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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP017703 Aeribacillus pallidus strain KCTC3564, complete genome 13 crisprs WYL,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,cas14j,RT,csa3,DEDDh,cas14k,PrimPol,DinG 2 38 24 0

Results visualization

1. NZ_CP017703
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017703_1 265417-272415 TypeI NA
105 spacers
cas2,cas1,cas4,cas7,cas8c,cas5,cas3,WYL

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017703_2 546267-546757 Orphan NA
7 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017703_3 789434-789523 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017703_4 2046012-2046105 TypeV NA
1 spacers
cas14j

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017703_5 2422547-2422647 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017703_6 2855644-2855740 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017703_7 3112469-3113237 Orphan NA
11 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017703_8 3215383-3215880 Orphan NA
7 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017703_9 3244897-3245326 Orphan NA
6 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017703_10 3252389-3252741 Orphan NA
5 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017703_11 3278519-3279144 Orphan NA
9 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017703_12 3463848-3463942 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017703_13 3707800-3707874 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP017703_11 11.1|3278547|37|NZ_CP017703|CRT 3278547-3278583 37 NZ_CP017703.1 3252354-3252390 1 0.973
NZ_CP017703_11 11.10|3278546|41|NZ_CP017703|CRISPRCasFinder 3278546-3278586 41 NZ_CP017703.1 3252353-3252393 1 0.976

1. spacer 11.1|3278547|37|NZ_CP017703|CRT matches to position: 3252354-3252390, mismatch: 1, identity: 0.973

atatttttggcggaaatttcgccatccacaacagggc	CRISPR spacer
atatttttggcggaaattacgccatccacaacagggc	Protospacer
****************** ******************

2. spacer 11.10|3278546|41|NZ_CP017703|CRISPRCasFinder matches to position: 3252353-3252393, mismatch: 1, identity: 0.976

catatttttggcggaaatttcgccatccacaacagggcttc	CRISPR spacer
catatttttggcggaaattacgccatccacaacagggcttc	Protospacer
******************* *********************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP017703_1 1.41|268102|35|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 268102-268136 35 NC_048651 Aeribacillus phage AP45, complete genome 6145-6179 0 1.0
NZ_CP017703_1 1.44|268302|37|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 268302-268338 37 MG969427 Anoxybacillus phage A403, complete genome 31129-31165 0 1.0
NZ_CP017703_1 1.50|268704|35|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 268704-268738 35 MG969427 Anoxybacillus phage A403, complete genome 27772-27806 0 1.0
NZ_CP017703_1 1.52|268838|33|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 268838-268870 33 NC_048651 Aeribacillus phage AP45, complete genome 14362-14394 0 1.0
NZ_CP017703_1 1.68|269900|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 269900-269933 34 NC_048651 Aeribacillus phage AP45, complete genome 16171-16204 0 1.0
NZ_CP017703_1 1.84|270961|35|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 270961-270995 35 NC_048651 Aeribacillus phage AP45, complete genome 6145-6179 0 1.0
NZ_CP017703_1 1.97|271823|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 271823-271856 34 MG969427 Anoxybacillus phage A403, complete genome 31431-31464 0 1.0
NZ_CP017703_1 1.97|271823|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 271823-271856 34 NC_048651 Aeribacillus phage AP45, complete genome 6613-6646 0 1.0
NZ_CP017703_1 1.103|272219|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 272219-272252 34 MG969427 Anoxybacillus phage A403, complete genome 31431-31464 0 1.0
NZ_CP017703_1 1.103|272219|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 272219-272252 34 NC_048651 Aeribacillus phage AP45, complete genome 6613-6646 0 1.0
NZ_CP017703_6 6.1|2855677|31|NZ_CP017703|CRISPRCasFinder 2855677-2855707 31 MG969427 Anoxybacillus phage A403, complete genome 37328-37358 0 1.0
NZ_CP017703_8 8.6|3215748|37|NZ_CP017703|CRISPRCasFinder,CRT,PILER-CR 3215748-3215784 37 MG969427 Anoxybacillus phage A403, complete genome 26558-26594 0 1.0
NZ_CP017703_1 1.44|268302|37|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 268302-268338 37 NC_048651 Aeribacillus phage AP45, complete genome 6912-6948 1 0.973
NZ_CP017703_1 1.67|269833|35|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 269833-269867 35 NC_019544 Deep-sea thermophilic phage D6E, complete genome 43769-43803 1 0.971
NZ_CP017703_2 2.4|546492|36|NZ_CP017703|CRISPRCasFinder,CRT 546492-546527 36 NC_029073 Geobacillus virus E3, complete genome 138440-138475 1 0.972
NZ_CP017703_1 1.45|268371|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 268371-268404 34 NZ_CP015358 Bacillus thuringiensis strain MYBT18246 plasmid p46701, complete sequence 15058-15091 2 0.941
NZ_CP017703_1 1.83|270895|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 270895-270928 34 MG969427 Anoxybacillus phage A403, complete genome 26914-26947 2 0.941
NZ_CP017703_10 10.1|3252419|35|NZ_CP017703|CRISPRCasFinder,CRT 3252419-3252453 35 MG969427 Anoxybacillus phage A403, complete genome 27070-27104 2 0.943
NZ_CP017703_10 10.6|3252421|35|NZ_CP017703|PILER-CR 3252421-3252455 35 MG969427 Anoxybacillus phage A403, complete genome 27070-27104 2 0.943
NZ_CP017703_7 7.7|3112902|38|NZ_CP017703|CRISPRCasFinder,CRT,PILER-CR 3112902-3112939 38 MG969427 Anoxybacillus phage A403, complete genome 37021-37058 3 0.921
NZ_CP017703_7 7.8|3112970|38|NZ_CP017703|CRISPRCasFinder,CRT,PILER-CR 3112970-3113007 38 MG969427 Anoxybacillus phage A403, complete genome 37021-37058 3 0.921
NZ_CP017703_1 1.45|268371|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 268371-268404 34 GU233956 Bacillus phage 11143, partial sequence 20078-20111 4 0.882
NZ_CP017703_1 1.28|267238|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 267238-267271 34 NC_019544 Deep-sea thermophilic phage D6E, complete genome 43808-43841 5 0.853
NZ_CP017703_10 10.2|3252484|29|NZ_CP017703|CRISPRCasFinder,CRT 3252484-3252512 29 NZ_CP026605 Catenovulum sp. CCB-QB4 plasmid unnamed1, complete sequence 189057-189085 6 0.793
NZ_CP017703_10 10.7|3252486|29|NZ_CP017703|PILER-CR 3252486-3252514 29 NZ_CP026605 Catenovulum sp. CCB-QB4 plasmid unnamed1, complete sequence 189057-189085 6 0.793
NZ_CP017703_1 1.2|265518|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 265518-265551 34 NC_004957 Lactobacillus sp. PC121B plasmid p121BS, complete sequence 850-883 7 0.794
NZ_CP017703_1 1.47|268504|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 268504-268537 34 MG945719 UNVERIFIED: Microviridae sp. isolate 2075-1801, complete genome 4647-4680 7 0.794
NZ_CP017703_1 1.62|269500|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 269500-269533 34 NZ_CP009595 Bacillus cereus strain 3a plasmid pBFC_3, complete sequence 195555-195588 7 0.794
NZ_CP017703_1 1.62|269500|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 269500-269533 34 NZ_CP009606 Bacillus cereus strain S2-8 plasmid pBFR_2, complete sequence 61790-61823 7 0.794
NZ_CP017703_1 1.62|269500|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 269500-269533 34 NZ_CP053994 Bacillus cereus strain FDAARGOS_780 plasmid unnamed1, complete sequence 135561-135594 7 0.794
NZ_CP017703_1 1.62|269500|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 269500-269533 34 NZ_CP042875 Bacillus cereus strain 09 plasmid unnamed1, complete sequence 121950-121983 7 0.794
NZ_CP017703_1 1.62|269500|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 269500-269533 34 NZ_CP053992 Bacillus cereus strain FDAARGOS_781 plasmid unnamed2, complete sequence 118577-118610 7 0.794
NZ_CP017703_1 1.62|269500|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 269500-269533 34 NZ_CP009636 Bacillus cereus 03BB108 plasmid pBFI_2, complete sequence 210050-210083 7 0.794
NZ_CP017703_1 1.62|269500|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 269500-269533 34 NZ_CP053962 Bacillus cereus strain FDAARGOS_802 plasmid unnamed2, complete sequence 35493-35526 7 0.794
NZ_CP017703_2 2.3|546427|35|NZ_CP017703|CRISPRCasFinder,CRT 546427-546461 35 GU949551 Clostridium phage phiCD6356, complete genome 4577-4611 7 0.8
NZ_CP017703_2 2.6|546623|35|NZ_CP017703|CRISPRCasFinder,CRT 546623-546657 35 GU949551 Clostridium phage phiCD6356, complete genome 4577-4611 7 0.8
NZ_CP017703_5 5.1|2422580|35|NZ_CP017703|CRISPRCasFinder 2422580-2422614 35 KP399677 Listeria phage vB_LmoS_188, complete genome 1123-1157 7 0.8
NZ_CP017703_5 5.1|2422580|35|NZ_CP017703|CRISPRCasFinder 2422580-2422614 35 DQ003642 Listeria phage A006, complete genome 1126-1160 7 0.8
NZ_CP017703_1 1.2|265518|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 265518-265551 34 MT774394 CrAssphage cr271_1, complete genome 75089-75122 8 0.765
NZ_CP017703_1 1.5|265716|35|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 265716-265750 35 MG969427 Anoxybacillus phage A403, complete genome 25999-26033 8 0.771
NZ_CP017703_1 1.43|268236|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 268236-268269 34 MG592459 Vibrio phage 1.084.O._10N.261.49.F5, partial genome 140886-140919 8 0.765
NZ_CP017703_1 1.56|269102|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 269102-269135 34 KJ019094 Synechococcus phage ACG-2014e isolate Syn7803US33, complete genome 170826-170859 8 0.765
NZ_CP017703_1 1.56|269102|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 269102-269135 34 KJ019156 Synechococcus phage ACG-2014e isolate Syn7803C2, complete genome 170917-170950 8 0.765
NZ_CP017703_1 1.56|269102|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 269102-269135 34 KJ019054 Synechococcus phage ACG-2014e isolate Syn7803C85, complete genome 170917-170950 8 0.765
NZ_CP017703_10 10.3|3252543|37|NZ_CP017703|CRISPRCasFinder,CRT 3252543-3252579 37 NZ_LR135299 Enterococcus faecium isolate E7429 plasmid 3 47155-47191 8 0.784
NZ_CP017703_10 10.3|3252543|37|NZ_CP017703|CRISPRCasFinder,CRT 3252543-3252579 37 NZ_KY290886 Enterococcus faecalis strain Transconjugant T4 plasmid pJH-T4, complete sequence 51060-51096 8 0.784
NZ_CP017703_10 10.3|3252543|37|NZ_CP017703|CRISPRCasFinder,CRT 3252543-3252579 37 NZ_CP014451 Enterococcus faecium strain ATCC 700221 plasmid unnamed2, complete sequence 55368-55404 8 0.784
NZ_CP017703_10 10.3|3252543|37|NZ_CP017703|CRISPRCasFinder,CRT 3252543-3252579 37 NZ_LR135341 Enterococcus faecium isolate E7356 plasmid 3 25297-25333 8 0.784
NZ_CP017703_10 10.3|3252543|37|NZ_CP017703|CRISPRCasFinder,CRT 3252543-3252579 37 NZ_CP027515 Enterococcus faecium strain AUSMDU00004028 plasmid unnamed3, complete sequence 7925-7961 8 0.784
NZ_CP017703_10 10.3|3252543|37|NZ_CP017703|CRISPRCasFinder,CRT 3252543-3252579 37 NC_011364 Enterococcus faecium plasmid pMG1, complete sequence 22412-22448 8 0.784
NZ_CP017703_10 10.3|3252543|37|NZ_CP017703|CRISPRCasFinder,CRT 3252543-3252579 37 NZ_CP014535 Enterococcus faecium strain E745 plasmid pl6, complete sequence 21175-21211 8 0.784
NZ_CP017703_10 10.3|3252543|37|NZ_CP017703|CRISPRCasFinder,CRT 3252543-3252579 37 NC_007594 Enterococcus faecium plasmid pHT beta, complete sequence 11725-11761 8 0.784
NZ_CP017703_10 10.3|3252543|37|NZ_CP017703|CRISPRCasFinder,CRT 3252543-3252579 37 NZ_CP019972 Enterococcus faecium isolate 2014-VREF-114 plasmid p114-2 sequence 14623-14659 8 0.784
NZ_CP017703_10 10.3|3252543|37|NZ_CP017703|CRISPRCasFinder,CRT 3252543-3252579 37 NZ_CP018130 Enterococcus faecium strain A_020709_82 plasmid unnamed2, complete sequence 30109-30145 8 0.784
NZ_CP017703_10 10.8|3252545|37|NZ_CP017703|PILER-CR 3252545-3252581 37 NZ_LR135299 Enterococcus faecium isolate E7429 plasmid 3 47155-47191 8 0.784
NZ_CP017703_10 10.8|3252545|37|NZ_CP017703|PILER-CR 3252545-3252581 37 NZ_KY290886 Enterococcus faecalis strain Transconjugant T4 plasmid pJH-T4, complete sequence 51060-51096 8 0.784
NZ_CP017703_10 10.8|3252545|37|NZ_CP017703|PILER-CR 3252545-3252581 37 NZ_CP014451 Enterococcus faecium strain ATCC 700221 plasmid unnamed2, complete sequence 55368-55404 8 0.784
NZ_CP017703_10 10.8|3252545|37|NZ_CP017703|PILER-CR 3252545-3252581 37 NZ_LR135341 Enterococcus faecium isolate E7356 plasmid 3 25297-25333 8 0.784
NZ_CP017703_10 10.8|3252545|37|NZ_CP017703|PILER-CR 3252545-3252581 37 NZ_CP027515 Enterococcus faecium strain AUSMDU00004028 plasmid unnamed3, complete sequence 7925-7961 8 0.784
NZ_CP017703_10 10.8|3252545|37|NZ_CP017703|PILER-CR 3252545-3252581 37 NC_011364 Enterococcus faecium plasmid pMG1, complete sequence 22412-22448 8 0.784
NZ_CP017703_10 10.8|3252545|37|NZ_CP017703|PILER-CR 3252545-3252581 37 NZ_CP014535 Enterococcus faecium strain E745 plasmid pl6, complete sequence 21175-21211 8 0.784
NZ_CP017703_10 10.8|3252545|37|NZ_CP017703|PILER-CR 3252545-3252581 37 NC_007594 Enterococcus faecium plasmid pHT beta, complete sequence 11725-11761 8 0.784
NZ_CP017703_10 10.8|3252545|37|NZ_CP017703|PILER-CR 3252545-3252581 37 NZ_CP019972 Enterococcus faecium isolate 2014-VREF-114 plasmid p114-2 sequence 14623-14659 8 0.784
NZ_CP017703_10 10.8|3252545|37|NZ_CP017703|PILER-CR 3252545-3252581 37 NZ_CP018130 Enterococcus faecium strain A_020709_82 plasmid unnamed2, complete sequence 30109-30145 8 0.784
NZ_CP017703_1 1.43|268236|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 268236-268269 34 NZ_CP016596 Bacillus cereus strain K8 plasmid pBCM301, complete sequence 298420-298453 9 0.735
NZ_CP017703_1 1.43|268236|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 268236-268269 34 NZ_CP010112 Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-6, complete sequence 159954-159987 9 0.735
NZ_CP017703_1 1.43|268236|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 268236-268269 34 NZ_CP015730 Bacillus cereus strain A1 plasmid pBCA1, complete sequence 95426-95459 9 0.735
NZ_CP017703_1 1.75|270366|33|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 270366-270398 33 GU071103 Prochlorococcus phage P-SSM7, complete genome 122719-122751 9 0.727
NZ_CP017703_1 1.53|268903|35|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 268903-268937 35 EU874396 Bacillus phage IEBH, complete genome 11421-11455 10 0.714
NZ_CP017703_1 1.53|268903|35|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 268903-268937 35 NC_031055 Bacillus phage PfEFR-5, complete genome 37917-37951 10 0.714
NZ_CP017703_1 1.53|268903|35|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 268903-268937 35 NC_048641 Bacillus phage PfEFR-4, complete genome 37320-37354 10 0.714
NZ_CP017703_1 1.68|269900|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 269900-269933 34 AP014335 Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S36-C6, *** SEQUENCING IN PROGRESS *** 10624-10657 10 0.706
NZ_CP017703_1 1.69|269966|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 269966-269999 34 NZ_CP040048 Acinetobacter baumannii strain VB1190 plasmid unnamed1, complete sequence 73017-73050 10 0.706
NZ_CP017703_1 1.69|269966|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 269966-269999 34 MT648819 Acinetobacter phage C001, partial genome 80428-80461 10 0.706
NZ_CP017703_2 2.2|546363|34|NZ_CP017703|CRISPRCasFinder,CRT 546363-546396 34 NC_015417 Clostridium botulinum BKT015925 plasmid p1BKT015925, complete sequence 72936-72969 10 0.706
NZ_CP017703_1 1.60|269367|35|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 269367-269401 35 MT074137 Bacteroides phage DAC16, complete genome 143811-143845 11 0.686
NZ_CP017703_1 1.60|269367|35|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 269367-269401 35 MT074142 Bacteroides phage DAC23, complete genome 145842-145876 11 0.686
NZ_CP017703_1 1.60|269367|35|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 269367-269401 35 MT074141 Bacteroides phage DAC22, complete genome 146286-146320 11 0.686
NZ_CP017703_1 1.60|269367|35|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 269367-269401 35 MT074139 Bacteroides phage DAC19, complete genome 145923-145957 11 0.686
NZ_CP017703_1 1.60|269367|35|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 269367-269401 35 MT074140 Bacteroides phage DAC20, complete genome 145922-145956 11 0.686
NZ_CP017703_1 1.62|269500|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 269500-269533 34 NC_020385 Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-328, complete sequence 307993-308026 11 0.676
NZ_CP017703_1 1.62|269500|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 269500-269533 34 CP020755 Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-16, complete sequence 499932-499965 11 0.676
NZ_CP017703_1 1.62|269500|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 269500-269533 34 NZ_CP021062 Bacillus thuringiensis strain ATCC 10792 plasmid poh1, complete sequence 130953-130986 11 0.676
NZ_CP017703_4 4.1|2046041|36|NZ_CP017703|CRISPRCasFinder 2046041-2046076 36 NZ_CP031652 Pantoea agglomerans strain TH81 plasmid unnamed3, complete sequence 78185-78220 11 0.694
NZ_CP017703_1 1.43|268236|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 268236-268269 34 NZ_LR135288 Enterococcus faecium isolate E7199 plasmid 2 130194-130227 12 0.647
NZ_CP017703_1 1.43|268236|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 268236-268269 34 MT074686 Enterococcus faecium strain E1077 plasmid pE1077-217, complete sequence 94028-94061 12 0.647
NZ_CP017703_1 1.43|268236|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 268236-268269 34 NZ_LR135783 Enterococcus faecium isolate E4239 plasmid 2 116690-116723 12 0.647
NZ_CP017703_1 1.43|268236|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 268236-268269 34 NZ_CP040905 Enterococcus faecium strain N56454 plasmid unnamed, complete sequence 30791-30824 12 0.647
NZ_CP017703_1 1.43|268236|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 268236-268269 34 NZ_CP011829 Enterococcus faecium strain UW8175 plasmid unnamed1, complete sequence 168617-168650 12 0.647
NZ_CP017703_1 1.43|268236|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 268236-268269 34 NZ_AP019395 Enterococcus faecium strain QU 50 plasmid pQL50, complete sequence 125663-125696 12 0.647
NZ_CP017703_1 1.43|268236|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 268236-268269 34 NZ_LN999988 Enterococcus faecium isolate EFE11651 plasmid II, complete sequence 118737-118770 12 0.647
NZ_CP017703_1 1.43|268236|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 268236-268269 34 NZ_CP014530 Enterococcus faecium strain E745 plasmid pl1, complete sequence 147043-147076 12 0.647
NZ_CP017703_1 1.43|268236|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 268236-268269 34 NZ_LR135171 Enterococcus faecium isolate E4227 plasmid 2 119341-119374 12 0.647
NZ_CP017703_1 1.43|268236|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 268236-268269 34 NZ_CP018129 Enterococcus faecium strain A_020709_82 plasmid unnamed1, complete sequence 70763-70796 12 0.647
NZ_CP017703_1 1.43|268236|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 268236-268269 34 NC_020208 Enterococcus faecium ATCC 8459 = NRRL B-2354 plasmid pNB2354_1, complete sequence 179612-179645 12 0.647
NZ_CP017703_1 1.43|268236|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 268236-268269 34 NZ_CP034945 Enterococcus faecium strain NM213 plasmid unnamed2, complete sequence 29329-29362 12 0.647
NZ_CP017703_1 1.43|268236|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT 268236-268269 34 NZ_CP034948 Enterococcus faecium strain NM213 plasmid unnamed5, complete sequence 132131-132164 12 0.647

1. spacer 1.41|268102|35|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to NC_048651 (Aeribacillus phage AP45, complete genome) position: , mismatch: 0, identity: 1.0

aacttatacgacgttggttttgctctcggttatac	CRISPR spacer
aacttatacgacgttggttttgctctcggttatac	Protospacer
***********************************

2. spacer 1.44|268302|37|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to MG969427 (Anoxybacillus phage A403, complete genome) position: , mismatch: 0, identity: 1.0

ccgtaatccaaaactgcgtcaagaatgctcatctctc	CRISPR spacer
ccgtaatccaaaactgcgtcaagaatgctcatctctc	Protospacer
*************************************

3. spacer 1.50|268704|35|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to MG969427 (Anoxybacillus phage A403, complete genome) position: , mismatch: 0, identity: 1.0

tcaagatttgaggcttgggttgatctattgttgat	CRISPR spacer
tcaagatttgaggcttgggttgatctattgttgat	Protospacer
***********************************

4. spacer 1.52|268838|33|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to NC_048651 (Aeribacillus phage AP45, complete genome) position: , mismatch: 0, identity: 1.0

acatgggaacagatcgaggcggcatatctccaa	CRISPR spacer
acatgggaacagatcgaggcggcatatctccaa	Protospacer
*********************************

5. spacer 1.68|269900|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to NC_048651 (Aeribacillus phage AP45, complete genome) position: , mismatch: 0, identity: 1.0

cggaaatgtagtagcaggatggggaatgattgca	CRISPR spacer
cggaaatgtagtagcaggatggggaatgattgca	Protospacer
**********************************

6. spacer 1.84|270961|35|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to NC_048651 (Aeribacillus phage AP45, complete genome) position: , mismatch: 0, identity: 1.0

aacttatacgacgttggttttgctctcggttatac	CRISPR spacer
aacttatacgacgttggttttgctctcggttatac	Protospacer
***********************************

7. spacer 1.97|271823|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to MG969427 (Anoxybacillus phage A403, complete genome) position: , mismatch: 0, identity: 1.0

agagacacagcaaaagaattgcacattaagcaaa	CRISPR spacer
agagacacagcaaaagaattgcacattaagcaaa	Protospacer
**********************************

8. spacer 1.97|271823|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to NC_048651 (Aeribacillus phage AP45, complete genome) position: , mismatch: 0, identity: 1.0

agagacacagcaaaagaattgcacattaagcaaa	CRISPR spacer
agagacacagcaaaagaattgcacattaagcaaa	Protospacer
**********************************

9. spacer 1.103|272219|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to MG969427 (Anoxybacillus phage A403, complete genome) position: , mismatch: 0, identity: 1.0

agagacacagcaaaagaattgcacattaagcaaa	CRISPR spacer
agagacacagcaaaagaattgcacattaagcaaa	Protospacer
**********************************

10. spacer 1.103|272219|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to NC_048651 (Aeribacillus phage AP45, complete genome) position: , mismatch: 0, identity: 1.0

agagacacagcaaaagaattgcacattaagcaaa	CRISPR spacer
agagacacagcaaaagaattgcacattaagcaaa	Protospacer
**********************************

11. spacer 6.1|2855677|31|NZ_CP017703|CRISPRCasFinder matches to MG969427 (Anoxybacillus phage A403, complete genome) position: , mismatch: 0, identity: 1.0

cttcagagccatgccattctccttgacggac	CRISPR spacer
cttcagagccatgccattctccttgacggac	Protospacer
*******************************

12. spacer 8.6|3215748|37|NZ_CP017703|CRISPRCasFinder,CRT,PILER-CR matches to MG969427 (Anoxybacillus phage A403, complete genome) position: , mismatch: 0, identity: 1.0

gatgtgttttcccagttcctgttgagcccattatcaa	CRISPR spacer
gatgtgttttcccagttcctgttgagcccattatcaa	Protospacer
*************************************

13. spacer 1.44|268302|37|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to NC_048651 (Aeribacillus phage AP45, complete genome) position: , mismatch: 1, identity: 0.973

ccgtaatccaaaactgcgtcaagaatgctcatctctc	CRISPR spacer
ccgtaatccaaaactgcgtcaagaatgctcatttctc	Protospacer
********************************.****

14. spacer 1.67|269833|35|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to NC_019544 (Deep-sea thermophilic phage D6E, complete genome) position: , mismatch: 1, identity: 0.971

tgttcatacttctcgaaccaatgcggcccaaaatc	CRISPR spacer
tgttcatacttctcaaaccaatgcggcccaaaatc	Protospacer
**************.********************

15. spacer 2.4|546492|36|NZ_CP017703|CRISPRCasFinder,CRT matches to NC_029073 (Geobacillus virus E3, complete genome) position: , mismatch: 1, identity: 0.972

aagatggcaacttgctgcctgatgatggcaagccaa	CRISPR spacer
aagatggcaacttgctacctgatgatggcaagccaa	Protospacer
****************.*******************

16. spacer 1.45|268371|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015358 (Bacillus thuringiensis strain MYBT18246 plasmid p46701, complete sequence) position: , mismatch: 2, identity: 0.941

aaatcaatccgaatatcatcaacccctttccgga	CRISPR spacer
aaatcaatccgaatatcatccacacctttccgga	Protospacer
******************** ** **********

17. spacer 1.83|270895|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to MG969427 (Anoxybacillus phage A403, complete genome) position: , mismatch: 2, identity: 0.941

atctcaacattttctatttttccggctagttctg	CRISPR spacer
atctcaacattttctattttcccgactagttctg	Protospacer
********************.***.*********

18. spacer 10.1|3252419|35|NZ_CP017703|CRISPRCasFinder,CRT matches to MG969427 (Anoxybacillus phage A403, complete genome) position: , mismatch: 2, identity: 0.943

gctgcagctgaggcaagaactgaaatgatagatga	CRISPR spacer
gctgaagctgaggcaagagctgaaatgatagatga	Protospacer
**** *************.****************

19. spacer 10.6|3252421|35|NZ_CP017703|PILER-CR matches to MG969427 (Anoxybacillus phage A403, complete genome) position: , mismatch: 2, identity: 0.943

gctgcagctgaggcaagaactgaaatgatagatga	CRISPR spacer
gctgaagctgaggcaagagctgaaatgatagatga	Protospacer
**** *************.****************

20. spacer 7.7|3112902|38|NZ_CP017703|CRISPRCasFinder,CRT,PILER-CR matches to MG969427 (Anoxybacillus phage A403, complete genome) position: , mismatch: 3, identity: 0.921

ggcgatccaagtcttttgcgcttttcccttcatcaaca	CRISPR spacer
gacgatcaaggtcttttgcgcttttcccttcatcaaca	Protospacer
*.***** *.****************************

21. spacer 7.8|3112970|38|NZ_CP017703|CRISPRCasFinder,CRT,PILER-CR matches to MG969427 (Anoxybacillus phage A403, complete genome) position: , mismatch: 3, identity: 0.921

ggcgatccaagtcttttgcgcttttcccttcatcaaca	CRISPR spacer
gacgatcaaggtcttttgcgcttttcccttcatcaaca	Protospacer
*.***** *.****************************

22. spacer 1.45|268371|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to GU233956 (Bacillus phage 11143, partial sequence) position: , mismatch: 4, identity: 0.882

aaatcaatccgaatatcatcaacccctttccgga	CRISPR spacer
tgatcaatccgaatatcatcaactcctttcctga	Protospacer
 .*********************.******* **

23. spacer 1.28|267238|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to NC_019544 (Deep-sea thermophilic phage D6E, complete genome) position: , mismatch: 5, identity: 0.853

tatcatcgagcgatcgccatacccaatgctttcc	CRISPR spacer
gatcatcgagcgatcgccatacccaatgccgttt	Protospacer
 ****************************. *..

24. spacer 10.2|3252484|29|NZ_CP017703|CRISPRCasFinder,CRT matches to NZ_CP026605 (Catenovulum sp. CCB-QB4 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.793

cagacccaacagacaccagagacggagag	CRISPR spacer
cacacccaacagacaccagcgacgaccat	Protospacer
** **************** ****.  * 

25. spacer 10.7|3252486|29|NZ_CP017703|PILER-CR matches to NZ_CP026605 (Catenovulum sp. CCB-QB4 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.793

cagacccaacagacaccagagacggagag	CRISPR spacer
cacacccaacagacaccagcgacgaccat	Protospacer
** **************** ****.  * 

26. spacer 1.2|265518|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to NC_004957 (Lactobacillus sp. PC121B plasmid p121BS, complete sequence) position: , mismatch: 7, identity: 0.794

----atcacggtctaattttttgtttgcattataaaga	CRISPR spacer
tataacca----cttattttttgtttgcatgataaaga	Protospacer
    *.**    ** *************** *******

27. spacer 1.47|268504|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to MG945719 (UNVERIFIED: Microviridae sp. isolate 2075-1801, complete genome) position: , mismatch: 7, identity: 0.794

tttattgaaagccttaaaggttacttttacttcc-	CRISPR spacer
atgattgacagccttaaaggtaac-tttactgcga	Protospacer
 * ***** ************ ** ****** *  

28. spacer 1.62|269500|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009595 (Bacillus cereus strain 3a plasmid pBFC_3, complete sequence) position: , mismatch: 7, identity: 0.794

attaaacggtataggcagtagaacacaacaaatc	CRISPR spacer
atctatcattataggcagtagtacacaacaaatg	Protospacer
**. * *. ************ *********** 

29. spacer 1.62|269500|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009606 (Bacillus cereus strain S2-8 plasmid pBFR_2, complete sequence) position: , mismatch: 7, identity: 0.794

attaaacggtataggcagtagaacacaacaaatc	CRISPR spacer
atctatcattataggcagtagtacacaacaaatg	Protospacer
**. * *. ************ *********** 

30. spacer 1.62|269500|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053994 (Bacillus cereus strain FDAARGOS_780 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.794

attaaacggtataggcagtagaacacaacaaatc	CRISPR spacer
atctatcattataggcagtagtacacaacaaatg	Protospacer
**. * *. ************ *********** 

31. spacer 1.62|269500|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042875 (Bacillus cereus strain 09 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.794

attaaacggtataggcagtagaacacaacaaatc	CRISPR spacer
atctatcattataggcagtagtacacaacaaatg	Protospacer
**. * *. ************ *********** 

32. spacer 1.62|269500|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053992 (Bacillus cereus strain FDAARGOS_781 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.794

attaaacggtataggcagtagaacacaacaaatc	CRISPR spacer
atctatcattataggcagtagtacacaacaaatg	Protospacer
**. * *. ************ *********** 

33. spacer 1.62|269500|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009636 (Bacillus cereus 03BB108 plasmid pBFI_2, complete sequence) position: , mismatch: 7, identity: 0.794

attaaacggtataggcagtagaacacaacaaatc	CRISPR spacer
atctatcattataggcagtagtacacaacaaatg	Protospacer
**. * *. ************ *********** 

34. spacer 1.62|269500|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053962 (Bacillus cereus strain FDAARGOS_802 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.794

attaaacggtataggcagtagaacacaacaaatc	CRISPR spacer
atctatcattataggcagtagtacacaacaaatg	Protospacer
**. * *. ************ *********** 

35. spacer 2.3|546427|35|NZ_CP017703|CRISPRCasFinder,CRT matches to GU949551 (Clostridium phage phiCD6356, complete genome) position: , mismatch: 7, identity: 0.8

tctggatacacaccatcaacaacagctccagctaa	CRISPR spacer
tctggataaacaccttcaacaacagagccttttaa	Protospacer
******** ***** **********  **  .***

36. spacer 2.6|546623|35|NZ_CP017703|CRISPRCasFinder,CRT matches to GU949551 (Clostridium phage phiCD6356, complete genome) position: , mismatch: 7, identity: 0.8

tctggatacacaccatcaacaacagctccagctaa	CRISPR spacer
tctggataaacaccttcaacaacagagccttttaa	Protospacer
******** ***** **********  **  .***

37. spacer 5.1|2422580|35|NZ_CP017703|CRISPRCasFinder matches to KP399677 (Listeria phage vB_LmoS_188, complete genome) position: , mismatch: 7, identity: 0.8

aataaacgacactacccaatgacataccagtaatg	CRISPR spacer
aaaacgtaacagtacccaatgacataccagtaata	Protospacer
** * ...*** **********************.

38. spacer 5.1|2422580|35|NZ_CP017703|CRISPRCasFinder matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 7, identity: 0.8

aataaacgacactacccaatgacataccagtaatg	CRISPR spacer
aaaacgtaacagtacccaatgacataccagtaata	Protospacer
** * ...*** **********************.

39. spacer 1.2|265518|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to MT774394 (CrAssphage cr271_1, complete genome) position: , mismatch: 8, identity: 0.765

atcacggtctaattttttgtttgcattataaaga	CRISPR spacer
tttatgatttaatttttggttttcattataaagt	Protospacer
 *.*.*.*.******** **** ********** 

40. spacer 1.5|265716|35|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to MG969427 (Anoxybacillus phage A403, complete genome) position: , mismatch: 8, identity: 0.771

tgatgccaaaccgttcatatgcctcctccaatcgt	CRISPR spacer
tgatgccaaaccgttcatatgcttctgcaatcctc	Protospacer
**********************.**. * * .* .

41. spacer 1.43|268236|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to MG592459 (Vibrio phage 1.084.O._10N.261.49.F5, partial genome) position: , mismatch: 8, identity: 0.765

catctaccgtttttactttttttct-----atagttatc	CRISPR spacer
aatttaccgtttttacttttattcttgataatag-----	Protospacer
 **.**************** ****     ****     

42. spacer 1.56|269102|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to KJ019094 (Synechococcus phage ACG-2014e isolate Syn7803US33, complete genome) position: , mismatch: 8, identity: 0.765

attattttgaggatagaggtgtacaaa-aatatta	CRISPR spacer
tttattgtgaggatacaggtgtacaagcaacacc-	Protospacer
 ***** ******** **********. **.*.. 

43. spacer 1.56|269102|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to KJ019156 (Synechococcus phage ACG-2014e isolate Syn7803C2, complete genome) position: , mismatch: 8, identity: 0.765

attattttgaggatagaggtgtacaaa-aatatta	CRISPR spacer
tttattgtgaggatacaggtgtacaagcaacacc-	Protospacer
 ***** ******** **********. **.*.. 

44. spacer 1.56|269102|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to KJ019054 (Synechococcus phage ACG-2014e isolate Syn7803C85, complete genome) position: , mismatch: 8, identity: 0.765

attattttgaggatagaggtgtacaaa-aatatta	CRISPR spacer
tttattgtgaggatacaggtgtacaagcaacacc-	Protospacer
 ***** ******** **********. **.*.. 

45. spacer 10.3|3252543|37|NZ_CP017703|CRISPRCasFinder,CRT matches to NZ_LR135299 (Enterococcus faecium isolate E7429 plasmid 3) position: , mismatch: 8, identity: 0.784

attattgggtgattaaattaggagaaaacttgtacta	CRISPR spacer
tttaactgatgatgaaattaggcgaaaacttgtacaa	Protospacer
 *** . *.**** ******** ************ *

46. spacer 10.3|3252543|37|NZ_CP017703|CRISPRCasFinder,CRT matches to NZ_KY290886 (Enterococcus faecalis strain Transconjugant T4 plasmid pJH-T4, complete sequence) position: , mismatch: 8, identity: 0.784

attattgggtgattaaattaggagaaaacttgtacta	CRISPR spacer
tttaactgatgatgaaattaggcgaaaacttgtacaa	Protospacer
 *** . *.**** ******** ************ *

47. spacer 10.3|3252543|37|NZ_CP017703|CRISPRCasFinder,CRT matches to NZ_CP014451 (Enterococcus faecium strain ATCC 700221 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.784

attattgggtgattaaattaggagaaaacttgtacta	CRISPR spacer
tttaactgatgatgaaattaggcgaaaacttgtacaa	Protospacer
 *** . *.**** ******** ************ *

48. spacer 10.3|3252543|37|NZ_CP017703|CRISPRCasFinder,CRT matches to NZ_LR135341 (Enterococcus faecium isolate E7356 plasmid 3) position: , mismatch: 8, identity: 0.784

attattgggtgattaaattaggagaaaacttgtacta	CRISPR spacer
tttaactgatgatgaaattaggcgaaaacttgtacaa	Protospacer
 *** . *.**** ******** ************ *

49. spacer 10.3|3252543|37|NZ_CP017703|CRISPRCasFinder,CRT matches to NZ_CP027515 (Enterococcus faecium strain AUSMDU00004028 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.784

attattgggtgattaaattaggagaaaacttgtacta	CRISPR spacer
tttaactgatgatgaaattaggcgaaaacttgtacaa	Protospacer
 *** . *.**** ******** ************ *

50. spacer 10.3|3252543|37|NZ_CP017703|CRISPRCasFinder,CRT matches to NC_011364 (Enterococcus faecium plasmid pMG1, complete sequence) position: , mismatch: 8, identity: 0.784

attattgggtgattaaattaggagaaaacttgtacta	CRISPR spacer
tttaactgatgatgaaattaggcgaaaacttgtacaa	Protospacer
 *** . *.**** ******** ************ *

51. spacer 10.3|3252543|37|NZ_CP017703|CRISPRCasFinder,CRT matches to NZ_CP014535 (Enterococcus faecium strain E745 plasmid pl6, complete sequence) position: , mismatch: 8, identity: 0.784

attattgggtgattaaattaggagaaaacttgtacta	CRISPR spacer
tttaactgatgatgaaattaggcgaaaacttgtacaa	Protospacer
 *** . *.**** ******** ************ *

52. spacer 10.3|3252543|37|NZ_CP017703|CRISPRCasFinder,CRT matches to NC_007594 (Enterococcus faecium plasmid pHT beta, complete sequence) position: , mismatch: 8, identity: 0.784

attattgggtgattaaattaggagaaaacttgtacta	CRISPR spacer
tttaactgatgatgaaattaggcgaaaacttgtacaa	Protospacer
 *** . *.**** ******** ************ *

53. spacer 10.3|3252543|37|NZ_CP017703|CRISPRCasFinder,CRT matches to NZ_CP019972 (Enterococcus faecium isolate 2014-VREF-114 plasmid p114-2 sequence) position: , mismatch: 8, identity: 0.784

attattgggtgattaaattaggagaaaacttgtacta	CRISPR spacer
tttaactgatgatgaaattaggcgaaaacttgtacaa	Protospacer
 *** . *.**** ******** ************ *

54. spacer 10.3|3252543|37|NZ_CP017703|CRISPRCasFinder,CRT matches to NZ_CP018130 (Enterococcus faecium strain A_020709_82 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.784

attattgggtgattaaattaggagaaaacttgtacta	CRISPR spacer
tttaactgatgatgaaattaggcgaaaacttgtacaa	Protospacer
 *** . *.**** ******** ************ *

55. spacer 10.8|3252545|37|NZ_CP017703|PILER-CR matches to NZ_LR135299 (Enterococcus faecium isolate E7429 plasmid 3) position: , mismatch: 8, identity: 0.784

attattgggtgattaaattaggagaaaacttgtacta	CRISPR spacer
tttaactgatgatgaaattaggcgaaaacttgtacaa	Protospacer
 *** . *.**** ******** ************ *

56. spacer 10.8|3252545|37|NZ_CP017703|PILER-CR matches to NZ_KY290886 (Enterococcus faecalis strain Transconjugant T4 plasmid pJH-T4, complete sequence) position: , mismatch: 8, identity: 0.784

attattgggtgattaaattaggagaaaacttgtacta	CRISPR spacer
tttaactgatgatgaaattaggcgaaaacttgtacaa	Protospacer
 *** . *.**** ******** ************ *

57. spacer 10.8|3252545|37|NZ_CP017703|PILER-CR matches to NZ_CP014451 (Enterococcus faecium strain ATCC 700221 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.784

attattgggtgattaaattaggagaaaacttgtacta	CRISPR spacer
tttaactgatgatgaaattaggcgaaaacttgtacaa	Protospacer
 *** . *.**** ******** ************ *

58. spacer 10.8|3252545|37|NZ_CP017703|PILER-CR matches to NZ_LR135341 (Enterococcus faecium isolate E7356 plasmid 3) position: , mismatch: 8, identity: 0.784

attattgggtgattaaattaggagaaaacttgtacta	CRISPR spacer
tttaactgatgatgaaattaggcgaaaacttgtacaa	Protospacer
 *** . *.**** ******** ************ *

59. spacer 10.8|3252545|37|NZ_CP017703|PILER-CR matches to NZ_CP027515 (Enterococcus faecium strain AUSMDU00004028 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.784

attattgggtgattaaattaggagaaaacttgtacta	CRISPR spacer
tttaactgatgatgaaattaggcgaaaacttgtacaa	Protospacer
 *** . *.**** ******** ************ *

60. spacer 10.8|3252545|37|NZ_CP017703|PILER-CR matches to NC_011364 (Enterococcus faecium plasmid pMG1, complete sequence) position: , mismatch: 8, identity: 0.784

attattgggtgattaaattaggagaaaacttgtacta	CRISPR spacer
tttaactgatgatgaaattaggcgaaaacttgtacaa	Protospacer
 *** . *.**** ******** ************ *

61. spacer 10.8|3252545|37|NZ_CP017703|PILER-CR matches to NZ_CP014535 (Enterococcus faecium strain E745 plasmid pl6, complete sequence) position: , mismatch: 8, identity: 0.784

attattgggtgattaaattaggagaaaacttgtacta	CRISPR spacer
tttaactgatgatgaaattaggcgaaaacttgtacaa	Protospacer
 *** . *.**** ******** ************ *

62. spacer 10.8|3252545|37|NZ_CP017703|PILER-CR matches to NC_007594 (Enterococcus faecium plasmid pHT beta, complete sequence) position: , mismatch: 8, identity: 0.784

attattgggtgattaaattaggagaaaacttgtacta	CRISPR spacer
tttaactgatgatgaaattaggcgaaaacttgtacaa	Protospacer
 *** . *.**** ******** ************ *

63. spacer 10.8|3252545|37|NZ_CP017703|PILER-CR matches to NZ_CP019972 (Enterococcus faecium isolate 2014-VREF-114 plasmid p114-2 sequence) position: , mismatch: 8, identity: 0.784

attattgggtgattaaattaggagaaaacttgtacta	CRISPR spacer
tttaactgatgatgaaattaggcgaaaacttgtacaa	Protospacer
 *** . *.**** ******** ************ *

64. spacer 10.8|3252545|37|NZ_CP017703|PILER-CR matches to NZ_CP018130 (Enterococcus faecium strain A_020709_82 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.784

attattgggtgattaaattaggagaaaacttgtacta	CRISPR spacer
tttaactgatgatgaaattaggcgaaaacttgtacaa	Protospacer
 *** . *.**** ******** ************ *

65. spacer 1.43|268236|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016596 (Bacillus cereus strain K8 plasmid pBCM301, complete sequence) position: , mismatch: 9, identity: 0.735

catctaccgtttttactttttttctatagttatc	CRISPR spacer
caatagcattttttactgtttttctatggttatt	Protospacer
** . .*  ******** *********.*****.

66. spacer 1.43|268236|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010112 (Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-6, complete sequence) position: , mismatch: 9, identity: 0.735

catctaccgtttttactttttttctatagttatc	CRISPR spacer
caatagcattttttactgtttttctatggttatt	Protospacer
** . .*  ******** *********.*****.

67. spacer 1.43|268236|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015730 (Bacillus cereus strain A1 plasmid pBCA1, complete sequence) position: , mismatch: 9, identity: 0.735

catctaccgtttttactttttttctatagttatc	CRISPR spacer
caatagcattttttactgtttttctattgttatt	Protospacer
** . .*  ******** ********* *****.

68. spacer 1.75|270366|33|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to GU071103 (Prochlorococcus phage P-SSM7, complete genome) position: , mismatch: 9, identity: 0.727

ttttagatcaataaacttttgtttgtcataatt	CRISPR spacer
gtaatgatcaataaaattttgattgtcattacg	Protospacer
 *   ********** ***** ******* *. 

69. spacer 1.53|268903|35|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to EU874396 (Bacillus phage IEBH, complete genome) position: , mismatch: 10, identity: 0.714

cgtattttcctcgcacaatatctcctgcataaatt	CRISPR spacer
catcaagatatcgaacaatatctccttcataaatt	Protospacer
*.*     . *** ************ ********

70. spacer 1.53|268903|35|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to NC_031055 (Bacillus phage PfEFR-5, complete genome) position: , mismatch: 10, identity: 0.714

cgtattttcctcgcacaatatctcctgcataaatt	CRISPR spacer
catcaagatatcgaacaatatctccttcataaatt	Protospacer
*.*     . *** ************ ********

71. spacer 1.53|268903|35|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to NC_048641 (Bacillus phage PfEFR-4, complete genome) position: , mismatch: 10, identity: 0.714

cgtattttcctcgcacaatatctcctgcataaatt	CRISPR spacer
catcaagatatcgaacaatatctccttcataaatt	Protospacer
*.*     . *** ************ ********

72. spacer 1.68|269900|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to AP014335 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S36-C6, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.706

cggaaatgtagtagcaggatggggaatgattgca	CRISPR spacer
tctaaatgtagtagcaggttgggtaataagaaaa	Protospacer
.  *************** **** ***.*  . *

73. spacer 1.69|269966|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040048 (Acinetobacter baumannii strain VB1190 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

tgtttttcagatcattgatgttaaagacccaatc	CRISPR spacer
agtttttttgatcattgatgttaaaattgaaccc	Protospacer
 ******. ****************. .  * .*

74. spacer 1.69|269966|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to MT648819 (Acinetobacter phage C001, partial genome) position: , mismatch: 10, identity: 0.706

tgtttttcagatcattgatgttaaagacccaatc	CRISPR spacer
agtttttttgatcattgatgttaaaattgaaccc	Protospacer
 ******. ****************. .  * .*

75. spacer 2.2|546363|34|NZ_CP017703|CRISPRCasFinder,CRT matches to NC_015417 (Clostridium botulinum BKT015925 plasmid p1BKT015925, complete sequence) position: , mismatch: 10, identity: 0.706

aaatattccatactctttcttttgcatcttcttc	CRISPR spacer
taatatgccatactttttcttttgctcttgtaac	Protospacer
 ***** *******.********** ..* .  *

76. spacer 1.60|269367|35|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to MT074137 (Bacteroides phage DAC16, complete genome) position: , mismatch: 11, identity: 0.686

---------ttctcttctttggataaagctttaaaagaatttaa	CRISPR spacer
gaaaaagaat---------tgtataaagctttaaaagaatataa	Protospacer
         *         ** ****************** ***

77. spacer 1.60|269367|35|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to MT074142 (Bacteroides phage DAC23, complete genome) position: , mismatch: 11, identity: 0.686

---------ttctcttctttggataaagctttaaaagaatttaa	CRISPR spacer
gaaaaagaat---------tgtataaagctttaaaagaatataa	Protospacer
         *         ** ****************** ***

78. spacer 1.60|269367|35|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to MT074141 (Bacteroides phage DAC22, complete genome) position: , mismatch: 11, identity: 0.686

---------ttctcttctttggataaagctttaaaagaatttaa	CRISPR spacer
gaaaaagaat---------tgtataaagctttaaaagaatataa	Protospacer
         *         ** ****************** ***

79. spacer 1.60|269367|35|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to MT074139 (Bacteroides phage DAC19, complete genome) position: , mismatch: 11, identity: 0.686

---------ttctcttctttggataaagctttaaaagaatttaa	CRISPR spacer
gaaaaagaat---------tgtataaagctttaaaagaatataa	Protospacer
         *         ** ****************** ***

80. spacer 1.60|269367|35|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to MT074140 (Bacteroides phage DAC20, complete genome) position: , mismatch: 11, identity: 0.686

---------ttctcttctttggataaagctttaaaagaatttaa	CRISPR spacer
gaaaaagaat---------tgtataaagctttaaaagaatataa	Protospacer
         *         ** ****************** ***

81. spacer 1.62|269500|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to NC_020385 (Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-328, complete sequence) position: , mismatch: 11, identity: 0.676

attaaacggtataggcagtagaacacaacaaatc	CRISPR spacer
tgcgattattataggcagtagtacccaacaaatg	Protospacer
  ..* .. ************ ** ******** 

82. spacer 1.62|269500|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to CP020755 (Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-16, complete sequence) position: , mismatch: 11, identity: 0.676

attaaacggtataggcagtagaacacaacaaatc	CRISPR spacer
tgcgattattataggcagtagtacccaacaaatg	Protospacer
  ..* .. ************ ** ******** 

83. spacer 1.62|269500|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021062 (Bacillus thuringiensis strain ATCC 10792 plasmid poh1, complete sequence) position: , mismatch: 11, identity: 0.676

attaaacggtataggcagtagaacacaacaaatc	CRISPR spacer
tgcgattattataggcagtagtacccaacaaatg	Protospacer
  ..* .. ************ ** ******** 

84. spacer 4.1|2046041|36|NZ_CP017703|CRISPRCasFinder matches to NZ_CP031652 (Pantoea agglomerans strain TH81 plasmid unnamed3, complete sequence) position: , mismatch: 11, identity: 0.694

acgaaaaaactgacagtagaagaaattgaaaataac	CRISPR spacer
gaagggaaactgacagcagaagacattgaaaaaaca	Protospacer
. ....**********.****** ******** *  

85. spacer 1.43|268236|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR135288 (Enterococcus faecium isolate E7199 plasmid 2) position: , mismatch: 12, identity: 0.647

catctaccgtttttactttttttctatagttatc	CRISPR spacer
aggataccgttttaactttttttcaatatcctga	Protospacer
 .  ********* ********** *** ..   

86. spacer 1.43|268236|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to MT074686 (Enterococcus faecium strain E1077 plasmid pE1077-217, complete sequence) position: , mismatch: 12, identity: 0.647

catctaccgtttttactttttttctatagttatc	CRISPR spacer
aggataccgttttaactttttttcaatatcctga	Protospacer
 .  ********* ********** *** ..   

87. spacer 1.43|268236|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR135783 (Enterococcus faecium isolate E4239 plasmid 2) position: , mismatch: 12, identity: 0.647

catctaccgtttttactttttttctatagttatc	CRISPR spacer
aggataccgttttaactttttttcaatatcctga	Protospacer
 .  ********* ********** *** ..   

88. spacer 1.43|268236|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040905 (Enterococcus faecium strain N56454 plasmid unnamed, complete sequence) position: , mismatch: 12, identity: 0.647

catctaccgtttttactttttttctatagttatc	CRISPR spacer
aggataccgttttaactttttttcaatatcctga	Protospacer
 .  ********* ********** *** ..   

89. spacer 1.43|268236|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011829 (Enterococcus faecium strain UW8175 plasmid unnamed1, complete sequence) position: , mismatch: 12, identity: 0.647

catctaccgtttttactttttttctatagttatc	CRISPR spacer
aggataccgttttaactttttttcaatatcctga	Protospacer
 .  ********* ********** *** ..   

90. spacer 1.43|268236|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019395 (Enterococcus faecium strain QU 50 plasmid pQL50, complete sequence) position: , mismatch: 12, identity: 0.647

catctaccgtttttactttttttctatagttatc	CRISPR spacer
aggataccgttttaactttttttcaatatcctga	Protospacer
 .  ********* ********** *** ..   

91. spacer 1.43|268236|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LN999988 (Enterococcus faecium isolate EFE11651 plasmid II, complete sequence) position: , mismatch: 12, identity: 0.647

catctaccgtttttactttttttctatagttatc	CRISPR spacer
aggataccgttttaactttttttcaatatcctga	Protospacer
 .  ********* ********** *** ..   

92. spacer 1.43|268236|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014530 (Enterococcus faecium strain E745 plasmid pl1, complete sequence) position: , mismatch: 12, identity: 0.647

catctaccgtttttactttttttctatagttatc	CRISPR spacer
aggataccgttttaactttttttcaatatcctga	Protospacer
 .  ********* ********** *** ..   

93. spacer 1.43|268236|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR135171 (Enterococcus faecium isolate E4227 plasmid 2) position: , mismatch: 12, identity: 0.647

catctaccgtttttactttttttctatagttatc	CRISPR spacer
aggataccgttttaactttttttcaatatcctga	Protospacer
 .  ********* ********** *** ..   

94. spacer 1.43|268236|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018129 (Enterococcus faecium strain A_020709_82 plasmid unnamed1, complete sequence) position: , mismatch: 12, identity: 0.647

catctaccgtttttactttttttctatagttatc	CRISPR spacer
aggataccgttttaactttttttcaatatcctga	Protospacer
 .  ********* ********** *** ..   

95. spacer 1.43|268236|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to NC_020208 (Enterococcus faecium ATCC 8459 = NRRL B-2354 plasmid pNB2354_1, complete sequence) position: , mismatch: 12, identity: 0.647

catctaccgtttttactttttttctatagttatc	CRISPR spacer
aggataccgttttaactttttttcaatatcctga	Protospacer
 .  ********* ********** *** ..   

96. spacer 1.43|268236|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034945 (Enterococcus faecium strain NM213 plasmid unnamed2, complete sequence) position: , mismatch: 12, identity: 0.647

catctaccgtttttactttttttctatagttatc	CRISPR spacer
aggataccgttttaactttttttcaatatcctga	Protospacer
 .  ********* ********** *** ..   

97. spacer 1.43|268236|34|NZ_CP017703|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034948 (Enterococcus faecium strain NM213 plasmid unnamed5, complete sequence) position: , mismatch: 12, identity: 0.647

catctaccgtttttactttttttctatagttatc	CRISPR spacer
aggataccgttttaactttttttcaatatcctga	Protospacer
 .  ********* ********** *** ..   

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 12063 : 80023 58 Hokovirus(20.0%) transposase NA
DBSCAN-SWA_2 157139 : 212566 45 Synechococcus_phage(10.53%) transposase,tRNA NA
DBSCAN-SWA_3 369775 : 418840 39 Shigella_phage(25.0%) transposase NA
DBSCAN-SWA_4 679149 : 746303 51 Wolbachia_phage(16.67%) transposase,tRNA NA
DBSCAN-SWA_5 973820 : 1027428 46 Bacillus_phage(13.33%) integrase,transposase,protease,tRNA attL 1000515:1000530|attR 1029027:1029042
DBSCAN-SWA_6 1075569 : 1144784 59 Streptococcus_phage(15.79%) transposase,tRNA NA
DBSCAN-SWA_7 1210984 : 1268452 43 Vibrio_phage(25.0%) transposase,tRNA NA
DBSCAN-SWA_8 1394843 : 1503828 94 Staphylococcus_phage(25.0%) transposase,protease,tRNA NA
DBSCAN-SWA_9 1954808 : 1977782 21 Staphylococcus_phage(55.56%) integrase,transposase,tRNA attL 1954308:1954323|attR 1957428:1957443
DBSCAN-SWA_10 2288148 : 2356676 58 Staphylococcus_phage(30.77%) transposase NA
DBSCAN-SWA_11 2626230 : 2677455 47 Staphylococcus_phage(20.0%) transposase NA
DBSCAN-SWA_12 2700470 : 2770944 58 Bacillus_phage(12.5%) coat,transposase NA
DBSCAN-SWA_13 2788175 : 2844858 44 Enterobacteria_phage(25.0%) coat,transposase NA
DBSCAN-SWA_14 2862341 : 2912782 49 Bacillus_phage(55.56%) transposase NA
DBSCAN-SWA_15 2921242 : 2975751 42 Streptococcus_phage(22.22%) transposase,tRNA NA
DBSCAN-SWA_16 2997561 : 3033005 27 Staphylococcus_phage(33.33%) transposase NA
DBSCAN-SWA_17 3090314 : 3156430 56 Bacillus_phage(30.77%) transposase NA
DBSCAN-SWA_18 3164036 : 3232058 39 Bacillus_phage(27.27%) transposase NA
DBSCAN-SWA_19 3257237 : 3319923 58 Bacillus_phage(27.27%) coat,transposase,tRNA,protease NA
DBSCAN-SWA_20 3563182 : 3569736 8 Pandoravirus(16.67%) NA NA
DBSCAN-SWA_21 3609885 : 3617106 9 Staphylococcus_phage(57.14%) NA NA
DBSCAN-SWA_22 3711035 : 3774935 56 Bacillus_phage(18.18%) integrase,transposase,protease attL 3722575:3722591|attR 3744741:3744757
DBSCAN-SWA_23 3860635 : 3871177 8 Tupanvirus(33.33%) tRNA NA
DBSCAN-SWA_24 4002344 : 4061369 53 Bacillus_phage(40.0%) transposase,tRNA,protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage