CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP041101	Klebsiella pneumoniae subsp. pneumoniae strain KPCTRSRTH07 plasmid unnamed2, complete sequence	0 crisprs	DEDDh	2
NZ_CP041099	Klebsiella pneumoniae subsp. pneumoniae strain KPCTRSRTH07 chromosome, complete genome	2 crisprs	WYL,csa3,cas3,DEDDh,RT,DinG	11
NZ_CP041103	Klebsiella pneumoniae subsp. pneumoniae strain KPCTRSRTH07 plasmid unnamed4, complete sequence	0 crisprs	DEDDh	0
NZ_CP041100	Klebsiella pneumoniae subsp. pneumoniae strain KPCTRSRTH07 plasmid unnamed1, complete sequence	0 crisprs	csa3,cas3,RT	2
NZ_CP041107	Klebsiella pneumoniae subsp. pneumoniae strain KPCTRSRTH07 plasmid unnamed8, complete sequence	0 crisprs	NA	0
NZ_CP041105	Klebsiella pneumoniae subsp. pneumoniae strain KPCTRSRTH07 plasmid unnamed6, complete sequence	0 crisprs	NA	0
NZ_CP041109	Klebsiella pneumoniae subsp. pneumoniae strain KPCTRSRTH07 plasmid unnamed10, complete sequence	0 crisprs	NA	0
NZ_CP041108	Klebsiella pneumoniae subsp. pneumoniae strain KPCTRSRTH07 plasmid unnamed9, complete sequence	0 crisprs	NA	0
NZ_CP041104	Klebsiella pneumoniae subsp. pneumoniae strain KPCTRSRTH07 plasmid unnamed5, complete sequence	0 crisprs	NA	1
NZ_CP041106	Klebsiella pneumoniae subsp. pneumoniae strain KPCTRSRTH07 plasmid unnamed7, complete sequence	0 crisprs	NA	0
NZ_CP041102	Klebsiella pneumoniae subsp. pneumoniae strain KPCTRSRTH07 plasmid unnamed3, complete sequence	0 crisprs	NA	1

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 78745

Salmonella_phage(87.5%)

portal,integrase,tail,terminase

attL 10001:10017|attR 42109:42125

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064406296.1\|0_1098_+	RepB family plasmid replication initiator protein	J9Q7H0	Salmonella_phage	1.9e-74	52.9
WP_014342074.1\|1549_1762_-	hypothetical protein	J9Q7S8	Salmonella_phage	4.3e-28	80.0
WP_032423093.1\|1761_2097_-	hypothetical protein	J9Q7Z5	Salmonella_phage	4.7e-37	66.7
WP_032423094.1\|2093_2273_-	hypothetical protein	NA	NA	NA	NA
WP_094327224.1\|2806_5149_-	recombinase RecA	J9Q736	Salmonella_phage	1.5e-28	85.1
WP_094327225.1\|5151_5418_-	hypothetical protein	J9Q7G8	Salmonella_phage	8.6e-34	83.0
WP_021313784.1\|5417_6362_-	exonuclease	J9Q7S6	Salmonella_phage	2.8e-172	93.6
WP_042935032.1\|6422_7430_-	hypothetical protein	J9Q7Z3	Salmonella_phage	2.3e-143	87.6
WP_064164595.1\|7549_7981_-	hypothetical protein	J9Q6I8	Salmonella_phage	1.4e-65	91.6
WP_021313787.1\|8128_8428_-	hypothetical protein	NA	NA	NA	NA
WP_021313788.1\|8438_8858_-	hypothetical protein	A0A291AWZ9	Escherichia_phage	6.3e-47	62.6
WP_065801538.1\|9058_9502_-	hypothetical protein	J9Q7S4	Salmonella_phage	2.0e-59	83.7
WP_094327226.1\|9498_10668_-	uracil-DNA glycosylase	J9Q7Z2	Salmonella_phage	6.8e-208	92.5
10001:10017	attL	NA	NA	NA	NA
WP_077264559.1\|10689_11391_-	hypothetical protein	S5YLC4	Mycobacterium_phage	7.6e-21	37.6
WP_074394549.1\|11387_13751_-	DNA polymerase III subunit alpha	J9Q7Z2	Salmonella_phage	0.0e+00	87.2
WP_071994325.1\|13725_13929_-	hypothetical protein	J9Q6I7	Salmonella_phage	3.3e-25	80.6
WP_094327227.1\|13931_15164_-	AAA domain-containing protein	J9Q733	Salmonella_phage	2.2e-212	86.4
WP_094327228.1\|15260_17540_-	porphyrin biosynthesis protein	J9Q7G6	Salmonella_phage	1.2e-248	66.1
WP_014342091.1\|18142_18523_+	transcriptional regulator	NA	NA	NA	NA
WP_032414134.1\|18517_19618_-\|integrase	site-specific integrase	A0A1P8DTG6	Proteus_phage	9.4e-18	30.0
WP_023279484.1\|19967_20327_+	hypothetical protein	NA	NA	NA	NA
WP_021313794.1\|20391_20802_-	toxin YafO	NA	NA	NA	NA
WP_040203500.1\|20811_21429_-	hypothetical protein	NA	NA	NA	NA
WP_032440523.1\|21523_21769_-	GrxA family glutaredoxin	A0A2I7SAE2	Vibrio_phage	9.1e-14	47.4
WP_040170138.1\|21765_22152_-	phage family protein	Q716B1	Shigella_phage	4.9e-46	72.0
WP_072042131.1\|22161_22974_-	phosphate starvation-inducible protein PhoH	W8D063	Erwinia_phage	8.1e-91	66.1
WP_064147380.1\|24247_24547_-	hypothetical protein	J9Q7S1	Salmonella_phage	4.6e-28	65.3
WP_021313107.1\|24543_24696_-	hypothetical protein	J9Q7Z1	Salmonella_phage	1.6e-16	82.0
WP_065801541.1\|24940_25408_-	hypothetical protein	J9Q7R9	Salmonella_phage	2.8e-48	62.7
WP_065801213.1\|25487_26276_-	hypothetical protein	J9Q7Z0	Salmonella_phage	2.9e-69	50.4
WP_064163031.1\|26396_27512_-	hypothetical protein	J9Q720	Salmonella_phage	6.3e-203	91.3
WP_004110189.1\|27664_29005_-	AAA family ATPase	J9Q7G4	Salmonella_phage	1.6e-240	95.7
WP_023279420.1\|29069_29795_-	hypothetical protein	J9Q7R8	Salmonella_phage	2.5e-128	88.8
WP_040177234.1\|30088_31147_+	hypothetical protein	A0A2I7RNF6	Vibrio_phage	2.3e-61	42.2
WP_019704530.1\|31206_31569_-	hypothetical protein	J9Q7G3	Salmonella_phage	1.5e-44	97.9
WP_021313115.1\|31568_32234_-	AAA family ATPase	J9Q7R7	Salmonella_phage	2.9e-102	83.7
WP_032734134.1\|32418_33168_-	hypothetical protein	J9Q7Y8	Salmonella_phage	1.6e-16	31.3
WP_032734133.1\|33152_33545_-	hypothetical protein	A0A077SLR3	Escherichia_phage	1.0e-14	42.2
WP_048268827.1\|33819_34011_-	hypothetical protein	J9Q7G2	Salmonella_phage	2.3e-17	66.7
WP_040203611.1\|33961_34213_-	hypothetical protein	J9Q7R6	Salmonella_phage	4.5e-24	73.5
WP_040203608.1\|34215_34908_-	membrane protein	J9Q7Y7	Salmonella_phage	3.9e-118	88.3
WP_004109805.1\|34921_35245_-	hypothetical protein	J9Q6E7	Salmonella_phage	2.3e-49	95.3
WP_094307645.1\|35335_36781_-\|tail	tail fiber domain-containing protein	A0A0H4TGH1	Klebsiella_phage	1.0e-40	38.6
WP_143995081.1\|36903_49038_-	DUF1983 domain-containing protein	J9Q713	Salmonella_phage	3.1e-29	60.7
42109:42125	attR	NA	NA	NA	NA
WP_021313122.1\|49054_49666_-\|tail	tail assembly protein	J9Q7F8	Salmonella_phage	4.5e-78	73.9
WP_004109817.1\|49653_50451_-\|tail	tail protein	J9Q7R4	Salmonella_phage	5.4e-140	85.3
WP_004109820.1\|50443_51142_-\|tail	phage minor tail protein L	J9Q7Y5	Salmonella_phage	1.2e-122	87.4
WP_004109823.1\|51228_51564_-\|tail	tail protein	J9Q6E1	Salmonella_phage	3.4e-51	84.5
WP_021313123.1\|51607_56152_-	tape measure protein	J9Q712	Salmonella_phage	0.0e+00	67.5
WP_004109830.1\|56159_56393_-	hypothetical protein	J9Q7F7	Salmonella_phage	3.4e-34	93.5
WP_021313124.1\|56509_56827_-	hypothetical protein	J9Q7R3	Salmonella_phage	2.4e-46	92.4
WP_004109839.1\|56888_57635_-	Ig domain-containing protein	J9Q7Y4	Salmonella_phage	3.7e-106	83.0
WP_021313125.1\|57702_58095_-	hypothetical protein	J9Q6D8	Salmonella_phage	1.0e-46	67.5
WP_021313126.1\|58096_58570_-	hypothetical protein	J9Q711	Salmonella_phage	1.9e-76	93.6
WP_021313127.1\|58560_58905_-	hypothetical protein	J9Q7F6	Salmonella_phage	2.2e-53	92.1
WP_021313128.1\|59002_59836_-	hypothetical protein	J9Q7R2	Salmonella_phage	4.8e-131	83.4
WP_021313129.1\|59835_60270_-	hypothetical protein	J9Q7Y3	Salmonella_phage	2.9e-63	84.0
WP_021313130.1\|60317_60746_-	Ig domain-containing protein	J9Q6D6	Salmonella_phage	6.0e-29	82.4
WP_004109857.1\|60824_61703_-	hypothetical protein	J9Q710	Salmonella_phage	4.7e-153	94.2
WP_014342135.1\|61729_62629_-	hypothetical protein	J9Q7F4	Salmonella_phage	1.0e-123	82.6
WP_094327241.1\|62651_64241_-\|portal	phage portal protein	J9Q7R1	Salmonella_phage	1.5e-274	88.5
WP_004109863.1\|64258_65515_-\|terminase	terminase	J9Q7Y2	Salmonella_phage	9.4e-248	97.4
WP_004109866.1\|65517_66159_-	DNA-binding protein	J9Q6D4	Salmonella_phage	5.0e-96	88.2
WP_004109869.1\|66334_66601_-	hypothetical protein	J9Q757	Salmonella_phage	1.3e-37	90.9
WP_026005938.1\|66610_67510_-	hypothetical protein	J9Q7I6	Salmonella_phage	4.2e-165	97.0
WP_019704585.1\|67506_67761_-	hypothetical protein	J9Q7U0	Salmonella_phage	2.0e-40	96.4
WP_019704584.1\|67753_68392_-	ATP-binding cassette domain-containing protein	J9Q807	Salmonella_phage	1.4e-109	97.6
WP_094327240.1\|68388_69057_-	ParB N-terminal domain-containing protein	J9Q6L1	Salmonella_phage	1.9e-106	91.0
WP_021313132.1\|69056_69737_-	ParB N-terminal domain-containing protein	J9Q756	Salmonella_phage	2.1e-108	89.3
WP_094310216.1\|69820_71380_+	DEAD/DEAH box helicase	J9Q7I4	Salmonella_phage	3.4e-279	92.7
WP_021313134.1\|71382_71661_+	hypothetical protein	J9Q7T9	Salmonella_phage	6.2e-27	70.3
WP_126066599.1\|71722_72262_+	hypothetical protein	NA	NA	NA	NA
WP_126066598.1\|72408_73008_+	hypothetical protein	NA	NA	NA	NA
WP_021313136.1\|73032_73389_+	hypothetical protein	NA	NA	NA	NA
WP_021313137.1\|73438_73969_+	transcriptional regulator	J9Q6L0	Salmonella_phage	2.5e-56	69.6
WP_032440491.1\|74285_74936_+	hypothetical protein	J9Q754	Salmonella_phage	1.9e-106	91.7
WP_021313139.1\|74983_75214_+	hypothetical protein	NA	NA	NA	NA
WP_021313140.1\|75851_76334_-	hypothetical protein	J9Q805	Salmonella_phage	1.3e-64	70.6
WP_021313141.1\|76539_76821_-	ABC transporter	J9Q753	Salmonella_phage	2.4e-42	84.9
WP_021313142.1\|76823_77198_-	hypothetical protein	NA	NA	NA	NA
WP_004109918.1\|77326_77734_-	hypothetical protein	NA	NA	NA	NA
WP_004109921.1\|77853_78165_-	hypothetical protein	J9Q7T7	Salmonella_phage	3.6e-31	68.0
WP_029463946.1\|78301_78514_-	hypothetical protein	J9Q804	Salmonella_phage	1.3e-24	76.5
WP_019704577.1\|78526_78745_-	hypothetical protein	J9Q6K7	Salmonella_phage	2.9e-27	81.9

DBSCAN-SWA_2

82692 : 111013

Salmonella_phage(82.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_094327238.1\|82692_84249_+	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	1.3e-105	42.7
WP_094327237.1\|84245_85370_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_094327217.1\|86661_89778_+	HsdR family type I site-specific deoxyribonuclease	A0A220A398	Liberibacter_phage	6.0e-25	23.8
WP_048269908.1\|89839_90055_-	hypothetical protein	J9Q747	Salmonella_phage	2.9e-16	73.6
WP_021313149.1\|90183_90762_-	hypothetical protein	J9Q7H6	Salmonella_phage	3.0e-55	57.0
WP_014342167.1\|90889_91045_-	DUF3927 domain-containing protein	H6WZJ7	Escherichia_phage	1.7e-05	61.2
WP_019704567.1\|91044_91470_-	tellurite/colicin resistance protein	Q71TK7	Escherichia_phage	9.8e-56	80.9
WP_032414138.1\|91572_91761_-	hypothetical protein	J9Q800	Salmonella_phage	3.3e-08	52.5
WP_094327218.1\|91757_92036_-	hypothetical protein	NA	NA	NA	NA
WP_032440503.1\|92462_93056_-	ribonuclease HI	J9Q745	Salmonella_phage	1.0e-90	80.1
WP_094327219.1\|93629_93863_-	hypothetical protein	J9Q7H5	Salmonella_phage	1.0e-30	81.6
WP_065811697.1\|94060_94654_-	phage N-6-adenine-methyltransferase	J9Q7T2	Salmonella_phage	3.4e-99	85.3
WP_032440505.1\|94838_95672_-	hypothetical protein	J9Q7Z9	Salmonella_phage	1.3e-64	56.7
WP_032423056.1\|95797_96346_-	3'-5' exonuclease	J9Q6J8	Salmonella_phage	3.2e-75	74.4
WP_050485941.1\|96342_96924_-	hypothetical protein	A0A1B0VMI8	Pseudomonas_phage	4.2e-33	50.4
WP_048333489.1\|97146_97566_-	hypothetical protein	J9Q743	Salmonella_phage	3.8e-52	74.1
WP_023279503.1\|97629_98274_-	AAA family ATPase	J9Q7H4	Salmonella_phage	4.7e-94	77.6
WP_032440507.1\|98273_98750_-	dihydrofolate reductase	J9Q7T1	Salmonella_phage	4.9e-72	79.6
WP_023279501.1\|98746_99160_-	hypothetical protein	J9Q7Z8	Salmonella_phage	4.7e-55	77.4
WP_094327220.1\|99161_100265_-	thymidylate synthase	J9Q6J6	Salmonella_phage	3.9e-181	80.1
WP_048333493.1\|100458_101334_-	nucleoside triphosphate pyrophosphohydrolase family protein	J9Q742	Salmonella_phage	5.9e-140	84.7
WP_094327221.1\|101411_102554_-	ribonucleotide-diphosphate reductase subunit beta	J9Q7H3	Salmonella_phage	4.4e-212	95.5
WP_094327222.1\|102684_104988_-	ribonucleoside-diphosphate reductase subunit alpha	J9Q7T0	Salmonella_phage	0.0e+00	91.1
WP_021313773.1\|105063_105633_-	hypothetical protein	J9Q7Z7	Salmonella_phage	1.1e-94	89.9
WP_023279497.1\|105642_106389_-	hypothetical protein	J9Q6J5	Salmonella_phage	2.9e-79	61.7
WP_094327223.1\|106378_108295_-	AAA family ATPase	J9Q741	Salmonella_phage	1.6e-299	84.5
WP_072196416.1\|108291_108525_-	hypothetical protein	J9Q7H1	Salmonella_phage	4.4e-18	66.1
WP_021313776.1\|108524_109610_-	exonuclease	J9Q7S9	Salmonella_phage	1.1e-183	84.8
WP_021313777.1\|109798_110293_-	GNAT family N-acetyltransferase	J9Q6J3	Salmonella_phage	1.0e-59	67.1
WP_023279495.1\|110368_111013_-	hypothetical protein	J9Q739	Salmonella_phage	2.2e-99	80.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP041099

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP041099_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041099_1

4154111-4154239

Orphan

Consensus_repeat	Method
TGCCGGGTGGCAGCTGGCGCCTTACCCGGCCTACAAAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041099_1

>merge|NZ_CP041099|1|4154111-4154239|CRISPRCasFinder
TGCCGGGTGGCAGCTGGCGCCTTACCCGGCCTACAAAACCGAAGCAGCAGCCCCGGCAAGCGCAGCGCCGCCGGGCACGGAGCCGCTTTATGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAAC

>NZ_CP041099|1|1|4154111-4154239|CRISPRCasFinder
TGCCGGGTGGCAGCTGGCGCCTTACCCGGCCTACAAAAC	CGAAGCAGCAGCCCCGGCAAGCGCAGCGCCGCCGGGCACGGAGCCGCTTTA
TGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041099.1\|WP_032416706.1\|4143845_4145129_+\|4-aminobutyrate--2-oxoglutarate-transaminase	unknown	unknown	gnl\|CDD\|236149
NZ_CP041099.1\|WP_060656910.1\|4156334_4156973_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D	unknown	unknown	gnl\|CDD\|236457
NZ_CP041099.1\|WP_004145825.1\|4162302_4162884_-\|D-sedoheptulose-7-phosphate-isomerase	unknown	unknown	gnl\|CDD\|179012
NZ_CP041099.1\|WP_002889722.1\|4154277_4154493_-\|(Na+)-NQR-maturation-NqrM	unknown	unknown	gnl\|CDD\|225538
NZ_CP041099.1\|WP_002889726.1\|4151979_4153035_-\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
NZ_CP041099.1\|WP_002889720.1\|4154495_4155719_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F	unknown	unknown	gnl\|CDD\|235481
NZ_CP041099.1\|WP_002889742.1\|4147958_4149203_-\|esterase-FrsA	unknown	unknown	gnl\|CDD\|235337
NZ_CP041099.1\|WP_004177334.1\|4153194_4154055_+\|glycerophosphoryl-diester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176522
NZ_CP041099.1\|WP_002889795.1\|4145278_4146679_+\|GABA-permease	unknown	unknown	gnl\|CDD\|182297
NZ_CP041099.1\|WP_002889733.1\|4149308_4149767_-\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236395
NZ_CP041099.1\|WP_002889702.1\|4158994_4160338_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-A	unknown	unknown	gnl\|CDD\|235426
NZ_CP041099.1\|WP_004177332.1\|4147502_4147901_-\|sigma-factor-binding-protein-Crl	unknown	unknown	gnl\|CDD\|182882
NZ_CP041099.1\|WP_002889727.1\|4151524_4151977_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|182099
NZ_CP041099.1\|WP_004177331.1\|4146724_4147417_+\|DNA-binding-transcriptional-regulator-CsiR	unknown	unknown	gnl\|CDD\|183181
NZ_CP041099.1\|WP_004152033.1\|4150024_4151482_+\|cytosol-nonspecific-dipeptidase	unknown	unknown	gnl\|CDD\|184986
NZ_CP041099.1\|WP_002889696.1\|4161460_4162228_-\|class-II-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|372525
NZ_CP041099.1\|WP_002889699.1\|4160749_4161490_+\|murein-L,D-transpeptidase	unknown	unknown	gnl\|CDD\|225577
NZ_CP041099.1\|WP_060612934.1\|4157752_4158991_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B	unknown	unknown	gnl\|CDD\|235425
NZ_CP041099.1\|WP_004191877.1\|4156965_4157760_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-C	unknown	unknown	gnl\|CDD\|235423
NZ_CP041099.1\|WP_004177335.1\|4155731_4156328_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E	unknown	unknown	gnl\|CDD\|235074

Protein	Function_ID	Function_description	E-value
NZ_CP041099.1\|WP_032416706.1\|4143845_4145129_+\|4-aminobutyrate--2-oxoglutarate-transaminase	gnl\|CDD\|236149	PRK08088, PRK08088, 4-aminobutyrate--2-oxoglutarate transaminase.	0
NZ_CP041099.1\|WP_060656910.1\|4156334_4156973_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D	gnl\|CDD\|236457	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated.	9.27315e-142
NZ_CP041099.1\|WP_004145825.1\|4162302_4162884_-\|D-sedoheptulose-7-phosphate-isomerase	gnl\|CDD\|179012	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase.	2.35176e-148
NZ_CP041099.1\|WP_002889722.1\|4154277_4154493_-\|(Na+)-NQR-maturation-NqrM	gnl\|CDD\|225538	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown].	5.41902e-29
NZ_CP041099.1\|WP_002889726.1\|4151979_4153035_-\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
NZ_CP041099.1\|WP_002889720.1\|4154495_4155719_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F	gnl\|CDD\|235481	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional.	0
NZ_CP041099.1\|WP_002889742.1\|4147958_4149203_-\|esterase-FrsA	gnl\|CDD\|235337	PRK05077, frsA, esterase FrsA.	0
NZ_CP041099.1\|WP_004177334.1\|4153194_4154055_+\|glycerophosphoryl-diester-phosphodiesterase	gnl\|CDD\|176522	cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.	1.90819e-128
NZ_CP041099.1\|WP_002889795.1\|4145278_4146679_+\|GABA-permease	gnl\|CDD\|182297	PRK10197, PRK10197, GABA permease.	0
NZ_CP041099.1\|WP_002889733.1\|4149308_4149767_-\|xanthine-phosphoribosyltransferase	gnl\|CDD\|236395	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated.	2.19173e-113
NZ_CP041099.1\|WP_002889702.1\|4158994_4160338_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-A	gnl\|CDD\|235426	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional.	0
NZ_CP041099.1\|WP_004177332.1\|4147502_4147901_-\|sigma-factor-binding-protein-Crl	gnl\|CDD\|182882	PRK10984, PRK10984, sigma factor-binding protein Crl.	3.74492e-83
NZ_CP041099.1\|WP_002889727.1\|4151524_4151977_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|182099	PRK09831, PRK09831, GNAT family N-acetyltransferase.	3.92264e-85
NZ_CP041099.1\|WP_004177331.1\|4146724_4147417_+\|DNA-binding-transcriptional-regulator-CsiR	gnl\|CDD\|183181	PRK11534, PRK11534, DNA-binding transcriptional regulator CsiR; Provisional.	3.98097e-151
NZ_CP041099.1\|WP_004152033.1\|4150024_4151482_+\|cytosol-nonspecific-dipeptidase	gnl\|CDD\|184986	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional.	0
NZ_CP041099.1\|WP_002889696.1\|4161460_4162228_-\|class-II-glutamine-amidotransferase	gnl\|CDD\|372525	pfam13230, GATase_4, Glutamine amidotransferases class-II. This family captures members that are not found in pfam00310.	1.08772e-144
NZ_CP041099.1\|WP_002889699.1\|4160749_4161490_+\|murein-L,D-transpeptidase	gnl\|CDD\|225577	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown].	1.01465e-109
NZ_CP041099.1\|WP_060612934.1\|4157752_4158991_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B	gnl\|CDD\|235425	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional.	0
NZ_CP041099.1\|WP_004191877.1\|4156965_4157760_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-C	gnl\|CDD\|235423	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional.	1.16359e-153
NZ_CP041099.1\|WP_004177335.1\|4155731_4156328_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E	gnl\|CDD\|235074	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional.	4.25239e-127

>NZ_CP041099.1|WP_004177334.1|4153194_4154055_+|glycerophosphoryl-diester-phosphodiesterase
MKKILTALCLLATAGAWAAPQLIAHRGGTGDAPENTLPAIKLALENNAEAIWVTVQLSRDGVPVLYRSSDLSALTNSEGKVSSLTAAELAKVDAGWKWGDDSHPWRGKQATIPTLQSVLQQWPHTFFYIDIKSPDADPTVMGQRLLEVLKTTDSLDRVRVYSTEDRYIAALPPAIPRFVTRSETRTRLANISLSHQCQPASQRDGEQWYGLELKRKVEVVEKFTLGEGISPATLTWDKEAMDCFRSQDKAHIIFFGINSAEDYRMAIELGADGVMVDSPAQAKSWQ
>NZ_CP041099.1|WP_002889726.1|4151979_4153035_-|DNA-polymerase-IV
MRKIIHVDMDCFFAAVEMRDNPALRDIPLAIGGSRVQRGVISTANYPARKFGVRSAMPTATALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVSDSEHCHGSATLIAQEIRQTIERELRLTASAGVAPVKFLAKIASDMNKPNGQFVIAPHQVAEFVRALPLAKIPGVGKVSAAKLENMGLRTCGDVQNSDLAMLLKRFGKFGRILWERSHGIDEREIHNDRQRKSVGVERTLAEDIHEWPECEAIIENLYPELERRLAKVKPDLLIARQGIKLKFNDFQLTTQEHVWPRLNKEDLIATAHKAWDERRGGRGVRLVGLHVTLLDPQLERQLLLGI
>NZ_CP041099.1|WP_002889727.1|4151524_4151977_-|GNAT-family-N-acetyltransferase
MHIRAYRDSDLPLLCQIFLRAVRETASRDYTPGQIAAWAQVDETRWRQKLADSIGLVAVVNSQPVGFITAIGTHIDLLFVSPDRARQGIGGALIEALCVQYPAQILTVDASITAKPCFTAHGFKVVAEQRVAARGEWFINYRMEKRVALR
>NZ_CP041099.1|WP_004152033.1|4150024_4151482_+|cytosol-nonspecific-dipeptidase
MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEHIMGWAKEKGLHAERDQVGNILIRKGATAGMENRKPVALQAHLDMVPQKNNDTVHDFVKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVLADDSVAHGPLEVLLTMTEEAGMDGAFGLQANWLQADILINTDSEEEGEIYMGCAGGIDFTSNLALTREAIPAGFQSFKVTLKGLKGGHSGGDIHLGLGNANKLLSRFLAGHADELDLRLVDFNGGTLRNAIPREAYATVAVAADKADALKALVNTYQALLKNELEAKEKNLVVLVEAVDNDKAALTQASRDTFIRLLNATPNGVIRNSDVAKGVVETSLNVGVVTMTDDNVQIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEAKGAYPGWQPDANSPVMHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPYPEMDMVSIGPTITGPHSPDEQVHIESVGQYWTLLTELLKAIPAK
>NZ_CP041099.1|WP_002889733.1|4149308_4149767_-|xanthine-phosphoribosyltransferase
MSEKYVVTWDMLQIHARKLASRLLPVEQWKGIIAVSRGGLVPGALLARELGIRHVDTVCISSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIREMYPKAHFVTIFAKPAGRPLVDDYVVDIPQDTWIEQPWDMGVVFVPPIAGR
>NZ_CP041099.1|WP_002889742.1|4147958_4149203_-|esterase-FrsA
MSQANLSETLFKPRFKHPETSTLVRRFSAGKPQAMQSALSGNHVDHWYRLINRLMWIWRGVTPQEILDVQARIVMSEAERTDPELFDTVIGYRGGNWIFEWAKEAMQWQQKAGQEADPLLSGRHWLHASNLYSIAAYPHIKGDELAEQAQALANRAYEEAAQRLPGSLRELEFTIPGGSPITGFLHMPKGEGPFPTVLMCGGLDSLQTDYYNLYENYFSPLGIAMLTIDMPSIGFSSKWTLNQDTSLLHQHALRHLENVPWIDHTRVAAFGFRFGANIAVRLGYLEPQRLKAVACLGPVVHGLLVDPLHQGRVPEMYLDVLASRLGMHDASDEALRVELNRYSLKTQGLLGRRCPTPMLSGFWKDDPFSPEEESRLITSSSADGKLLEIPFNPVYRNFDHALRQIARWINHRFG
>NZ_CP041099.1|WP_004177332.1|4147502_4147901_-|sigma-factor-binding-protein-Crl
MTLPSGHLKSKLIKKFTALGPYIREEQCHDNRFFFDCLAVCVNVKPAPEKREFWGWWMEMEAQESRFTYSYQFGLFNKEGSWQAVDIGDPEVSDRLEKTLREFHERAAALLTTFNLKLEPADDFSEPVRLRA
>NZ_CP041099.1|WP_004177331.1|4146724_4147417_+|DNA-binding-transcriptional-regulator-CsiR
MTAIPQATAIDGYRWLKNDIIRGVYHPDEKLRMSLLTSRYGLGVGPLREALSQLVAERLVTVVNQKGYRVAPMSEQELLDIFDARANMEAMLVRLAIERGGDEWEAELLARTHLLNKLESCEASEHLLDEWDQRHQAFHTAIVAGCGSQYLLQMRERLFDLAARYRFIWLRTTVLSVEMLEDKHVQHQTLVDAILARDAEQASALMREHLLTPIPIIQQAMAGKLSPQAG
>NZ_CP041099.1|WP_002889795.1|4145278_4146679_+|GABA-permease
MGQLSQSQDLGAGLKSRHVTMLSIAGVIGASLFVGSSVAIAEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWFWVLVIPLEANIAAIILHSWVPGVPVWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIVLGAVAITGFYPYAEVSGISRLWDHGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPDKHIVRATNSVIWRISIFYLCSIFIVVALIPWNMPGLKSIGSYRSVLELLHIPYAKLIMDGVILLSVTSCLNSALYTASRMLYSLSRRGDAPAIMGRTNRSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKILQAQGGEIRLRMWLYPYLTWLVIAFITFVLVVMLFRPAQQLEVISTGLLALGIICTVPIMSRWKKLVLWQKLPLQNTR
>NZ_CP041099.1|WP_032416706.1|4143845_4145129_+|4-aminobutyrate--2-oxoglutarate-transaminase
MNSNRAMMARRSDAVPRGVGQIHPIFAERAENCRVWDVEGREYLDFAGGIAVLNTGHLHPQVVAAVEDQLKKLSHTCFQVLAYEPYLALCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATGRSGAIAFTGAYHGRTHYTLSLTGKVNPYSAGMGLMPGHVYRALYPCALHGVSDDEAIASIHRIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAADITTFAKSIAGGFPLAGVTGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLQIFEQENLLEKANQLGDTLRQGLLAIAEDHPEIGDVRGLGAMIAIELFEEGDRSRPNARLTADIVARARDKGLILLSCGPYYNVLRILVPLTIEEAQIEQGLKIIADCFSEAKQA
>NZ_CP041099.1|WP_002889722.1|4154277_4154493_-|(Na+)-NQR-maturation-NqrM
MLTVFIATFVIFALVILGMSLGYLVKRKSIQGSCGGISALGLEKVCDCPEPCDARKKRLAREAQRQQRRIL
>NZ_CP041099.1|WP_002889720.1|4154495_4155719_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F
MEIILGVVMFTLIVLVLSGLILAARSKLVNAGDVVIEINNEADKQIRTPAGDKLLNTLSSNGIFVSSACGGGGSCGQCRVTVKEGGGDILPTELSHITKRDAKAGCRLACQVAVKQNMKIELPEEIFGVKKWECEVISNDNKATFIKELKLRIPEGEVVPFRAGGYIQIECPPHKVAYADFDVPDEYRSDWDKFNLFRYVSEVKEPTLRAYSMANYPEEKGIIMLNVRIATPPPKVPDAPPGIMSSYIWSLKPGDKVTISGPFGEFFAKETDAEMVFIGGGAGMAPMRSHIFDQLKRLHSTRKISFWYGARSLREMFYDEEFEQLARDNPNFTFHVALSDPLPEDNWTGHTGFIHNVLYENYLRDHPAPEDCEFYMCGPPVMNAAVIKMLKDLGVEDENILLDDFGG
>NZ_CP041099.1|WP_004177335.1|4155731_4156328_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E
MAHYISLFVRAVFVENMALAFFLGMCTFLAVSKKVSTAFGLGVAVTVVLGLAVPINNLVYNLVLRDGALVEGVDLSFLNFITFIGVIAALVQILEMILDKYFPALYNALGIFLPLIAVNCAIFGGVSFMVQRDYNFPESIVYGFGSGIGWMLAIVAMAGIREKMKYANVPAGLRGLGITFITTGLMALGFMSFSGVQL
>NZ_CP041099.1|WP_060656910.1|4156334_4156973_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D
MAEQSDIKEVKRVLVGPLIANNPIALQVLGVCSALAVTTKLETAFVMTIAVTLVTAFSSMFISMIRHHIPNSVRIIVQMAIIASLVIVVDQLLRAFAYETSKQLSVFVGLIITNCIVMGRAEAYAMKSPPLASFMDGIGNGLGYGAILIIVGFLRELIGSGKLFGITVLETVQNGGWYQPNGLFLLAPSAFFIIGLLIWALRSWKPEQQEKE
>NZ_CP041099.1|WP_004191877.1|4156965_4157760_-|Na(+)-translocating-NADH-quinone-reductase-subunit-C
MAEKKSNDSIGKTLLVVLVLCLVCSIVVAGSAVGLKSRQQAQRALDKQRNILAVSGLMHPDMDADAVADTFAARITPRLVNLATGELLEKDPGKFNQAQALKDPQQSMALDASQDPAGIKRRSNLAEIYLVRDAQQKIEQVVLPIYGNGLWSMMYAFVALDVDGRTVKGITYYDQGETPGLGGEVENPNWRQQFVGKQVLDDNGMPALKVVKGGARAGDLHAVDGLSGATLTSNGVQHSFDFWMGELGFGPFLKKVREGELNNG
>NZ_CP041099.1|WP_060612934.1|4157752_4158991_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B
MGLKHLIEKLEPHFTHGGKLEKYYPLYEAAATIFYTPGQVTRGAAHVRDAIDLKRMMILVWFAVFPAMFWGMYNVGLQTIPALHKLYGTEQLQQTIANNWHYSVAQWLGVSFSADAGWLSMMTLGAVFFLPIYLTVFIVGGFWEVLFAIVRKHEINEGFFVTSILFALIVPPTLPLWQAALGISFGVVIAKEIFGGTGRNFLNPALAGRAFLFFAYPAQISGDLVWTAADGFSGATPLSQWASGGGEALVNVATGVPVSWMDAFLGNIPGSIGEVSTLMIFIGGAIILFGRVASWRIVAGVMIGMIATATLFNVIGSDTNPMFAMPWYWHLVLGGFAFGMMFMATDPVSASFTDKGKWSYGVLIGVMCVLIRVVNPAYPEGMMLAILFANLFAPLFDYLVVQANIKRRKSRG
>NZ_CP041099.1|WP_002889702.1|4158994_4160338_-|Na(+)-translocating-NADH-quinone-reductase-subunit-A
MIKITKGLDLPIAGMPLQQISPAPAVKRVALLGEEYVGMRPAMAVKEGDRVKKGQILFEDKKIPGVCFTAPASGIVSAIHRGERRVLQSVVIDIEGNDAVAFTRYAADALAELPRDTVQQQLLASGQWTALRTRPFSKTPLPGSTPAAIFVNAMDTNPLAAEPQPIILAERAAFDAGLTVLTRLTDGKVHVCQPSGGKLGGHPLGQVCFNQFSGPHPAGLPGTHIHFLEPVSLNKQVWHLNYQDAIAIGKLFLDGELYCERIIALGGPQVTSPRLVKTTLGASLEDLLAGELQEGENRVISGSVLSGARAHGPHAFLGRFHLQVSVVKEGREKELFGWVMPGKEKFSITRTTLGHFFKRKRFHFSTDTNGGERAMVPIGNYERVMPLDILPTILLRDLLAGDTDSAQALGCLELDEEDLALCTYVCPGKYEYGPALRSVLTRIEQEG
>NZ_CP041099.1|WP_002889699.1|4160749_4161490_+|murein-L,D-transpeptidase
MRKIALFIAMLLLPCVSFAGLLSSNSPTTPVSKEYKQQLMGSPVYIEIFKEERMLDLYVKMGETYQLLDSYRICNYSGGLGPKQRQGDFKSPEGFYNVTRSQLKPDSRFYKAINIGFPNAYDRAHGYEGKYLMIHGDCVSVGCYAMTDSGIDEIFQFVTGALVFGQPSVQVSIYPFRMTNANMERHKYSYYADFWKQLKPGYDYFQQTHKPPVVSVTDGRYVVSKPLSHEVVQPQLASNYTLPETK
>NZ_CP041099.1|WP_002889696.1|4161460_4162228_-|class-II-glutamine-amidotransferase
MCELLGMSANVPTDICFSFTGLVQRGGGTGPHKDGWGITFYEGKGCRTFKDPQPSFQSPIAKLVQDYPIKSCSVVAHIRQANRGRVALENTHPFTRELWGRNWTYAHNGQLKGYKSLKTGNFHPVGETDSEKAFCWLLHRLTERYPRTPGNMLGVFKYIATLAGELREKGVFNMLLSDGRYVMAFCSTNLHWITRRAPFGVAKLLDQDVEIDFQRETTPNDVVTVIATQPLTANETWHKIMPGEWALFCLGERVV
>NZ_CP041099.1|WP_004145825.1|4162302_4162884_-|D-sedoheptulose-7-phosphate-isomerase
MYQDLIRNELNEAAETLANFLQDEANIHAIQRAAVLLADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHLSCVSNDFGYEYVFSRYVESVGRAGDVLLGISTSGNSGNVIKAIEAARAQGMKVITLTGKDGGKMAGSADVEIRVPHFGYADRIQEIHIKVIHILIMLIEKEMAKG

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Crispr_ID: NZ_CP041099_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041099_2

4371059-4371153

Orphan

Consensus_repeat	Method
ACTATGGTTTTTATGGTTTTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041099_2

>merge|NZ_CP041099|2|4371059-4371153|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATGGTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATGACTGTGGTTTTTATGGTTTTTATT

>NZ_CP041099|2|2|4371059-4371153|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATG	GTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATG
ACTGTGGTTTTTATGGTTTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041099.1\|WP_002888321.1\|4380598_4381447_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|273208
NZ_CP041099.1\|WP_002888324.1\|4379392_4380214_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP041099.1\|WP_060612588.1\|4358457_4360167_+\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
NZ_CP041099.1\|WP_004147026.1\|4374711_4377060_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_CP041099.1\|WP_004178574.1\|4365233_4368140_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP041099.1\|WP_002888320.1\|4381698_4382178_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NZ_CP041099.1\|WP_023343000.1\|4378406_4379396_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP041099.1\|WP_032424064.1\|4372909_4373608_+\|response-regulator	unknown	unknown	gnl\|CDD\|226931
NZ_CP041099.1\|WP_002888340.1\|4371294_4372920_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827
NZ_CP041099.1\|WP_004177424.1\|4360177_4361680_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NZ_CP041099.1\|WP_002888353.1\|4361817_4362513_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
NZ_CP041099.1\|WP_058229150.1\|4368886_4369426_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|163145
NZ_CP041099.1\|WP_002888332.1\|4373640_4374468_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP041099.1\|WP_004145972.1\|4357274_4358120_-\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
NZ_CP041099.1\|WP_060612592.1\|4362688_4365046_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_CP041099.1\|WP_002888323.1\|4380216_4380594_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP041099.1\|WP_002888329.1\|4377114_4378401_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP041099.1\|WP_004145980.1\|4368152_4368812_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_CP041099.1\|WP_002888373.1\|4356378_4357146_-\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP041099.1\|WP_002888345.1\|4369605_4370970_-\|2-hydroxycarboxylate-transporter-family-protein	unknown	unknown	gnl\|CDD\|377030

Protein	Function_ID	Function_description	E-value
NZ_CP041099.1\|WP_002888321.1\|4380598_4381447_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
NZ_CP041099.1\|WP_002888324.1\|4379392_4380214_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
NZ_CP041099.1\|WP_060612588.1\|4358457_4360167_+\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
NZ_CP041099.1\|WP_004147026.1\|4374711_4377060_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_CP041099.1\|WP_004178574.1\|4365233_4368140_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP041099.1\|WP_002888320.1\|4381698_4382178_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.71656e-127
NZ_CP041099.1\|WP_023343000.1\|4378406_4379396_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP041099.1\|WP_032424064.1\|4372909_4373608_+\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	1.50146e-66
NZ_CP041099.1\|WP_002888340.1\|4371294_4372920_+\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	6.55037e-173
NZ_CP041099.1\|WP_004177424.1\|4360177_4361680_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NZ_CP041099.1\|WP_002888353.1\|4361817_4362513_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
NZ_CP041099.1\|WP_058229150.1\|4368886_4369426_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	1.45487e-85
NZ_CP041099.1\|WP_002888332.1\|4373640_4374468_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164
NZ_CP041099.1\|WP_004145972.1\|4357274_4358120_-\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
NZ_CP041099.1\|WP_060612592.1\|4362688_4365046_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_CP041099.1\|WP_002888323.1\|4380216_4380594_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
NZ_CP041099.1\|WP_002888329.1\|4377114_4378401_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NZ_CP041099.1\|WP_004145980.1\|4368152_4368812_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	7.90078e-161
NZ_CP041099.1\|WP_002888373.1\|4356378_4357146_-\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	1.35562e-48
NZ_CP041099.1\|WP_002888345.1\|4369605_4370970_-\|2-hydroxycarboxylate-transporter-family-protein	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169

>NZ_CP041099.1|WP_002888345.1|4369605_4370970_-|2-hydroxycarboxylate-transporter-family-protein
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>NZ_CP041099.1|WP_058229150.1|4368886_4369426_-|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MSVDTPAQAGVNIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>NZ_CP041099.1|WP_004145980.1|4368152_4368812_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVARVWGHPQPAEGLVDLPLICDWPNRPMQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>NZ_CP041099.1|WP_004178574.1|4365233_4368140_+|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESTDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAAIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>NZ_CP041099.1|WP_060612592.1|4362688_4365046_+|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLRDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFNASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIDRRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSDVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPADYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>NZ_CP041099.1|WP_002888353.1|4361817_4362513_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQGIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>NZ_CP041099.1|WP_004177424.1|4360177_4361680_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATAEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>NZ_CP041099.1|WP_060612588.1|4358457_4360167_+|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLPQTVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKESVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGIYEDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSQAALTH
>NZ_CP041099.1|WP_004145972.1|4357274_4358120_-|arabinose-operon-transcriptional-regulator-AraC
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVRDACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>NZ_CP041099.1|WP_002888373.1|4356378_4357146_-|DedA-family-protein
MQALLEHFITQSTVYSLLAVMLVAFLESLALVGLILPGTVMMAGLGALIGGGEVNFWQAWLAGIVGCLLGDWISFWLGWRFKKPLHRWSFMKKNRALLEKTEHALHQHSMITILIGRFVGPTRPLVPMVAGMLDLPVAKFVLPNIIGCLLWPPLYFLPGILAGAAIDIPADENSASFKWLLLGAALLAWLAGWLCWRLWRSAKTSGDRLTRWLPRGRLLWLSPLMVALAATALTFVFRHPLMPVYLAILHKVIAR
>NZ_CP041099.1|WP_002888340.1|4371294_4372920_+|sensor-histidine-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLGLSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEAHDAS
>NZ_CP041099.1|WP_032424064.1|4372909_4373608_+|response-regulator
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHTTPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>NZ_CP041099.1|WP_002888332.1|4373640_4374468_-|co-chaperone-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>NZ_CP041099.1|WP_004147026.1|4374711_4377060_+|LPS-assembly-protein-LptD
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>NZ_CP041099.1|WP_002888329.1|4377114_4378401_+|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>NZ_CP041099.1|WP_023343000.1|4378406_4379396_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDLDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>NZ_CP041099.1|WP_002888324.1|4379392_4380214_+|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>NZ_CP041099.1|WP_002888323.1|4380216_4380594_+|Co2+/Mg2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>NZ_CP041099.1|WP_002888321.1|4380598_4381447_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKPLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>NZ_CP041099.1|WP_002888320.1|4381698_4382178_-|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPGSDDRVQWVSSVEEAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1191444 : 1200891

Enterobacteria_phage(83.33%)

integrase

attL 1186292:1186306|attR 1208405:1208419

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1186292:1186306	attL	NA	NA	NA	NA
WP_048988794.1\|1191444_1193778_-	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	84.4
WP_048988792.1\|1193792_1194113_-	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_021536582.1\|1194109_1194337_-	hypothetical protein	NA	NA	NA	NA
WP_077260242.1\|1194333_1194885_-	ash family protein	Q7M2A7	Enterobacteria_phage	3.0e-33	70.4
WP_094327234.1\|1195697_1196435_+	glycoprotein 3	Q7M2A2	Enterobacteria_phage	2.6e-80	65.7
WP_048988787.1\|1196431_1196677_+	hypothetical protein	Q7M294	Enterobacteria_phage	3.7e-31	77.8
WP_048988786.1\|1196693_1197260_+	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	1.5e-56	63.8
WP_101986838.1\|1197301_1197409_-	acetyl xylan esterase	NA	NA	NA	NA
WP_064152055.1\|1197774_1199667_+	AIPR family protein	NA	NA	NA	NA
WP_048986916.1\|1199703_1200891_-\|integrase	tyrosine-type recombinase/integrase	A0A1B5FPC6	Escherichia_phage	2.4e-107	51.0
1208405:1208419	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1318413 : 1356516

Salmonella_phage(34.88%)

tail,terminase,integrase

attL 1315840:1315855|attR 1343248:1343263

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1315840:1315855	attL	NA	NA	NA	NA
WP_004151980.1\|1318413_1319880_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	1.2e-87	38.7
WP_004151979.1\|1319947_1321525_+	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
WP_064151765.1\|1321716_1322967_+\|integrase	site-specific integrase	A0A1X9TCT6	Enterobacter_phage	6.8e-206	85.1
WP_064151764.1\|1322983_1323175_-	hypothetical protein	NA	NA	NA	NA
WP_064106736.1\|1323171_1323765_-	adenine methylase	T1SA14	Salmonella_phage	3.7e-109	91.4
WP_071556204.1\|1323761_1323920_-	DUF1317 family protein	T1SAR0	Salmonella_phage	5.1e-18	80.8
WP_023339275.1\|1323912_1324206_-	PerC family transcriptional regulator	T1S9J5	Salmonella_phage	8.9e-32	71.1
WP_004144294.1\|1324315_1324564_-	AlpA family phage regulatory protein	A0A0F6TJ45	Escherichia_coli_O157_typing_phage	2.8e-31	78.0
WP_064106735.1\|1324612_1325494_-	recombinase RecT	T1SBJ5	Salmonella_phage	6.8e-136	84.3
WP_064151763.1\|1325490_1326312_-	exodeoxyribonuclease VIII	A0A193GYK2	Enterobacter_phage	6.2e-131	80.6
WP_064151762.1\|1326311_1326596_-	hypothetical protein	B5WZV1	Pseudomonas_phage	2.4e-10	44.0
WP_032439434.1\|1326592_1326892_-	hypothetical protein	A0A0F6R7M4	Escherichia_coli_O157_typing_phage	4.7e-20	54.5
WP_077266622.1\|1326899_1327931_-	hypothetical protein	A0A1B0VN89	Pseudomonas_phage	3.6e-35	51.4
WP_048264076.1\|1328331_1328913_-	helix-turn-helix transcriptional regulator	Q858D7	Salmonella_phage	2.1e-64	64.3
WP_004152538.1\|1329066_1329300_+	hypothetical protein	T1SAR5	Salmonella_phage	9.2e-24	66.2
WP_064151760.1\|1329446_1329656_+	hypothetical protein	A0A193GYW4	Enterobacter_phage	1.4e-26	78.3
WP_040025502.1\|1329655_1330417_+	primosomal protein	A0A193GZ86	Enterobacter_phage	1.6e-136	90.2
WP_032418532.1\|1330413_1331199_+	replication protein	A0A193GYX1	Enterobacter_phage	3.7e-133	87.7
WP_064151759.1\|1331318_1331666_+	DUF1064 domain-containing protein	A0A0F6R8N5	Escherichia_coli_O157_typing_phage	1.7e-50	83.5
WP_064151780.1\|1331858_1332398_+	hypothetical protein	R9TME7	Aeromonas_phage	1.5e-08	41.9
WP_064151758.1\|1332674_1333436_+	ead/Ea22-like family protein	C6ZR30	Salmonella_phage	6.8e-07	65.2
WP_064151757.1\|1333432_1333612_+	hypothetical protein	NA	NA	NA	NA
WP_064151756.1\|1333608_1334352_+	hypothetical protein	K7P7E4	Enterobacteria_phage	3.3e-14	56.6
WP_064151755.1\|1334436_1334676_+	hypothetical protein	G8C7S3	Escherichia_phage	1.9e-08	51.7
WP_064151753.1\|1334904_1335243_+	hypothetical protein	A0A193GYX4	Enterobacter_phage	1.9e-49	88.2
WP_064151779.1\|1335317_1335575_+	hypothetical protein	NA	NA	NA	NA
WP_064151752.1\|1335652_1336237_+\|terminase	terminase small subunit	T1SBI8	Salmonella_phage	1.3e-90	89.1
WP_064151751.1\|1336233_1337709_+	hypothetical protein	Q858H3	Salmonella_phage	1.9e-279	92.5
WP_064151750.1\|1337720_1337993_-	hypothetical protein	NA	NA	NA	NA
WP_064151749.1\|1338078_1338444_-	hypothetical protein	A0A0F6TJP2	Escherichia_coli_O157_typing_phage	5.1e-61	95.9
WP_072310953.1\|1338935_1339124_+	hypothetical protein	NA	NA	NA	NA
WP_004141368.1\|1339143_1339350_+	hypothetical protein	T1SA67	Salmonella_phage	4.8e-08	88.2
WP_064151748.1\|1339364_1341047_+\|tail	phage tail protein	A0A0F6TJD8	Escherichia_coli_O157_typing_phage	2.5e-264	84.4
WP_042632452.1\|1341043_1341340_+	hypothetical protein	T1SBI9	Salmonella_phage	9.6e-34	70.4
WP_064151747.1\|1341342_1342032_+	peptidase	G9L6C4	Escherichia_phage	2.9e-65	69.6
WP_064151746.1\|1342046_1343033_+	hypothetical protein	A0A193GZ49	Enterobacter_phage	3.3e-179	93.6
WP_020953461.1\|1343086_1343524_+	hypothetical protein	A0A193GYT9	Enterobacter_phage	1.3e-66	91.7
1343248:1343263	attR	NA	NA	NA	NA
WP_064151745.1\|1343534_1343876_+	hypothetical protein	G9L6C7	Escherichia_phage	1.1e-36	71.9
WP_004152441.1\|1343926_1344250_+	hypothetical protein	G9L6C8	Escherichia_phage	5.3e-46	85.0
WP_064151744.1\|1344249_1344855_+	hypothetical protein	A0A0F6TJN5	Escherichia_coli_O157_typing_phage	3.3e-89	79.0
WP_064151743.1\|1344854_1347332_+	hypothetical protein	Q858G3	Salmonella_phage	0.0e+00	84.2
WP_004152438.1\|1347331_1347796_+	hypothetical protein	Q858G2	Salmonella_phage	1.5e-70	81.2
WP_064151742.1\|1347795_1348335_+	hypothetical protein	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	3.0e-70	79.4
WP_064151741.1\|1348345_1351159_+	hypothetical protein	T1SBJ1	Salmonella_phage	0.0e+00	93.3
WP_064151740.1\|1351155_1352961_+	hypothetical protein	A0A0F6TJQ3	Escherichia_coli_O157_typing_phage	1.7e-237	73.3
WP_064106698.1\|1352964_1355439_+	hypothetical protein	A0A0F6TK45	Escherichia_coli_O157_typing_phage	0.0e+00	87.0
WP_004200533.1\|1355637_1355934_+	hypothetical protein	A0A2R9YJP3	Escherichia_phage	4.4e-47	94.8
WP_072310952.1\|1355968_1356121_-	transmembrane anchored protein	G9L6D9	Escherichia_phage	3.3e-14	83.7
WP_004200532.1\|1356219_1356516_-	hypothetical protein	T1SA06	Salmonella_phage	2.4e-24	65.1

DBSCAN-SWA_3

1705243 : 1712150

Planktothrix_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064151778.1\|1705243_1706107_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.8e-09	27.0
WP_004899467.1\|1706117_1706891_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.9e-26	36.7
WP_002912636.1\|1707133_1708027_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
WP_004144192.1\|1708272_1709634_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.8e-207	94.8
WP_004201558.1\|1709952_1710675_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
WP_019705218.1\|1710671_1712150_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	8.5e-30	28.3

DBSCAN-SWA_4

1753713 : 1762109

Enterobacteria_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015958700.1\|1753713_1755120_+	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	1.6e-38	28.9
WP_015958698.1\|1755361_1756426_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	6.4e-104	54.1
WP_060611727.1\|1756452_1757322_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	7.5e-111	67.0
WP_004189149.1\|1757353_1758244_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	3.7e-28	34.2
WP_021313307.1\|1758258_1758813_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	1.9e-51	57.6
WP_004152483.1\|1758993_1760160_+	UDP-glucose 6-dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	4.1e-112	54.7
WP_060611729.1\|1760583_1760706_-	small membrane protein	NA	NA	NA	NA
WP_004149013.1\|1761104_1762109_-	NAD-dependent epimerase	E3T4Y8	Cafeteria_roenbergensis_virus	1.0e-31	29.5

DBSCAN-SWA_5

1826633 : 1858583

Enterobacteria_phage(26.19%)

holin,integrase,head,protease,terminase,capsid,tail,lysis,portal

attL 1816555:1816569|attR 1853230:1853244

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1816555:1816569	attL	NA	NA	NA	NA
WP_064167861.1\|1826633_1827626_-\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	8.4e-175	86.9
WP_004184757.1\|1827627_1827855_-	DUF4224 domain-containing protein	Q8HAA9	Salmonella_phage	1.1e-29	78.4
WP_094327196.1\|1827887_1828166_-	hypothetical protein	K7PKM4	Enterobacterial_phage	5.1e-13	44.9
WP_080787127.1\|1828162_1828444_-	hypothetical protein	A0A0N7KZ94	Stx2-converting_phage	8.8e-13	69.8
WP_094327195.1\|1828440_1829070_-	hypothetical protein	A0A0M4RTV1	Salmonella_phage	2.4e-18	54.9
WP_023339691.1\|1829074_1829263_-	hypothetical protein	A0A192Y8X2	Salmonella_phage	3.7e-23	88.7
WP_023297278.1\|1829804_1830074_-	hypothetical protein	NA	NA	NA	NA
WP_023297277.1\|1830070_1830358_-	hypothetical protein	NA	NA	NA	NA
WP_094327194.1\|1830485_1831271_-	hypothetical protein	A4JX52	Burkholderia_virus	4.5e-62	50.6
WP_094327193.1\|1831270_1831570_-	hypothetical protein	K7PJS4	Enterobacterial_phage	3.2e-13	47.6
WP_094327192.1\|1831656_1832580_-	recombination-associated protein RdgC	S4TWL4	Salmonella_phage	5.5e-104	62.2
WP_040181908.1\|1832869_1833109_-	hypothetical protein	K7PGV8	Enterobacterial_phage	5.5e-24	79.7
WP_032408726.1\|1833337_1833985_-	helix-turn-helix domain-containing protein	H9C160	Pectobacterium_phage	9.3e-74	63.0
WP_016530206.1\|1834089_1834287_+	hypothetical protein	H9C161	Pectobacterium_phage	2.7e-16	66.1
WP_004213338.1\|1834312_1834774_+	hypothetical protein	K7PJS5	Enterobacterial_phage	1.7e-69	88.2
WP_001208720.1\|1835011_1835191_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	4.6e-15	73.1
WP_094327191.1\|1835180_1836134_+	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	3.7e-103	75.5
WP_094327190.1\|1836130_1836940_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1C9II58	Salmonella_phage	1.3e-109	69.3
WP_094327189.1\|1836949_1837327_+	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	2.5e-47	72.8
WP_032437712.1\|1837339_1838320_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.9e-134	66.9
WP_064143758.1\|1838333_1838912_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	4.9e-50	56.7
WP_012542609.1\|1839363_1839633_+\|holin	holin	K7P6H9	Enterobacteria_phage	2.8e-32	78.3
WP_094327198.1\|1839610_1840108_+	lysozyme	K7P7Q3	Enterobacteria_phage	9.6e-79	84.2
WP_094327188.1\|1840104_1840572_+\|lysis	lysis protein	A0A2D1GLQ7	Escherichia_phage	1.4e-50	69.0
WP_047666509.1\|1841069_1841411_+	HNH endonuclease	K7P7P4	Enterobacteria_phage	3.5e-48	75.7
WP_064166751.1\|1841594_1842059_+\|terminase	phage terminase small subunit P27 family	Q9B019	Phage_GMSE-1	6.3e-48	61.4
WP_064169590.1\|1842012_1843755_+\|terminase	terminase large subunit	A0A0U2C138	Paracoccus_phage	4.1e-140	45.8
WP_064169591.1\|1843754_1845062_+\|portal	phage portal protein	K7PJU5	Enterobacteria_phage	6.0e-213	84.8
WP_032426228.1\|1845074_1845923_+\|protease	Clp protease ClpP	K7PH05	Enterobacteria_phage	4.6e-129	85.0
WP_064169592.1\|1845932_1847150_+\|capsid	phage major capsid protein	K7PM57	Enterobacteria_phage	6.7e-182	81.2
WP_143995074.1\|1847192_1847417_+	hypothetical protein	K7PHI6	Enterobacteria_phage	4.7e-09	66.0
WP_064169594.1\|1847416_1847743_+\|head,tail	phage gp6-like head-tail connector protein	K7PKT4	Enterobacteria_phage	1.4e-41	68.5
WP_032428844.1\|1847754_1848093_+\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	2.2e-42	75.0
WP_019705270.1\|1848089_1848539_+	HK97 gp10 family phage protein	Q9MCS9	Enterobacteria_phage	6.7e-63	82.6
WP_094327163.1\|1848535_1848883_+	DUF3168 domain-containing protein	K7PKL6	Enterobacterial_phage	3.6e-32	63.7
WP_023313062.1\|1848942_1849647_+	immunoglobulin domain-containing protein	K7PHL2	Enterobacterial_phage	5.5e-80	66.9
WP_021313622.1\|1849677_1850082_+\|tail	phage tail protein	K7PKV6	Enterobacterial_phage	8.5e-33	57.7
WP_004177139.1\|1850084_1850390_+	DUF4035 domain-containing protein	Q9MCS5	Enterobacteria_phage	4.7e-28	64.6
WP_016530182.1\|1850463_1850697_+	hypothetical protein	K7PH16	Enterobacteria_phage	1.9e-08	47.2
WP_094327164.1\|1850757_1854156_+\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	1.2e-302	57.8
1853230:1853244	attR	NA	NA	NA	NA
WP_021313619.1\|1854176_1854650_+	hypothetical protein	A0A286S298	Klebsiella_phage	1.6e-54	61.4
WP_021313618.1\|1854636_1855122_+	DUF1833 domain-containing protein	A0A286S2B1	Klebsiella_phage	3.0e-53	66.2
WP_021313617.1\|1855131_1855512_+	hypothetical protein	A0A286S2A6	Klebsiella_phage	2.1e-57	80.2
WP_072310892.1\|1855508_1858583_+	kinase	A0A286S259	Klebsiella_phage	0.0e+00	70.6

DBSCAN-SWA_6

1865271 : 1874597

Enterobacterial_phage(22.22%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064143741.1\|1865271_1865568_+	hypothetical protein	K7PGV5	Enterobacterial_phage	9.0e-24	58.1
WP_094327166.1\|1865765_1866188_+	hypothetical protein	K7P834	Enterobacteria_phage	3.1e-25	44.5
WP_009483812.1\|1866944_1867196_+	hypothetical protein	NA	NA	NA	NA
WP_004152765.1\|1867195_1868680_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_023284987.1\|1868757_1868997_+	hypothetical protein	I6PD82	Cronobacter_phage	1.5e-21	55.7
WP_004184687.1\|1868953_1869325_+	hypothetical protein	K7PGV5	Enterobacterial_phage	1.4e-26	52.9
WP_002911596.1\|1869929_1871075_-	porin OmpC	Q1MVN1	Enterobacteria_phage	1.1e-117	58.7
WP_004148893.1\|1871466_1871733_-	hypothetical protein	NA	NA	NA	NA
WP_004151461.1\|1871613_1871895_+	hypothetical protein	NA	NA	NA	NA
WP_002911594.1\|1871937_1872645_+	phosphohydrolase	S4W232	Pandoravirus	2.8e-07	27.7
WP_009484430.1\|1872688_1874122_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	4.0e-101	53.0
WP_002911592.1\|1874102_1874597_+	very short patch repair endonuclease	E5E3X5	Burkholderia_phage	2.6e-31	51.4

DBSCAN-SWA_7

2004768 : 2056739

Staphylococcus_phage(25.0%)

protease,plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002910830.1\|2004768_2005515_+\|protease	proteasome-type protease	NA	NA	NA	NA
WP_064151688.1\|2005957_2006971_+	fatty acid desaturase	NA	NA	NA	NA
WP_032444876.1\|2006963_2007764_+	PhnD/SsuA/transferrin family substrate-binding protein	NA	NA	NA	NA
WP_004145488.1\|2007801_2007924_-	nitrilotriacetate monooxygenase	NA	NA	NA	NA
WP_004148811.1\|2007951_2008137_-	hypothetical protein	NA	NA	NA	NA
WP_002910764.1\|2008541_2009483_+	transcriptional regulator TdcA	NA	NA	NA	NA
WP_002910762.1\|2009576_2010566_+	bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA	NA	NA	NA
WP_064151687.1\|2010591_2011923_+	threonine/serine transporter TdcC	NA	NA	NA	NA
WP_004175486.1\|2011950_2013159_+	propionate kinase	NA	NA	NA	NA
WP_004899045.1\|2013187_2015482_+	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	6.7e-159	41.8
WP_049025886.1\|2015911_2017027_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004175489.1\|2017136_2018051_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_004148804.1\|2018060_2019347_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA
WP_009484370.1\|2019343_2020219_+	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	9.5e-05	41.5
WP_004175491.1\|2020215_2020935_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.5e-11	26.0
WP_064151686.1\|2020940_2021834_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004180410.1\|2022117_2023761_+	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	5.7e-136	50.4
WP_002910717.1\|2023810_2024287_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_040212962.1\|2024385_2025312_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_040212960.1\|2025615_2026911_+	MFS transporter	Q6JIH2	Burkholderia_virus	8.1e-61	36.5
WP_004175495.1\|2026925_2027732_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_020801945.1\|2027706_2028606_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002910657.1\|2028715_2029198_-	cold shock domain-containing protein	NA	NA	NA	NA
WP_002910654.1\|2029388_2030087_+	RluA family pseudouridine synthase	A0A2H4UV25	Bodo_saltans_virus	2.6e-05	27.2
WP_004899028.1\|2030112_2030697_-	DUF2058 domain-containing protein	NA	NA	NA	NA
WP_002910650.1\|2030766_2031096_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA
WP_004200315.1\|2031159_2031426_+	hypothetical protein	NA	NA	NA	NA
WP_004211095.1\|2031663_2033004_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004175498.1\|2033000_2033654_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_009307583.1\|2033657_2035355_+	OmpA family protein	NA	NA	NA	NA
WP_000019473.1\|2038082_2039063_+\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
WP_064148428.1\|2039308_2039818_+	hypothetical protein	NA	NA	NA	NA
WP_060611782.1\|2039814_2040324_+	hypothetical protein	NA	NA	NA	NA
WP_061891643.1\|2040617_2041973_+	S-type Pyocin	NA	NA	NA	NA
WP_021464429.1\|2041973_2042156_+	hypothetical protein	NA	NA	NA	NA
WP_004153085.1\|2042152_2042482_+	hypothetical protein	NA	NA	NA	NA
WP_064151685.1\|2042478_2042985_+	hypothetical protein	NA	NA	NA	NA
WP_061891644.1\|2043030_2043261_+	hypothetical protein	NA	NA	NA	NA
WP_004175515.1\|2044492_2044804_+	hypothetical protein	NA	NA	NA	NA
WP_040213264.1\|2045897_2046791_+	SUMF1/EgtB/PvdO family nonheme iron enzyme	A0A7H6	Microcystis_virus	8.2e-12	28.6
WP_004184614.1\|2046926_2047268_+	hypothetical protein	NA	NA	NA	NA
WP_064151684.1\|2047456_2047714_+	hypothetical protein	NA	NA	NA	NA
WP_002910497.1\|2048011_2048278_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_064151683.1\|2048281_2049439_+	hypothetical protein	NA	NA	NA	NA
WP_064151682.1\|2049422_2052833_+	type VI secretion protein VasK	NA	NA	NA	NA
WP_064151681.1\|2052966_2054730_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_002910494.1\|2054729_2055776_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_021314026.1\|2055750_2056293_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_004152261.1\|2056295_2056739_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA

DBSCAN-SWA_8

2711977 : 2722865

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064151569.1\|2711977_2715085_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.6
WP_064152923.1\|2716435_2717524_-	AAA family ATPase	A0A077SLJ9	Escherichia_phage	2.0e-209	99.4
WP_004176262.1\|2717610_2717871_-	hypothetical protein	A0A077SK33	Escherichia_phage	5.4e-41	98.8
WP_001620095.1\|2718168_2719029_+	class A broad-spectrum beta-lactamase SHV-1	A0A077SL40	Escherichia_phage	4.4e-156	99.7
WP_002210513.1\|2719049_2719811_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_023148136.1\|2719801_2720035_+	hypothetical protein	NA	NA	NA	NA
WP_064152922.1\|2720072_2720975_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.5e-157	98.3
WP_064152921.1\|2720986_2722252_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	1.5e-232	99.0
WP_002210516.1\|2722244_2722865_+	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_9

3376684 : 3386148

Brazilian_cedratvirus(16.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004209699.1\|3376684_3378406_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3
WP_002898014.1\|3378450_3379152_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|3379505_3379724_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_002896522.1\|3379844_3382124_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
WP_002896520.1\|3382154_3382472_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
WP_002896516.1\|3382797_3383019_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
WP_064152930.1\|3383095_3385036_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	7.2e-37	40.5
WP_004191152.1\|3385032_3386148_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7

DBSCAN-SWA_10

3868155 : 3913922

Salmonella_phage(22.22%)

integrase,tRNA,terminase,head

attL 3890164:3890179|attR 3913140:3913155

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009308063.1\|3868155_3868743_-	DUF2612 domain-containing protein	A0A077K9U8	Edwardsiella_phage	3.8e-34	43.4
WP_094327185.1\|3868735_3869968_-	hypothetical protein	A0A077KGW9	Edwardsiella_phage	1.5e-104	50.7
WP_094327184.1\|3869975_3870332_-	hypothetical protein	NA	NA	NA	NA
WP_094327183.1\|3870417_3871170_-	hypothetical protein	A0A0P0ZD96	Stx2-converting_phage	5.8e-59	53.5
WP_094327182.1\|3871239_3871956_-	hypothetical protein	H6WRU8	Salmonella_phage	2.6e-48	45.3
WP_004223324.1\|3871945_3872119_-	Arc family DNA-binding protein	I6R9A8	Salmonella_phage	5.1e-19	85.7
WP_032425981.1\|3872231_3872594_+	Arc family DNA-binding protein	H6WRU6	Salmonella_phage	1.5e-12	53.5
WP_032425983.1\|3872614_3872818_+	hypothetical protein	NA	NA	NA	NA
WP_100222754.1\|3872847_3873198_-	hypothetical protein	NA	NA	NA	NA
WP_040155013.1\|3873200_3873788_-	hypothetical protein	A0A1I9SEV6	Klebsiella_phage	1.5e-06	25.9
WP_032425987.1\|3873789_3874644_-	hypothetical protein	A0A077KC17	Edwardsiella_phage	2.4e-29	29.8
WP_032425989.1\|3874640_3874946_-	hypothetical protein	A0A077K9U4	Edwardsiella_phage	2.4e-19	45.5
WP_094327181.1\|3874947_3875790_-	hypothetical protein	A0A077KGW3	Edwardsiella_phage	7.7e-28	32.1
WP_069335121.1\|3875793_3877719_-	lytic transglycosylase domain-containing protein	A0A0M4REK7	Salmonella_phage	1.7e-38	53.2
WP_032442966.1\|3877699_3877879_-	hypothetical protein	NA	NA	NA	NA
WP_001518122.1\|3877920_3878397_-	hypothetical protein	A0A068CGG2	Acinetobacter_phage	5.5e-07	29.8
WP_047671877.1\|3878476_3879034_-	Rha family transcriptional regulator	A0A088CBJ5	Shigella_phage	7.7e-85	85.9
WP_043875684.1\|3879214_3879658_-	hypothetical protein	NA	NA	NA	NA
WP_094327180.1\|3879657_3881139_-	DUF3383 domain-containing protein	Q2NPD0	Xanthomonas_phage	1.3e-59	34.6
WP_094327179.1\|3881142_3881694_-	hypothetical protein	NA	NA	NA	NA
WP_049100194.1\|3881675_3882044_-	hypothetical protein	Q6UJ26	Burkholderia_virus	1.2e-06	29.8
WP_094327178.1\|3882040_3882604_-	hypothetical protein	H9C0W2	Aeromonas_phage	4.8e-18	32.9
WP_094327177.1\|3882606_3883050_-	DUF4054 domain-containing protein	A0A068CGG9	Acinetobacter_phage	1.4e-12	40.3
WP_049100175.1\|3883049_3883376_-	hypothetical protein	H9C0V9	Aeromonas_phage	3.6e-10	41.6
WP_047724167.1\|3883377_3884415_-	DUF2184 domain-containing protein	A0A219YBB0	Aeromonas_phage	3.2e-84	50.3
WP_064157444.1\|3884414_3884897_-	hypothetical protein	A0A219YBF2	Aeromonas_phage	5.9e-33	50.3
WP_094327176.1\|3884898_3886716_-	DUF2213 domain-containing protein	A0A219YCD3	Aeromonas_phage	1.4e-58	37.5
WP_094327175.1\|3886778_3887468_-\|head	phage head morphogenesis protein	H9C0V1	Aeromonas_phage	2.3e-62	52.2
WP_094327174.1\|3887520_3889041_-	DUF1073 domain-containing protein	A0A2R3UAL5	Myoviridae_environmental_samples	6.7e-107	45.4
WP_004196799.1\|3889041_3890718_-\|terminase	phage terminase large subunit	H9C191	Pectobacterium_phage	1.8e-249	74.4
3890164:3890179	attL	NA	NA	NA	NA
WP_086625995.1\|3890719_3891205_-	DUF2280 domain-containing protein	H9C190	Pectobacterium_phage	6.3e-67	78.9
WP_086625994.1\|3891235_3891871_-	hypothetical protein	I6S676	Salmonella_phage	9.4e-103	81.6
WP_142297815.1\|3892193_3892445_-	Rz1 lytic protein	U5P461	Shigella_phage	2.9e-23	70.7
WP_143995078.1\|3892329_3892719_-	DUF2570 domain-containing protein	Q8SBD9	Shigella_phage	4.8e-25	49.2
WP_080876462.1\|3892715_3893219_-	lysozyme	A0A1V0E5Q7	Salmonella_phage	1.3e-75	79.0
WP_029884058.1\|3893221_3893536_-	hypothetical protein	H6WRZ3	Salmonella_phage	4.9e-44	86.1
WP_126449347.1\|3893506_3893764_+	hypothetical protein	NA	NA	NA	NA
WP_086625988.1\|3894167_3894857_-	antiterminator	I6PDF8	Cronobacter_phage	4.2e-64	56.2
WP_086625986.1\|3894853_3894994_-	YlcG family protein	NA	NA	NA	NA
WP_064147578.1\|3894990_3895215_-	hypothetical protein	Q76H69	Enterobacteria_phage	1.7e-22	60.3
WP_086625984.1\|3895211_3895793_-	protein NinG	E7C9S3	Salmonella_phage	4.9e-42	50.2
WP_086625982.1\|3895785_3895956_-	hypothetical protein	G8C7V4	Escherichia_phage	1.5e-15	75.0
WP_004884220.1\|3895955_3896411_-	dLP12 prophage	K7P7B8	Enterobacteria_phage	1.0e-55	69.5
WP_032418538.1\|3896670_3896910_-	hypothetical protein	G8C7S3	Escherichia_phage	8.6e-09	51.7
WP_080831306.1\|3896902_3897208_-	hypothetical protein	K7PJS3	Enterobacterial_phage	1.4e-27	61.0
WP_094327187.1\|3897925_3898474_-	hypothetical protein	A0A2H4FRZ0	Salmonella_phage	1.0e-33	67.8
WP_023158884.1\|3898703_3898964_-	DUF4752 family protein	T1S9K2	Salmonella_phage	7.4e-30	75.0
WP_094327172.1\|3898960_3899500_-	hypothetical protein	K7PKY4	Enterobacterial_phage	9.6e-16	62.7
WP_012542626.1\|3899496_3899790_-	protein ren	O48423	Enterobacteria_phage	2.5e-26	65.6
WP_012542627.1\|3899786_3900656_-	ATP-binding protein	K7PLU3	Enterobacteria_phage	4.0e-96	70.1
WP_024264479.1\|3900640_3901495_-	replication protein	K7PGT1	Enterobacteria_phage	1.7e-62	54.8
WP_001548453.1\|3901580_3901802_-	hypothetical protein	G8EYH8	Enterobacteria_phage	6.9e-05	41.7
WP_004201115.1\|3901842_3902070_-	helix-turn-helix domain-containing protein	Q76H55	Enterobacteria_phage	1.4e-24	77.1
WP_047671980.1\|3902181_3902880_+	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	6.2e-108	84.1
WP_012542633.1\|3903025_3903430_+	hypothetical protein	NA	NA	NA	NA
WP_032717012.1\|3904133_3904328_+	hypothetical protein	NA	NA	NA	NA
WP_064151806.1\|3904413_3904611_+	hypothetical protein	NA	NA	NA	NA
WP_064151805.1\|3904762_3905416_+	single-stranded DNA-binding protein	A0A1W6JP21	Morganella_phage	5.2e-64	62.3
WP_064151804.1\|3905399_3905690_+	hypothetical protein	NA	NA	NA	NA
WP_064151803.1\|3905686_3905992_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_064151802.1\|3905988_3907995_+	phage N-6-adenine-methyltransferase	A0A1B0V7P0	Salmonella_phage	7.5e-114	46.0
WP_017898877.1\|3907991_3908213_+	hypothetical protein	NA	NA	NA	NA
WP_064151801.1\|3908209_3908554_+	hypothetical protein	NA	NA	NA	NA
WP_064151800.1\|3908546_3909134_+	hypothetical protein	M1F3E2	Salmonella_phage	1.2e-38	47.9
WP_064162978.1\|3909184_3909352_+	conjugal transfer protein TraR	A0A0K2FI84	Escherichia_phage	2.7e-09	56.9
WP_040186416.1\|3909351_3909591_+	DUF4222 domain-containing protein	Q6H9Z8	Enterobacteria_phage	4.6e-10	43.6
WP_071549006.1\|3909603_3909939_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_064151799.1\|3909815_3910979_+\|integrase	site-specific integrase	G8C7S0	Escherichia_phage	3.8e-203	87.1
WP_071556163.1\|3911048_3911372_-	hypothetical protein	NA	NA	NA	NA
WP_004143017.1\|3911410_3912277_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.3e-30	34.8
WP_004143016.1\|3912278_3912491_+	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_004143010.1\|3912536_3913922_-\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.5e-46	35.4
3913140:3913155	attR	NA	NA	NA	NA

DBSCAN-SWA_11

4611303 : 4623335

Enterobacteria_phage(71.43%)

integrase

attL 4602702:4602716|attR 4625509:4625523

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4602702:4602716	attL	NA	NA	NA	NA
WP_060612411.1\|4611303_4612569_-\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	5.8e-80	40.3
WP_064152983.1\|4613311_4615645_-	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	83.7
WP_064152984.1\|4615658_4615979_-	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_064152985.1\|4615975_4616203_-	hypothetical protein	NA	NA	NA	NA
WP_077265947.1\|4616199_4616751_-	ash family protein	Q7M2A7	Enterobacteria_phage	4.9e-31	66.7
WP_064152986.1\|4617574_4618312_+	hypothetical protein	Q7M2A2	Enterobacteria_phage	1.9e-70	60.1
WP_023339332.1\|4618308_4618554_+	hypothetical protein	Q7M294	Enterobacteria_phage	5.0e-20	59.3
WP_064152987.1\|4618571_4619138_+	Polarity suppression protein	Q7M2A1	Enterobacteria_phage	3.9e-60	64.9
WP_077265948.1\|4619203_4619419_+	hypothetical protein	NA	NA	NA	NA
WP_064152988.1\|4619534_4621943_-	hypothetical protein	NA	NA	NA	NA
WP_071556222.1\|4622063_4623335_-\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	3.1e-73	40.7
4625509:4625523	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP041102

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1796 : 43132

Escherichia_phage(45.45%)

protease,transposase,integrase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000616807.1\|1796_2450_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_000557619.1\|2542_2800_+	type II toxin-antitoxin system antitoxin PemI	NA	NA	NA	NA
WP_001398199.1\|2732_3134_+	type II toxin-antitoxin system toxin endoribonuclease PemK	NA	NA	NA	NA
WP_001067855.1\|3824_4529_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001288435.1\|4976_6410_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.4e-106	50.9
WP_001532073.1\|6443_7658_-	type II site-specific deoxyribonuclease	E5E3X4	Burkholderia_phage	2.1e-34	42.5
WP_001067855.1\|9403_10108_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_024189880.1\|10084_10366_+	hypothetical protein	NA	NA	NA	NA
WP_000046891.1\|10981_11317_-	thermonuclease family protein	G8DH70	Emiliania_huxleyi_virus	2.8e-05	35.7
WP_001348193.1\|11208_11436_-	hypothetical protein	NA	NA	NA	NA
WP_089586275.1\|11475_12123_+\|transposase	transposase	NA	NA	NA	NA
WP_001348195.1\|12187_12562_+	cupin domain-containing protein	NA	NA	NA	NA
WP_001097412.1\|12585_13149_+	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|13533_14238_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_012579081.1\|15819_16743_-\|transposase	IS5 family transposase	Q9MCT5	Escherichia_phage	2.2e-177	99.7
WP_001617865.1\|16822_17698_-	class A extended-spectrum beta-lactamase CTX-M-14	A0A1B0VBP7	Salmonella_phage	6.1e-153	99.6
WP_000608644.1\|17947_19210_-\|transposase	IS1380-like element ISEc9 family transposase	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0
WP_001067855.1\|21529_22234_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000219391.1\|22355_23261_+	Mph(A) family macrolide 2'-phosphotransferase	NA	NA	NA	NA
WP_001067855.1\|24026_24731_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_013362819.1\|24865_24961_+	23S rRNA methyltransferase attenuation leader peptide	NA	NA	NA	NA
WP_013362818.1\|25086_25824_+	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	E4ZFQ0	Streptococcus_phage	6.3e-135	99.6
WP_100249774.1\|25828_25939_+	hypothetical protein	E4ZFP9	Streptococcus_phage	1.9e-08	88.6
WP_013362817.1\|26453_26903_+	hypothetical protein	NA	NA	NA	NA
WP_013362816.1\|27431_28964_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_001067855.1\|29286_29991_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000557452.1\|30097_30958_+	aminoglycoside N-acetyltransferase AAC(3)-IIa	NA	NA	NA	NA
WP_002063889.1\|30970_31513_+	AAA family ATPase	NA	NA	NA	NA
WP_001067855.1\|32706_33411_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001302628.1\|34162_34477_+	hypothetical protein	NA	NA	NA	NA
WP_000535297.1\|34529_35309_+	hypothetical protein	NA	NA	NA	NA
WP_001302707.1\|35359_36139_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	2.6e-54	96.4
WP_000239529.1\|36276_36552_-	hypothetical protein	NA	NA	NA	NA
WP_000633913.1\|36545_37190_-	AAA family ATPase	A0A222YXS3	Escherichia_phage	1.9e-39	43.0
WP_001103690.1\|37418_38390_+	hypothetical protein	A0A222YXF2	Escherichia_phage	7.4e-67	42.9
WP_000340829.1\|38394_38787_+	hypothetical protein	NA	NA	NA	NA
WP_000457496.1\|38791_40063_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	1.4e-142	60.5
WP_000109071.1\|40062_40500_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.3e-26	48.4
WP_000618110.1\|40496_40745_-	protein ImpC	Q2A098	Sodalis_phage	1.9e-14	48.0
WP_001331411.1\|40855_41125_+	hypothetical protein	NA	NA	NA	NA
WP_065800503.1\|41138_42065_+	DUF1281 domain-containing protein	NA	NA	NA	NA
WP_030003447.1\|42448_43132_+	DNA methylase	A0A2I7RE86	Vibrio_phage	1.1e-29	36.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP041100

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1727 : 59983

uncultured_Caudovirales_phage(29.41%)

transposase,integrase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001515717.1\|1727_2468_-\|integrase	site-specific integrase	I3WFA4	Macacine_betaherpesvirus	5.4e-25	58.6
WP_039026396.1\|3359_3674_+\|transposase	transposase	NA	NA	NA	NA
WP_039026397.1\|3670_4492_+\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	3.5e-09	28.7
WP_004152065.1\|4828_5776_+	sensor domain-containing diguanylate cyclase	G3MA91	Bacillus_virus	1.8e-12	30.6
WP_071527918.1\|5802_6114_-	EAL domain-containing protein	NA	NA	NA	NA
WP_032410298.1\|6178_7102_+\|transposase	IS5 family transposase	Q9MCT5	Escherichia_phage	7.1e-176	98.7
WP_004197688.1\|7774_8032_-	hypothetical protein	NA	NA	NA	NA
WP_080895248.1\|8651_10088_+	EAL domain-containing protein	NA	NA	NA	NA
WP_004152070.1\|11070_12348_-	DUF2254 domain-containing protein	NA	NA	NA	NA
WP_004178088.1\|12410_14408_-	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	9.7e-21	25.9
WP_085955172.1\|15447_16655_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	1.7e-100	63.2
WP_004178091.1\|18083_18515_-	silver-binding protein SilE	NA	NA	NA	NA
WP_003032875.1\|18765_20241_-	copper/silver sensor histidine kinase SilS	W8CYF6	Bacillus_phage	1.0e-27	30.1
WP_001572351.1\|20233_20914_-	copper/silver response regulator transcription factor SilR	W8CYM9	Bacillus_phage	2.1e-31	35.6
WP_000475512.1\|21103_22489_+	Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC	NA	NA	NA	NA
WP_001246153.1\|22517_22871_+	cation efflux system protein CusF	NA	NA	NA	NA
WP_004152079.1\|22984_24277_+	Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB	NA	NA	NA	NA
WP_004098958.1\|24287_27434_+	Cu(+)/Ag(+) efflux RND transporter permease subunit SilA	S5VTK5	Leptospira_phage	4.0e-61	22.5
WP_000758228.1\|27520_27961_+	hypothetical protein	NA	NA	NA	NA
WP_004098955.1\|28087_30535_+	Ag(+)-translocating P-type ATPase SilP	A0A218MNH6	uncultured_virus	7.6e-84	35.8
WP_000843497.1\|30575_30773_+	DUF2933 domain-containing protein	NA	NA	NA	NA
WP_004118669.1\|30806_31544_-	peptidoglycan DD-metalloendopeptidase family protein	A0A2H4JAF5	uncultured_Caudovirales_phage	1.2e-11	32.5
WP_001023257.1\|31832_32282_-	copper resistance protein	NA	NA	NA	NA
WP_000925242.1\|32515_34333_+	multicopper oxidase PcoA	NA	NA	NA	NA
WP_001242438.1\|34332_35229_+	copper resistance outer membrane transporter PcoB	NA	NA	NA	NA
WP_000025662.1\|35268_35649_+	copper resistance system metallochaperone PcoC	NA	NA	NA	NA
WP_004118344.1\|35653_36583_+	copper resistance inner membrane protein PcoD	NA	NA	NA	NA
WP_001188930.1\|36637_37318_+	copper response regulator transcription factor PcoR	W8CYM9	Bacillus_phage	8.7e-30	34.4
WP_004152084.1\|37314_38715_+	copper resistance membrane spanning protein PcoS	W8CYF6	Bacillus_phage	4.1e-18	26.3
WP_004152085.1\|38931_39366_+	copper resistance system metallochaperone PcoE	NA	NA	NA	NA
WP_004152086.1\|39597_39777_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_031944101.1\|41519_42029_+	major intrinsic protein MIP	NA	NA	NA	NA
WP_004152091.1\|42078_42576_-	N-acetyltransferase	NA	NA	NA	NA
WP_004152092.1\|42907_43234_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_085903505.1\|43233_43944_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	2.9e-92	77.0
WP_064152264.1\|43952_44498_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_004152095.1\|44573_44936_+	arsenic metallochaperone ArsD family protein	NA	NA	NA	NA
WP_004152096.1\|46832_47369_+	N-acetyltransferase	NA	NA	NA	NA
WP_004152097.1\|47401_47827_-	glutaredoxin-dependent arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	2.3e-52	72.9
WP_004152098.1\|47839_49129_-	arsenite efflux transporter membrane subunit ArsB	A0A2H4J144	uncultured_Caudovirales_phage	1.9e-171	74.0
WP_004152099.1\|49176_50928_-	arsenite efflux transporter ATPase subunit ArsA	NA	NA	NA	NA
WP_004152100.1\|50945_51308_-	arsenite efflux transporter metallochaperone ArsD	NA	NA	NA	NA
WP_004152101.1\|51357_51708_-	As(III)-sensing metalloregulatory transcriptional repressor ArsR	A0A2H4J145	uncultured_Caudovirales_phage	1.4e-23	50.9
WP_004152102.1\|52065_52335_+	hypothetical protein	NA	NA	NA	NA
WP_004152103.1\|52322_52898_+	hypothetical protein	NA	NA	NA	NA
WP_004152104.1\|52928_53423_+	DNA-binding protein	NA	NA	NA	NA
WP_004152105.1\|53466_53835_+	hypothetical protein	NA	NA	NA	NA
WP_004152106.1\|53868_54072_+	hemolysin expression modulator Hha	NA	NA	NA	NA
WP_004152107.1\|54120_54378_+	hypothetical protein	NA	NA	NA	NA
WP_004152108.1\|54453_54708_+	hypothetical protein	NA	NA	NA	NA
WP_003026799.1\|54883_55150_+	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_003026803.1\|55137_55620_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_020314316.1\|55831_57178_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_004152113.1\|59020_59983_-\|protease	M48 family metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_2

65470 : 130165

Stx2-converting_phage(18.75%)

transposase,integrase,bacteriocin

attL 93838:93855|attR 133300:133317

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004118209.1\|65470_65734_+\|transposase	transposase	NA	NA	NA	NA
WP_004159231.1\|68093_68420_+	hypothetical protein	NA	NA	NA	NA
WP_004153729.1\|69359_70187_+	phosphonate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.6e-20	37.6
WP_004152695.1\|70183_71047_+	phosphate/phosphite/phosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004152694.1\|71055_71883_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA
WP_004152693.1\|71891_72902_+	phosphonate dehydrogenase PtxD	A0A1V0SBV6	Catovirus	1.4e-15	25.1
WP_004152692.1\|72895_73765_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_001067855.1\|74386_75091_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001087807.1\|75205_75442_-	broad-spectrum mercury transporter MerE	NA	NA	NA	NA
WP_001277466.1\|75438_75804_-	mercury resistance co-regulator MerD	NA	NA	NA	NA
WP_000209296.1\|75821_77507_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	1.8e-39	29.1
WP_000522996.1\|77545_77971_-	organomercurial transporter MerC	NA	NA	NA	NA
WP_000732275.1\|77998_78274_-	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_001294654.1\|78289_78670_-	mercuric ion transporter MerT	NA	NA	NA	NA
WP_001166628.1\|78741_79197_+	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_000333416.1\|80873_81146_+	His-Xaa-Ser system protein HxsD	NA	NA	NA	NA
WP_004118216.1\|81145_82534_+	His-Xaa-Ser system radical SAM maturase HxsB	S5VT21	Leptospira_phage	6.3e-51	29.0
WP_000005560.1\|82526_83639_+	His-Xaa-Ser system radical SAM maturase HxsC	S5WIP3	Leptospira_phage	1.5e-47	33.8
WP_004118217.1\|83635_84271_+	His-Xaa-Ser repeat protein HxsA	NA	NA	NA	NA
WP_004114613.1\|84827_85205_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	1.6e-57	91.3
WP_004152557.1\|85201_85549_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.0e-59	95.7
WP_004118832.1\|89371_91105_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.9e-15	29.6
WP_004118225.1\|91112_92060_-	acetamidase/formamidase family protein	A0A1V0S8X7	Catovirus	9.6e-11	22.7
WP_004152278.1\|92104_93709_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004118227.1\|93721_94642_-	ABC transporter permease	NA	NA	NA	NA
93838:93855	attL	NA	NA	NA	NA
WP_004152279.1\|94641_95490_-	ABC transporter permease	NA	NA	NA	NA
WP_004118229.1\|95486_96080_-	ANTAR domain-containing protein	NA	NA	NA	NA
WP_004118840.1\|96076_97204_-	transporter substrate-binding protein	NA	NA	NA	NA
WP_004118231.1\|97488_97656_-\|integrase	integrase	NA	NA	NA	NA
WP_004118235.1\|98758_99280_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_004118237.1\|99276_100230_+	fec operon regulator FecR	NA	NA	NA	NA
WP_004152280.1\|100315_102640_+	Fe(3+) dicitrate transport protein FecA	NA	NA	NA	NA
WP_004118241.1\|102684_103587_+	Fe(3+) dicitrate ABC transporter substrate-binding protein FecB	NA	NA	NA	NA
WP_004118243.1\|103583_104582_+	iron-dicitrate ABC transporter permease FecC	NA	NA	NA	NA
WP_004152281.1\|104578_105535_+	Fe(3+) dicitrate ABC transporter permease subunit FecD	NA	NA	NA	NA
WP_004152282.1\|105535_106303_+	Fe(3+) dicitrate ABC transporter ATP-binding protein FecE	G3M9Y6	Bacillus_virus	9.8e-14	25.2
WP_004118251.1\|106401_106695_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.7e-49	96.9
WP_071527925.1\|107025_107268_-	EAL domain-containing protein	NA	NA	NA	NA
WP_000427623.1\|107565_108570_-\|transposase	IS110-like element IS4321 family transposase	NA	NA	NA	NA
WP_004152284.1\|108973_109984_-	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_004152285.1\|110006_110222_-	hypothetical protein	NA	NA	NA	NA
WP_004152286.1\|110444_111527_+	LacI family DNA-binding transcriptional regulator	C6ZCU4	Enterobacteria_phage	6.8e-186	96.4
WP_004152287.1\|111648_114723_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	96.7
WP_003846917.1\|114774_116028_+	lactose permease	NA	NA	NA	NA
WP_143995080.1\|116164_117088_+\|transposase	IS5 family transposase	Q9MCT5	Escherichia_phage	1.9e-176	99.3
WP_004152290.1\|117732_120042_+	ATPase	NA	NA	NA	NA
WP_004152291.1\|120045_121362_+	ATP-binding protein	NA	NA	NA	NA
WP_000093087.1\|121358_123554_+	DEAD/DEAH box helicase	NA	NA	NA	NA
WP_009486390.1\|124175_124364_+	hypothetical protein	NA	NA	NA	NA
WP_024940886.1\|124507_124696_+	hypothetical protein	NA	NA	NA	NA
WP_004152292.1\|125000_125858_-	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
WP_004171457.1\|125850_125928_-	RepA leader peptide Tap	NA	NA	NA	NA
WP_004199332.1\|126144_126423_-	replication regulatory protein RepA	NA	NA	NA	NA
WP_094327157.1\|126743_127295_-	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	5.6e-19	34.5
WP_004152296.1\|127563_127842_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_004178051.1\|127843_130165_-\|bacteriocin	klebicin B-related nuclease bacteriocin	NA	NA	NA	NA
133300:133317	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. NZ_CP041104

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

20774 : 27406

Burkholderia_virus(16.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039026397.1\|20774_21596_+\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	3.5e-09	28.7
WP_063102497.1\|22120_22507_-	bleomycin binding protein	NA	NA	NA	NA
WP_077249982.1\|22575_22755_+	hypothetical protein	Q1MVP5	Enterobacteria_phage	7.3e-05	85.7
WP_001067858.1\|22700_23405_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_094309425.1\|23786_24347_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	1.5e-48	85.4
WP_065813436.1\|24709_26332_+	ABC-F family ATP-binding cassette domain-containing protein	A0A1B0RXA0	Streptococcus_phage	3.5e-29	32.3
WP_012457129.1\|26494_26734_-	ParG	NA	NA	NA	NA
WP_094309423.1\|26788_27406_-	ParA family protein	D4HTX7	Vibrio_phage	5.5e-23	36.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage