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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP022574 Klebsiella pneumoniae strain BIC-1 plasmid pBIC-1a, complete sequence 0 crisprs RT,csa3 0 0 5 0
NZ_CP022576 Klebsiella pneumoniae strain BIC-1 plasmid pBIC-1c, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP022573 Klebsiella pneumoniae strain BIC-1 chromosome, complete genome 2 crisprs RT,csa3,cas3,DinG,WYL,DEDDh 0 1 10 0
NZ_CP022575 Klebsiella pneumoniae strain BIC-1 plasmid pBIC-1b, complete sequence 0 crisprs NA 0 0 1 0

Results visualization

1. NZ_CP022574
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 17350 10 Salmonella_phage(28.57%) integrase,transposase attL 15211:15224|attR 17673:17686
DBSCAN-SWA_2 23160 : 27674 7 Wolbachia_phage(33.33%) NA NA
DBSCAN-SWA_3 62503 : 66106 7 Cronobacter_phage(25.0%) NA NA
DBSCAN-SWA_4 71526 : 75811 4 Emiliania_huxleyi_virus(33.33%) NA NA
DBSCAN-SWA_5 78947 : 170202 78 uncultured_Caudovirales_phage(15.62%) protease,integrase,transposase attL 75335:75351|attR 106395:106411
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP022573
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022573_1 1351214-1351309 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022573_2 1835168-1835262 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP022573_1 1.1|1351244|36|NZ_CP022573|CRISPRCasFinder 1351244-1351279 36 MK448233 Klebsiella phage ST11-VIM1phi8.1, complete genome 8447-8482 0 1.0
NZ_CP022573_1 1.1|1351244|36|NZ_CP022573|CRISPRCasFinder 1351244-1351279 36 MK448235 Klebsiella phage ST512-KPC3phi13.1, complete genome 8447-8482 0 1.0
NZ_CP022573_1 1.1|1351244|36|NZ_CP022573|CRISPRCasFinder 1351244-1351279 36 MK448231 Klebsiella phage ST101-KPC2phi6.1, complete genome 11383-11418 0 1.0

1. spacer 1.1|1351244|36|NZ_CP022573|CRISPRCasFinder matches to MK448233 (Klebsiella phage ST11-VIM1phi8.1, complete genome) position: , mismatch: 0, identity: 1.0

cctcgccggtacgcagcgtggttactgggtttgcgt	CRISPR spacer
cctcgccggtacgcagcgtggttactgggtttgcgt	Protospacer
************************************

2. spacer 1.1|1351244|36|NZ_CP022573|CRISPRCasFinder matches to MK448235 (Klebsiella phage ST512-KPC3phi13.1, complete genome) position: , mismatch: 0, identity: 1.0

cctcgccggtacgcagcgtggttactgggtttgcgt	CRISPR spacer
cctcgccggtacgcagcgtggttactgggtttgcgt	Protospacer
************************************

3. spacer 1.1|1351244|36|NZ_CP022573|CRISPRCasFinder matches to MK448231 (Klebsiella phage ST101-KPC2phi6.1, complete genome) position: , mismatch: 0, identity: 1.0

cctcgccggtacgcagcgtggttactgggtttgcgt	CRISPR spacer
cctcgccggtacgcagcgtggttactgggtttgcgt	Protospacer
************************************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 30299 : 41186 9 Escherichia_phage(87.5%) NA NA
DBSCAN-SWA_2 268682 : 308454 57 uncultured_Caudovirales_phage(35.42%) terminase,transposase,integrase attL 299567:299581|attR 305576:305590
DBSCAN-SWA_3 341387 : 401504 69 Enterobacteria_phage(20.0%) integrase,terminase,tail,transposase,holin attL 341169:341184|attR 398810:398825
DBSCAN-SWA_4 777798 : 870749 93 Salmonella_phage(56.9%) integrase,tRNA,head,capsid,terminase,tail,protease,plate,portal,lysis attL 833324:833342|attR 870824:870842
DBSCAN-SWA_5 1317059 : 1362334 63 Escherichia_phage(26.42%) tRNA,head,lysis,integrase attL 1310272:1310318|attR 1359406:1359452
DBSCAN-SWA_6 1571871 : 1583525 13 Enterobacteria_phage(70.0%) integrase attL 1572321:1572335|attR 1595378:1595392
DBSCAN-SWA_7 3129087 : 3162344 33 uncultured_Caudovirales_phage(73.33%) integrase,tRNA,head,capsid,terminase,tail,protease,portal attL 3146694:3146711|attR 3162689:3162706
DBSCAN-SWA_8 4025672 : 4079137 63 Salmonella_phage(38.78%) integrase,tRNA,capsid,terminase,tail,holin attL 4009790:4009806|attR 4065835:4065851
DBSCAN-SWA_9 4407861 : 4414768 6 Planktothrix_phage(33.33%) tRNA NA
DBSCAN-SWA_10 4703274 : 4759915 51 Staphylococcus_phage(15.38%) plate,transposase,protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_CP022575
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 25389 : 35687 8 Escherichia_phage(50.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage