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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP022709 Lactobacillus sakei strain WiKim0063 chromosome, complete genome 1 crisprs DinG,DEDDh,cas3,csa3 0 0 7 0
NZ_CP022710 Lactobacillus sakei strain WiKim0063 plasmid pLBS01, complete sequence 1 crisprs csa3 0 2 2 0
NZ_CP022711 Lactobacillus sakei strain WiKim0063 plasmid pLBS02, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP022709
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022709_1 1713589-1714148 Orphan NA
7 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 94334 : 103953 9 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_2 209724 : 218018 8 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_3 343932 : 393798 63 Lactobacillus_phage(39.39%) terminase,tRNA,capsid,bacteriocin,integrase,tail,portal attL 336407:336421|attR 373893:373907
DBSCAN-SWA_4 587709 : 595105 7 Staphylococcus_phage(33.33%) tRNA NA
DBSCAN-SWA_5 750183 : 762240 13 Enterococcus_phage(30.0%) transposase NA
DBSCAN-SWA_6 787724 : 841744 47 unidentified_phage(12.5%) tRNA,transposase NA
DBSCAN-SWA_7 862340 : 870449 9 Bacillus_phage(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP022710
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022710_1 60773-60929 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP022710_1 1.1|60799|42|NZ_CP022710|PILER-CR 60799-60840 42 NZ_CP022710 Lactobacillus sakei strain WiKim0063 plasmid pLBS01, complete sequence 60793-60834 0 1.0
NZ_CP022710_1 1.1|60799|42|NZ_CP022710|PILER-CR 60799-60840 42 NZ_KF559312 Lactobacillus sakei strain KCA311 plasmid pKCA54, complete sequence 45113-45154 0 1.0
NZ_CP022710_1 1.1|60799|42|NZ_CP022710|PILER-CR 60799-60840 42 NZ_LT960778 Lactobacillus sakei strain FLEC01 plasmid 2, complete sequence 1438-1479 0 1.0
NZ_CP022710_1 1.1|60799|42|NZ_CP022710|PILER-CR 60799-60840 42 NZ_LT907987 Lactobacillus sakei strain T332 plasmid p332A2, complete sequence 1438-1479 0 1.0
NZ_CP022710_1 1.1|60799|42|NZ_CP022710|PILER-CR 60799-60840 42 AP018700 Lactobacillus curvatus NFH-Km12 plasmid NFH-Km12_plasmid1 DNA, complete genome 35553-35594 0 1.0
NZ_CP022710_1 1.2|60867|43|NZ_CP022710|PILER-CR 60867-60909 43 NZ_AP017932 Lactobacillus sakei strain LK-145 plasmid pLs145-a, complete sequence 21965-22007 0 1.0
NZ_CP022710_1 1.2|60867|43|NZ_CP022710|PILER-CR 60867-60909 43 NZ_CP025207 Lactobacillus sakei strain WiKim0074 plasmid pLSW74_1, complete sequence 34410-34452 0 1.0
NZ_CP022710_1 1.2|60867|43|NZ_CP022710|PILER-CR 60867-60909 43 NZ_CP022710 Lactobacillus sakei strain WiKim0063 plasmid pLBS01, complete sequence 60861-60903 0 1.0
NZ_CP022710_1 1.2|60867|43|NZ_CP022710|PILER-CR 60867-60909 43 NZ_KF559312 Lactobacillus sakei strain KCA311 plasmid pKCA54, complete sequence 45044-45086 0 1.0
NZ_CP022710_1 1.2|60867|43|NZ_CP022710|PILER-CR 60867-60909 43 NZ_LT960778 Lactobacillus sakei strain FLEC01 plasmid 2, complete sequence 1369-1411 0 1.0
NZ_CP022710_1 1.2|60867|43|NZ_CP022710|PILER-CR 60867-60909 43 NZ_LT960782 Lactobacillus sakei strain J64 plasmid 2, complete sequence 1369-1411 0 1.0
NZ_CP022710_1 1.2|60867|43|NZ_CP022710|PILER-CR 60867-60909 43 NZ_LT907987 Lactobacillus sakei strain T332 plasmid p332A2, complete sequence 1369-1411 0 1.0
NZ_CP022710_1 1.2|60867|43|NZ_CP022710|PILER-CR 60867-60909 43 AP018700 Lactobacillus curvatus NFH-Km12 plasmid NFH-Km12_plasmid1 DNA, complete genome 35484-35526 0 1.0
NZ_CP022710_1 1.1|60799|42|NZ_CP022710|PILER-CR 60799-60840 42 NZ_LT960782 Lactobacillus sakei strain J64 plasmid 2, complete sequence 1438-1479 1 0.976
NZ_CP022710_1 1.1|60799|42|NZ_CP022710|PILER-CR 60799-60840 42 NZ_AP017932 Lactobacillus sakei strain LK-145 plasmid pLs145-a, complete sequence 21897-21938 1 0.976
NZ_CP022710_1 1.1|60799|42|NZ_CP022710|PILER-CR 60799-60840 42 NZ_CP025207 Lactobacillus sakei strain WiKim0074 plasmid pLSW74_1, complete sequence 34342-34383 1 0.976

1. spacer 1.1|60799|42|NZ_CP022710|PILER-CR matches to NZ_CP022710 (Lactobacillus sakei strain WiKim0063 plasmid pLBS01, complete sequence) position: , mismatch: 0, identity: 1.0

ggaaggcacgataaatattttgtttacttgtattaatgtaaa	CRISPR spacer
ggaaggcacgataaatattttgtttacttgtattaatgtaaa	Protospacer
******************************************

2. spacer 1.1|60799|42|NZ_CP022710|PILER-CR matches to NZ_KF559312 (Lactobacillus sakei strain KCA311 plasmid pKCA54, complete sequence) position: , mismatch: 0, identity: 1.0

ggaaggcacgataaatattttgtttacttgtattaatgtaaa	CRISPR spacer
ggaaggcacgataaatattttgtttacttgtattaatgtaaa	Protospacer
******************************************

3. spacer 1.1|60799|42|NZ_CP022710|PILER-CR matches to NZ_LT960778 (Lactobacillus sakei strain FLEC01 plasmid 2, complete sequence) position: , mismatch: 0, identity: 1.0

ggaaggcacgataaatattttgtttacttgtattaatgtaaa	CRISPR spacer
ggaaggcacgataaatattttgtttacttgtattaatgtaaa	Protospacer
******************************************

4. spacer 1.1|60799|42|NZ_CP022710|PILER-CR matches to NZ_LT907987 (Lactobacillus sakei strain T332 plasmid p332A2, complete sequence) position: , mismatch: 0, identity: 1.0

ggaaggcacgataaatattttgtttacttgtattaatgtaaa	CRISPR spacer
ggaaggcacgataaatattttgtttacttgtattaatgtaaa	Protospacer
******************************************

5. spacer 1.1|60799|42|NZ_CP022710|PILER-CR matches to AP018700 (Lactobacillus curvatus NFH-Km12 plasmid NFH-Km12_plasmid1 DNA, complete genome) position: , mismatch: 0, identity: 1.0

ggaaggcacgataaatattttgtttacttgtattaatgtaaa	CRISPR spacer
ggaaggcacgataaatattttgtttacttgtattaatgtaaa	Protospacer
******************************************

6. spacer 1.2|60867|43|NZ_CP022710|PILER-CR matches to NZ_AP017932 (Lactobacillus sakei strain LK-145 plasmid pLs145-a, complete sequence) position: , mismatch: 0, identity: 1.0

cataataatacctataaataagcaatacacaacttttaatact	CRISPR spacer
cataataatacctataaataagcaatacacaacttttaatact	Protospacer
*******************************************

7. spacer 1.2|60867|43|NZ_CP022710|PILER-CR matches to NZ_CP025207 (Lactobacillus sakei strain WiKim0074 plasmid pLSW74_1, complete sequence) position: , mismatch: 0, identity: 1.0

cataataatacctataaataagcaatacacaacttttaatact	CRISPR spacer
cataataatacctataaataagcaatacacaacttttaatact	Protospacer
*******************************************

8. spacer 1.2|60867|43|NZ_CP022710|PILER-CR matches to NZ_CP022710 (Lactobacillus sakei strain WiKim0063 plasmid pLBS01, complete sequence) position: , mismatch: 0, identity: 1.0

cataataatacctataaataagcaatacacaacttttaatact	CRISPR spacer
cataataatacctataaataagcaatacacaacttttaatact	Protospacer
*******************************************

9. spacer 1.2|60867|43|NZ_CP022710|PILER-CR matches to NZ_KF559312 (Lactobacillus sakei strain KCA311 plasmid pKCA54, complete sequence) position: , mismatch: 0, identity: 1.0

cataataatacctataaataagcaatacacaacttttaatact	CRISPR spacer
cataataatacctataaataagcaatacacaacttttaatact	Protospacer
*******************************************

10. spacer 1.2|60867|43|NZ_CP022710|PILER-CR matches to NZ_LT960778 (Lactobacillus sakei strain FLEC01 plasmid 2, complete sequence) position: , mismatch: 0, identity: 1.0

cataataatacctataaataagcaatacacaacttttaatact	CRISPR spacer
cataataatacctataaataagcaatacacaacttttaatact	Protospacer
*******************************************

11. spacer 1.2|60867|43|NZ_CP022710|PILER-CR matches to NZ_LT960782 (Lactobacillus sakei strain J64 plasmid 2, complete sequence) position: , mismatch: 0, identity: 1.0

cataataatacctataaataagcaatacacaacttttaatact	CRISPR spacer
cataataatacctataaataagcaatacacaacttttaatact	Protospacer
*******************************************

12. spacer 1.2|60867|43|NZ_CP022710|PILER-CR matches to NZ_LT907987 (Lactobacillus sakei strain T332 plasmid p332A2, complete sequence) position: , mismatch: 0, identity: 1.0

cataataatacctataaataagcaatacacaacttttaatact	CRISPR spacer
cataataatacctataaataagcaatacacaacttttaatact	Protospacer
*******************************************

13. spacer 1.2|60867|43|NZ_CP022710|PILER-CR matches to AP018700 (Lactobacillus curvatus NFH-Km12 plasmid NFH-Km12_plasmid1 DNA, complete genome) position: , mismatch: 0, identity: 1.0

cataataatacctataaataagcaatacacaacttttaatact	CRISPR spacer
cataataatacctataaataagcaatacacaacttttaatact	Protospacer
*******************************************

14. spacer 1.1|60799|42|NZ_CP022710|PILER-CR matches to NZ_LT960782 (Lactobacillus sakei strain J64 plasmid 2, complete sequence) position: , mismatch: 1, identity: 0.976

ggaaggcacgataaatattttgtttacttgtattaatgtaaa	CRISPR spacer
agaaggcacgataaatattttgtttacttgtattaatgtaaa	Protospacer
.*****************************************

15. spacer 1.1|60799|42|NZ_CP022710|PILER-CR matches to NZ_AP017932 (Lactobacillus sakei strain LK-145 plasmid pLs145-a, complete sequence) position: , mismatch: 1, identity: 0.976

ggaaggcacgataaatattttgtttacttgtattaatgtaaa	CRISPR spacer
ggaaggtacgataaatattttgtttacttgtattaatgtaaa	Protospacer
******.***********************************

16. spacer 1.1|60799|42|NZ_CP022710|PILER-CR matches to NZ_CP025207 (Lactobacillus sakei strain WiKim0074 plasmid pLSW74_1, complete sequence) position: , mismatch: 1, identity: 0.976

ggaaggcacgataaatattttgtttacttgtattaatgtaaa	CRISPR spacer
ggaaggtacgataaatattttgtttacttgtattaatgtaaa	Protospacer
******.***********************************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 7466 : 19651 14 Enterococcus_phage(22.22%) transposase NA
DBSCAN-SWA_2 60998 : 69518 10 Enterococcus_phage(14.29%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage