSKMWITNGVQGDWICLLCNTSQEGGPHKNKSLIIVPLDTPGVSVSRKLDKLVLRASDTAELFFDDVRVPVSNRIGAENMGFIYQMEQFQEERMFVAARGMRSMERVIEETIAYAGQRQVFGGTVLSNQVVYHKLAQMQTEIEALRSLLYRAIGQYLDGQDITQLASMAKYCAGRLSMRIPNECLQFWGGQGVMNENWISRAYRDLRQTAIGGGANEIMLEVIAKTMGIHPGKRA
>NZ_CP021403.1|WP_003815550.1|3636817_3637210_-|MaoC-family-dehydratase
MRNTMTQRLEEVSMRVTQADIDIYAELTDDFNPLHVDPAFAATTPMGGTIAHGTLSVNLIWQSLARSLGAAALARIDLDIRFLKPLFAGGAITAGGQPDAAEPDRYEVWVKGADGATLIAGHARLAPITD
>NZ_CP021403.1|WP_010929928.1|3637206_3637602_-|hypothetical-protein
MTQLYTYETFTPGTVLGEWAEPLDARLVATWGRLFGAEARDQPARQVGLTVALMIRAYLNVVTPRPPGNIHAQQILSIDGLPGVGETVRSRIRCLGKEIRRERRYLQLEVSGVGERERNLYTGRMNLIWAA
>NZ_CP021403.1|WP_003815546.1|3637598_3638000_-|Zn-ribbon-domain-containing-OB-fold-protein
MDKPPITPNAESLPFWQGCRDHRLRYQQCASCGTVQRIPRAVCTHCHGRALQWRDSAGQGVVLSHTTVRRAPTPAFKADTPYAIALVDLDEGFRLMVNVRGGAGAPLAIGARVRIVFEARGDGAVPIAEMETP

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

27282 : 79599

Synechococcus_phage(25.0%)

tRNA,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010929577.1\|27282_28233_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_023995007.1\|28314_28650_-	CoA transferase	NA	NA	NA	NA
WP_010929578.1\|28674_29109_-	hypothetical protein	NA	NA	NA	NA
WP_010929579.1\|29141_30368_-	thiolase family protein	NA	NA	NA	NA
WP_010929580.1\|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA
WP_010929581.1\|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_023995008.1\|32163_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_010929583.1\|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA
WP_010929584.1\|34625_35576_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_003814398.1\|35572_36763_-	MFS transporter	NA	NA	NA	NA
WP_003814400.1\|36949_37924_+\|tRNA	glycine--tRNA ligase subunit alpha	NA	NA	NA	NA
WP_010929586.1\|37925_40064_+\|tRNA	glycine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_003814404.1\|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA
WP_003814405.1\|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_010929587.1\|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA
WP_019247766.1\|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA
WP_003814412.1\|42687_43218_+	peptide deformylase	E3SLL2	Synechococcus_phage	3.7e-12	35.4
WP_023852754.1\|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA
WP_003815267.1\|45112_45748_+	hypothetical protein	NA	NA	NA	NA
WP_003815265.1\|45719_45956_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_003815255.1\|46083_46977_+	membrane protein	NA	NA	NA	NA
WP_010929590.1\|48146_49394_+	homoserine O-acetyltransferase	NA	NA	NA	NA
WP_003817748.1\|49390_50005_+	methionine biosynthesis protein MetW	NA	NA	NA	NA
WP_010929591.1\|50140_51091_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_029443813.1\|51133_52390_+	muropeptide transporter	NA	NA	NA	NA
WP_010929592.1\|53621_54356_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA
WP_019247224.1\|54361_54952_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.2e-20	33.6
WP_003817737.1\|54976_55666_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_023852650.1\|55662_56424_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_010929594.1\|56503_57403_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_005012808.1\|57496_58447_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010929595.1\|59247_60474_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
WP_010929596.1\|60473_60893_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_010929597.1\|61076_62018_-	hypothetical protein	NA	NA	NA	NA
WP_010929598.1\|62441_63278_-	hypothetical protein	NA	NA	NA	NA
WP_019248465.1\|64065_64383_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA
WP_019247832.1\|65578_66850_-	TRAP transporter large permease	NA	NA	NA	NA
WP_010929603.1\|67479_68661_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA
WP_003816713.1\|70124_70439_+	DUF1153 domain-containing protein	NA	NA	NA	NA
WP_010929604.1\|71631_73539_+	molecular chaperone HtpG	A0A1B1ISV4	uncultured_Mediterranean_phage	1.1e-117	37.2
WP_010929605.1\|73700_74321_-	glutathione S-transferase	NA	NA	NA	NA
WP_003807804.1\|74352_74934_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	A0A1W6DX33	Sphingobium_phage	1.7e-05	54.3
WP_003807805.1\|75022_75274_-	hypothetical protein	NA	NA	NA	NA
WP_010929606.1\|75275_76118_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA
WP_010929607.1\|76223_77633_+	signal recognition particle protein	NA	NA	NA	NA
WP_005012067.1\|77629_78580_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_041166334.1\|78654_79599_+\|transposase	IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

164885 : 302537

118

Klosneuvirus(10.53%)

tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005015810.1\|164885_165836_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010929659.1\|167279_168182_-	YgcG family protein	NA	NA	NA	NA
WP_003815889.1\|168159_168789_-	LemA family protein	NA	NA	NA	NA
WP_029443820.1\|169119_170502_+	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	5.3e-42	29.5
WP_010929661.1\|170535_171165_+	LysE family transporter	NA	NA	NA	NA
WP_003815895.1\|171213_172821_+	peptide chain release factor 3	A0A2K9L6L3	Tupanvirus	9.3e-14	37.8
WP_010929663.1\|172845_173529_+	hypothetical protein	NA	NA	NA	NA
WP_003815898.1\|173610_174087_-	bacterioferritin	NA	NA	NA	NA
WP_077068973.1\|174127_174307_+	hypothetical protein	NA	NA	NA	NA
WP_010929664.1\|176357_176885_+	META domain-containing protein	NA	NA	NA	NA
WP_010929665.1\|176976_177792_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA
WP_003808370.1\|177852_178587_+	sulfurtransferase	NA	NA	NA	NA
WP_010929666.1\|178624_180703_-\|tRNA	methionine--tRNA ligase	A0A1V0SHR2	Klosneuvirus	1.5e-27	23.6
WP_003808374.1\|180952_181225_-	hypothetical protein	NA	NA	NA	NA
WP_014486043.1\|181323_182412_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_010929668.1\|182415_184320_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA
WP_010929670.1\|188050_188614_+	dCTP deaminase	S5VM63	Pseudomonas_phage	2.6e-72	75.3
WP_003808385.1\|188621_189044_-	glyoxalase	NA	NA	NA	NA
WP_010929671.1\|189071_189491_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA
WP_077274090.1\|189519_189966_-	GNAT family N-acetyltransferase	Q9AZG4	Lactococcus_phage	1.2e-08	29.4
WP_003808391.1\|190092_190590_+	hypothetical protein	NA	NA	NA	NA
WP_003808393.1\|190744_193015_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA
WP_010929672.1\|193063_194296_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_010929591.1\|194394_195345_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_076879535.1\|195390_196083_+	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	2.4e-83	73.8
WP_019248671.1\|196079_196973_+	ZIP family metal transporter	NA	NA	NA	NA
WP_010929675.1\|197367_198468_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA
WP_010929676.1\|198549_198924_+	glycine cleavage system protein GcvH	NA	NA	NA	NA
WP_010929677.1\|198983_201848_+	aminomethyl-transferring glycine dehydrogenase	E3SN07	Prochlorococcus_phage	1.2e-261	51.4
WP_010929678.1\|201992_202733_-	FadR family transcriptional regulator	NA	NA	NA	NA
WP_010929679.1\|202802_204014_+	CoA transferase	NA	NA	NA	NA
WP_010929680.1\|204042_205011_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_010929699.1\|206729_207053_+	phosphate starvation-inducible protein	NA	NA	NA	NA
WP_010929698.1\|207157_208207_-	cyclase	NA	NA	NA	NA
WP_003819081.1\|208203_209028_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA
WP_003807672.1\|209028_209325_-	YciI family protein	NA	NA	NA	NA
WP_003807674.1\|209350_209626_-	muconolactone Delta-isomerase	NA	NA	NA	NA
WP_003819086.1\|209682_210327_-	CoA transferase subunit B	NA	NA	NA	NA
WP_010929696.1\|210326_211013_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA
WP_010929695.1\|211142_211994_+	IclR family transcriptional regulator	NA	NA	NA	NA
WP_010929694.1\|212044_212770_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_010929693.1\|212801_214151_-	short-chain fatty acid transporter	NA	NA	NA	NA
WP_010929692.1\|214261_215194_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA
WP_033446321.1\|215651_218447_-\|protease	serine protease autotransporter SphB1	NA	NA	NA	NA
WP_010929690.1\|219040_221983_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA
WP_010929689.1\|222054_222774_+	7-cyano-7-deazaguanine synthase QueC	A0A0A0RPC6	Escherichia_phage	8.0e-50	43.9
WP_010929688.1\|222812_223361_-	N-acetyltransferase	A0A2H4J136	uncultured_Caudovirales_phage	1.2e-21	41.7
WP_010929687.1\|223515_224415_+	virginiamycin B lyase	NA	NA	NA	NA
WP_005012808.1\|224439_225390_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_127796002.1\|225376_225577_-	hypothetical protein	NA	NA	NA	NA
WP_003818947.1\|225608_226304_+	FadR family transcriptional regulator	NA	NA	NA	NA
WP_019247308.1\|226320_227733_+	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_010929684.1\|227845_229276_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_010929683.1\|229317_231231_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA
WP_010929682.1\|231549_232116_+	preprotein translocase subunit SecD	NA	NA	NA	NA
WP_010929681.1\|232206_233208_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA
WP_005012067.1\|233322_234273_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010927663.1\|234359_235310_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_010930742.1\|235306_236257_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_153302767.1\|236243_236417_-	hypothetical protein	NA	NA	NA	NA
WP_010929700.1\|236355_237153_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_003814363.1\|238102_238513_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA
WP_003814358.1\|239534_240278_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_003814356.1\|240321_241365_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA
WP_003814355.1\|241535_243638_+	TRAP transporter large permease subunit	NA	NA	NA	NA
WP_003814351.1\|245048_246005_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_010929701.1\|246023_246515_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_010929702.1\|246511_247867_-	polynucleotide adenylyltransferase PcnB	A0A1B1IVF3	uncultured_Mediterranean_phage	3.4e-25	36.8
WP_010929703.1\|247867_248566_-	HAD-IB family hydrolase	NA	NA	NA	NA
WP_010929704.1\|248562_249264_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA
WP_003814339.1\|249516_250566_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	5.6e-68	43.6
WP_003814337.1\|250671_251613_-\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_010929705.1\|251609_253499_-	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	3.3e-79	32.8
WP_003814332.1\|253585_254224_+	membrane protein	NA	NA	NA	NA
WP_019247543.1\|254366_255752_-	N-acetylmuramoyl-L-alanine amidase	A0A2H4JCM7	uncultured_Caudovirales_phage	4.5e-17	30.3
WP_010929706.1\|255682_256219_-\|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
WP_010929707.1\|256370_257762_+	class II fumarate hydratase	NA	NA	NA	NA
WP_010929708.1\|257778_258759_-	AEC family transporter	NA	NA	NA	NA
WP_003814324.1\|258894_259878_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA
WP_010929709.1\|259942_260842_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003814321.1\|260948_262703_+	gamma-glutamyltransferase	NA	NA	NA	NA
WP_010929710.1\|262710_263835_-	CoA transferase	NA	NA	NA	NA
WP_010929711.1\|263848_264829_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_065470066.1\|265559_266528_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_005012067.1\|266608_267559_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010929712.1\|268118_268664_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA
WP_010929713.1\|268747_270367_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_004567834.1\|270382_271537_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_003817696.1\|271550_271676_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA
WP_010929714.1\|271672_273424_+	thiol reductant ABC exporter subunit CydD	W8CYL7	Bacillus_phage	3.4e-09	23.8
WP_010929715.1\|273420_275100_+	thiol reductant ABC exporter subunit CydC	W8CYL7	Bacillus_phage	3.6e-16	27.6
WP_085964336.1\|275135_275711_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	1.4e-28	43.1
WP_010929717.1\|276853_277132_+	DUF4148 domain-containing protein	NA	NA	NA	NA
WP_005012067.1\|278175_279126_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_077068974.1\|279112_279328_-	hypothetical protein	NA	NA	NA	NA
WP_010929718.1\|279403_279565_+	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_010929719.1\|279572_279713_+	hypothetical protein	NA	NA	NA	NA
WP_003815821.1\|280230_280680_-\|protease	ClpXP protease specificity-enhancing factor	NA	NA	NA	NA
WP_003815819.1\|280689_281301_-	stringent starvation protein A	NA	NA	NA	NA
WP_019247426.1\|281459_282314_-	cytochrome c1	NA	NA	NA	NA
WP_003815816.1\|282333_283716_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA
WP_003815815.1\|283780_284422_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA
WP_010929721.1\|284561_285020_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA
WP_010927226.1\|285044_285821_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA
WP_014906092.1\|285874_287011_+\|protease	trypsin-like serine protease	W5SAB9	Pithovirus	1.2e-07	31.2
WP_005015810.1\|287007_287958_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003807705.1\|288056_288683_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA
WP_003807706.1\|288705_289632_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA
WP_003819100.1\|289640_291227_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010929723.1\|291223_292228_-	alpha/beta hydrolase	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	7.5e-30	31.5
WP_003807710.1\|292427_293288_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_010929724.1\|293319_294321_-	2-isopropylmalate synthase	NA	NA	NA	NA
WP_003819104.1\|294391_295201_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003819105.1\|295278_297138_+	dihydroxy-acid dehydratase	NA	NA	NA	NA
WP_010929725.1\|297266_298469_-	MFS transporter	NA	NA	NA	NA
WP_004566082.1\|298582_299464_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004566083.1\|300966_301527_-	5'-3'-deoxyribonucleotidase	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	3.2e-14	30.8
WP_005013747.1\|301586_302537_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

556341 : 622744

Acinetobacter_phage(25.0%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023852617.1\|556341_557292_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_003815367.1\|558615_559392_-	enoyl-CoA hydratase	NA	NA	NA	NA
WP_010931383.1\|559426_561199_+	M61 family metallopeptidase	NA	NA	NA	NA
WP_010931382.1\|561200_562103_-	NAD(P)/FAD-dependent oxidoreductase	G3MA85	Bacillus_virus	1.9e-08	24.0
WP_003817821.1\|562227_562587_+	dihydroneopterin aldolase	NA	NA	NA	NA
WP_010931381.1\|562618_563581_+\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	4.6e-93	64.5
WP_005012067.1\|563678_564629_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931380.1\|564641_565577_-	D-2-hydroxyacid dehydrogenase family protein	A0A1J0F959	Only_Syngen_Nebraska_virus	6.4e-15	27.7
WP_010931379.1\|565636_566476_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA
WP_010931378.1\|566472_567642_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA
WP_003815379.1\|567638_568928_-	murein transglycosylase A	NA	NA	NA	NA
WP_003815381.1\|568970_569345_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA
WP_003815384.1\|569450_570188_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
WP_010931377.1\|570195_570900_+	phosphoglycolate phosphatase	NA	NA	NA	NA
WP_010931376.1\|571163_572684_+	anthranilate synthase component I	S4VT78	Pandoravirus	9.0e-43	32.1
WP_003815390.1\|572739_573303_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	1.1e-65	62.1
WP_003817833.1\|573321_574353_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	7.4e-73	42.7
WP_010931375.1\|574349_575138_+	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	5.1e-66	53.0
WP_005012067.1\|578057_579008_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931374.1\|580230_581133_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003814312.1\|581134_581989_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_010931373.1\|582035_583145_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_010931372.1\|583155_583674_-	flavin reductase family protein	NA	NA	NA	NA
WP_003814302.1\|583703_584336_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA
WP_003814300.1\|584407_585067_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA
WP_003814298.1\|585063_586284_-	MFS transporter	NA	NA	NA	NA
WP_019247745.1\|586552_587425_+\|tRNA	tRNA threonylcarbamoyladenosine dehydratase	NA	NA	NA	NA
WP_010931370.1\|587580_588318_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_023852728.1\|588320_589916_-	AMP-binding protein	NA	NA	NA	NA
WP_010931368.1\|590047_591037_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_010927020.1\|591033_591744_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_010931363.1\|591839_592856_-\|transposase	IS110-like element IS1663 family transposase	NA	NA	NA	NA
WP_003814287.1\|593127_593754_-	hypothetical protein	NA	NA	NA	NA
WP_010931367.1\|593809_594937_-	aminodeoxychorismate synthase component I	S4VT78	Pandoravirus	3.8e-38	37.8
WP_003814283.1\|594942_600660_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	1.0e-195	39.5
WP_003814281.1\|600943_601159_+	hypothetical protein	NA	NA	NA	NA
WP_003814277.1\|601227_602172_-	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	8.4e-07	23.2
WP_003814275.1\|602360_603296_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_010931365.1\|603413_604985_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_019247692.1\|605064_606273_+	ABC transporter permease	NA	NA	NA	NA
WP_019247693.1\|606770_607688_+	DMT family transporter	NA	NA	NA	NA
WP_003814254.1\|610048_610270_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA
WP_010929632.1\|610600_611617_+\|transposase	IS110-like element IS1663 family transposase	NA	NA	NA	NA
WP_003814252.1\|611701_611953_-	cell division topological specificity factor MinE	NA	NA	NA	NA
WP_003814250.1\|611956_612772_-	septum site-determining protein MinD	NA	NA	NA	NA
WP_010931362.1\|612884_613763_-	septum site-determining protein MinC	NA	NA	NA	NA
WP_003820957.1\|613874_615638_-\|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	A0A222YZ70	Escherichia_phage	5.0e-162	50.0
WP_010931361.1\|615753_617094_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_010927010.1\|618163_619588_-	HAMP domain-containing protein	NA	NA	NA	NA
WP_003814239.1\|619587_620289_-	response regulator	W8CYM9	Bacillus_phage	5.6e-32	36.6
WP_094145976.1\|621793_622744_+\|transposase	IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_4

724420 : 756229

Pseudomonas_phage(33.33%)

tRNA,transposase,protease,integrase

attL 721719:721737|attR 741607:741625

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
721719:721737	attL	NA	NA	NA	NA
WP_029443720.1\|724420_725068_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_010931307.1\|725064_725847_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_010931306.1\|725919_727011_+	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_010931305.1\|727290_728418_+\|integrase	site-specific integrase	A0A1B0VMI6	Pseudomonas_phage	1.4e-48	33.6
WP_010931304.1\|728759_729806_+	Fic family protein	NA	NA	NA	NA
WP_010931303.1\|729953_733073_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA
WP_010931302.1\|733074_736026_+	restriction endonuclease subunit M	G8I4P9	Mycobacterium_phage	2.9e-21	25.1
WP_010931301.1\|736041_737253_+	AAA family ATPase	NA	NA	NA	NA
WP_076879586.1\|737249_737450_+	hypothetical protein	NA	NA	NA	NA
WP_005013747.1\|737436_738387_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_077274087.1\|738403_738898_+	DUF4276 family protein	NA	NA	NA	NA
WP_019247740.1\|738901_739159_+	hypothetical protein	NA	NA	NA	NA
WP_019248455.1\|739702_740614_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA
WP_029443992.1\|740695_740980_+	ATP-dependent helicase	A0A1V0SIN4	Klosneuvirus	6.8e-05	34.1
WP_005012067.1\|741763_742714_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
741607:741625	attR	NA	NA	NA	NA
WP_019247178.1\|743132_745697_-	autotransporter domain-containing protein	NA	NA	NA	NA
WP_019247179.1\|745741_747595_-	hypothetical protein	NA	NA	NA	NA
WP_014905963.1\|747927_749499_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_005012067.1\|750940_751891_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_014905961.1\|751976_752717_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_029443749.1\|752943_753891_-	hypothetical protein	NA	NA	NA	NA
WP_010929591.1\|755278_756229_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_5

1006170 : 1063830

Bacillus_virus(22.22%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005012067.1\|1006170_1007121_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_014486100.1\|1007223_1007886_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_019249309.1\|1007980_1008151_+	hypothetical protein	NA	NA	NA	NA
WP_019247599.1\|1008503_1009505_+	amidase	NA	NA	NA	NA
WP_003818702.1\|1009507_1010704_+	CoA transferase	NA	NA	NA	NA
WP_014486098.1\|1010724_1011528_+	enoyl-CoA hydratase	NA	NA	NA	NA
WP_019247598.1\|1011608_1011905_+	hypothetical protein	NA	NA	NA	NA
WP_019247597.1\|1011935_1012499_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_014486097.1\|1012539_1013397_+	ABC transporter permease	NA	NA	NA	NA
WP_003818698.1\|1013404_1014154_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	6.2e-29	33.5
WP_014486096.1\|1014175_1015048_+	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_014486095.1\|1015076_1015856_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_014486094.1\|1015889_1016687_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_014486092.1\|1018138_1019311_+	AMP-binding protein	A0A2H4PQU7	Staphylococcus_phage	1.1e-59	39.6
WP_003808978.1\|1019341_1019734_+	hypothetical protein	NA	NA	NA	NA
WP_014486091.1\|1019727_1020588_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_003818691.1\|1020591_1021554_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_014486089.1\|1022330_1023020_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	4.8e-12	28.8
WP_010931181.1\|1025179_1026049_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010926062.1\|1026119_1026815_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_010931179.1\|1026804_1027314_+	nucleoside deaminase	NA	NA	NA	NA
WP_010931178.1\|1027310_1028531_+	MFS transporter	NA	NA	NA	NA
WP_010931177.1\|1028478_1029381_-	transcriptional regulator GcvA	NA	NA	NA	NA
WP_023997744.1\|1030267_1031554_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_010931176.1\|1031592_1032966_+	amidase	NA	NA	NA	NA
WP_010931175.1\|1033004_1033706_-	riboflavin synthase	NA	NA	NA	NA
WP_010931174.1\|1034004_1034994_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_003809010.1\|1035094_1035556_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_010931173.1\|1035571_1036120_-	hypothetical protein	NA	NA	NA	NA
WP_010931172.1\|1036261_1037737_-	acyl--CoA ligase	Q75ZG1	Hepacivirus	3.0e-35	25.6
WP_010931171.1\|1037842_1038934_+	DUF2817 domain-containing protein	NA	NA	NA	NA
WP_010931170.1\|1038937_1039720_-	ABC transporter permease	NA	NA	NA	NA
WP_010931169.1\|1039729_1040518_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.1e-33	40.0
WP_010931168.1\|1041643_1042078_-	PaaI family thioesterase	NA	NA	NA	NA
WP_010931167.1\|1042074_1043085_-	zinc-binding dehydrogenase	NA	NA	NA	NA
WP_003809025.1\|1043128_1044055_-	VOC family protein	NA	NA	NA	NA
WP_003809026.1\|1044341_1044710_+	DUF861 domain-containing protein	NA	NA	NA	NA
WP_005013747.1\|1044925_1045876_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931165.1\|1045920_1048347_+	copper-translocating P-type ATPase	A0A218MNH6	uncultured_virus	1.2e-86	33.8
WP_010931164.1\|1048395_1049088_+	HD domain-containing protein	A0A1D6Y7U0	Golden_Marseillevirus	4.7e-07	29.9
WP_010931163.1\|1049160_1050360_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
WP_003819549.1\|1050377_1051283_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010931162.1\|1051398_1052328_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_010931161.1\|1052353_1053700_+	MFS transporter	NA	NA	NA	NA
WP_010931160.1\|1053727_1054477_+	SDR family oxidoreductase	A0A0M4JSW6	Mollivirus	1.2e-11	26.4
WP_010931159.1\|1054490_1055273_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_005012067.1\|1055465_1056416_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_076879583.1\|1056476_1057622_-	porin	NA	NA	NA	NA
WP_003815281.1\|1058098_1058935_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	1.6e-33	33.3
WP_023997028.1\|1059004_1059970_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_005012067.1\|1059966_1060917_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_019247492.1\|1061301_1061844_+	hypothetical protein	NA	NA	NA	NA
WP_005012067.1\|1062879_1063830_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_6

1068311 : 1100200

Bacillus_virus(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023852714.1\|1068311_1069262_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_010931154.1\|1069258_1071367_-	AsmA family protein	NA	NA	NA	NA
WP_003820814.1\|1071511_1072171_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA
WP_003820813.1\|1072202_1072667_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA
WP_019248355.1\|1072942_1073128_+	hypothetical protein	NA	NA	NA	NA
WP_010931153.1\|1073179_1073932_-	DNA-binding protein	NA	NA	NA	NA
WP_010931152.1\|1073938_1075201_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_023852748.1\|1075242_1076481_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_003820806.1\|1077558_1078686_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.2e-23	32.3
WP_003814524.1\|1078696_1079524_-	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_010931150.1\|1079510_1080377_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_010931149.1\|1081743_1082148_-	hypothetical protein	NA	NA	NA	NA
WP_005012808.1\|1082239_1083190_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_033446288.1\|1083559_1084471_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_003820799.1\|1084485_1085196_+	FadR family transcriptional regulator	NA	NA	NA	NA
WP_010931147.1\|1085192_1086437_+	DUF521 domain-containing protein	NA	NA	NA	NA
WP_003820797.1\|1086438_1086873_+	DUF126 domain-containing protein	NA	NA	NA	NA
WP_003814535.1\|1086901_1087207_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_005012067.1\|1087304_1088255_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_023994659.1\|1088311_1089460_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_010930176.1\|1089540_1090491_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931144.1\|1091021_1091819_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_019247918.1\|1091866_1092520_-	ABC transporter permease	NA	NA	NA	NA
WP_003814544.1\|1092476_1093565_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	8.7e-32	36.4
WP_003814547.1\|1093729_1095955_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA
WP_023852715.1\|1098232_1099129_+	inositol monophosphatase	NA	NA	NA	NA
WP_076879632.1\|1099017_1099263_+	hypothetical protein	NA	NA	NA	NA
WP_005012067.1\|1099249_1100200_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_7

1145682 : 1201548

uncultured_Mediterranean_phage(25.0%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005012067.1\|1145682_1146633_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931120.1\|1146800_1148192_+	exodeoxyribonuclease VII large subunit	A0A1V0SD82	Indivirus	1.4e-29	32.0
WP_010931119.1\|1148264_1148843_+	superoxide dismutase [Fe]	NA	NA	NA	NA
WP_019247560.1\|1148959_1150357_+	chloride channel protein	NA	NA	NA	NA
WP_010931117.1\|1150472_1151678_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA
WP_003820399.1\|1151777_1152296_-	hypothetical protein	A0A1B1IUW8	uncultured_Mediterranean_phage	5.1e-14	42.2
WP_003812875.1\|1152390_1152636_-	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-20	76.6
WP_003820400.1\|1152862_1153177_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.2e-10	43.8
WP_010931116.1\|1153266_1158456_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA
WP_010931115.1\|1158452_1160621_+	penicillin-binding protein 1C	NA	NA	NA	NA
WP_023995053.1\|1160640_1162992_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	4.2e-164	41.9
WP_003820402.1\|1162996_1164316_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA
WP_014905522.1\|1164334_1166008_+	MCE family protein	NA	NA	NA	NA
WP_010931111.1\|1166012_1166681_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_010931110.1\|1166837_1170659_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_010930800.1\|1170989_1171940_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003812857.1\|1171961_1173107_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003820410.1\|1173255_1174185_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_003812851.1\|1174181_1175270_+	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_010931109.1\|1175266_1176070_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	7.9e-14	23.5
WP_003812846.1\|1176066_1176798_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.4e-12	31.0
WP_010931108.1\|1176855_1178145_-	MFS transporter	NA	NA	NA	NA
WP_010931107.1\|1178241_1178844_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_077069211.1\|1179082_1182067_+	autotransporter BapC	NA	NA	NA	NA
WP_003812839.1\|1183395_1183734_-	P-II family nitrogen regulator	NA	NA	NA	NA
WP_010931105.1\|1184441_1184708_+	accessory factor UbiK family protein	NA	NA	NA	NA
WP_010931103.1\|1187360_1188692_-	MFS transporter	NA	NA	NA	NA
WP_019247695.1\|1189931_1191953_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_003819722.1\|1191945_1192587_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA
WP_003809276.1\|1192583_1192991_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA
WP_010931101.1\|1192987_1193788_+	SURF1 family protein	NA	NA	NA	NA
WP_010931100.1\|1193862_1194567_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_010931099.1\|1194598_1195393_+	N-formylglutamate deformylase	NA	NA	NA	NA
WP_005013747.1\|1195389_1196340_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003812014.1\|1197486_1197921_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_010931098.1\|1198003_1200340_+	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	3.2e-124	42.8
WP_010930525.1\|1200531_1201548_+\|transposase	IS110-like element IS1663 family transposase	NA	NA	NA	NA

DBSCAN-SWA_8

1545264 : 1614393

Streptococcus_virus(11.11%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010930416.1\|1545264_1545753_+\|tRNA	Cys-tRNA(Pro) deacylase	NA	NA	NA	NA
WP_019248504.1\|1545870_1546449_+	DJ-1/PfpI family protein	NA	NA	NA	NA
WP_003809561.1\|1546521_1546923_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA
WP_005012067.1\|1547020_1547971_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_023994932.1\|1547977_1549090_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA
WP_010930419.1\|1549776_1550979_+	MFS transporter	NA	NA	NA	NA
WP_010930420.1\|1551182_1553843_+	hypothetical protein	NA	NA	NA	NA
WP_010930421.1\|1553855_1557260_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA
WP_023995689.1\|1557924_1560150_+	DNA polymerase III subunit gamma/tau	A0A1U9WR94	Streptococcus_virus	1.2e-43	38.5
WP_010930423.1\|1560196_1560523_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
WP_010930424.1\|1560573_1561182_+	recombination protein RecR	NA	NA	NA	NA
WP_005013747.1\|1561280_1562231_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_005013747.1\|1562329_1563280_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930425.1\|1563349_1564114_-	hypothetical protein	NA	NA	NA	NA
WP_010930426.1\|1564110_1564710_-	hypothetical protein	NA	NA	NA	NA
WP_003820094.1\|1564813_1565659_-	putative membrane protein	A0A1I9SA48	Rhodococcus_phage	7.0e-37	35.3
WP_010928449.1\|1565724_1566351_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
WP_077068977.1\|1567283_1567472_-	hypothetical protein	NA	NA	NA	NA
WP_010930428.1\|1567395_1568517_-	DUF1513 domain-containing protein	NA	NA	NA	NA
WP_019248041.1\|1568497_1569499_-	imelysin family protein	NA	NA	NA	NA
WP_019247498.1\|1569604_1571116_-	c-type cytochrome	NA	NA	NA	NA
WP_023853587.1\|1571112_1572417_-	imelysin	NA	NA	NA	NA
WP_010930431.1\|1572528_1573089_-	membrane protein	NA	NA	NA	NA
WP_010930432.1\|1573356_1573911_+	NAD(P)H-dependent oxidoreductase	A0A2P0ZL82	Lactobacillus_phage	1.7e-15	32.0
WP_010930433.1\|1574366_1574582_-	dodecin domain-containing protein	NA	NA	NA	NA
WP_033446228.1\|1574836_1577434_+	DNA mismatch repair protein MutS	A0A1V0SDQ0	Indivirus	1.5e-21	22.6
WP_010930435.1\|1577430_1578618_+	cupin	NA	NA	NA	NA
WP_019248658.1\|1579276_1579891_+	fimbrial protein	NA	NA	NA	NA
WP_010930437.1\|1579979_1581107_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA
WP_033446216.1\|1581118_1582024_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
WP_005012067.1\|1582915_1583866_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930439.1\|1584047_1584800_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA
WP_003811112.1\|1584868_1585528_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA
WP_003811113.1\|1585524_1586253_+	glutamine ABC transporter ATP-binding protein GlnQ	G9BWD6	Planktothrix_phage	3.3e-35	39.3
WP_010930440.1\|1586265_1588545_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A1B1IUF0	uncultured_Mediterranean_phage	5.9e-06	32.1
WP_010930441.1\|1588569_1588773_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA
WP_003811129.1\|1588814_1589462_-	guanylate kinase	A0A218KC48	Bacillus_phage	3.1e-13	33.9
WP_010930443.1\|1589582_1590500_-	c-type cytochrome	NA	NA	NA	NA
WP_010930444.1\|1590496_1591210_-	c-type cytochrome	NA	NA	NA	NA
WP_003811135.1\|1591447_1592218_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_003811137.1\|1592222_1592822_-	C40 family peptidase	A0A0A8WF62	Clostridium_phage	1.4e-20	41.6
WP_003811138.1\|1593066_1594557_+	AMP nucleosidase	NA	NA	NA	NA
WP_010926696.1\|1594615_1594900_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_010928840.1\|1594896_1595025_-	hypothetical protein	NA	NA	NA	NA
WP_010930445.1\|1595037_1595193_-	hypothetical protein	NA	NA	NA	NA
WP_003811148.1\|1595465_1596392_-	YicC family protein	NA	NA	NA	NA
WP_003811149.1\|1596528_1597269_+	ribonuclease PH	NA	NA	NA	NA
WP_010930446.1\|1597435_1598812_-	MmgE/PrpD family protein	NA	NA	NA	NA
WP_003811152.1\|1598993_1599899_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010930448.1\|1601550_1603353_-	EAL domain-containing protein	NA	NA	NA	NA
WP_003811159.1\|1603470_1604121_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA
WP_005012808.1\|1604219_1605170_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930450.1\|1605191_1606412_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA
WP_003811164.1\|1606597_1608010_+	type I glutamate--ammonia ligase	NA	NA	NA	NA
WP_003811167.1\|1608073_1609141_+	PAS domain-containing protein	Q8QKV7	Ectocarpus_siliculosus_virus	1.1e-05	23.5
WP_003811170.1\|1609137_1610628_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA
WP_010930452.1\|1610637_1611582_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003811176.1\|1611741_1612440_+	pirin family protein	NA	NA	NA	NA
WP_010930453.1\|1612517_1613423_+	pirin family protein	NA	NA	NA	NA
WP_005012067.1\|1613442_1614393_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_9

2026087 : 2084411

Klosneuvirus(13.33%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010930522.1\|2026087_2027038_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930804.1\|2027136_2029737_-	TRAP transporter fused permease subunit	NA	NA	NA	NA
WP_003818658.1\|2029843_2030848_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA
WP_010930803.1\|2030956_2032297_-	aspartate aminotransferase family protein	A0A1V0SKB7	Klosneuvirus	8.8e-18	22.8
WP_010930802.1\|2033560_2034106_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_010930801.1\|2034102_2034663_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA
WP_010930048.1\|2034761_2035712_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930523.1\|2035749_2036337_+	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	4.7e-16	35.8
WP_003811007.1\|2036354_2036738_-	thioredoxin family protein	V9SJ74	Achromobacter_phage	8.1e-09	25.8
WP_003811011.1\|2038097_2039390_-	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	1.7e-66	36.0
WP_010930524.1\|2039524_2040565_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	6.1e-91	51.3
WP_010929632.1\|2040661_2041678_-\|transposase	IS110-like element IS1663 family transposase	NA	NA	NA	NA
WP_003811015.1\|2041945_2042593_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_010930526.1\|2042718_2043477_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.4e-68	51.2
WP_077274094.1\|2043551_2044241_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	4.2e-32	46.9
WP_003811022.1\|2044258_2045143_+	peptidoglycan DD-metalloendopeptidase family protein	A0A292GJG6	Xanthomonas_phage	4.6e-15	49.5
WP_019248494.1\|2045139_2045919_+	3'-5' exonuclease	NA	NA	NA	NA
WP_003816527.1\|2045945_2046623_+	hypothetical protein	NA	NA	NA	NA
WP_010930529.1\|2046911_2047664_+	hypothetical protein	NA	NA	NA	NA
WP_003816525.1\|2047782_2049183_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	7.3e-31	26.5
WP_003816523.1\|2049206_2049605_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA
WP_003811035.1\|2049780_2049981_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA
WP_010930530.1\|2050119_2050848_+	redoxin family protein	A0A1D8KSL1	Synechococcus_phage	9.6e-43	56.8
WP_003816520.1\|2050981_2052397_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA
WP_003816518.1\|2052400_2053264_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA
WP_004568486.1\|2053276_2054026_-	glycerophosphodiester phosphodiesterase	A0A2H4PGQ5	Escherichia_phage	1.5e-14	27.8
WP_019247881.1\|2054208_2056224_+	peptidylprolyl isomerase	NA	NA	NA	NA
WP_029443816.1\|2056205_2056754_-	arylesterase	NA	NA	NA	NA
WP_077274081.1\|2056830_2057550_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	1.4e-22	36.6
WP_005012067.1\|2058696_2059647_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003813572.1\|2059795_2060134_-	BON domain-containing protein	NA	NA	NA	NA
WP_003813570.1\|2060191_2060353_-	DUF1328 domain-containing protein	NA	NA	NA	NA
WP_003813568.1\|2060384_2060585_-	CsbD family protein	NA	NA	NA	NA
WP_010930533.1\|2060850_2063424_-	cyanophycin synthetase	NA	NA	NA	NA
WP_010930534.1\|2063494_2066068_-	cyanophycin synthetase	NA	NA	NA	NA
WP_010930535.1\|2068594_2069083_+	DUF1854 domain-containing protein	NA	NA	NA	NA
WP_029443743.1\|2069174_2070326_-	N-acetyltransferase	NA	NA	NA	NA
WP_004566336.1\|2070379_2071201_+	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_010930537.1\|2071239_2072469_+	lytic murein transglycosylase	NA	NA	NA	NA
WP_004566334.1\|2072597_2073038_+	DUF937 domain-containing protein	NA	NA	NA	NA
WP_076879558.1\|2072982_2073162_+	hypothetical protein	NA	NA	NA	NA
WP_005012808.1\|2073148_2074099_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930538.1\|2074095_2074569_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_033446178.1\|2074730_2075669_+	membrane protein	NA	NA	NA	NA
WP_010930540.1\|2075670_2076879_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	Q9HH70	Methanothermobacter_phage	3.8e-36	30.0
WP_010930541.1\|2076983_2077490_-	lipoprotein signal peptidase	NA	NA	NA	NA
WP_010930542.1\|2077492_2080354_-\|tRNA	isoleucine--tRNA ligase	A0A1V0SJ93	Klosneuvirus	1.0e-71	25.5
WP_010930543.1\|2080343_2081309_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA
WP_076879626.1\|2081368_2083363_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	4.4e-21	33.3
WP_005012067.1\|2083460_2084411_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_10

2135656 : 2194925

Klosneuvirus(40.0%)

tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005013747.1\|2135656_2136607_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930573.1\|2136730_2137540_-	enoyl-CoA hydratase	NA	NA	NA	NA
WP_153302779.1\|2137595_2137754_+	hypothetical protein	NA	NA	NA	NA
WP_010929577.1\|2137740_2138691_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930574.1\|2139964_2141182_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA
WP_003818670.1\|2142238_2143141_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_010930576.1\|2143217_2144090_+	MOSC domain-containing protein	NA	NA	NA	NA
WP_003818672.1\|2144220_2144589_+	aspartate 1-decarboxylase	NA	NA	NA	NA
WP_010930577.1\|2144646_2145693_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
WP_010930578.1\|2145888_2147145_+	D-amino acid dehydrogenase	NA	NA	NA	NA
WP_003810623.1\|2147149_2148487_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_003818676.1\|2148636_2149593_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_019247555.1\|2149695_2150628_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA
WP_019247554.1\|2150743_2151064_+	hypothetical protein	NA	NA	NA	NA
WP_010930580.1\|2151065_2151416_+	hypothetical protein	NA	NA	NA	NA
WP_010930581.1\|2151463_2153038_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003810637.1\|2153090_2154035_+	ABC transporter permease	NA	NA	NA	NA
WP_010930582.1\|2154052_2154883_+	ABC transporter permease	NA	NA	NA	NA
WP_010930583.1\|2154875_2156510_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	8.2e-18	32.7
WP_010930584.1\|2156506_2157862_+	amidase	NA	NA	NA	NA
WP_010930585.1\|2158768_2160346_+	lipoprotein	NA	NA	NA	NA
WP_010930586.1\|2160349_2161624_+	type 4b pilus protein PilO2	NA	NA	NA	NA
WP_010930587.1\|2161721_2162096_+	hypothetical protein	NA	NA	NA	NA
WP_010930588.1\|2163811_2164945_+	general secretion pathway protein	NA	NA	NA	NA
WP_003810661.1\|2164982_2165588_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_010930589.1\|2165584_2166403_+	hypothetical protein	NA	NA	NA	NA
WP_010930590.1\|2166474_2169099_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	1.7e-81	39.4
WP_004568544.1\|2169085_2169340_+	sulfurtransferase TusA family protein	NA	NA	NA	NA
WP_010930591.1\|2169406_2169988_-	hypothetical protein	NA	NA	NA	NA
WP_010926757.1\|2170291_2170552_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_014905757.1\|2170717_2171341_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_003816734.1\|2171340_2172114_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_010930593.1\|2172110_2173319_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA
WP_010930594.1\|2173344_2173818_-	RidA family protein	NA	NA	NA	NA
WP_010930048.1\|2173891_2174842_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_076879566.1\|2174940_2175891_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930796.1\|2175989_2177339_-	two-component sensor histidine kinase	NA	NA	NA	NA
WP_023852900.1\|2178104_2178860_+	MipA/OmpV family protein	NA	NA	NA	NA
WP_010930794.1\|2178952_2181835_-\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	3.7e-138	37.1
WP_003810689.1\|2182157_2182583_+	nucleoside-diphosphate kinase	D2E8E1	Anguillid_herpesvirus	2.1e-21	43.2
WP_004568542.1\|2182610_2183759_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA
WP_003810693.1\|2183755_2184262_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_010930793.1\|2184268_2185564_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA
WP_010930792.1\|2185604_2186909_+\|tRNA	histidine--tRNA ligase	NA	NA	NA	NA
WP_010930791.1\|2186910_2187549_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_077069010.1\|2187551_2188712_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA
WP_003810703.1\|2188738_2190094_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA
WP_010930790.1\|2190097_2191168_+	histidinol-phosphate transaminase	A0A1X6WGT4	Pacmanvirus	2.5e-15	25.7
WP_003810707.1\|2191306_2191543_+	RNA chaperone Hfq	NA	NA	NA	NA
WP_010930789.1\|2191630_2192737_+	GTPase HflX	NA	NA	NA	NA
WP_010930788.1\|2192702_2194007_+\|protease	FtsH protease activity modulator HflK	NA	NA	NA	NA
WP_010930787.1\|2194025_2194925_+\|protease	protease modulator HflC	NA	NA	NA	NA

DBSCAN-SWA_11

2205164 : 2263708

Staphylococcus_phage(16.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005013747.1\|2205164_2206115_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_076879573.1\|2206101_2206302_-	hypothetical protein	NA	NA	NA	NA
WP_010930782.1\|2206314_2207400_+	AI-2E family transporter	NA	NA	NA	NA
WP_003810400.1\|2207415_2208177_-	ABC transporter permease	NA	NA	NA	NA
WP_010930781.1\|2208173_2209097_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.6e-23	33.6
WP_019248115.1\|2209195_2209720_-	N-acetyltransferase	NA	NA	NA	NA
WP_010930779.1\|2209728_2210472_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_010930778.1\|2210567_2210807_-	membrane protein	NA	NA	NA	NA
WP_010930777.1\|2210820_2210973_-	lipoprotein	NA	NA	NA	NA
WP_010930776.1\|2211058_2212549_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA
WP_010930775.1\|2212640_2213579_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA
WP_003818560.1\|2213575_2213752_-	cytochrome oxidase	NA	NA	NA	NA
WP_003810383.1\|2213754_2214417_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA
WP_003810379.1\|2216038_2216182_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA
WP_010930774.1\|2216178_2217153_-	membrane protein	NA	NA	NA	NA
WP_153302783.1\|2217189_2217333_+	hypothetical protein	NA	NA	NA	NA
WP_005012067.1\|2217319_2218270_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930773.1\|2218266_2219541_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	A0A1V0SKB7	Klosneuvirus	9.6e-14	28.9
WP_076879572.1\|2219638_2220838_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA
WP_010930771.1\|2220834_2221488_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_010930770.1\|2221484_2222921_+	dethiobiotin synthase	NA	NA	NA	NA
WP_010930769.1\|2222908_2223268_+	CidA/LrgA family protein	NA	NA	NA	NA
WP_005012067.1\|2224240_2225191_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930768.1\|2227284_2229150_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_010930767.1\|2229407_2230928_+	aldehyde dehydrogenase	NA	NA	NA	NA
WP_003816959.1\|2231015_2231666_-	flavodoxin family protein	NA	NA	NA	NA
WP_010930766.1\|2232614_2233910_+	DUF445 domain-containing protein	NA	NA	NA	NA
WP_010930765.1\|2233931_2234816_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010930764.1\|2234914_2235790_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA
WP_003816964.1\|2235779_2236136_-	DUF1428 domain-containing protein	NA	NA	NA	NA
WP_076879571.1\|2236209_2237241_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_003812228.1\|2237370_2237550_-	DUF3008 family protein	NA	NA	NA	NA
WP_029443822.1\|2237647_2238172_+	DUF302 domain-containing protein	NA	NA	NA	NA
WP_010930761.1\|2238182_2239019_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_003816971.1\|2239131_2239503_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_010930760.1\|2239499_2240051_+	SRPBCC family protein	NA	NA	NA	NA
WP_003816975.1\|2240066_2241758_-	STAS domain-containing protein	A0A2H4J153	uncultured_Caudovirales_phage	5.0e-42	27.3
WP_003816977.1\|2241806_2242487_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_014905663.1\|2242734_2243199_-	hypothetical protein	NA	NA	NA	NA
WP_010930758.1\|2243368_2244298_+	ZIP family metal transporter	NA	NA	NA	NA
WP_019247659.1\|2244310_2244958_-	hypothetical protein	NA	NA	NA	NA
WP_023997035.1\|2245031_2246849_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.3e-37	27.4
WP_005012067.1\|2246932_2247883_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010929577.1\|2248534_2249485_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003812199.1\|2249503_2249851_-	GFA family protein	NA	NA	NA	NA
WP_010930755.1\|2249879_2251319_-	MFS transporter	A0A0M3UL24	Mycobacterium_phage	7.4e-55	37.4
WP_010930754.1\|2251337_2251733_-	VOC family protein	NA	NA	NA	NA
WP_003812191.1\|2251907_2252516_+	peptidase S16	NA	NA	NA	NA
WP_010930753.1\|2252528_2253347_+	hypothetical protein	A0A1B1INV8	uncultured_Mediterranean_phage	2.3e-16	28.8
WP_010930752.1\|2253298_2254273_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_003812183.1\|2254301_2255363_-	XdhC family protein	NA	NA	NA	NA
WP_010930751.1\|2255359_2257576_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA
WP_010930750.1\|2257589_2258048_-	(2Fe-2S)-binding protein	NA	NA	NA	NA
WP_003812179.1\|2258205_2258550_-	exported protein	NA	NA	NA	NA
WP_010930749.1\|2258706_2259612_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010930748.1\|2259698_2260712_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA
WP_010930153.1\|2262691_2263708_+\|transposase	IS110-like element IS1663 family transposase	NA	NA	NA	NA

DBSCAN-SWA_12

2556161 : 2613741

Staphylococcus_phage(16.67%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_076879624.1\|2556161_2557112_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_005012067.1\|2558257_2559208_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930362.1\|2559217_2559907_-	VIT family protein	NA	NA	NA	NA
WP_003811741.1\|2559966_2560404_-	PaaI family thioesterase	NA	NA	NA	NA
WP_003811743.1\|2560449_2561343_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA
WP_003811746.1\|2561390_2562563_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_003811748.1\|2562559_2563714_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_003811750.1\|2563910_2564261_-	RnfH family protein	NA	NA	NA	NA
WP_003811752.1\|2564250_2564685_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_003811754.1\|2565798_2566266_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	6.2e-27	45.1
WP_010930360.1\|2566246_2567404_-	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	2.3e-14	36.2
WP_003811759.1\|2567469_2568396_-	paraslipin	NA	NA	NA	NA
WP_005012067.1\|2568513_2569464_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003811761.1\|2569498_2569924_-	membrane protein	NA	NA	NA	NA
WP_010930359.1\|2570047_2570767_+	glutamine amidotransferase	NA	NA	NA	NA
WP_057110967.1\|2570834_2573198_-	phosphoenolpyruvate synthase	A0A1V0SGR7	Hokovirus	2.9e-165	35.9
WP_010930357.1\|2573359_2574187_+	kinase/pyrophosphorylase	NA	NA	NA	NA
WP_003811768.1\|2574198_2574972_-	RNA methyltransferase	NA	NA	NA	NA
WP_003811770.1\|2574968_2575574_-	ribonuclease HII	G9E3X7	Emiliania_huxleyi_virus	8.8e-26	40.2
WP_010930356.1\|2575560_2576742_-	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_010930355.1\|2576738_2577533_-	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_003811776.1\|2577533_2577989_-	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_010930354.1\|2578060_2579152_-	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_003811782.1\|2579160_2579724_-	OmpH family outer membrane protein	NA	NA	NA	NA
WP_010930353.1\|2579849_2582186_-	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_010930352.1\|2582238_2583573_-\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_003811788.1\|2583612_2584812_-	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_010930351.1\|2584808_2585666_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_010926572.1\|2585685_2586579_-	di-trans,poly-cis-decaprenylcistransferase	R9W0U9	Flavobacterium_phage	2.0e-18	36.1
WP_003811796.1\|2586616_2587177_-	ribosome recycling factor	NA	NA	NA	NA
WP_010930349.1\|2587191_2587908_-	UMP kinase	NA	NA	NA	NA
WP_003811801.1\|2588005_2588935_-	elongation factor Ts	NA	NA	NA	NA
WP_003811803.1\|2589067_2589817_-	30S ribosomal protein S2	NA	NA	NA	NA
WP_003811806.1\|2590543_2591365_+	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_010930348.1\|2591394_2593992_+	[protein-PII] uridylyltransferase	NA	NA	NA	NA
WP_003811812.1\|2594795_2595272_+	disulfide bond formation protein B	NA	NA	NA	NA
WP_003811814.1\|2595315_2596836_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	4.8e-97	43.7
WP_003811815.1\|2596877_2597366_-	CvpA family protein	NA	NA	NA	NA
WP_023852965.1\|2597362_2598193_-	SPOR domain-containing protein	NA	NA	NA	NA
WP_010930346.1\|2598253_2599561_-	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA
WP_003817216.1\|2599822_2600200_+	flagellar protein FlaG	NA	NA	NA	NA
WP_010930345.1\|2600340_2601714_+	flagellar filament capping protein FliD	NA	NA	NA	NA
WP_010930344.1\|2601721_2602150_+	flagellar export chaperone FliS	NA	NA	NA	NA
WP_003811825.1\|2602167_2602548_+	flagellar protein FliT	NA	NA	NA	NA
WP_023997203.1\|2603152_2603566_+	hypothetical protein	NA	NA	NA	NA
WP_019247563.1\|2603492_2603819_+	flagellar hook-length control protein FliK	NA	NA	NA	NA
WP_010930342.1\|2603815_2604142_+	flagellar biosynthesis protein FlhB	NA	NA	NA	NA
WP_010930341.1\|2604151_2604547_+	hypothetical protein	NA	NA	NA	NA
WP_010930340.1\|2604560_2604893_-	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA
WP_010930339.1\|2605205_2606882_+	flagellar basal body M-ring protein FliF	NA	NA	NA	NA
WP_003817203.1\|2606871_2607882_+	flagellar motor switch protein FliG	NA	NA	NA	NA
WP_010930338.1\|2607874_2608630_+	flagellar assembly protein FliH	NA	NA	NA	NA
WP_019247562.1\|2608626_2610102_+	flagellar protein export ATPase FliI	NA	NA	NA	NA
WP_003811846.1\|2610094_2610541_+	flagellar export protein FliJ	NA	NA	NA	NA
WP_005012067.1\|2611741_2612692_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_005012067.1\|2612790_2613741_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_13

2905628 : 2981148

Planktothrix_phage(18.18%)

tRNA,holin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023853221.1\|2905628_2907425_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_010930196.1\|2909324_2913251_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA
WP_010930195.1\|2913541_2913718_-	hypothetical protein	NA	NA	NA	NA
WP_010930194.1\|2913985_2917216_-	autotransporter SphB3	NA	NA	NA	NA
WP_010928340.1\|2917497_2918325_-	TatD family hydrolase	NA	NA	NA	NA
WP_003812422.1\|2918358_2919054_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	G9BWD6	Planktothrix_phage	7.0e-35	38.6
WP_019247537.1\|2919046_2920327_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA
WP_010930192.1\|2920336_2921314_+	hypothetical protein	NA	NA	NA	NA
WP_010930191.1\|2921295_2922996_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	1.3e-50	28.3
WP_010926448.1\|2923098_2924202_+	peptide chain release factor 2	NA	NA	NA	NA
WP_010926447.1\|2924232_2924988_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_010930190.1\|2924994_2926515_+\|tRNA	lysine--tRNA ligase	A0A1V0SAC0	Catovirus	1.2e-82	36.0
WP_010930189.1\|2926557_2926860_+	membrane protein	NA	NA	NA	NA
WP_003812436.1\|2926856_2927489_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_010930188.1\|2927567_2929433_-	long-chain fatty acid--CoA ligase	A0A1V0SBX8	Catovirus	9.3e-50	23.3
WP_010930187.1\|2929429_2930245_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	7.5e-12	23.7
WP_010930186.1\|2930252_2931368_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010930185.1\|2932272_2933151_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_010930184.1\|2933150_2933975_-	ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	1.0e-08	22.7
WP_076879621.1\|2935274_2938154_+	EAL domain-containing protein	NA	NA	NA	NA
WP_003812697.1\|2938135_2938912_-	response regulator transcription factor	NA	NA	NA	NA
WP_019248549.1\|2939004_2940468_-	YdiU family protein	A0A075BSJ0	Microcystis_phage	1.7e-43	32.5
WP_010930180.1\|2940464_2940836_-	DUF2069 domain-containing protein	NA	NA	NA	NA
WP_003812701.1\|2940853_2942167_+	YihY family inner membrane protein	NA	NA	NA	NA
WP_003812703.1\|2942203_2942662_+	CBS domain-containing protein	NA	NA	NA	NA
WP_005012067.1\|2942774_2943725_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930178.1\|2943721_2944735_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_003812707.1\|2944874_2945861_+	homoserine kinase	NA	NA	NA	NA
WP_010930177.1\|2945904_2946705_+	hypothetical protein	NA	NA	NA	NA
WP_005012067.1\|2947507_2948458_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_023995509.1\|2948444_2948606_-	hypothetical protein	NA	NA	NA	NA
WP_003809618.1\|2948609_2949212_-	YhbY family RNA-binding protein	NA	NA	NA	NA
WP_010930175.1\|2949230_2949863_+	RlmE family RNA methyltransferase	NA	NA	NA	NA
WP_010930174.1\|2950100_2951987_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	M4QMW8	Micromonas_pusilla_virus	1.4e-109	41.5
WP_010930173.1\|2952005_2952848_+	dihydropteroate synthase	A0A0B5J4J5	Pandoravirus	3.2e-26	32.5
WP_003819875.1\|2952844_2954203_+	phosphoglucosamine mutase	NA	NA	NA	NA
WP_003809629.1\|2954423_2955218_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_010930172.1\|2955448_2956942_-	exopolyphosphatase	NA	NA	NA	NA
WP_010930171.1\|2957177_2959259_+	polyphosphate kinase 1	NA	NA	NA	NA
WP_014486066.1\|2959453_2960494_+	phosphate ABC transporter substrate-binding protein PstS	M4QHS4	Cyanophage	2.1e-51	40.2
WP_010930169.1\|2960628_2961645_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA
WP_003809638.1\|2961666_2962524_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA
WP_010930167.1\|2962568_2963345_+	phosphate ABC transporter ATP-binding protein PstB	G9BWD6	Planktothrix_phage	4.3e-17	28.7
WP_005013747.1\|2963711_2964662_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003809441.1\|2964688_2965153_-	barstar family protein	NA	NA	NA	NA
WP_014486065.1\|2966359_2968648_-	NADP-dependent malic enzyme	NA	NA	NA	NA
WP_010930165.1\|2968764_2969637_-	hypothetical protein	NA	NA	NA	NA
WP_010930164.1\|2969679_2970834_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_010930163.1\|2970868_2971699_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA
WP_023853525.1\|2971782_2973327_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA
WP_010930161.1\|2973369_2973729_-	hypothetical protein	NA	NA	NA	NA
WP_003819794.1\|2973730_2974144_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_003809432.1\|2974184_2974502_-	DUF883 domain-containing protein	NA	NA	NA	NA
WP_003809431.1\|2974586_2975303_-	hypothetical protein	NA	NA	NA	NA
WP_010930160.1\|2975566_2976988_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_010931363.1\|2980131_2981148_-\|transposase	IS110-like element IS1663 family transposase	NA	NA	NA	NA

DBSCAN-SWA_14

3059021 : 3121217

Bacillus_virus(15.38%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010929632.1\|3059021_3060038_+\|transposase	IS110-like element IS1663 family transposase	NA	NA	NA	NA
WP_010930118.1\|3060175_3061225_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA
WP_005012067.1\|3061329_3062280_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003813314.1\|3062375_3063101_-	CoA pyrophosphatase	NA	NA	NA	NA
WP_003813315.1\|3063311_3063692_-	50S ribosomal protein L19	NA	NA	NA	NA
WP_014905652.1\|3063997_3064870_+	EamA family transporter	NA	NA	NA	NA
WP_023852686.1\|3064877_3065258_-	hypothetical protein	NA	NA	NA	NA
WP_010930114.1\|3065411_3066623_-	PA0069 family radical SAM protein	NA	NA	NA	NA
WP_010930113.1\|3068172_3069081_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA
WP_010930112.1\|3069878_3070943_-	sulfate ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.8e-24	30.3
WP_003821528.1\|3072779_3073814_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003813333.1\|3074003_3074645_-	peroxiredoxin	NA	NA	NA	NA
WP_003821527.1\|3074727_3076554_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_010930111.1\|3076797_3077727_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA
WP_010930110.1\|3077726_3078476_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA
WP_003821521.1\|3078547_3079462_-	histone deacetylase family protein	A0A2K9KZC4	Tupanvirus	9.8e-45	34.7
WP_010930108.1\|3079481_3080627_+	lytic murein transglycosylase B	NA	NA	NA	NA
WP_014486062.1\|3080687_3081599_-	cysteine synthase CysM	A0A1X9I5K7	Streptococcus_phage	8.0e-47	38.8
WP_005012067.1\|3081679_3082630_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_033446303.1\|3082728_3083313_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA
WP_003821513.1\|3083347_3084337_-	ADP-glyceromanno-heptose 6-epimerase	E3SJ87	Synechococcus_phage	2.2e-26	34.4
WP_010930105.1\|3084333_3085275_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	A0A2H4N7X4	Lake_Baikal_phage	1.5e-16	28.1
WP_010930104.1\|3085271_3086492_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA
WP_010930103.1\|3086534_3086849_-	DUF1049 domain-containing protein	NA	NA	NA	NA
WP_010930102.1\|3087040_3087400_-	integration host factor subunit beta	NA	NA	NA	NA
WP_003821510.1\|3087401_3089132_-	30S ribosomal protein S1	NA	NA	NA	NA
WP_010930100.1\|3089304_3089976_-	(d)CMP kinase	NA	NA	NA	NA
WP_010930099.1\|3089990_3091319_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_010930098.1\|3091315_3092215_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA
WP_010930097.1\|3092301_3093387_-	prephenate dehydratase	NA	NA	NA	NA
WP_010930096.1\|3093379_3094513_-	3-phosphoserine/phosphohydroxythreonine transaminase	M1Q1P2	Streptococcus_phage	6.4e-78	44.0
WP_010930095.1\|3094512_3097194_-	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	3.2e-104	33.5
WP_010930094.1\|3097564_3098146_+	OmpA family protein	NA	NA	NA	NA
WP_077274086.1\|3098223_3098997_+	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA
WP_010930092.1\|3098993_3099671_+	HAD-IA family hydrolase	NA	NA	NA	NA
WP_010930091.1\|3099886_3101068_+	MFS transporter	NA	NA	NA	NA
WP_010930090.1\|3101840_3102023_+	type II toxin-antitoxin system HicA family toxin	A0A1L2JY37	Aeribacillus_phage	3.7e-12	56.1
WP_005012808.1\|3102052_3103003_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_124740670.1\|3102989_3103244_-	hypothetical protein	NA	NA	NA	NA
WP_004566317.1\|3103132_3103525_+	type II toxin-antitoxin system HicB family antitoxin	A0A0R6PJ17	Moraxella_phage	4.8e-25	45.0
WP_003821497.1\|3103801_3104713_-	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	4.4e-05	27.6
WP_010930088.1\|3104837_3105812_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_005012067.1\|3105808_3106759_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003810865.1\|3106857_3107943_-	DNA polymerase IV	NA	NA	NA	NA
WP_010930072.1\|3108040_3108451_+	PaaI family thioesterase	NA	NA	NA	NA
WP_003810859.1\|3109066_3110980_+	S9 family peptidase	NA	NA	NA	NA
WP_010930071.1\|3111115_3113728_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA
WP_019248496.1\|3113729_3114464_-	serine/threonine protein phosphatase	A0A2H4J0P0	uncultured_Caudovirales_phage	1.9e-62	49.2
WP_003810851.1\|3114627_3115809_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_003810850.1\|3115805_3116018_+	hypothetical protein	NA	NA	NA	NA
WP_010930069.1\|3116014_3116995_-	aldo/keto reductase	NA	NA	NA	NA
WP_010930068.1\|3117040_3117868_-	oxidoreductase	A0A2H4PQR8	Staphylococcus_phage	1.7e-67	47.4
WP_010930067.1\|3118014_3119832_+	ABC transporter ATP-binding protein/permease	W8CYL7	Bacillus_phage	5.7e-44	27.9
WP_003810840.1\|3119886_3120270_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA
WP_010930066.1\|3120266_3121217_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_15

3243822 : 3312442

Bacillus_virus(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005013747.1\|3243822_3244773_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010930014.1\|3244878_3245814_+	mechanosensitive ion channel family protein	NA	NA	NA	NA
WP_010930013.1\|3246013_3247708_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA
WP_010930012.1\|3247742_3248669_+	VOC family protein	NA	NA	NA	NA
WP_010930011.1\|3248737_3249835_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003818996.1\|3249853_3250717_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	9.6e-34	38.9
WP_010930010.1\|3250728_3251511_+	ABC transporter permease	NA	NA	NA	NA
WP_004566042.1\|3251507_3252626_+	DUF2817 domain-containing protein	NA	NA	NA	NA
WP_010930009.1\|3252622_3254155_+	acyl--CoA ligase	NA	NA	NA	NA
WP_003818991.1\|3254195_3255203_+	zinc-binding dehydrogenase	NA	NA	NA	NA
WP_023999677.1\|3255347_3256070_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_010930007.1\|3256085_3257108_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_010930006.1\|3257424_3258159_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_010930005.1\|3258243_3259989_+	acetolactate synthase	NA	NA	NA	NA
WP_010930004.1\|3259985_3260738_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_010930003.1\|3260782_3261739_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_003818983.1\|3261827_3262394_+	membrane protein	NA	NA	NA	NA
WP_010930002.1\|3262401_3263262_-	D-amino acid aminotransferase	NA	NA	NA	NA
WP_010930001.1\|3263291_3264035_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.5e-32	42.4
WP_003807497.1\|3264051_3264735_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_010930000.1\|3265572_3266487_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010929999.1\|3266551_3267460_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010929998.1\|3267550_3268975_-	TolC family protein	NA	NA	NA	NA
WP_010929997.1\|3268976_3270299_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA
WP_010929996.1\|3270295_3272434_-	cyclolysin T1SS permease/ATPase CyaB	W8CYL7	Bacillus_phage	2.7e-45	29.2
WP_010929995.1\|3272511_3277632_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA
WP_010929994.1\|3278110_3278668_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA
WP_010929993.1\|3278683_3280165_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_023853308.1\|3280219_3282073_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_010929992.1\|3282335_3283673_-	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_010929991.1\|3283707_3285705_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA
WP_010929990.1\|3285722_3287771_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA
WP_010929989.1\|3287901_3288768_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010929988.1\|3289036_3290002_-	octaprenyl diphosphate synthase	NA	NA	NA	NA
WP_010929987.1\|3290116_3291265_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA
WP_003807462.1\|3291689_3292001_+	50S ribosomal protein L21	NA	NA	NA	NA
WP_003807460.1\|3292034_3292295_+	50S ribosomal protein L27	NA	NA	NA	NA
WP_003807459.1\|3292444_3293578_+	GTPase ObgE	NA	NA	NA	NA
WP_003807457.1\|3293648_3294785_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	5.8e-63	44.8
WP_010925762.1\|3294950_3295745_-	response regulator transcription factor	NA	NA	NA	NA
WP_003807452.1\|3295807_3296251_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_077068980.1\|3297302_3297491_-	hypothetical protein	NA	NA	NA	NA
WP_020699729.1\|3297438_3297846_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_094145978.1\|3297914_3300113_+	DUF1156 domain-containing protein	NA	NA	NA	NA
WP_005013747.1\|3300333_3301284_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_005012067.1\|3301382_3302333_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_023852739.1\|3302292_3302817_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_003814467.1\|3302948_3303920_+	FecR family protein	NA	NA	NA	NA
WP_010929983.1\|3304039_3306484_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_010929982.1\|3306499_3307090_-	polyisoprenoid-binding protein	NA	NA	NA	NA
WP_010929591.1\|3307333_3308284_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003814462.1\|3308440_3309706_-	saccharopine dehydrogenase family protein	NA	NA	NA	NA
WP_003814461.1\|3309739_3310837_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA
WP_005013747.1\|3311491_3312442_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_16

3323729 : 3424883

108

uncultured_Caudovirales_phage(13.79%)

protease,terminase,transposase,tail,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005012067.1\|3323729_3324680_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_005012067.1\|3324778_3325729_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_003814437.1\|3326460_3326838_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA
WP_003814436.1\|3326822_3327524_-	membrane protein	NA	NA	NA	NA
WP_010931409.1\|3327667_3328360_-	nucleotidyltransferase family protein	NA	NA	NA	NA
WP_010931410.1\|3328359_3329463_-	phosphotransferase	NA	NA	NA	NA
WP_010931411.1\|3329572_3331945_+	LPS-assembly protein LptD	NA	NA	NA	NA
WP_010931412.1\|3331941_3333501_+	chaperone SurA	NA	NA	NA	NA
WP_010931413.1\|3333525_3334323_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_010931414.1\|3334354_3335500_-	glycerate kinase	W6LM47	Streptococcus_phage	1.7e-41	42.2
WP_003814419.1\|3335604_3337047_+	pyruvate kinase	NA	NA	NA	NA
WP_003814416.1\|3337049_3338138_-	spore maturation protein	NA	NA	NA	NA
WP_005012808.1\|3340416_3341367_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_076879618.1\|3341353_3341572_-	hypothetical protein	NA	NA	NA	NA
WP_019247922.1\|3342496_3343054_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_019247923.1\|3343029_3343380_-	hypothetical protein	NA	NA	NA	NA
WP_003814657.1\|3343548_3344343_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.4e-15	30.6
WP_010931416.1\|3344339_3345389_-	iron ABC transporter permease	NA	NA	NA	NA
WP_003814652.1\|3345388_3346078_-	tol-pal system protein YbgF	NA	NA	NA	NA
WP_003814650.1\|3346164_3346662_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA
WP_010931417.1\|3346693_3348010_-	Tol-Pal system protein TolB	NA	NA	NA	NA
WP_003814643.1\|3349036_3349495_-	protein TolR	NA	NA	NA	NA
WP_003814641.1\|3349494_3350175_-	protein TolQ	NA	NA	NA	NA
WP_010931419.1\|3350177_3350606_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA
WP_003814636.1\|3350658_3352389_-\|tRNA	proline--tRNA ligase	A0A2K9L3R9	Tupanvirus	4.6e-11	29.4
WP_003814635.1\|3352454_3353027_+	RNA pyrophosphohydrolase	NA	NA	NA	NA
WP_010931420.1\|3353007_3353694_+	response regulator	NA	NA	NA	NA
WP_010931421.1\|3354049_3354721_+	SOS response-associated peptidase	Q5QF62	Pseudomonas_virus	4.7e-36	39.9
WP_010926433.1\|3355270_3355552_+	hypothetical protein	NA	NA	NA	NA
WP_076879540.1\|3355548_3356082_-	DUF2514 family protein	NA	NA	NA	NA
WP_010931424.1\|3356063_3356615_-	lysozyme	NA	NA	NA	NA
WP_010931425.1\|3356593_3356836_-	hypothetical protein	NA	NA	NA	NA
WP_010931426.1\|3356840_3357653_-	hypothetical protein	NA	NA	NA	NA
WP_010926428.1\|3357652_3357916_-	hypothetical protein	NA	NA	NA	NA
WP_124740660.1\|3357956_3358154_-	hypothetical protein	NA	NA	NA	NA
WP_010931428.1\|3358134_3358551_-	hypothetical protein	NA	NA	NA	NA
WP_010931429.1\|3358555_3362512_-	DUF1983 domain-containing protein	A0A0B5A1N2	Achromobacter_phage	3.9e-215	40.8
WP_010931430.1\|3362504_3362894_-	C40 family peptidase	A0A0G3EYJ9	Achromobacter_phage	3.0e-35	50.0
WP_010931431.1\|3362890_3363424_-	DUF1833 family protein	A5A3Q9	Burkholderia_phage	1.1e-40	46.9
WP_010931432.1\|3363491_3363851_-	hypothetical protein	NA	NA	NA	NA
WP_010931433.1\|3363860_3366473_-\|tail	phage tail tape measure protein	A0A2H4J107	uncultured_Caudovirales_phage	4.9e-105	38.6
WP_010931434.1\|3366498_3366789_-	DUF1799 domain-containing protein	A0A2H4JBP7	uncultured_Caudovirales_phage	3.7e-14	45.2
WP_003813412.1\|3366806_3367136_-	hypothetical protein	A0A2H4J121	uncultured_Caudovirales_phage	2.9e-15	44.0
WP_010931435.1\|3367145_3367664_-	hypothetical protein	A0A1S5R1H0	Pseudomonas_phage	5.4e-24	38.3
WP_010931436.1\|3367918_3368419_-	HNH endonuclease	A0A1I9SEX5	Klebsiella_phage	4.4e-31	45.1
WP_010931437.1\|3368426_3368849_-	DUF4128 domain-containing protein	NA	NA	NA	NA
WP_010931438.1\|3368845_3369244_-	hypothetical protein	I6PCW1	Cronobacter_phage	4.2e-16	38.0
WP_010931439.1\|3369240_3369636_-	hypothetical protein	A0A2D2W284	Stenotrophomonas_phage	7.8e-07	35.0
WP_010931440.1\|3369635_3369836_-	hypothetical protein	NA	NA	NA	NA
WP_019247789.1\|3369837_3370320_-	hypothetical protein	A0A2H4JE38	uncultured_Caudovirales_phage	1.8e-13	37.1
WP_010931442.1\|3370382_3370634_-	hypothetical protein	NA	NA	NA	NA
WP_023853024.1\|3370643_3371291_-	hypothetical protein	R9TJ64	Synechococcus_phage	2.7e-65	71.1
WP_010931443.1\|3372685_3373288_-	hypothetical protein	R9TF81	Synechococcus_phage	7.9e-27	43.6
WP_010931444.1\|3373410_3373653_-	hypothetical protein	A0A0H5AUE5	Pseudomonas_phage	5.6e-16	53.2
WP_010931445.1\|3373658_3374714_-	hypothetical protein	A0A0H5BBX3	Pseudomonas_phage	2.6e-97	50.6
WP_010931446.1\|3374742_3376161_-	DUF4055 domain-containing protein	R9TF43	Synechococcus_phage	2.2e-99	42.1
WP_010931447.1\|3376163_3377441_-\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	2.4e-150	64.7
WP_010931448.1\|3377427_3377877_-\|terminase	terminase	C7U0W1	Enterobacteria_phage	5.2e-39	61.5
WP_005012067.1\|3378552_3379503_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_023853183.1\|3379520_3379742_+	hypothetical protein	NA	NA	NA	NA
WP_010931449.1\|3379756_3380455_+	membrane protein	NA	NA	NA	NA
WP_010931450.1\|3380447_3380768_+	hypothetical protein	NA	NA	NA	NA
WP_010931451.1\|3381247_3381859_+	S24 family peptidase	NA	NA	NA	NA
WP_010931452.1\|3381924_3382137_+	hypothetical protein	NA	NA	NA	NA
WP_005012067.1\|3382388_3383339_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_019248926.1\|3383437_3384511_-	hypothetical protein	NA	NA	NA	NA
WP_010931475.1\|3384678_3385473_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010925795.1\|3385512_3386037_-	DUF934 domain-containing protein	NA	NA	NA	NA
WP_010931474.1\|3386029_3387772_-	nitrite/sulfite reductase	NA	NA	NA	NA
WP_010931473.1\|3387980_3388739_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	4.4e-14	24.4
WP_010931472.1\|3388741_3389449_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	8.2e-07	25.4
WP_010931471.1\|3389465_3390347_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_019247734.1\|3390357_3391116_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_019248554.1\|3391084_3391840_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010931468.1\|3391909_3393328_+	amidase	NA	NA	NA	NA
WP_003819076.1\|3393349_3394000_-	carbonic anhydrase	NA	NA	NA	NA
WP_033446132.1\|3394133_3394469_-	ASCH domain-containing protein	NA	NA	NA	NA
WP_010931467.1\|3395582_3397403_+	DNA helicase RecQ	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	3.1e-74	35.3
WP_010931466.1\|3397407_3398481_-	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	2.3e-08	25.7
WP_003814230.1\|3398603_3399572_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA
WP_010927008.1\|3399645_3400557_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA
WP_003814226.1\|3400575_3401148_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_010931465.1\|3401228_3401777_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA
WP_010931464.1\|3401776_3403366_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	8.7e-65	47.2
WP_003814221.1\|3403435_3403675_-	DNA-binding protein	NA	NA	NA	NA
WP_003814219.1\|3403715_3404747_-\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
WP_003814217.1\|3404806_3405988_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA
WP_010931463.1\|3406084_3406537_+	membrane protein	NA	NA	NA	NA
WP_010931462.1\|3406546_3407887_-	M24 family metallopeptidase	NA	NA	NA	NA
WP_010931461.1\|3408203_3409241_+	sodium:calcium antiporter	NA	NA	NA	NA
WP_003814209.1\|3409622_3409982_+	hypothetical protein	NA	NA	NA	NA
WP_041166340.1\|3410065_3411007_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_076879617.1\|3411081_3412032_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_003814206.1\|3412325_3413420_+	porin	NA	NA	NA	NA
WP_003814205.1\|3413501_3414383_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA
WP_003814203.1\|3414404_3415244_-	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	1.1e-66	48.9
WP_010931459.1\|3415319_3416837_+\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_010931458.1\|3416933_3418034_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_010931457.1\|3418050_3418473_-	hypothetical protein	NA	NA	NA	NA
WP_003814195.1\|3418495_3418708_-	zinc-finger domain-containing protein	NA	NA	NA	NA
WP_010931456.1\|3418754_3419675_-	branched-chain amino acid transaminase	NA	NA	NA	NA
WP_003814191.1\|3419938_3420607_+	AzlC family ABC transporter permease	NA	NA	NA	NA
WP_003814188.1\|3420609_3420939_+	AzlD domain-containing protein	NA	NA	NA	NA
WP_010931454.1\|3421143_3422577_+	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.5e-52	34.4
WP_003814185.1\|3422588_3422972_-	thioredoxin family protein	NA	NA	NA	NA
WP_010931453.1\|3423033_3423834_+	EI24 domain-containing protein	NA	NA	NA	NA
WP_154219861.1\|3423781_3423946_+	hypothetical protein	NA	NA	NA	NA
WP_005015810.1\|3423932_3424883_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_17

4013653 : 4078564

Planktothrix_phage(40.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039249574.1\|4013653_4014139_+\|transposase	transposase	NA	NA	NA	NA
WP_153302797.1\|4014227_4014365_-	hypothetical protein	NA	NA	NA	NA
WP_010931647.1\|4014357_4015338_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_019248461.1\|4015604_4016414_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA
WP_014906114.1\|4016453_4017134_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA
WP_010929491.1\|4017127_4017586_+	pertussis toxin subunit 4	NA	NA	NA	NA
WP_023853616.1\|4017597_4017960_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA
WP_010931651.1\|4018042_4018726_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA
WP_010929493.1\|4018781_4019090_+	type IV secretion system protein PtlA	NA	NA	NA	NA
WP_010929494.1\|4019108_4019423_+	type IV secretion system protein PtlB	NA	NA	NA	NA
WP_010931652.1\|4019419_4021894_+	type IV secretion system protein PtlC	NA	NA	NA	NA
WP_010931653.1\|4021901_4023293_+	type IV secretion system protein PtlD	NA	NA	NA	NA
WP_010929497.1\|4023289_4023475_+	type IV secretion system protein PtlI	NA	NA	NA	NA
WP_010929498.1\|4023453_4024155_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA
WP_010931654.1\|4024151_4024973_+	type IV secretion system protein PtlF	NA	NA	NA	NA
WP_010931655.1\|4024953_4026078_+	type IV secretion system protein PtlG	NA	NA	NA	NA
WP_010929500.1\|4026070_4027090_+	type IV secretion system protein PtlH	NA	NA	NA	NA
WP_024000452.1\|4027295_4028330_-	DMT family transporter	NA	NA	NA	NA
WP_010929501.1\|4028430_4029222_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003815873.1\|4029304_4029679_+	DUF1232 domain-containing protein	NA	NA	NA	NA
WP_010931658.1\|4029656_4031066_+	DUF2868 domain-containing protein	NA	NA	NA	NA
WP_003815876.1\|4031058_4032441_+	GTPase/DUF3482 domain-containing protein	A0A0R6PHS5	Moraxella_phage	9.9e-57	38.9
WP_003815878.1\|4032775_4034380_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_077274089.1\|4034415_4035429_+	ABC transporter permease	NA	NA	NA	NA
WP_010931660.1\|4035439_4036366_+	ABC transporter permease	NA	NA	NA	NA
WP_010931661.1\|4036756_4037707_-\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010931662.1\|4037876_4039103_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA
WP_010931663.1\|4039302_4040169_+	ATP-binding protein	NA	NA	NA	NA
WP_003815027.1\|4040161_4041124_+	Nudix family hydrolase	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	1.9e-06	53.4
WP_010927663.1\|4041224_4042175_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_005012067.1\|4042273_4043224_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_010929577.1\|4043322_4044273_+\|transposase	IS481-like element IS481 family transposase	NA	NA	NA	NA
WP_023994937.1\|4044269_4045763_-	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_003815032.1\|4045759_4048867_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA
WP_010931665.1\|4048863_4051932_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA
WP_010931666.1\|4051928_4053179_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_003815038.1\|4053359_4054121_-	cell division protein ZapD	NA	NA	NA	NA
WP_019247320.1\|4054153_4054804_-	dephospho-CoA kinase	NA	NA	NA	NA
WP_003820519.1\|4054806_4055646_-	prepilin peptidase	NA	NA	NA	NA
WP_003815047.1\|4055886_4056630_+	hypothetical protein	NA	NA	NA	NA
WP_003815049.1\|4056712_4057060_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003815051.1\|4057157_4058000_-	pantoate--beta-alanine ligase	NA	NA	NA	NA
WP_003815053.1\|4058044_4058932_-	segregation/condensation protein A	NA	NA	NA	NA
WP_003815055.1\|4058958_4059147_-	DUF3460 family protein	NA	NA	NA	NA
WP_010931669.1\|4059244_4060702_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_010931670.1\|4060688_4062215_+	glycerol kinase GlpK	NA	NA	NA	NA
WP_003815061.1\|4062233_4062701_-	membrane protein	NA	NA	NA	NA
WP_010931671.1\|4062700_4063723_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_003815064.1\|4063843_4064584_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.4e-35	39.7
WP_003815066.1\|4064638_4065739_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_003815068.1\|4065740_4066931_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_003815070.1\|4067050_4068067_-	amino acid ABC transporter substrate-binding protein	A0A1B1IT51	uncultured_Mediterranean_phage	1.0e-71	42.1
WP_003815073.1\|4068385_4069057_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	9.5e-29	38.2
WP_010927126.1\|4069053_4069962_+	FtsX-like permease family protein	NA	NA	NA	NA
WP_010931672.1\|4070173_4070821_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA
WP_010931673.1\|4074672_4075749_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_003815084.1\|4075759_4076569_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_003815086.1\|4076658_4077432_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_023853639.1\|4077613_4078564_+\|transposase	IS481 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP021403

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection