CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP022741	Vibrio qinghaiensis strain Q67 chromosome 1, complete sequence	3 crisprs	DEDDh,cas3,csa3,csx1,DinG,cas6f,csx23,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cas7f,cas5f,cas8f,cas3f,cas1,RT,PrimPol	0	17	3	0
NZ_CP022742	Vibrio qinghaiensis strain Q67 chromosome 2, complete sequence	0 crisprs	cas3,csa3	0	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP022741_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022741_1

1572959-1573767

TypeIII

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	PILER-CR
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRT

13 spacers

cas6f,csx23,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cas7f,cas5f

The CRISPR arrays of NZ_CP022741_1

>merge|NZ_CP022741|1|1572959-1573767|PILER-CR,CRISPRCasFinder,CRT
TTTCTAAGCTGCCTGTGCGGCAGTGAACAAAATGAATTGTTGAACATCCTTTACACACACTTTCTAAGCTGCCTGTGCGGCAGTGAACTATAACCAAGTACTTTCTGAAGACTTCATTCGTTTCTAAGCTGCCTGTGCGGCAGTGAACATGAGTTTTGAAAATAAAAGTTTTGTGCCACATTTCTAAGCTGCCTGTGCGGCAGTGAACTTGATTGAAGCATTACGTCAACATCAACTTAATTTCTAAGCTGCCTGTGCGGCAGTGAACCTAGCTCTCGTGTAGACATTACCGCCTCTACTTTTCTAAGCTGCCTGTGCGGCAGTGAACAAAAGCATTGAGACGGTGTCTAGCCTTGGATTTTTCTAAGCTGCCTGTGCGGCAGTGAACTGAACGGATAGCCATTGGCACTTTCATGCCTATTTCTAAGCTGCCTGTGCGGCAGTGAACCCGACTTGTCGGATTGTCCACACTTTTTAGGCTTTCTAAGCTGCCTGTGCGGCAGTGAACTTTAACGCATCTTTTAACCGGAGAAGAGAAATTTTCTAAGCTGCCTGTGCGGCAGTGAACAACGGAGATAAGAAAATGAACGCACTAGAAATTTTCTAAGCTGCCTGTGCGGCAGTGAACATTATTATCACATCAGCTAAGCAATGACGCGATTTCTAAGCTGCCTGTGCGGCAGTGAACCATTGGCTGAAATTGCATTGGGTGTTTTTGTAGTTTCTAAGCTGCCTGTGCGGCAGTGAACTACTCGAAAATGAGCGACCCGCTTTACTTTGATTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_CP022741|1|1|1572959-1573767|PILER-CR
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAAATGAATTGTTGAACATCCTTTACACACAC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TATAACCAAGTACTTTCTGAAGACTTCATTCG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATGAGTTTTGAAAATAAAAGTTTTGTGCCACA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTGATTGAAGCATTACGTCAACATCAACTTAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CTAGCTCTCGTGTAGACATTACCGCCTCTACT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAAAGCATTGAGACGGTGTCTAGCCTTGGATT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TGAACGGATAGCCATTGGCACTTTCATGCCTA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CCGACTTGTCGGATTGTCCACACTTTTTAGGC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTTAACGCATCTTTTAACCGGAGAAGAGAAAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AACGGAGATAAGAAAATGAACGCACTAGAAAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATTATTATCACATCAGCTAAGCAATGACGCGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CATTGGCTGAAATTGCATTGGGTGTTTTTGTAG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TACTCGAAAATGAGCGACCCGCTTTACTTTGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_CP022741|1|1|1572959-1573767|CRISPRCasFinder
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAAATGAATTGTTGAACATCCTTTACACACAC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TATAACCAAGTACTTTCTGAAGACTTCATTCG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATGAGTTTTGAAAATAAAAGTTTTGTGCCACA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTGATTGAAGCATTACGTCAACATCAACTTAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CTAGCTCTCGTGTAGACATTACCGCCTCTACT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAAAGCATTGAGACGGTGTCTAGCCTTGGATT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TGAACGGATAGCCATTGGCACTTTCATGCCTA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CCGACTTGTCGGATTGTCCACACTTTTTAGGC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTTAACGCATCTTTTAACCGGAGAAGAGAAAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AACGGAGATAAGAAAATGAACGCACTAGAAAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATTATTATCACATCAGCTAAGCAATGACGCGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CATTGGCTGAAATTGCATTGGGTGTTTTTGTAG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TACTCGAAAATGAGCGACCCGCTTTACTTTGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_CP022741|1|1|1572959-1573767|CRT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAAATGAATTGTTGAACATCCTTTACACACAC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TATAACCAAGTACTTTCTGAAGACTTCATTCG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATGAGTTTTGAAAATAAAAGTTTTGTGCCACA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTGATTGAAGCATTACGTCAACATCAACTTAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CTAGCTCTCGTGTAGACATTACCGCCTCTACT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAAAGCATTGAGACGGTGTCTAGCCTTGGATT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TGAACGGATAGCCATTGGCACTTTCATGCCTA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CCGACTTGTCGGATTGTCCACACTTTTTAGGC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTTAACGCATCTTTTAACCGGAGAAGAGAAAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AACGGAGATAAGAAAATGAACGCACTAGAAAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATTATTATCACATCAGCTAAGCAATGACGCGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CATTGGCTGAAATTGCATTGGGTGTTTTTGTAG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TACTCGAAAATGAGCGACCCGCTTTACTTTGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022741.1\|WP_094500159.1\|1584638_1585532_-\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	pfam09614_cas5f_CAS-I-F	gnl\|CDD\|378221
NZ_CP022741.1\|WP_094500158.1\|1583595_1584627_-\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	cd09677_cas7f_CAS-I-F	gnl\|CDD\|378222
NZ_CP022741.1\|WP_094500151.1\|1574484_1574943_-\|hypothetical-protein	csx23	mkCas0160_csx23_CAS-III-D	unknown
NZ_CP022741.1\|WP_010318151.1\|1568795_1569395_+\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NZ_CP022741.1\|WP_094500143.1\|1565137_1565551_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022741.1\|WP_094500154.1\|1576480_1577344_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	gnl\|CDD\|274210
NZ_CP022741.1\|WP_094500156.1\|1578509_1580348_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	gnl\|CDD\|187810
NZ_CP022741.1\|WP_094500150.1\|1573897_1574449_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|378224
NZ_CP022741.1\|WP_094500153.1\|1576042_1576477_-\|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	cd09749_cmr5gr11_CAS-III-B	gnl\|CDD\|187880
NZ_CP022741.1\|WP_094500155.1\|1577367_1578507_-\|CRISPR-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl\|CDD\|187879
NZ_CP022741.1\|WP_094500149.1\|1571107_1572244_+\|cytochrome-d-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|129307
NZ_CP022741.1\|WP_013856709.1\|1572472_1572835_-\|RidA-family-protein	unknown	unknown	gnl\|CDD\|100007
NZ_CP022741.1\|WP_094131687.1\|1572256_1572358_+\|cytochrome-bd-I-oxidase-subunit-CydX	unknown	unknown	gnl\|CDD\|369733
NZ_CP022741.1\|WP_094500148.1\|1569515_1571096_+\|cytochrome-d-terminal-oxidase-subunit-1	unknown	unknown	gnl\|CDD\|185052
NZ_CP022741.1\|WP_094500146.1\|1567196_1568060_+\|DUF692-domain-containing-protein	unknown	unknown	gnl\|CDD\|235447
NZ_CP022741.1\|WP_094500147.1\|1568052_1568799_+\|DUF2063-domain-containing-protein	unknown	unknown	gnl\|CDD\|225760
NZ_CP022741.1\|WP_094500157.1\|1582947_1583586_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	pfam09618_cas6f_CAS-I-F	gnl\|CDD\|378224
NZ_CP022741.1\|WP_094500144.1\|1565948_1566905_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293805
NZ_CP022741.1\|WP_094500145.1\|1566894_1567209_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022741.1\|WP_094500152.1\|1574942_1576043_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	gnl\|CDD\|224520

Protein	Function_ID	Function_description	E-value
NZ_CP022741.1\|WP_094500159.1\|1584638_1585532_-\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	5.84831e-149
NZ_CP022741.1\|WP_094500158.1\|1583595_1584627_-\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NZ_CP022741.1\|WP_010318151.1\|1568795_1569395_+\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	1.46897e-12
NZ_CP022741.1\|WP_094500154.1\|1576480_1577344_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|274210	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4. This model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (pfam03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module.	3.39123e-65
NZ_CP022741.1\|WP_094131687.1\|1572256_1572358_+\|cytochrome-bd-I-oxidase-subunit-CydX	gnl\|CDD\|369733	pfam08173, YbgT_YccB, Membrane bound YbgT-like protein. This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in E. coli. Members have a consensus motif (MWYFXW) which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to Proteobacteria.	7.63151e-08
NZ_CP022741.1\|WP_094500156.1\|1578509_1580348_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl\|CDD\|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	2.322e-54
NZ_CP022741.1\|WP_094500150.1\|1573897_1574449_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|378224	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	6.7028e-73
NZ_CP022741.1\|WP_094500155.1\|1577367_1578507_-\|CRISPR-associated-protein-Cmr3	gnl\|CDD\|187879	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	1.22917e-95
NZ_CP022741.1\|WP_094500149.1\|1571107_1572244_+\|cytochrome-d-ubiquinol-oxidase-subunit-II	gnl\|CDD\|129307	TIGR00203, ubiquinol_oxidase_subunit_2, cytochrome d oxidase, subunit II (cydB). part of a two component cytochrome D terminal complex. Terminal reaction in the aerobic respiratory chain. [Energy metabolism, Electron transport].	7.08565e-142
NZ_CP022741.1\|WP_094500148.1\|1569515_1571096_+\|cytochrome-d-terminal-oxidase-subunit-1	gnl\|CDD\|185052	PRK15097, PRK15097, cytochrome bd-I ubiquinol oxidase subunit CydA.	0
NZ_CP022741.1\|WP_094500153.1\|1576042_1576477_-\|type-III-B-CRISPR-module-associated-protein-Cmr5	gnl\|CDD\|187880	cd09749, Cmr5_III-B, CRISPR/Cas system-associated protein Cmr5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; signature gene for subtype III-B.	9.16121e-38
NZ_CP022741.1\|WP_094500146.1\|1567196_1568060_+\|DUF692-domain-containing-protein	gnl\|CDD\|235447	PRK05409, PRK05409, hypothetical protein; Provisional.	1.53378e-120
NZ_CP022741.1\|WP_094500147.1\|1568052_1568799_+\|DUF2063-domain-containing-protein	gnl\|CDD\|225760	COG3219, COG3219, Uncharacterized protein conserved in bacteria [Function unknown].	8.80968e-13
NZ_CP022741.1\|WP_094500157.1\|1582947_1583586_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|378224	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	4.45561e-61
NZ_CP022741.1\|WP_094500144.1\|1565948_1566905_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293805	cd07719, arylsulfatase_AtsA-like_MBL-fold, Pseudoalteromonas carrageenovora arylsulfatase AtsA and related proteins; MBL-fold metallo-hydrolase domain. Arylsulfatase (also known as aryl-sulfate sulfohydrolase, EC 3.1.6.1). Pseudoalteromonas carrageenovora arylsulfatase AtsA may function as a glycosulfohydrolase involved with desulfation of sulfated polysaccharides, which catalyzes hydrolysis of the arylsulfate ester bond, producing the aryl compounds and inorganic sulfate. CD also includes some sequences annotated as ribonucleases. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily.	9.92328e-57
NZ_CP022741.1\|WP_013856709.1\|1572472_1572835_-\|RidA-family-protein	gnl\|CDD\|100007	cd06150, YjgF_YER057c_UK114_like_2, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.	2.26714e-47
NZ_CP022741.1\|WP_094500152.1\|1574942_1576043_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl\|CDD\|224520	COG1604, COG1604, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.14572e-39

>NZ_CP022741.1|WP_013856709.1|1572472_1572835_-|RidA-family-protein
MTIHRINPSKRWSDITVFNGIAHFVEVADSDTKADMKGQVEQILAQAEQQLTAIDSDRSRVLSVTIYVTDFAHFAALNEVWDSWFPEGCAPSRACVQAQLASPDYLVEMAFVAAAGPKFQ
>NZ_CP022741.1|WP_094131687.1|1572256_1572358_+|cytochrome-bd-I-oxidase-subunit-CydX
MWYFCWVLGVLLACALGIINGLWLEQAEHFDES
>NZ_CP022741.1|WP_094500149.1|1571107_1572244_+|cytochrome-d-ubiquinol-oxidase-subunit-II
MFDYETLRLLTWAIVGVLLIGFIITDGFDMGVAALLPILGRSDVERRVMINSIAPHWDGNQVWLITAGGAIFAIWPLVYATAFSSFYLAMMLLLAALWLRPIGMDYRSKIDNPSWRKACDNALFISGVVPPLIFGIGFGNLLVGVPFQLNNLLMLDYQGHFWDLFTPFPLLCGLLSLAIVVTQGATFLQLKTCDALRERAHNASVVSASIAVALFLIGGFFAANMTGYIIVSPIVTDAASNPLHKEVVSVARHLLHNYQAHAMLWLIPCVGIASLLACIWASLKRASGWAFLFSSLAIACIILTAGVALFPMIMPSSLMPSHSLTIWDATSSQKTLNIITLVAILVVPVILSYTAWGYYKMFGRLNDDYIRNHSVSLY
>NZ_CP022741.1|WP_094500148.1|1569515_1571096_+|cytochrome-d-terminal-oxidase-subunit-1
MLTDVVELSRFQFASTALYHFIFVPLTIGLSFLLAIMESLYVMTGKTVYKDMTRFWGKLFGINFAVGVATGLTMEFQFGTNWAYYSHYVGDIFGAPLAIEALIAFFLESTLVGLFFFGWERLSKRQHLSVTWLTALGSNFSGLWILMANGWMQNPVGAEFNYQTMRMEMTNFTDVIFNPVTQVKFVHTVAAGYTTGALFIMGISAYYLLKMRDLPFARRSFAVACAFGMASISATLLLGDESGYTLGEVQQVKLAAIEAEWDTEQAPASFTLFGLPNQETMHTDAAIKVPYLMGIIATRSLDEPVIGLKDLMARSEERIRNGMLAYGLLEALRNGDDSPQNVAQFETLKEDLGYGFLLKKYTDKVTDATESQIKQAAQDTIPQVAPLFWSFRIMVACGMAMFAVIGLCFIQLCRRKIGTQPWLLKAALFAIPLPWIASEAGWFVAEFGRQPWAIGEVLPVNMAVSNLSPSDLWISLGLVYLLYSAFLVVEMYLMVKFARRGPSALHTGRYHFETQDGHGSLSHVHH
>NZ_CP022741.1|WP_010318151.1|1568795_1569395_+|DoxX-family-protein
MIHSALNWYDGVIEKFKKFDFIVLLAIRLFLVPVIFVGAHSKVVGFAGTVAWFGASTADGGLNLPFPELLAFLAAATEVLGCICIALGLFTRIMAIPMIFMMSVASAMVHWKHGWDAIATSSMEATVRLNGFIEWLAVNFPGRYNYITELGDPVMLNNGMEFAATYFVMLMVLFIYGGGRYVSLDYWLKKPFTRTPQTA
>NZ_CP022741.1|WP_094500147.1|1568052_1568799_+|DUF2063-domain-containing-protein
MLKPPMNMSMSMYALTCVIRSPIAQGEPPCRYREFIRENIYSVITHTFPLFCAQLNEETLYILTDEWLVIHGAMEPEFHQIATEFVQFIQQHNGHNADINLSAEQIALLEYEWIAFNAEMDSAHVPDLNVWSDDAEAQPEAFFIQLNPTLKLVEVPFLVHPESVTFLTQEQKTVCYGVFRHASHQVVSQKLREVDIALIQMIQNAPAQSLTQLEQQIAQHLSNFHFLAWVQTFQQQGLISLYLLGETL
>NZ_CP022741.1|WP_094500146.1|1567196_1568060_+|DUF692-domain-containing-protein
MRAIDRTSKGIGLRSEHVDLLCQLPDHPDIDFLELAPENWMNMGGLKREQLQQIAKHYPLVAHGLSLSIGDGQPLNKAFVKKVAAFLDEFNIDIYSEHLSFSRDAQGYLYELLPIPRYKESIAYLVDRIHCVQDIVQRPLVLENISYYHSYGKEIPEGEFIAEIVERSGCQLLIDINNVYVNSRNHNYCPFDMLATLPSEAIGYYHIAGHLKEREDFLLDTHGKPVQQEVIDLARYAYALQGSRPLLLERDHHVPPLVVLTEELRTIHHDIMQPAPSLVIDVERSHA
>NZ_CP022741.1|WP_094500145.1|1566894_1567209_+|hypothetical-protein
MNCKIALSIAMTSAIALHSGMSFAETSTEAPVSAQPTSQNGGKCAAGKCGTEKRFEKQDLKSDPQGRLVRARDGKCGLTAEGIAPSAETITLTNSKITGGVCGQ
>NZ_CP022741.1|WP_094500144.1|1565948_1566905_+|MBL-fold-metallo-hydrolase
MKQPLKALVLAISLSCGAIGAYANSLEPLDKEFTLQVLGSGGPISDDLRSSSAEVIWWKGKSKIMIDAGGGAYLRFGQSGSKLEDLDFLGITHFHTDHVADLPALLKGGYFFNRQDPLDIAGPQAGSAFPSLSGYMDALFNSKDGAYAYLNGLYDGSDGLFPVTITDVPYKTTTPTKVYQQDGLTIYALGIPHGDVPCLAYRIESDQGVIVISADQNGSHQAFLDFAQGADILVMPMAIHESADEVSAFMHAKPSVIGEIAAKINPKLLVLNHWMGVGLKHKSESTKIIKQFYHGEVIAARDLSSYPMSSVKEITHEL
>NZ_CP022741.1|WP_094500143.1|1565137_1565551_-|hypothetical-protein
MFMMKPSYYVIPMLIAFNVHAADSQCDVISSQLHDVSNGSEAVEHSGGYSVRDNPPIRCAEVVFKTKQSYDKVVAWMNDDFTAIYVDGSEVTSNMVRFREDDVQAGYVKIKANQPISAYVCFGQSSIPINKIECSVQ
>NZ_CP022741.1|WP_094500150.1|1573897_1574449_-|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MDSYIDIHLRPDAEMNEAELGSKVFTKFHKALVKLNTNQIAMSFPEANLKLGQLFRVHGSVSLLNDLQGLCWLGPLVGYCQISEVLSVPEQVQYRVISAKRRNLSSAKLRRLIARGSINKEGEQRYKEKMSNQSINAPYLDLQSGSTGQTYRKFFEFGEKQPLPVSGKFDSYGLSHTTTVPWF
>NZ_CP022741.1|WP_094500151.1|1574484_1574943_-|hypothetical-protein
MNTLKRIWLFLLVMFVVPLLIIIGIGFCTQQSEGFIYSILISIATSLIAAGVVYWFIDNRLNDLIKTNDEITVVLKSPNRKNIKCPPMSRKDFCRSEIMGYIGMVTGGPNFKMDRERFIIIGKQICETQKTKGNQEFIVDCTDAEMEQFGAE
>NZ_CP022741.1|WP_094500152.1|1574942_1576043_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MTALVRNKIQSAFCQTDSANPSLLLQKGLLEANQKTGHLEEIVKLPASSEYKNTFNRWFDLSQDENRFSQTAMTLENRLLIGLTGNAALETGCSLSRNYGMPYIPGSSVKGIARAWANQHLAGHSDELEQLFGTADSEQPYRVSGLVTFHDAWWIPDPAKKEHKPFVLDVVTTHHQAYYNGTQAEPSDKDSPIPNHLLAVQGSFLFVLEGEPAAIELCQTLLEKALANNGIGAKTAAGYGYMKVDPALMQRLLDEYEKRLPQDVREHRQAEAQRRNEQQLEAAAKAELEMPPSLVISVINEKYQTQRDNQSFRDKVEAWIDRAIEAWNIDNRKSLASCLKEAGYIPGKKKKNYQISKDRLQQLKGE
>NZ_CP022741.1|WP_094500153.1|1576042_1576477_-|type-III-B-CRISPR-module-associated-protein-Cmr5
MQPRSQIVATAAFERINSRKDKSIEENKKYATLAHKLPTMVLQNGLAQATGFLLAKSEDHHKALLEDLTAVFKQVDAKLANIADDDKGEALHNEIIQSDLHQIMRYTREALEIAGWLRRYVQGVLKIDATGEVNDDHHNPAEAK
>NZ_CP022741.1|WP_094500154.1|1576480_1577344_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MSFHVYHLFSQTILHCGSGQSVGIVDQPIARERASNLPIVPGSTVRGVLKAHISQKESDLSQSLFGYDKQDGKLSCTGALSITDAHLLLLPVRTVYGILAYATCPFILQRYKKDRKSDLTVPTPAKDQALYPKGNPNHQDDLMVLEDLDLKAQECEHTQQWAEYIAQTLDAKESAYYSDISKRIIVLPDTVFSFLAETATEIRTRIRINQKTGVVDKGALWTEESLPAESVLWGVYSVDAPRLNDQNGDKRLMFNDIINNKPLLQMGGNMGTGNGLVQFIAQSGKGE
>NZ_CP022741.1|WP_094500155.1|1577367_1578507_-|CRISPR-associated-protein-Cmr3
MLYYLIEPKDPLIIRSGRPFEEISDAQAARFPPPSTVAGALRNIHARSNGKALNNELLKLAVTGPLAVKRPINGDAPSEEHILVPKPADVQYFYDQQTQLTHLVRSKPMAFAEGEGCDLPNGLLPLFAENAPDGKPVSGPNWWSFNDLAAWRKGEAVSFERICQNGWMPAEPDIRTHIAINNHSRNVESGKLFQTTGLSMWQQRADHQPFPDACVSILAGIDGDITLPLLNLGGERRLAEVEACTLWPSLPSDLAQSITKAKGFTLTFLTPVLFNQGWLPSWLNDDLVGTPPCCQSLTVKLRAAALERWIPQSGWDLVNNTPRAAQKMIPAGATYWFEIKGDATDEDIRSLCLAHFCDDPQSNLNGFGLALPAAYQFTI
>NZ_CP022741.1|WP_094500156.1|1578509_1580348_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MEYLVAISIGPVQSFIEAGRRSQDLWCGSWLLSEVSRAVALSLHEEQSDCLIFPNPKNPDIDLQPQDPDSDSQIEVEANIANVVRAVIQVDDISQVRDIVENAKQAAEARLMQILDTIRHKKLESFTIDWARFEQQKDGILDIYAAWVKFEAGQYGKASERLGKLLAARKQTKDFKPIQDTKSGLFKSTLDGANNTLTEQVNNKEYQHQLRLSQGEELDILGLVKRSAGHFEQFTPFSRVVVEPWLSSLSSEQLNTLQSNYQSFVKAGLATTVKGNGDRYQAFPYDGEYLFTSRIEQEKDLEKGTKKALLDCLSTIGKESGSPMTYGVLLKADGDRMGELLAQAKTHDDSKAISKALHKFATSVRKTLQDHGGHAIYAGGDDVLAFVPLAQAMTCAKQLADDFKEKMKVIAAELKLSEALYPTLSVGLAIGHFVQPMRQLRARAIAAEKHAKGNKGNKGNKEHKPRNALAIHLGIRSGHEITWRCRWDDDETLNALTDFTHAFAQGWMPTRIMQEVREMAVHLKWTTGQKELAGIRESELERMLARADFNVSVEESGKTPEQIKESKKAALEKLKSQLRAQASGYSLDELANLLILARWLSAKTTADIGGEE
>NZ_CP022741.1|WP_094500157.1|1582947_1583586_-|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MNYYQEITLLPDVDISLGFIWQNVFQQVHIAFVEHKIDENQSAIAIGFPEYGKVGFPLGNKLRLFAKEQAILEKLAIEKWLARLEDYAHVKAIKPVPTEVTYASFMRKHVKSPERIERNMQQKATLWAAKSGKPLEECLLELEKTKPTTLCSLPFIYLHSQQTKQRSPEKNSKFPLFIEMQRQSASQVGQFDCYGLSAKANRQSALATVPHF
>NZ_CP022741.1|WP_094500158.1|1583595_1584627_-|type-I-F-CRISPR-associated-protein-Csy3
MAKNNDTASVLAFEKKLVPSDAYLFGTNWETKEQITPLSLQEKSVRGTISNRLKAAVQNDPVKLNAEVEKANLQRVDACALGQDQDTLKLHFTLKVLGGLAQPSACNNALFKQSYSAAVSQYITKYGCFELAKRYATNLANARFLWRNRVGAEDIEVQVKALNKGAEQAWTFNAKQFSTRHFDHNDSQINSLADRIAQALTSEADHLMLQIDCYAKVGKAQEVYPSEELVLDKGNSKSKKSKILYAVNDNAAMHSQKIGNALRSIDTWYPDYSLPEQTAGAIAIEPYGAVTNLGKAFRTPKDKQDFYTFFDKWARGSELSREEDEHYVVAVLVRGGVFGESDK
>NZ_CP022741.1|WP_094500159.1|1584638_1585532_-|type-I-F-CRISPR-associated-protein-Csy2
MRLLILPHIKIHNANALSSPFTIGFPAMTAWLGFVHALERKLNQTGLEELMFRSAAVVSHQFDLQTHKGEGDFVHSIIGTGNPLDKDGSRSAFIEEARCHLDVSLVIECDGNDDELDHENFVVRLQDTIATMKVASGDVLSLQLPFLTTVKIDDELETAKLLRQLMPGYVLLERRDLMIEAMKQGHDALDALLSHLTVDHHCEQLKDETVVWRSQRKTAGWIVPIATGFQGISPLGEAKNQRDPSVPHRFAESVVTLGEFVMAYKIKHLDDMLWHYHSDLENNLYLCQQNNLINEHQ

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Crispr_ID: NZ_CP022741_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022741_2

1581984-1582791

TypeIII

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	PILER-CR
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRT

13 spacers

cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx23,cas6f,cas7f,cas5f,cas8f,cas3f,cas1

The CRISPR arrays of NZ_CP022741_2

>merge|NZ_CP022741|2|1581984-1582791|PILER-CR,CRISPRCasFinder,CRT
TTTCTAAGCTGCCTGTGCGGCAGTGAACTATGAGGGTTTAGTTTCTGCTGCTGAGTTTCTTTTCTAAGCTGCCTGTGCGGCAGTGAACGGGAGGGCTCTAGATTGCTAACGCTTGGTAATTTTCTAAGCTGCCTGTGCGGCAGTGAACCAGGGCGTTTTTTGAGCGGTTTGATTTGGATTTTTCTAAGCTGCCTGTGCGGCAGTGAACATTAACGCAGAAATAGCGCGCTTGCTAGCAACTTTCTAAGCTGCCTGTGCGGCAGTGAACTCAATTGCTTGAAGCGCGGTTTCCGCCGTGGCTTTCTAAGCTGCCTGTGCGGCAGTGAACAAATGGAAAGTTTGTATTCCACGACTATCAATTTTCTAAGCTGCCTGTGCGGCAGTGAACAACTCGCCCACGTTGCCGGAGTTCGCCCACTGTTTCTAAGCTGCCTGTGCGGCAGTGAACTCATTCACCGCCCGTTTAACCACCGTTTAAAATTTCTAAGCTGCCTGTGCGGCAGTGAACTAGAGAAAGTGCCAGCAGGGTCAGTTTCTAGCTTTCTAAGCTGCCTGTGCGGCAGTGAACAAAATGAGTGGCAACAAGAGTTTGAGTGTGATTTTCTAAGCTGCCTGTGCGGCAGTGAACAAAATGAGTGGCAACAAGAGTTTGAGTGTGATTTTCTAAGCTGCCTGTGCGGCAGTGAACATTTTGTCATTGGAAGCCTGCTCTGACGAGATTTTCTAAGCTGCCTGTGCGGCAGTGAACAGAGCCAACACAAACATTTGCTTTCATGGAGTTTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_CP022741|2|2|1581984-1582791|PILER-CR
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TATGAGGGTTTAGTTTCTGCTGCTGAGTTTCT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GGGAGGGCTCTAGATTGCTAACGCTTGGTAAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CAGGGCGTTTTTTGAGCGGTTTGATTTGGATT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATTAACGCAGAAATAGCGCGCTTGCTAGCAAC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCAATTGCTTGAAGCGCGGTTTCCGCCGTGGC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAATGGAAAGTTTGTATTCCACGACTATCAAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AACTCGCCCACGTTGCCGGAGTTCGCCCACTG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCATTCACCGCCCGTTTAACCACCGTTTAAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TAGAGAAAGTGCCAGCAGGGTCAGTTTCTAGC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAAATGAGTGGCAACAAGAGTTTGAGTGTGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAAATGAGTGGCAACAAGAGTTTGAGTGTGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATTTTGTCATTGGAAGCCTGCTCTGACGAGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AGAGCCAACACAAACATTTGCTTTCATGGAGT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_CP022741|2|2|1581984-1582791|CRISPRCasFinder
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TATGAGGGTTTAGTTTCTGCTGCTGAGTTTCT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GGGAGGGCTCTAGATTGCTAACGCTTGGTAAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CAGGGCGTTTTTTGAGCGGTTTGATTTGGATT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATTAACGCAGAAATAGCGCGCTTGCTAGCAAC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCAATTGCTTGAAGCGCGGTTTCCGCCGTGGC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAATGGAAAGTTTGTATTCCACGACTATCAAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AACTCGCCCACGTTGCCGGAGTTCGCCCACTG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCATTCACCGCCCGTTTAACCACCGTTTAAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TAGAGAAAGTGCCAGCAGGGTCAGTTTCTAGC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAAATGAGTGGCAACAAGAGTTTGAGTGTGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAAATGAGTGGCAACAAGAGTTTGAGTGTGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATTTTGTCATTGGAAGCCTGCTCTGACGAGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AGAGCCAACACAAACATTTGCTTTCATGGAGT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_CP022741|2|2|1581984-1582791|CRT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TATGAGGGTTTAGTTTCTGCTGCTGAGTTTCT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GGGAGGGCTCTAGATTGCTAACGCTTGGTAAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CAGGGCGTTTTTTGAGCGGTTTGATTTGGATT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATTAACGCAGAAATAGCGCGCTTGCTAGCAAC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCAATTGCTTGAAGCGCGGTTTCCGCCGTGGC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAATGGAAAGTTTGTATTCCACGACTATCAAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AACTCGCCCACGTTGCCGGAGTTCGCCCACTG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCATTCACCGCCCGTTTAACCACCGTTTAAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TAGAGAAAGTGCCAGCAGGGTCAGTTTCTAGC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAAATGAGTGGCAACAAGAGTTTGAGTGTGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAAATGAGTGGCAACAAGAGTTTGAGTGTGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATTTTGTCATTGGAAGCCTGCTCTGACGAGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AGAGCCAACACAAACATTTGCTTTCATGGAGT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022741.1\|WP_094500165.1\|1592767_1593685_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022741.1\|WP_094500159.1\|1584638_1585532_-\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	pfam09614_cas5f_CAS-I-F	gnl\|CDD\|378221
NZ_CP022741.1\|WP_094500158.1\|1583595_1584627_-\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	cd09677_cas7f_CAS-I-F	gnl\|CDD\|378222
NZ_CP022741.1\|WP_094500154.1\|1576480_1577344_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	gnl\|CDD\|274210
NZ_CP022741.1\|WP_094500149.1\|1571107_1572244_+\|cytochrome-d-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|129307
NZ_CP022741.1\|WP_094500150.1\|1573897_1574449_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|378224
NZ_CP022741.1\|WP_094500162.1\|1591733_1592048_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022741.1\|WP_010318159.1\|1585528_1586800_-\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	pfam09611_cas8f_CAS-I-F	gnl\|CDD\|378220
NZ_CP022741.1\|WP_094500163.1\|1592163_1592538_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022741.1\|WP_094500155.1\|1577367_1578507_-\|CRISPR-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl\|CDD\|187879
NZ_CP022741.1\|WP_094500156.1\|1578509_1580348_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	gnl\|CDD\|187810
NZ_CP022741.1\|WP_094500161.1\|1590173_1591163_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NZ_CP022741.1\|WP_094500164.1\|1592547_1592781_-\|type-III-secretion-protein	unknown	unknown	unknown
NZ_CP022741.1\|WP_094500153.1\|1576042_1576477_-\|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	cd09749_cmr5gr11_CAS-III-B	gnl\|CDD\|187880
NZ_CP022741.1\|WP_094500160.1\|1586799_1590177_-\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|187804
NZ_CP022741.1\|WP_094131687.1\|1572256_1572358_+\|cytochrome-bd-I-oxidase-subunit-CydX	unknown	unknown	gnl\|CDD\|369733
NZ_CP022741.1\|WP_094500151.1\|1574484_1574943_-\|hypothetical-protein	csx23	mkCas0160_csx23_CAS-III-D	unknown
NZ_CP022741.1\|WP_094500157.1\|1582947_1583586_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	pfam09618_cas6f_CAS-I-F	gnl\|CDD\|378224
NZ_CP022741.1\|WP_013856709.1\|1572472_1572835_-\|RidA-family-protein	unknown	unknown	gnl\|CDD\|100007
NZ_CP022741.1\|WP_094500152.1\|1574942_1576043_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	gnl\|CDD\|224520

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_CP022741.1\|WP_094500159.1\|1584638_1585532_-\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	pfam09614_cas5f_CAS-I-F	1.3e-104	344.5	0.0
NZ_CP022741.1\|WP_094500158.1\|1583595_1584627_-\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	cd09677_cas7f_CAS-I-F	1.6e-138	456.4	1.6
NZ_CP022741.1\|WP_094500154.1\|1576480_1577344_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	1.6e-60	199.8	0.0
NZ_CP022741.1\|WP_094500160.1\|1586799_1590177_-\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	6.4e-288	952.6	16.1
NZ_CP022741.1\|WP_094500150.1\|1573897_1574449_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	3.3e-51	168.7	0.0
NZ_CP022741.1\|WP_010318159.1\|1585528_1586800_-\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	pfam09611_cas8f_CAS-I-F	2.7e-109	360.5	0.6
NZ_CP022741.1\|WP_094500155.1\|1577367_1578507_-\|CRISPR-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	3.6e-99	327.4	0.0
NZ_CP022741.1\|WP_094500156.1\|1578509_1580348_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	2.1e-59	196.3	2.2
NZ_CP022741.1\|WP_094500161.1\|1590173_1591163_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	1.2e-144	476.0	0.7
NZ_CP022741.1\|WP_094500153.1\|1576042_1576477_-\|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	cd09749_cmr5gr11_CAS-III-B	1.6e-35	116.8	1.1
NZ_CP022741.1\|WP_094500151.1\|1574484_1574943_-\|hypothetical-protein	csx23	mkCas0160_csx23_CAS-III-D	1.9e-15	51.4	0.1
NZ_CP022741.1\|WP_094500157.1\|1582947_1583586_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	pfam09618_cas6f_CAS-I-F	2.3e-55	182.2	0.2
NZ_CP022741.1\|WP_094500152.1\|1574942_1576043_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	8.7e-40	131.6	0.0

Protein	Function_ID	Function_description	E-value
NZ_CP022741.1\|WP_094500159.1\|1584638_1585532_-\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	5.84831e-149
NZ_CP022741.1\|WP_094500158.1\|1583595_1584627_-\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NZ_CP022741.1\|WP_094500154.1\|1576480_1577344_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|274210	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4. This model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (pfam03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module.	3.39123e-65
NZ_CP022741.1\|WP_094500149.1\|1571107_1572244_+\|cytochrome-d-ubiquinol-oxidase-subunit-II	gnl\|CDD\|129307	TIGR00203, ubiquinol_oxidase_subunit_2, cytochrome d oxidase, subunit II (cydB). part of a two component cytochrome D terminal complex. Terminal reaction in the aerobic respiratory chain. [Energy metabolism, Electron transport].	7.08565e-142
NZ_CP022741.1\|WP_094500150.1\|1573897_1574449_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|378224	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	6.7028e-73
NZ_CP022741.1\|WP_010318159.1\|1585528_1586800_-\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|378220	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.	3.98584e-125
NZ_CP022741.1\|WP_094500155.1\|1577367_1578507_-\|CRISPR-associated-protein-Cmr3	gnl\|CDD\|187879	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	1.22917e-95
NZ_CP022741.1\|WP_094500156.1\|1578509_1580348_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl\|CDD\|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	2.322e-54
NZ_CP022741.1\|WP_094500161.1\|1590173_1591163_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	4.14046e-172
NZ_CP022741.1\|WP_094500153.1\|1576042_1576477_-\|type-III-B-CRISPR-module-associated-protein-Cmr5	gnl\|CDD\|187880	cd09749, Cmr5_III-B, CRISPR/Cas system-associated protein Cmr5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; signature gene for subtype III-B.	9.16121e-38
NZ_CP022741.1\|WP_094500160.1\|1586799_1590177_-\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|187804	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas3/Cas2 fusion; This protein includes both DEAH and HD motifs for helicase and N-terminal domain corresponding to Cas2 RNAse; signature gene for Type I and subtype I-F.	0
NZ_CP022741.1\|WP_094131687.1\|1572256_1572358_+\|cytochrome-bd-I-oxidase-subunit-CydX	gnl\|CDD\|369733	pfam08173, YbgT_YccB, Membrane bound YbgT-like protein. This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in E. coli. Members have a consensus motif (MWYFXW) which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to Proteobacteria.	7.63151e-08
NZ_CP022741.1\|WP_094500157.1\|1582947_1583586_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|378224	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	4.45561e-61
NZ_CP022741.1\|WP_013856709.1\|1572472_1572835_-\|RidA-family-protein	gnl\|CDD\|100007	cd06150, YjgF_YER057c_UK114_like_2, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.	2.26714e-47
NZ_CP022741.1\|WP_094500152.1\|1574942_1576043_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl\|CDD\|224520	COG1604, COG1604, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.14572e-39

>NZ_CP022741.1|WP_094500156.1|1578509_1580348_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MEYLVAISIGPVQSFIEAGRRSQDLWCGSWLLSEVSRAVALSLHEEQSDCLIFPNPKNPDIDLQPQDPDSDSQIEVEANIANVVRAVIQVDDISQVRDIVENAKQAAEARLMQILDTIRHKKLESFTIDWARFEQQKDGILDIYAAWVKFEAGQYGKASERLGKLLAARKQTKDFKPIQDTKSGLFKSTLDGANNTLTEQVNNKEYQHQLRLSQGEELDILGLVKRSAGHFEQFTPFSRVVVEPWLSSLSSEQLNTLQSNYQSFVKAGLATTVKGNGDRYQAFPYDGEYLFTSRIEQEKDLEKGTKKALLDCLSTIGKESGSPMTYGVLLKADGDRMGELLAQAKTHDDSKAISKALHKFATSVRKTLQDHGGHAIYAGGDDVLAFVPLAQAMTCAKQLADDFKEKMKVIAAELKLSEALYPTLSVGLAIGHFVQPMRQLRARAIAAEKHAKGNKGNKGNKEHKPRNALAIHLGIRSGHEITWRCRWDDDETLNALTDFTHAFAQGWMPTRIMQEVREMAVHLKWTTGQKELAGIRESELERMLARADFNVSVEESGKTPEQIKESKKAALEKLKSQLRAQASGYSLDELANLLILARWLSAKTTADIGGEE
>NZ_CP022741.1|WP_094500155.1|1577367_1578507_-|CRISPR-associated-protein-Cmr3
MLYYLIEPKDPLIIRSGRPFEEISDAQAARFPPPSTVAGALRNIHARSNGKALNNELLKLAVTGPLAVKRPINGDAPSEEHILVPKPADVQYFYDQQTQLTHLVRSKPMAFAEGEGCDLPNGLLPLFAENAPDGKPVSGPNWWSFNDLAAWRKGEAVSFERICQNGWMPAEPDIRTHIAINNHSRNVESGKLFQTTGLSMWQQRADHQPFPDACVSILAGIDGDITLPLLNLGGERRLAEVEACTLWPSLPSDLAQSITKAKGFTLTFLTPVLFNQGWLPSWLNDDLVGTPPCCQSLTVKLRAAALERWIPQSGWDLVNNTPRAAQKMIPAGATYWFEIKGDATDEDIRSLCLAHFCDDPQSNLNGFGLALPAAYQFTI
>NZ_CP022741.1|WP_094500154.1|1576480_1577344_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MSFHVYHLFSQTILHCGSGQSVGIVDQPIARERASNLPIVPGSTVRGVLKAHISQKESDLSQSLFGYDKQDGKLSCTGALSITDAHLLLLPVRTVYGILAYATCPFILQRYKKDRKSDLTVPTPAKDQALYPKGNPNHQDDLMVLEDLDLKAQECEHTQQWAEYIAQTLDAKESAYYSDISKRIIVLPDTVFSFLAETATEIRTRIRINQKTGVVDKGALWTEESLPAESVLWGVYSVDAPRLNDQNGDKRLMFNDIINNKPLLQMGGNMGTGNGLVQFIAQSGKGE
>NZ_CP022741.1|WP_094500153.1|1576042_1576477_-|type-III-B-CRISPR-module-associated-protein-Cmr5
MQPRSQIVATAAFERINSRKDKSIEENKKYATLAHKLPTMVLQNGLAQATGFLLAKSEDHHKALLEDLTAVFKQVDAKLANIADDDKGEALHNEIIQSDLHQIMRYTREALEIAGWLRRYVQGVLKIDATGEVNDDHHNPAEAK
>NZ_CP022741.1|WP_094500152.1|1574942_1576043_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MTALVRNKIQSAFCQTDSANPSLLLQKGLLEANQKTGHLEEIVKLPASSEYKNTFNRWFDLSQDENRFSQTAMTLENRLLIGLTGNAALETGCSLSRNYGMPYIPGSSVKGIARAWANQHLAGHSDELEQLFGTADSEQPYRVSGLVTFHDAWWIPDPAKKEHKPFVLDVVTTHHQAYYNGTQAEPSDKDSPIPNHLLAVQGSFLFVLEGEPAAIELCQTLLEKALANNGIGAKTAAGYGYMKVDPALMQRLLDEYEKRLPQDVREHRQAEAQRRNEQQLEAAAKAELEMPPSLVISVINEKYQTQRDNQSFRDKVEAWIDRAIEAWNIDNRKSLASCLKEAGYIPGKKKKNYQISKDRLQQLKGE
>NZ_CP022741.1|WP_094500151.1|1574484_1574943_-|hypothetical-protein
MNTLKRIWLFLLVMFVVPLLIIIGIGFCTQQSEGFIYSILISIATSLIAAGVVYWFIDNRLNDLIKTNDEITVVLKSPNRKNIKCPPMSRKDFCRSEIMGYIGMVTGGPNFKMDRERFIIIGKQICETQKTKGNQEFIVDCTDAEMEQFGAE
>NZ_CP022741.1|WP_094500150.1|1573897_1574449_-|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MDSYIDIHLRPDAEMNEAELGSKVFTKFHKALVKLNTNQIAMSFPEANLKLGQLFRVHGSVSLLNDLQGLCWLGPLVGYCQISEVLSVPEQVQYRVISAKRRNLSSAKLRRLIARGSINKEGEQRYKEKMSNQSINAPYLDLQSGSTGQTYRKFFEFGEKQPLPVSGKFDSYGLSHTTTVPWF
>NZ_CP022741.1|WP_013856709.1|1572472_1572835_-|RidA-family-protein
MTIHRINPSKRWSDITVFNGIAHFVEVADSDTKADMKGQVEQILAQAEQQLTAIDSDRSRVLSVTIYVTDFAHFAALNEVWDSWFPEGCAPSRACVQAQLASPDYLVEMAFVAAAGPKFQ
>NZ_CP022741.1|WP_094131687.1|1572256_1572358_+|cytochrome-bd-I-oxidase-subunit-CydX
MWYFCWVLGVLLACALGIINGLWLEQAEHFDES
>NZ_CP022741.1|WP_094500149.1|1571107_1572244_+|cytochrome-d-ubiquinol-oxidase-subunit-II
MFDYETLRLLTWAIVGVLLIGFIITDGFDMGVAALLPILGRSDVERRVMINSIAPHWDGNQVWLITAGGAIFAIWPLVYATAFSSFYLAMMLLLAALWLRPIGMDYRSKIDNPSWRKACDNALFISGVVPPLIFGIGFGNLLVGVPFQLNNLLMLDYQGHFWDLFTPFPLLCGLLSLAIVVTQGATFLQLKTCDALRERAHNASVVSASIAVALFLIGGFFAANMTGYIIVSPIVTDAASNPLHKEVVSVARHLLHNYQAHAMLWLIPCVGIASLLACIWASLKRASGWAFLFSSLAIACIILTAGVALFPMIMPSSLMPSHSLTIWDATSSQKTLNIITLVAILVVPVILSYTAWGYYKMFGRLNDDYIRNHSVSLY
>NZ_CP022741.1|WP_094500157.1|1582947_1583586_-|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MNYYQEITLLPDVDISLGFIWQNVFQQVHIAFVEHKIDENQSAIAIGFPEYGKVGFPLGNKLRLFAKEQAILEKLAIEKWLARLEDYAHVKAIKPVPTEVTYASFMRKHVKSPERIERNMQQKATLWAAKSGKPLEECLLELEKTKPTTLCSLPFIYLHSQQTKQRSPEKNSKFPLFIEMQRQSASQVGQFDCYGLSAKANRQSALATVPHF
>NZ_CP022741.1|WP_094500158.1|1583595_1584627_-|type-I-F-CRISPR-associated-protein-Csy3
MAKNNDTASVLAFEKKLVPSDAYLFGTNWETKEQITPLSLQEKSVRGTISNRLKAAVQNDPVKLNAEVEKANLQRVDACALGQDQDTLKLHFTLKVLGGLAQPSACNNALFKQSYSAAVSQYITKYGCFELAKRYATNLANARFLWRNRVGAEDIEVQVKALNKGAEQAWTFNAKQFSTRHFDHNDSQINSLADRIAQALTSEADHLMLQIDCYAKVGKAQEVYPSEELVLDKGNSKSKKSKILYAVNDNAAMHSQKIGNALRSIDTWYPDYSLPEQTAGAIAIEPYGAVTNLGKAFRTPKDKQDFYTFFDKWARGSELSREEDEHYVVAVLVRGGVFGESDK
>NZ_CP022741.1|WP_094500159.1|1584638_1585532_-|type-I-F-CRISPR-associated-protein-Csy2
MRLLILPHIKIHNANALSSPFTIGFPAMTAWLGFVHALERKLNQTGLEELMFRSAAVVSHQFDLQTHKGEGDFVHSIIGTGNPLDKDGSRSAFIEEARCHLDVSLVIECDGNDDELDHENFVVRLQDTIATMKVASGDVLSLQLPFLTTVKIDDELETAKLLRQLMPGYVLLERRDLMIEAMKQGHDALDALLSHLTVDHHCEQLKDETVVWRSQRKTAGWIVPIATGFQGISPLGEAKNQRDPSVPHRFAESVVTLGEFVMAYKIKHLDDMLWHYHSDLENNLYLCQQNNLINEHQ
>NZ_CP022741.1|WP_010318159.1|1585528_1586800_-|type-I-F-CRISPR-associated-protein-Csy1
MEGTKVLDPAISTFFAERKEAWRKKNIKADMEEWEVREKERVCEQQFQLANWLPDAAKRAGQISLSSHPCTFSHPSARKNKNGYVSSIIAQNKSQADGFLRSGNINVELDALGNAAALDVHKFLTLVMFDNRRLLEHIEQESDFAQLLLNQPNCNYHELRDGFLKMIESDEEVVSSSKIKQVYFPIEDGEYHLLSLLTHSGHLFEQRKRIDNLRFGEELKQARECKKSNQYHPNGYREIFGLTTIGFGGTKPQNISVLNNQNAGKAHLLASAPPELKPRNLRLPKTDFFKDSLNPWQGKEVLEALHRLFNIDYNNINIREGRDYRIQEYVDLVIDKMWQVRILLAEYHGELSSELKVEQQIWLYPQFEQQRFEDDEWLDSIIRQISRSLINHYQKVITNPVSLADQELLAIERIVTNNKEALR
>NZ_CP022741.1|WP_094500160.1|1586799_1590177_-|type-I-F-CRISPR-associated-helicase-Cas3
MMVTFVSQCEKNALKKTRRVLDAFANRIGDNTWQTLITEEGLLTVKKMLGQTATRSTAVSCHWIRSRSRSQLLWVVGNKKKFNVEGVVPVNSTEKDLLNSEYESDWKYLPLIKAITGMAALLHDWGKASLLFQEKLNPEMKTKHKGDPLRHEWISCLLFHQFVNSVTSKNGDEQWLTMIVNDGIEESLLRPIELVKQEKLLAELPNAASLIIWLIVSHHRLPLPKDKELCNRQRERSNTSLTDFLSKITQAWGYENRFDDYSILLSKCFEFPQGLVSNSKHWTTQLQRRAKDLLHHLPLIEQAMADGSWRIILHHARLCLMLGDHFYSSQENDPQWQTQCELYANTDRTTKALKQRLDEHLVNVAKAAVNTVKLLPFFETEPLKATELSELAPKANTPKAFRWQDKAVRKINEWREHTEDKSQGYFVVNMASTGCGKTIANAKIMQALSEECESLRFILALGLRTLTLQTGDEYQERLKLKDSDLAVLIGSKAVFELHQSGKPVDKEDKDLEQEELGSESLESLQDETDELHWRGVLPEDELTTVLTKDKDRKLLYAPVLVCTIDHIMAATETKRGGRYILPCLRLMSSDLVIDEIDDFTGDDLIAIGRLVHLAAMLGRKVMISSATIPPDLALGLYNAYRQGWAIFAASRDQSASVNCVYVDEFSTQPDLVGSDDSDLEQYQALQQEFITKRIAKLKQQPAKRKAEIFICSKHAELSIEEQYFDHVKQAILAKHLHHFTLDHQTQTKVSFGVVRVANIQPCVKLTQYLLSCDWPEDTEVRGMAYHSQQVLLLRHEQEKHLDGVLKRKEKEGEEPIAFKDPVIRQHLEACKAKNLIFILVATPVEEVGRDHDFDWAVIEPSSFRSIIQMAGRVRRHRSGEVDKPNIALLQYNVKGFSGSEDRVFNHPGYETDKATQLNSHDLKQLVNEKRLLRSIDAIPRIQKRENLDAKNNLADLEHFATARTFGVEQINKPVESAPTRKERFNRESRSASSGSDWCDHLHGHIHGYWWLTALPQYFKRFRKSEPSMQLYLLKKDRGLEFCQRDDHGGLNAIELTLNIKHQPINLEQQQKLWLQRNYGDLISQYSQSKEHEFITSLKFGEISLINRGEQDEYTYNDQFGLVKVK
>NZ_CP022741.1|WP_094500161.1|1590173_1591163_-|type-I-F-CRISPR-associated-endonuclease-Cas1
MDDFSPSDLKTILHSKRANMYYLEYCRVMQKDGRVLYLTEADKENLYFNIPIANTTVLMLGNGTSITQAAMRMLSQAGVLVGFCGGGGTPLHMACEVEWFTPQSEYRPTEYLQGWLSFWFDDQKRLAAAKQFQNARIDYLQRVWRSDRELTLEKFNVQDEVIQQSLETFHQRTDAASKQSDLLLTEAQLTKALYKYAANNTGKDGFTRQHQPDKKSTDKANDFLNHGNYLAYGLAASCLWVLGIPHGFAVMHGKTRRGALVFDVADLIKDAIVLPWAFVCAKENATEQEFRQQILQAFIEHKALDFMFDTVKHVALQGKDEEGSEDHAL
>NZ_CP022741.1|WP_094500162.1|1591733_1592048_+|hypothetical-protein
MKIISTASSSISSITQKSISKIINLAEKIKSIRQHKTTSLNINLSKNAKNAKSHANLIKLVNNSNDYLSRNKGENVTLIKSLPTGSSHGKSLAPQIPEQLKTDK
>NZ_CP022741.1|WP_094500163.1|1592163_1592538_-|hypothetical-protein
MKKLREVVYKALVDNLGVQPHLLSRIEGDDPIGIELVGGEEIFIHLQDNLLQTFVEIPVFDQRVIRAKSQKIMELLFLDESVFMNLKKDKLIMISEFPVNTFNAEIELADKLRFFNNVIHQVKN
>NZ_CP022741.1|WP_094500164.1|1592547_1592781_-|type-III-secretion-protein
MTVLDVTAACLDIVKNAIIIFSLSFVITGVVVGLLQTVFSVQDPGLPMAAKLVVFIILLTQVGGSIYEQFHLLFHQL
>NZ_CP022741.1|WP_094500165.1|1592767_1593685_-|hypothetical-protein
MLNKLNQNSLNTLATEDNHFEDLLNEFTDDLKPVLAGESTVTKSKKKQKDILKRHRDEVAPEVTANTMSVQQRDISLKPQTPTDATQSIDRKTRMTGANAKQSAAQPLVTKETSSLVLKDTKQYGHSENPLLKEKPLMVLKDTKQYGHSENPLLKEKPLMVLNRVSIQSQGVKLPLESSAFMPLHAKSIYSSHNQKWPVAFSAIKDIQPPQISIDAPNHLNGTHTNIFGIEPKIKYVDSGNFTHSFLQTFPVMSSNNLNYSLSPAFFWQYPQVNSYRVFFARKYYLFTFENKKVTSFLEEYYDRT

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Crispr_ID: NZ_CP022741_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022741_3

1593240-1593339

TypeIII

Consensus_repeat	Method
CTATGTCCGTACTGCTTTGTATCCTTTAACACCA	CRISPRCasFinder

1 spacers

cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas10

The CRISPR arrays of NZ_CP022741_3

>merge|NZ_CP022741|3|1593240-1593339|CRISPRCasFinder
CTATGTCCGTACTGCTTTGTATCCTTTAACACCATCAACGGTTTTTCTTTAAGAAGCGGATTTTCGCTATGTCCGTACTGCTTTGTATCCTTTAATACCA

>NZ_CP022741|3|3|1593240-1593339|CRISPRCasFinder
CTATGTCCGTACTGCTTTGTATCCTTTAACACCA	TCAACGGTTTTTCTTTAAGAAGCGGATTTTCG
CTATGTCCGTACTGCTTTGTATCCTTTAATACCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022741.1\|WP_094500169.1\|1597004_1597688_-\|type-III-secretion-system-apparatus-protein-VscT2	unknown	unknown	unknown
NZ_CP022741.1\|WP_094500159.1\|1584638_1585532_-\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	pfam09614_cas5f_CAS-I-F	gnl\|CDD\|378221
NZ_CP022741.1\|WP_094500164.1\|1592547_1592781_-\|type-III-secretion-protein	unknown	unknown	unknown
NZ_CP022741.1\|WP_010318159.1\|1585528_1586800_-\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	pfam09611_cas8f_CAS-I-F	gnl\|CDD\|378220
NZ_CP022741.1\|WP_094500173.1\|1602564_1603113_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|226233
NZ_CP022741.1\|WP_094500160.1\|1586799_1590177_-\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|187804
NZ_CP022741.1\|WP_094500172.1\|1598929_1602355_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022741.1\|WP_010317947.1\|1593678_1594083_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235600
NZ_CP022741.1\|WP_094500162.1\|1591733_1592048_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022741.1\|WP_094500158.1\|1583595_1584627_-\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	cd09677_cas7f_CAS-I-F	gnl\|CDD\|378222
NZ_CP022741.1\|WP_094500157.1\|1582947_1583586_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	pfam09618_cas6f_CAS-I-F	gnl\|CDD\|378224
NZ_CP022741.1\|WP_094500156.1\|1578509_1580348_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	gnl\|CDD\|187810
NZ_CP022741.1\|WP_094500170.1\|1597689_1598385_-\|EscR/YscR/HrcR-family-type-III-secretion-system-export-apparatus-protein	unknown	unknown	gnl\|CDD\|237210
NZ_CP022741.1\|WP_094500167.1\|1595298_1596765_-\|secretin	unknown	unknown	gnl\|CDD\|274174
NZ_CP022741.1\|WP_094500161.1\|1590173_1591163_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NZ_CP022741.1\|WP_094500174.1\|1603246_1603462_-\|FliM/FliN-family-flagellar-motor-switch-protein	unknown	unknown	gnl\|CDD\|376445
NZ_CP022741.1\|WP_094500171.1\|1598471_1598750_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022741.1\|WP_094500163.1\|1592163_1592538_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022741.1\|WP_094500166.1\|1594036_1595299_-\|type-III-secretion-system-ATPase	unknown	unknown	gnl\|CDD\|238556
NZ_CP022741.1\|WP_094500168.1\|1596754_1597012_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP022741.1\|WP_094500173.1\|1602564_1603113_-\|transcriptional-regulator	gnl\|CDD\|226233	COG3710, CadC, DNA-binding winged-HTH domains [Transcription].	7.78439e-19
NZ_CP022741.1\|WP_094500159.1\|1584638_1585532_-\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	5.84831e-149
NZ_CP022741.1\|WP_010318159.1\|1585528_1586800_-\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|378220	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.	3.98584e-125
NZ_CP022741.1\|WP_094500174.1\|1603246_1603462_-\|FliM/FliN-family-flagellar-motor-switch-protein	gnl\|CDD\|376445	pfam01052, FliMN_C, Type III flagellar switch regulator (C-ring) FliN C-term. This family includes the C-terminal region of flagellar motor switch proteins FliN and FliM. It is associated with family FliM, pfam02154 and family FliN_N pfam16973.	2.30711e-08
NZ_CP022741.1\|WP_094500156.1\|1578509_1580348_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl\|CDD\|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	2.322e-54
NZ_CP022741.1\|WP_094500167.1\|1595298_1596765_-\|secretin	gnl\|CDD\|274174	TIGR02516, type_III_yscC, type III secretion outer membrane pore, YscC/HrcC family. A number of proteins homologous to the type IV pilus secretin PilQ (TIGR02515) are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). The clade described by this model contains the outer membrane pore proteins of bacterial type III secretion systems, typified by YscC for animal pathogens and HrcC for plant pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	7.51984e-39
NZ_CP022741.1\|WP_094500158.1\|1583595_1584627_-\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NZ_CP022741.1\|WP_010317947.1\|1593678_1594083_-\|hypothetical-protein	gnl\|CDD\|235600	PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.	3.3696e-05
NZ_CP022741.1\|WP_094500160.1\|1586799_1590177_-\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|187804	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas3/Cas2 fusion; This protein includes both DEAH and HD motifs for helicase and N-terminal domain corresponding to Cas2 RNAse; signature gene for Type I and subtype I-F.	0
NZ_CP022741.1\|WP_094500170.1\|1597689_1598385_-\|EscR/YscR/HrcR-family-type-III-secretion-system-export-apparatus-protein	gnl\|CDD\|237210	PRK12797, PRK12797, type III secretion system protein YscR; Provisional.	1.02442e-52
NZ_CP022741.1\|WP_094500161.1\|1590173_1591163_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	4.14046e-172
NZ_CP022741.1\|WP_094500157.1\|1582947_1583586_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|378224	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	4.45561e-61
NZ_CP022741.1\|WP_094500166.1\|1594036_1595299_-\|type-III-secretion-system-ATPase	gnl\|CDD\|238556	cd01136, ATPase_flagellum-secretory_path_III, Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.	1.67498e-162

>NZ_CP022741.1|WP_094500164.1|1592547_1592781_-|type-III-secretion-protein
MTVLDVTAACLDIVKNAIIIFSLSFVITGVVVGLLQTVFSVQDPGLPMAAKLVVFIILLTQVGGSIYEQFHLLFHQL
>NZ_CP022741.1|WP_094500163.1|1592163_1592538_-|hypothetical-protein
MKKLREVVYKALVDNLGVQPHLLSRIEGDDPIGIELVGGEEIFIHLQDNLLQTFVEIPVFDQRVIRAKSQKIMELLFLDESVFMNLKKDKLIMISEFPVNTFNAEIELADKLRFFNNVIHQVKN
>NZ_CP022741.1|WP_094500162.1|1591733_1592048_+|hypothetical-protein
MKIISTASSSISSITQKSISKIINLAEKIKSIRQHKTTSLNINLSKNAKNAKSHANLIKLVNNSNDYLSRNKGENVTLIKSLPTGSSHGKSLAPQIPEQLKTDK
>NZ_CP022741.1|WP_094500161.1|1590173_1591163_-|type-I-F-CRISPR-associated-endonuclease-Cas1
MDDFSPSDLKTILHSKRANMYYLEYCRVMQKDGRVLYLTEADKENLYFNIPIANTTVLMLGNGTSITQAAMRMLSQAGVLVGFCGGGGTPLHMACEVEWFTPQSEYRPTEYLQGWLSFWFDDQKRLAAAKQFQNARIDYLQRVWRSDRELTLEKFNVQDEVIQQSLETFHQRTDAASKQSDLLLTEAQLTKALYKYAANNTGKDGFTRQHQPDKKSTDKANDFLNHGNYLAYGLAASCLWVLGIPHGFAVMHGKTRRGALVFDVADLIKDAIVLPWAFVCAKENATEQEFRQQILQAFIEHKALDFMFDTVKHVALQGKDEEGSEDHAL
>NZ_CP022741.1|WP_094500160.1|1586799_1590177_-|type-I-F-CRISPR-associated-helicase-Cas3
MMVTFVSQCEKNALKKTRRVLDAFANRIGDNTWQTLITEEGLLTVKKMLGQTATRSTAVSCHWIRSRSRSQLLWVVGNKKKFNVEGVVPVNSTEKDLLNSEYESDWKYLPLIKAITGMAALLHDWGKASLLFQEKLNPEMKTKHKGDPLRHEWISCLLFHQFVNSVTSKNGDEQWLTMIVNDGIEESLLRPIELVKQEKLLAELPNAASLIIWLIVSHHRLPLPKDKELCNRQRERSNTSLTDFLSKITQAWGYENRFDDYSILLSKCFEFPQGLVSNSKHWTTQLQRRAKDLLHHLPLIEQAMADGSWRIILHHARLCLMLGDHFYSSQENDPQWQTQCELYANTDRTTKALKQRLDEHLVNVAKAAVNTVKLLPFFETEPLKATELSELAPKANTPKAFRWQDKAVRKINEWREHTEDKSQGYFVVNMASTGCGKTIANAKIMQALSEECESLRFILALGLRTLTLQTGDEYQERLKLKDSDLAVLIGSKAVFELHQSGKPVDKEDKDLEQEELGSESLESLQDETDELHWRGVLPEDELTTVLTKDKDRKLLYAPVLVCTIDHIMAATETKRGGRYILPCLRLMSSDLVIDEIDDFTGDDLIAIGRLVHLAAMLGRKVMISSATIPPDLALGLYNAYRQGWAIFAASRDQSASVNCVYVDEFSTQPDLVGSDDSDLEQYQALQQEFITKRIAKLKQQPAKRKAEIFICSKHAELSIEEQYFDHVKQAILAKHLHHFTLDHQTQTKVSFGVVRVANIQPCVKLTQYLLSCDWPEDTEVRGMAYHSQQVLLLRHEQEKHLDGVLKRKEKEGEEPIAFKDPVIRQHLEACKAKNLIFILVATPVEEVGRDHDFDWAVIEPSSFRSIIQMAGRVRRHRSGEVDKPNIALLQYNVKGFSGSEDRVFNHPGYETDKATQLNSHDLKQLVNEKRLLRSIDAIPRIQKRENLDAKNNLADLEHFATARTFGVEQINKPVESAPTRKERFNRESRSASSGSDWCDHLHGHIHGYWWLTALPQYFKRFRKSEPSMQLYLLKKDRGLEFCQRDDHGGLNAIELTLNIKHQPINLEQQQKLWLQRNYGDLISQYSQSKEHEFITSLKFGEISLINRGEQDEYTYNDQFGLVKVK
>NZ_CP022741.1|WP_010318159.1|1585528_1586800_-|type-I-F-CRISPR-associated-protein-Csy1
MEGTKVLDPAISTFFAERKEAWRKKNIKADMEEWEVREKERVCEQQFQLANWLPDAAKRAGQISLSSHPCTFSHPSARKNKNGYVSSIIAQNKSQADGFLRSGNINVELDALGNAAALDVHKFLTLVMFDNRRLLEHIEQESDFAQLLLNQPNCNYHELRDGFLKMIESDEEVVSSSKIKQVYFPIEDGEYHLLSLLTHSGHLFEQRKRIDNLRFGEELKQARECKKSNQYHPNGYREIFGLTTIGFGGTKPQNISVLNNQNAGKAHLLASAPPELKPRNLRLPKTDFFKDSLNPWQGKEVLEALHRLFNIDYNNINIREGRDYRIQEYVDLVIDKMWQVRILLAEYHGELSSELKVEQQIWLYPQFEQQRFEDDEWLDSIIRQISRSLINHYQKVITNPVSLADQELLAIERIVTNNKEALR
>NZ_CP022741.1|WP_094500159.1|1584638_1585532_-|type-I-F-CRISPR-associated-protein-Csy2
MRLLILPHIKIHNANALSSPFTIGFPAMTAWLGFVHALERKLNQTGLEELMFRSAAVVSHQFDLQTHKGEGDFVHSIIGTGNPLDKDGSRSAFIEEARCHLDVSLVIECDGNDDELDHENFVVRLQDTIATMKVASGDVLSLQLPFLTTVKIDDELETAKLLRQLMPGYVLLERRDLMIEAMKQGHDALDALLSHLTVDHHCEQLKDETVVWRSQRKTAGWIVPIATGFQGISPLGEAKNQRDPSVPHRFAESVVTLGEFVMAYKIKHLDDMLWHYHSDLENNLYLCQQNNLINEHQ
>NZ_CP022741.1|WP_094500158.1|1583595_1584627_-|type-I-F-CRISPR-associated-protein-Csy3
MAKNNDTASVLAFEKKLVPSDAYLFGTNWETKEQITPLSLQEKSVRGTISNRLKAAVQNDPVKLNAEVEKANLQRVDACALGQDQDTLKLHFTLKVLGGLAQPSACNNALFKQSYSAAVSQYITKYGCFELAKRYATNLANARFLWRNRVGAEDIEVQVKALNKGAEQAWTFNAKQFSTRHFDHNDSQINSLADRIAQALTSEADHLMLQIDCYAKVGKAQEVYPSEELVLDKGNSKSKKSKILYAVNDNAAMHSQKIGNALRSIDTWYPDYSLPEQTAGAIAIEPYGAVTNLGKAFRTPKDKQDFYTFFDKWARGSELSREEDEHYVVAVLVRGGVFGESDK
>NZ_CP022741.1|WP_094500157.1|1582947_1583586_-|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MNYYQEITLLPDVDISLGFIWQNVFQQVHIAFVEHKIDENQSAIAIGFPEYGKVGFPLGNKLRLFAKEQAILEKLAIEKWLARLEDYAHVKAIKPVPTEVTYASFMRKHVKSPERIERNMQQKATLWAAKSGKPLEECLLELEKTKPTTLCSLPFIYLHSQQTKQRSPEKNSKFPLFIEMQRQSASQVGQFDCYGLSAKANRQSALATVPHF
>NZ_CP022741.1|WP_094500156.1|1578509_1580348_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MEYLVAISIGPVQSFIEAGRRSQDLWCGSWLLSEVSRAVALSLHEEQSDCLIFPNPKNPDIDLQPQDPDSDSQIEVEANIANVVRAVIQVDDISQVRDIVENAKQAAEARLMQILDTIRHKKLESFTIDWARFEQQKDGILDIYAAWVKFEAGQYGKASERLGKLLAARKQTKDFKPIQDTKSGLFKSTLDGANNTLTEQVNNKEYQHQLRLSQGEELDILGLVKRSAGHFEQFTPFSRVVVEPWLSSLSSEQLNTLQSNYQSFVKAGLATTVKGNGDRYQAFPYDGEYLFTSRIEQEKDLEKGTKKALLDCLSTIGKESGSPMTYGVLLKADGDRMGELLAQAKTHDDSKAISKALHKFATSVRKTLQDHGGHAIYAGGDDVLAFVPLAQAMTCAKQLADDFKEKMKVIAAELKLSEALYPTLSVGLAIGHFVQPMRQLRARAIAAEKHAKGNKGNKGNKEHKPRNALAIHLGIRSGHEITWRCRWDDDETLNALTDFTHAFAQGWMPTRIMQEVREMAVHLKWTTGQKELAGIRESELERMLARADFNVSVEESGKTPEQIKESKKAALEKLKSQLRAQASGYSLDELANLLILARWLSAKTTADIGGEE
>NZ_CP022741.1|WP_010317947.1|1593678_1594083_-|hypothetical-protein
MKKHSKRWKEFGQIIEIIDIRINKQQRILVKLRKLSQELEEHIDEYWQRIEVLQQELKSLAVVKETNALSRLFMRRESIKTSIESVFFDASVTRQKAEDLASEIEQVEAEKRRLEKRKDALHEIREELRYEKEC
>NZ_CP022741.1|WP_094500166.1|1594036_1595299_-|type-III-secretion-system-ATPase
MLQHFFKVKELYQDTVVCHVSINTFVGQECFIHTVTGQKIRGEVMKVSQPRVEIKLLQPGAVQRGGRIEITPRRFCFPLNEQALVGKVINCYGESLYGDDYLTQPGEFIDLPIIVEPIPLQMRAPIETAFPTKLKIIDGLFTIGEGQRVGLFAPAGAGKTTTVSIMANNMEADVVIFAMIGERAREVIEFLEGEIGPEVIRKSITVVSTSEANPLEKVRSGLVAVSIARHFMAQGKKVVIYFDSLTRFARAQAMLDGTPIKGGIPIGVSLALSRLVESCGNSVHGSVTGIFTVLIEKEIDDDPIAHEVKSLIDGHLVYSTTIASTGRYPAIDVLKSKSRLQNKIQDKRYIRLSEKIKDMVYRYFNVELLIRVGEYEKGNDLETDKAIDLYPVIMEFLKQGFEGVEYEETLEAMERIWSDY
>NZ_CP022741.1|WP_094500167.1|1595298_1596765_-|secretin
MKIKWLPLVLFFCATMTQASLLIKQQDIDLKGALSAIAKDMQVKLVNDLDDKTQRYTLTQTLSGEGPELLKQLSEIYDFDWYVYGGMLTVEAGKTYINYSYKPRNITSQALLKELKQTFNTNLTTKLKLTERGNSILFSGTRKFVNDAVSYANMVDRNQFLEKGNNLELARIEFHFISVIDRSVSSFDSTVIFPGAQALIAAAITNMGQFQNVSDGEMAQRAYKVKLSEGEKQQLDEQEKTSKVQALPAANALLVRGTPEEIKLAKRIAALIDIKRQQLLFSLTVYDVAVDRNENFGIDSSWLNGTKGIYDIVVPPFTQTTDFLRNFQALSSNGVARSVYQTNLLVLENQKGHFGKKETATITLISERQVEVQKIEADNSLYVTGRLLPSGNVQAKVEYIEESLGGTDSESKKSEPPKVSSQSLETEVYIKPNQTVILGGFDNTATQSITSSVPVLSSIPLLGELFKNTSQKKHKVKRYVSVSFEVIE
>NZ_CP022741.1|WP_094500168.1|1596754_1597012_-|hypothetical-protein
MNRVEIINRSVVSQADNDMDDFASVAQEVLRSSKVQNEVTTHFKEEDTLSDEEIVDMILTQSIMDETARQMKQSQERLKEILNED
>NZ_CP022741.1|WP_094500169.1|1597004_1597688_-|type-III-secretion-system-apparatus-protein-VscT2
MEALLFPDWRLFTGLFLFLKIYNPTRLYLDNTTCLAISIVLAIGLSASDLAQVPTLWWVLSVVFFALISSVPYWLSGMVGSVIQQLLLLNEQSVQDRRFTDESEALAKISSLIFLMYALEAGTLFQPLFDVFTHAHSDYINHPFETLYFMIVDSLSMVMIVSGKYIILMMAITVGCGYIDLFFKKASISMFITMNIKAIVIVIILNLWLFSDQFYVFKQMMQKVGYE
>NZ_CP022741.1|WP_094500170.1|1597689_1598385_-|EscR/YscR/HrcR-family-type-III-secretion-system-export-apparatus-protein
MLQLLSPDNAYSGANLLLLLVLVLLSTVFFICFSGFVKYNIVLNIIKNAVGTQQIPPAIVVNLLAALMALNSIWPDVKPGIERIKPYFSEQSEKEQVFDLFYDPSMEEEKNPKNITMYYLASHMFEFFPELLERAKVKTNLLLSMIDIPINFDESTDTFKYFFGSLVLDLYQGFELGLKLYMVFVSIDFLIAVVLSGVGMTMLSPTVISTPVKLAVFYFSDSWTLLFRALA
>NZ_CP022741.1|WP_094500171.1|1598471_1598750_-|hypothetical-protein
MADTVVKPTIDGRLTTREVTDTFKSFISQADKAVEQFLTEHSKDEDGNVLNLSASDSLQLQKLMSDQSIAAQTATTTLKSVKDSIIASARNI
>NZ_CP022741.1|WP_094500172.1|1598929_1602355_-|hypothetical-protein
MQTLSVQPFSGISSEPHSATNRLIFNPICREDISAQNFVDLTCVEQHHGLKMMASIQNGQIILIAGKNRGFLREIWRHRPFHHRKADCFFAPIELPDKHFTHLWVDKHGNLQVVYNNINTGNTYPASLKLEPKLTGNTNQILVETHIKANPDQKMINGNPLVKLTLKDGVETQVSIDPLNSQRLSITGSKEQLPLPLSTGEYIQHIKPCGKWLQVVIAASIENIVEQRVRYLDMQHVDFDSISSKTARVIFSDTPPVTFAHFAVNNGNHFANANPFVGHKIKHIGNQLVPLSSWIDGIKHRVSRGNEKWQLGRKVDAVKSYAKAMDPGLQVMALWGKQRWDHRRLPLEIAMAEKRLVKQLATTRYLVREWDKQFLTNPQLSLDAIDSKLRVALSLYVDTSTDRESSPLQQVEQRLLDSLKMSEQVLAQIVIESASDTNQLDTPLAKRLSMLNSKLSCLLTHPNAKEHSFMFNNILNTMQNTLTRLINSKCTSFHYQDIELYISYIERTLINVRLYLACQSAPEVIHKQTLPLLTLSHKLLREKTDELQQAIQISSPSMKAWRKMRKVQFRMAESLHNHQNGLGKVWTTILGGHSQTHQIATQIAQRMQSLPKGDSLTLSAQQGVFGFAGIAHFGLPFLGGYFAGVVANYEKNYDCQLVAQGDGKTQVQFIHQGQKSATAMLGTGGGLEDLAKLLVYERGSLVTILPFEATLALIALKESKQSFAFDVNDDDLPGVLSYLFKTEDWDKALDYHLNNPQYTSGRTVTLKGCVSTNSELRMQLGIDATPNLSMVMPRFYAKAGAEISLERRHERALLIGGETKLHDQIDYIRRLNIAIDSGVTTMLFPLSSTHAFPVAIDEKGFIGAKLRTARHDQLVHIYRPAHQTNEATQQGSPNDNLVQLSHWIQENLTDKPQLQASVFKILPQLLKAIEVGYHEVSKEIAADKIEHLKINYDQSINWHSRWADNIRRYIHIRPKYSRSLSQLIDEKSYHMLLKDIKASSQSQSQLLNVGRESFIKATAKYRMDIKQLNHLMDNLIKQLKESENIKSTSKILDNFEQQLSRSSLAERNLFKLSEITFQRISSMQQHALGILPMVKVKQKSQIIMTENLGVMTIETLSNSEKLKLDTSSLDPSLISVPHNFP
>NZ_CP022741.1|WP_094500173.1|1602564_1603113_-|transcriptional-regulator
MERNYVLGQQVIFDSLKGEIFTDEKIVGLGSRDAAILKLLCEKSNHVILKEEIHEKVWGKVLVSDTSLTKAISNLRKSLAVFEEVSCEIKTIPKEGYMLIADEPFTDALWLDTPPAFEIKNVVSSERTLIDRPTLNSKMNHEFSSEAINENYSFLKENSGYLIVAMLVLIASFFTLFFMVFL
>NZ_CP022741.1|WP_094500174.1|1603246_1603462_-|FliM/FliN-family-flagellar-motor-switch-protein
MKIAIDVVIGHCTMTLNELQQLQKGQIKSFPDFTQSQVMLKSGNELIAIGTLVKVDDQYCVSIEKVNTLEH

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP022741_2	2.12\|1582672\|32\|NZ_CP022741\|PILER-CR,CRISPRCasFinder,CRT	1582672-1582703	32	CP015514	Vibrio vulnificus strain FORC_036 plasmid unnamed, complete sequence	429976-430007	0	1.0
NZ_CP022741_2	2.10\|1582552\|32\|NZ_CP022741\|PILER-CR,CRISPRCasFinder,CRT	1582552-1582583	32	AP013558	Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C24-MedDCM-OCT-S38-C43, * SEQUENCING IN PROGRESS *, 8 ordered pieces	20360-20391	5	0.844
NZ_CP022741_2	2.11\|1582612\|32\|NZ_CP022741\|PILER-CR,CRISPRCasFinder,CRT	1582612-1582643	32	AP013558	Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C24-MedDCM-OCT-S38-C43, * SEQUENCING IN PROGRESS *, 8 ordered pieces	20360-20391	5	0.844
NZ_CP022741_1	1.8\|1573407\|32\|NZ_CP022741\|PILER-CR,CRISPRCasFinder,CRT	1573407-1573438	32	AP014859	Vibrio parahaemolyticus plasmid pVP2HP DNA, complete sequence, strain: VPE61	94408-94439	6	0.812
NZ_CP022741_1	1.8\|1573407\|32\|NZ_CP022741\|PILER-CR,CRISPRCasFinder,CRT	1573407-1573438	32	AP014861	Vibrio parahaemolyticus plasmid pVPE61b DNA, complete sequence, strain: VPE61	40853-40884	6	0.812
NZ_CP022741_1	1.8\|1573407\|32\|NZ_CP022741\|PILER-CR,CRISPRCasFinder,CRT	1573407-1573438	32	NZ_CP046854	Vibrio fluvialis strain F8658 plasmid unnamed1, complete sequence	24210-24241	6	0.812
NZ_CP022741_1	1.10\|1573527\|32\|NZ_CP022741\|PILER-CR,CRISPRCasFinder,CRT	1573527-1573558	32	MH986725	Pseudoalteromonas phage DW, complete genome	23370-23401	6	0.812
NZ_CP022741_1	1.1\|1572987\|32\|NZ_CP022741\|PILER-CR,CRISPRCasFinder,CRT	1572987-1573018	32	NZ_CP024183	Moraxella osloensis strain KSH plasmid p3, complete sequence	41222-41253	7	0.781
NZ_CP022741_1	1.4\|1573167\|32\|NZ_CP022741\|PILER-CR,CRISPRCasFinder,CRT	1573167-1573198	32	MK496727	Capybara microvirus Cap1_SP_145, complete genome	897-928	7	0.781
NZ_CP022741_2	2.7\|1582372\|32\|NZ_CP022741\|PILER-CR,CRISPRCasFinder,CRT	1582372-1582403	32	MT889373	Arthrobacter phage Brynnie, complete genome	4877-4908	7	0.781
NZ_CP022741_2	2.7\|1582372\|32\|NZ_CP022741\|PILER-CR,CRISPRCasFinder,CRT	1582372-1582403	32	KU160644	Arthrobacter phage Galaxy, complete genome	4826-4857	7	0.781
NZ_CP022741_2	2.7\|1582372\|32\|NZ_CP022741\|PILER-CR,CRISPRCasFinder,CRT	1582372-1582403	32	MF140397	Arthrobacter phage Abidatro, complete genome	4817-4848	7	0.781
NZ_CP022741_3	3.1\|1593274\|32\|NZ_CP022741\|CRISPRCasFinder	1593274-1593305	32	NZ_CP039965	Pseudorhodobacter sp. S12M18 plasmid unnamed1, complete sequence	1262971-1263002	7	0.781
NZ_CP022741_1	1.1\|1572987\|32\|NZ_CP022741\|PILER-CR,CRISPRCasFinder,CRT	1572987-1573018	32	NZ_CP024447	Moraxella osloensis strain NP7 plasmid pNP7-4, complete sequence	29930-29961	8	0.75
NZ_CP022741_1	1.2\|1573047\|32\|NZ_CP022741\|PILER-CR,CRISPRCasFinder,CRT	1573047-1573078	32	NC_049431	Vibrio phage 1.097.O._10N.286.49.B3, partial genome	29428-29459	8	0.75
NZ_CP022741_1	1.3\|1573107\|32\|NZ_CP022741\|PILER-CR,CRISPRCasFinder,CRT	1573107-1573138	32	AP013434	Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-U-MedDCM-OCT-S32-C65	5687-5718	8	0.75
NZ_CP022741_1	1.9\|1573467\|32\|NZ_CP022741\|PILER-CR,CRISPRCasFinder,CRT	1573467-1573498	32	MN935200	UNVERIFIED: Staphylococcus phage VTCCBPA116 genomic sequence	83248-83279	8	0.75
NZ_CP022741_1	1.9\|1573467\|32\|NZ_CP022741\|PILER-CR,CRISPRCasFinder,CRT	1573467-1573498	32	AB853331	Staphylococcus phage S25-4 DNA, complete genome	105700-105731	8	0.75
NZ_CP022741_1	1.9\|1573467\|32\|NZ_CP022741\|PILER-CR,CRISPRCasFinder,CRT	1573467-1573498	32	NC_022920	Staphylococcus phage S25-3 DNA, complete genome	100833-100864	8	0.75
NZ_CP022741_2	2.1\|1582012\|32\|NZ_CP022741\|PILER-CR,CRISPRCasFinder,CRT	1582012-1582043	32	MN692965	Marine virus AFVG_117M92, complete genome	33508-33539	8	0.75
NZ_CP022741_2	2.5\|1582252\|32\|NZ_CP022741\|PILER-CR,CRISPRCasFinder,CRT	1582252-1582283	32	NC_019739	Microcoleus sp. PCC 7113 plasmid pMIC7113.01, complete sequence	27993-28024	8	0.75
NZ_CP022741_2	2.10\|1582552\|32\|NZ_CP022741\|PILER-CR,CRISPRCasFinder,CRT	1582552-1582583	32	AP014375	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S42-C56, * SEQUENCING IN PROGRESS *	22943-22974	8	0.75
NZ_CP022741_2	2.10\|1582552\|32\|NZ_CP022741\|PILER-CR,CRISPRCasFinder,CRT	1582552-1582583	32	MT647606	Pelagibacter phage Mosig EXVC030M, partial genome	34890-34921	8	0.75
NZ_CP022741_2	2.11\|1582612\|32\|NZ_CP022741\|PILER-CR,CRISPRCasFinder,CRT	1582612-1582643	32	AP014375	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S42-C56, * SEQUENCING IN PROGRESS *	22943-22974	8	0.75
NZ_CP022741_2	2.11\|1582612\|32\|NZ_CP022741\|PILER-CR,CRISPRCasFinder,CRT	1582612-1582643	32	MT647606	Pelagibacter phage Mosig EXVC030M, partial genome	34890-34921	8	0.75
NZ_CP022741_1	1.3\|1573107\|32\|NZ_CP022741\|PILER-CR,CRISPRCasFinder,CRT	1573107-1573138	32	NZ_CP009118	Borreliella valaisiana Tom4006 plasmid cp26, complete sequence	2749-2780	9	0.719
NZ_CP022741_1	1.3\|1573107\|32\|NZ_CP022741\|PILER-CR,CRISPRCasFinder,CRT	1573107-1573138	32	NZ_CP044539	Borrelia sp. CA690 plasmid cp26, complete sequence	19672-19703	9	0.719
NZ_CP022741_1	1.3\|1573107\|32\|NZ_CP022741\|PILER-CR,CRISPRCasFinder,CRT	1573107-1573138	32	NZ_CP009060	Borreliella afzelii K78 plasmid cp26, complete sequence	22182-22213	9	0.719
NZ_CP022741_1	1.3\|1573107\|32\|NZ_CP022741\|PILER-CR,CRISPRCasFinder,CRT	1573107-1573138	32	NZ_CP018750	Borreliella garinii strain CIP 103362 isolate 20047 plasmid cp26, complete sequence	26336-26367	9	0.719
NZ_CP022741_1	1.3\|1573107\|32\|NZ_CP022741\|PILER-CR,CRISPRCasFinder,CRT	1573107-1573138	32	NC_015907	Borreliella bissettii DN127 plasmid cp26, complete sequence	22078-22109	9	0.719
NZ_CP022741_1	1.3\|1573107\|32\|NZ_CP022741\|PILER-CR,CRISPRCasFinder,CRT	1573107-1573138	32	NZ_CP028867	Borreliella garinii strain 20047 plasmid cp26, complete sequence	26480-26511	9	0.719
NZ_CP022741_1	1.3\|1573107\|32\|NZ_CP022741\|PILER-CR,CRISPRCasFinder,CRT	1573107-1573138	32	NZ_CP015797	Borrelia mayonii strain MN14-1539 plasmid cp26, complete sequence	22449-22480	9	0.719
NZ_CP022741_1	1.3\|1573107\|32\|NZ_CP022741\|PILER-CR,CRISPRCasFinder,CRT	1573107-1573138	32	NZ_CP009213	Borreliella afzelii Tom3107 plasmid cp26, complete sequence	22173-22204	9	0.719
NZ_CP022741_1	1.3\|1573107\|32\|NZ_CP022741\|PILER-CR,CRISPRCasFinder,CRT	1573107-1573138	32	NZ_CP015781	Borrelia mayonii strain MN14-1420 plasmid cp26, complete sequence	22475-22506	9	0.719
NZ_CP022741_1	1.3\|1573107\|32\|NZ_CP022741\|PILER-CR,CRISPRCasFinder,CRT	1573107-1573138	32	NC_017725	Borreliella garinii BgVir plasmid cp26, complete sequence	22714-22745	9	0.719
NZ_CP022741_1	1.3\|1573107\|32\|NZ_CP022741\|PILER-CR,CRISPRCasFinder,CRT	1573107-1573138	32	NC_006128	Borreliella bavariensis PBi plasmid cp26, complete sequence	22740-22771	9	0.719
NZ_CP022741_1	1.3\|1573107\|32\|NZ_CP022741\|PILER-CR,CRISPRCasFinder,CRT	1573107-1573138	32	NC_017229	Borreliella afzelii PKo plasmid cp26, complete sequence	22150-22181	9	0.719
NZ_CP022741_1	1.13\|1573708\|32\|NZ_CP022741\|PILER-CR,CRISPRCasFinder,CRT	1573708-1573739	32	NZ_CP046100	Rhodococcus sp. AQ5-07 plasmid unnamed1, complete sequence	141106-141137	9	0.719
NZ_CP022741_2	2.7\|1582372\|32\|NZ_CP022741\|PILER-CR,CRISPRCasFinder,CRT	1582372-1582403	32	MN224564	Streptomyces phage Araceli, complete genome	36169-36200	9	0.719
NZ_CP022741_2	2.7\|1582372\|32\|NZ_CP022741\|PILER-CR,CRISPRCasFinder,CRT	1582372-1582403	32	MH229863	Streptomyces phage JackieB, complete genome	36025-36056	9	0.719
NZ_CP022741_2	2.7\|1582372\|32\|NZ_CP022741\|PILER-CR,CRISPRCasFinder,CRT	1582372-1582403	32	MH229862	Streptomyces phage Henoccus, complete genome	36186-36217	9	0.719
NZ_CP022741_2	2.7\|1582372\|32\|NZ_CP022741\|PILER-CR,CRISPRCasFinder,CRT	1582372-1582403	32	MH825706	Streptomyces phage Microdon, complete genome	36026-36057	9	0.719
NZ_CP022741_1	1.3\|1573107\|32\|NZ_CP022741\|PILER-CR,CRISPRCasFinder,CRT	1573107-1573138	32	HQ634195	Vibrio phage eugene 12A10 genomic sequence	84125-84156	10	0.688
NZ_CP022741_2	2.1\|1582012\|32\|NZ_CP022741\|PILER-CR,CRISPRCasFinder,CRT	1582012-1582043	32	NZ_CP049157	Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence	950676-950707	10	0.688
NZ_CP022741_2	2.1\|1582012\|32\|NZ_CP022741\|PILER-CR,CRISPRCasFinder,CRT	1582012-1582043	32	NZ_CP049158	Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence	1710617-1710648	10	0.688
NZ_CP022741_2	2.1\|1582012\|32\|NZ_CP022741\|PILER-CR,CRISPRCasFinder,CRT	1582012-1582043	32	NZ_CP049159	Caballeronia sp. SBC1 plasmid pSBC1_3, complete sequence	119912-119943	10	0.688
NZ_CP022741_2	2.1\|1582012\|32\|NZ_CP022741\|PILER-CR,CRISPRCasFinder,CRT	1582012-1582043	32	NZ_CP049317	Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence	693735-693766	10	0.688
NZ_CP022741_2	2.1\|1582012\|32\|NZ_CP022741\|PILER-CR,CRISPRCasFinder,CRT	1582012-1582043	32	NZ_CP049318	Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence	1715285-1715316	10	0.688
NZ_CP022741_2	2.1\|1582012\|32\|NZ_CP022741\|PILER-CR,CRISPRCasFinder,CRT	1582012-1582043	32	NZ_CP049319	Caballeronia sp. SBC2 plasmid pSBC2-3, complete sequence	320130-320161	10	0.688
NZ_CP022741_2	2.1\|1582012\|32\|NZ_CP022741\|PILER-CR,CRISPRCasFinder,CRT	1582012-1582043	32	NZ_CP049319	Caballeronia sp. SBC2 plasmid pSBC2-3, complete sequence	322519-322550	10	0.688
NZ_CP022741_2	2.1\|1582012\|32\|NZ_CP022741\|PILER-CR,CRISPRCasFinder,CRT	1582012-1582043	32	NZ_CP049322	Caballeronia sp. SBC2 plasmid pSBC2-6, complete sequence	3698-3729	10	0.688
NZ_CP022741_2	2.8\|1582432\|32\|NZ_CP022741\|PILER-CR,CRISPRCasFinder,CRT	1582432-1582463	32	MG962366	Rhodococcus phage Finch, complete genome	42963-42994	10	0.688
NZ_CP022741_2	2.9\|1582492\|32\|NZ_CP022741\|PILER-CR,CRISPRCasFinder,CRT	1582492-1582523	32	NZ_CP019641	Planococcus sp. Y42 plasmid unnamed1, complete sequence	199710-199741	10	0.688

1. spacer 2.12|1582672|32|NZ_CP022741|PILER-CR,CRISPRCasFinder,CRT matches to CP015514 (Vibrio vulnificus strain FORC_036 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

attttgtcattggaagcctgctctgacgagat	CRISPR spacer
attttgtcattggaagcctgctctgacgagat	Protospacer
********************************

2. spacer 2.10|1582552|32|NZ_CP022741|PILER-CR,CRISPRCasFinder,CRT matches to AP013558 (Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C24-MedDCM-OCT-S38-C43, *** SEQUENCING IN PROGRESS ***, 8 ordered pieces) position: , mismatch: 5, identity: 0.844

aaaatgagtggcaacaagagtttgagtgtgat	CRISPR spacer
agaagaagtaccaacaagagtttgagtgtgat	Protospacer
*.** .***. *********************

3. spacer 2.11|1582612|32|NZ_CP022741|PILER-CR,CRISPRCasFinder,CRT matches to AP013558 (Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C24-MedDCM-OCT-S38-C43, *** SEQUENCING IN PROGRESS ***, 8 ordered pieces) position: , mismatch: 5, identity: 0.844

aaaatgagtggcaacaagagtttgagtgtgat	CRISPR spacer
agaagaagtaccaacaagagtttgagtgtgat	Protospacer
*.** .***. *********************

4. spacer 1.8|1573407|32|NZ_CP022741|PILER-CR,CRISPRCasFinder,CRT matches to AP014859 (Vibrio parahaemolyticus plasmid pVP2HP DNA, complete sequence, strain: VPE61) position: , mismatch: 6, identity: 0.812

ccgacttgtcggattgtccacactttttaggc	CRISPR spacer
ccgacttgtcggattgtccacaaatttacgaa	Protospacer
**********************  ***  *.

5. spacer 1.8|1573407|32|NZ_CP022741|PILER-CR,CRISPRCasFinder,CRT matches to AP014861 (Vibrio parahaemolyticus plasmid pVPE61b DNA, complete sequence, strain: VPE61) position: , mismatch: 6, identity: 0.812

ccgacttgtcggattgtccacactttttaggc	CRISPR spacer
ccgacttgtcggattgtccacaaatttacgaa	Protospacer
**********************  ***  *.

6. spacer 1.8|1573407|32|NZ_CP022741|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046854 (Vibrio fluvialis strain F8658 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

ccgacttgtcggattgtccacactttttaggc	CRISPR spacer
ccggcttgccggattgtccacacttcctcgac	Protospacer
***.****.****************..* *.*

7. spacer 1.10|1573527|32|NZ_CP022741|PILER-CR,CRISPRCasFinder,CRT matches to MH986725 (Pseudoalteromonas phage DW, complete genome) position: , mismatch: 6, identity: 0.812

aacggagataagaaaatgaacgcactagaaat	CRISPR spacer
agggaaaacaaaaaaatgaacgcactagaaat	Protospacer
*. *.*.*.**.********************

8. spacer 1.1|1572987|32|NZ_CP022741|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024183 (Moraxella osloensis strain KSH plasmid p3, complete sequence) position: , mismatch: 7, identity: 0.781

aaaatgaattgttgaacatcctttacacacac	CRISPR spacer
aaaatgaattgttaaacacccttgccaacctc	Protospacer
*************.****.****  **  * *

9. spacer 1.4|1573167|32|NZ_CP022741|PILER-CR,CRISPRCasFinder,CRT matches to MK496727 (Capybara microvirus Cap1_SP_145, complete genome) position: , mismatch: 7, identity: 0.781

ttgattgaagcattacgtcaacatcaacttaa	CRISPR spacer
gtgtttgaagcatttcgtcaacatctccagaa	Protospacer
 ** ********** **********  *  **

10. spacer 2.7|1582372|32|NZ_CP022741|PILER-CR,CRISPRCasFinder,CRT matches to MT889373 (Arthrobacter phage Brynnie, complete genome) position: , mismatch: 7, identity: 0.781

aactcgc-ccacgttgccggagttcgcccactg	CRISPR spacer
-accggcaacaggttgccggagtccgcccactc	Protospacer
 **. **  ** ***********.********

11. spacer 2.7|1582372|32|NZ_CP022741|PILER-CR,CRISPRCasFinder,CRT matches to KU160644 (Arthrobacter phage Galaxy, complete genome) position: , mismatch: 7, identity: 0.781

aactcgc-ccacgttgccggagttcgcccactg	CRISPR spacer
-accggcaacaggttgccggagtccgcccactc	Protospacer
 **. **  ** ***********.********

12. spacer 2.7|1582372|32|NZ_CP022741|PILER-CR,CRISPRCasFinder,CRT matches to MF140397 (Arthrobacter phage Abidatro, complete genome) position: , mismatch: 7, identity: 0.781

aactcgc-ccacgttgccggagttcgcccactg	CRISPR spacer
-accggcaacaggttgccggagtccgcccactc	Protospacer
 **. **  ** ***********.********

13. spacer 3.1|1593274|32|NZ_CP022741|CRISPRCasFinder matches to NZ_CP039965 (Pseudorhodobacter sp. S12M18 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

tcaacggtttttctttaagaagcggattttcg	CRISPR spacer
tgaacggtttttcttcaagaaggggcgttgag	Protospacer
* *************.****** **  **  *

14. spacer 1.1|1572987|32|NZ_CP022741|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024447 (Moraxella osloensis strain NP7 plasmid pNP7-4, complete sequence) position: , mismatch: 8, identity: 0.75

aaaatgaattgttgaacatcctttacacacac	CRISPR spacer
aaaatgaattgttaaacacccttgccaacctt	Protospacer
*************.****.****  **  * .

15. spacer 1.2|1573047|32|NZ_CP022741|PILER-CR,CRISPRCasFinder,CRT matches to NC_049431 (Vibrio phage 1.097.O._10N.286.49.B3, partial genome) position: , mismatch: 8, identity: 0.75

tataaccaagtactttctgaagacttcattcg	CRISPR spacer
gttaaccaagaacttactgaagacttcagggc	Protospacer
  ******** **** ************

16. spacer 1.3|1573107|32|NZ_CP022741|PILER-CR,CRISPRCasFinder,CRT matches to AP013434 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-U-MedDCM-OCT-S32-C65) position: , mismatch: 8, identity: 0.75

atgagttttgaaaataaaagttttgtgccaca	CRISPR spacer
atgagttttaaaaataaatgtttcttgttatt	Protospacer
*********.******** ****. **..*.

17. spacer 1.9|1573467|32|NZ_CP022741|PILER-CR,CRISPRCasFinder,CRT matches to MN935200 (UNVERIFIED: Staphylococcus phage VTCCBPA116 genomic sequence) position: , mismatch: 8, identity: 0.75

tttaacgc-atcttttaaccggagaagagaaat	CRISPR spacer
-tgattacaatcttttaacaggacaagagaaag	Protospacer
 * * ..* ********** *** ********

18. spacer 1.9|1573467|32|NZ_CP022741|PILER-CR,CRISPRCasFinder,CRT matches to AB853331 (Staphylococcus phage S25-4 DNA, complete genome) position: , mismatch: 8, identity: 0.75

----tttaacgcatcttttaaccggagaagagaaat	CRISPR spacer
tgattata----atcttttaacagaagaagagaaaa	Protospacer
    * **    ********** *.**********

19. spacer 1.9|1573467|32|NZ_CP022741|PILER-CR,CRISPRCasFinder,CRT matches to NC_022920 (Staphylococcus phage S25-3 DNA, complete genome) position: , mismatch: 8, identity: 0.75

----tttaacgcatcttttaaccggagaagagaaat	CRISPR spacer
tgattata----atcttttaacagaagaagagaaaa	Protospacer
    * **    ********** *.**********

20. spacer 2.1|1582012|32|NZ_CP022741|PILER-CR,CRISPRCasFinder,CRT matches to MN692965 (Marine virus AFVG_117M92, complete genome) position: , mismatch: 8, identity: 0.75

tatgagggtttagtttctgctgctgagtttct	CRISPR spacer
aagctgtgtttagtttctgcttctgagtttgg	Protospacer
 *   * ************** ********

21. spacer 2.5|1582252|32|NZ_CP022741|PILER-CR,CRISPRCasFinder,CRT matches to NC_019739 (Microcoleus sp. PCC 7113 plasmid pMIC7113.01, complete sequence) position: , mismatch: 8, identity: 0.75

tcaattgcttgaagcgcggtttccgccgtggc	CRISPR spacer
tcgctttcttgaagcgcggtttccacctctcc	Protospacer
**. ** *****************.** .  *

22. spacer 2.10|1582552|32|NZ_CP022741|PILER-CR,CRISPRCasFinder,CRT matches to AP014375 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S42-C56, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.75

aaaatgagtggcaacaagagtttgagtgtgat	CRISPR spacer
ctgagcagtttcaacaagagtttgagtgtgag	Protospacer
  .*  ***  ********************

23. spacer 2.10|1582552|32|NZ_CP022741|PILER-CR,CRISPRCasFinder,CRT matches to MT647606 (Pelagibacter phage Mosig EXVC030M, partial genome) position: , mismatch: 8, identity: 0.75

aaaatgagtggcaacaagagtttgagtgtgat	CRISPR spacer
ctgagcagtttcaacaagagtttgagtgtgaa	Protospacer
  .*  ***  ********************

24. spacer 2.11|1582612|32|NZ_CP022741|PILER-CR,CRISPRCasFinder,CRT matches to AP014375 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S42-C56, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.75

aaaatgagtggcaacaagagtttgagtgtgat	CRISPR spacer
ctgagcagtttcaacaagagtttgagtgtgag	Protospacer
  .*  ***  ********************

25. spacer 2.11|1582612|32|NZ_CP022741|PILER-CR,CRISPRCasFinder,CRT matches to MT647606 (Pelagibacter phage Mosig EXVC030M, partial genome) position: , mismatch: 8, identity: 0.75

aaaatgagtggcaacaagagtttgagtgtgat	CRISPR spacer
ctgagcagtttcaacaagagtttgagtgtgaa	Protospacer
  .*  ***  ********************

26. spacer 1.3|1573107|32|NZ_CP022741|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009118 (Borreliella valaisiana Tom4006 plasmid cp26, complete sequence) position: , mismatch: 9, identity: 0.719

atgagttttgaaaataaaagttttgtgccaca	CRISPR spacer
atgagtcttgaaaataaaagatttacaatagc	Protospacer
******.************* ***... .*

27. spacer 1.3|1573107|32|NZ_CP022741|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044539 (Borrelia sp. CA690 plasmid cp26, complete sequence) position: , mismatch: 9, identity: 0.719

atgagttttgaaaataaaagttttgtgccaca	CRISPR spacer
atgagtcttgaaaataaaagatttacaatagc	Protospacer
******.************* ***... .*

28. spacer 1.3|1573107|32|NZ_CP022741|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009060 (Borreliella afzelii K78 plasmid cp26, complete sequence) position: , mismatch: 9, identity: 0.719

atgagttttgaaaataaaagttttgtgccaca	CRISPR spacer
atgagtcttgaaaataaaagatttacaatagc	Protospacer
******.************* ***... .*

29. spacer 1.3|1573107|32|NZ_CP022741|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018750 (Borreliella garinii strain CIP 103362 isolate 20047 plasmid cp26, complete sequence) position: , mismatch: 9, identity: 0.719

atgagttttgaaaataaaagttttgtgccaca	CRISPR spacer
atgagtcttgaaaataaaagatttacaatagc	Protospacer
******.************* ***... .*

30. spacer 1.3|1573107|32|NZ_CP022741|PILER-CR,CRISPRCasFinder,CRT matches to NC_015907 (Borreliella bissettii DN127 plasmid cp26, complete sequence) position: , mismatch: 9, identity: 0.719

atgagttttgaaaataaaagttttgtgccaca	CRISPR spacer
atgagtcttgaaaataaaagatttacaatagc	Protospacer
******.************* ***... .*

31. spacer 1.3|1573107|32|NZ_CP022741|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028867 (Borreliella garinii strain 20047 plasmid cp26, complete sequence) position: , mismatch: 9, identity: 0.719

atgagttttgaaaataaaagttttgtgccaca	CRISPR spacer
atgagtcttgaaaataaaagatttacaatagc	Protospacer
******.************* ***... .*

32. spacer 1.3|1573107|32|NZ_CP022741|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015797 (Borrelia mayonii strain MN14-1539 plasmid cp26, complete sequence) position: , mismatch: 9, identity: 0.719

atgagttttgaaaataaaagttttgtgccaca	CRISPR spacer
atgagtcttgaaaataaaagatttacaatagc	Protospacer
******.************* ***... .*

33. spacer 1.3|1573107|32|NZ_CP022741|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009213 (Borreliella afzelii Tom3107 plasmid cp26, complete sequence) position: , mismatch: 9, identity: 0.719

atgagttttgaaaataaaagttttgtgccaca	CRISPR spacer
atgagtcttgaaaataaaagatttacaatagc	Protospacer
******.************* ***... .*

34. spacer 1.3|1573107|32|NZ_CP022741|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015781 (Borrelia mayonii strain MN14-1420 plasmid cp26, complete sequence) position: , mismatch: 9, identity: 0.719

atgagttttgaaaataaaagttttgtgccaca	CRISPR spacer
atgagtcttgaaaataaaagatttacaatagc	Protospacer
******.************* ***... .*

35. spacer 1.3|1573107|32|NZ_CP022741|PILER-CR,CRISPRCasFinder,CRT matches to NC_017725 (Borreliella garinii BgVir plasmid cp26, complete sequence) position: , mismatch: 9, identity: 0.719

atgagttttgaaaataaaagttttgtgccaca	CRISPR spacer
atgagtcttgaaaataaaagatttacaatagc	Protospacer
******.************* ***... .*

36. spacer 1.3|1573107|32|NZ_CP022741|PILER-CR,CRISPRCasFinder,CRT matches to NC_006128 (Borreliella bavariensis PBi plasmid cp26, complete sequence) position: , mismatch: 9, identity: 0.719

atgagttttgaaaataaaagttttgtgccaca	CRISPR spacer
atgagtcttgaaaataaaagatttacaatagc	Protospacer
******.************* ***... .*

37. spacer 1.3|1573107|32|NZ_CP022741|PILER-CR,CRISPRCasFinder,CRT matches to NC_017229 (Borreliella afzelii PKo plasmid cp26, complete sequence) position: , mismatch: 9, identity: 0.719

atgagttttgaaaataaaagttttgtgccaca	CRISPR spacer
atgagtcttgaaaataaaagatttacaatagc	Protospacer
******.************* ***... .*

38. spacer 1.13|1573708|32|NZ_CP022741|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046100 (Rhodococcus sp. AQ5-07 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

tactcgaaaatgagcgacccgctttactttga	CRISPR spacer
cggtcgaaaatgagcgatccgctttcctggat	Protospacer
.. **************.******* **  .

39. spacer 2.7|1582372|32|NZ_CP022741|PILER-CR,CRISPRCasFinder,CRT matches to MN224564 (Streptomyces phage Araceli, complete genome) position: , mismatch: 9, identity: 0.719

aactcgcccacgttgccggagttcgcccactg	CRISPR spacer
tgcagctccacgtagccggagtacgcccactc	Protospacer
 .*   .****** ******** ********

40. spacer 2.7|1582372|32|NZ_CP022741|PILER-CR,CRISPRCasFinder,CRT matches to MH229863 (Streptomyces phage JackieB, complete genome) position: , mismatch: 9, identity: 0.719

aactcgcccacgttgccggagttcgcccactg	CRISPR spacer
tgcagctccacgtagccggagtacgcccactc	Protospacer
 .*   .****** ******** ********

41. spacer 2.7|1582372|32|NZ_CP022741|PILER-CR,CRISPRCasFinder,CRT matches to MH229862 (Streptomyces phage Henoccus, complete genome) position: , mismatch: 9, identity: 0.719

aactcgcccacgttgccggagttcgcccactg	CRISPR spacer
tgcagctccacgtagccggagtacgcccactc	Protospacer
 .*   .****** ******** ********

42. spacer 2.7|1582372|32|NZ_CP022741|PILER-CR,CRISPRCasFinder,CRT matches to MH825706 (Streptomyces phage Microdon, complete genome) position: , mismatch: 9, identity: 0.719

aactcgcccacgttgccggagttcgcccactg	CRISPR spacer
tgcatctccacgtagccggagtacgcccactc	Protospacer
 .* . .****** ******** ********

43. spacer 1.3|1573107|32|NZ_CP022741|PILER-CR,CRISPRCasFinder,CRT matches to HQ634195 (Vibrio phage eugene 12A10 genomic sequence) position: , mismatch: 10, identity: 0.688

atgagttttgaaaataaaagttttgtgccaca	CRISPR spacer
ttgagttttaaagataaaagttttcatgttta	Protospacer
 ********.**.***********    . .*

44. spacer 2.1|1582012|32|NZ_CP022741|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 10, identity: 0.688

tatgagggtttagtttctgctgctgagtttct	CRISPR spacer
gctgagggtccagtttctgctgctgccgacgt	Protospacer
  *******..**************    . *

45. spacer 2.1|1582012|32|NZ_CP022741|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049158 (Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence) position: , mismatch: 10, identity: 0.688

tatgagggtttagtttctgctgctgagtttct	CRISPR spacer
gctgagggtccagtttctgctgctgccgacgt	Protospacer
  *******..**************    . *

46. spacer 2.1|1582012|32|NZ_CP022741|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049159 (Caballeronia sp. SBC1 plasmid pSBC1_3, complete sequence) position: , mismatch: 10, identity: 0.688

tatgagggtttagtttctgctgctgagtttct	CRISPR spacer
gctgagggtcgagtttctgctgctgccgacgt	Protospacer
  *******. **************    . *

47. spacer 2.1|1582012|32|NZ_CP022741|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 10, identity: 0.688

tatgagggtttagtttctgctgctgagtttct	CRISPR spacer
gctgagggtccagtttctgctgctgccgacgt	Protospacer
  *******..**************    . *

48. spacer 2.1|1582012|32|NZ_CP022741|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049318 (Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence) position: , mismatch: 10, identity: 0.688

tatgagggtttagtttctgctgctgagtttct	CRISPR spacer
gctgagggtccagtttctgctgctgccgacgt	Protospacer
  *******..**************    . *

49. spacer 2.1|1582012|32|NZ_CP022741|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049319 (Caballeronia sp. SBC2 plasmid pSBC2-3, complete sequence) position: , mismatch: 10, identity: 0.688

tatgagggtttagtttctgctgctgagtttct	CRISPR spacer
gctgagggtccagtttctgctgctgccgacgt	Protospacer
  *******..**************    . *

50. spacer 2.1|1582012|32|NZ_CP022741|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049319 (Caballeronia sp. SBC2 plasmid pSBC2-3, complete sequence) position: , mismatch: 10, identity: 0.688

tatgagggtttagtttctgctgctgagtttct	CRISPR spacer
gctgagggtcgagtttctgctgctgccgacgt	Protospacer
  *******. **************    . *

51. spacer 2.1|1582012|32|NZ_CP022741|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049322 (Caballeronia sp. SBC2 plasmid pSBC2-6, complete sequence) position: , mismatch: 10, identity: 0.688

tatgagggtttagtttctgctgctgagtttct	CRISPR spacer
gctgagggtccagtttctgctgctgccgacgt	Protospacer
  *******..**************    . *

52. spacer 2.8|1582432|32|NZ_CP022741|PILER-CR,CRISPRCasFinder,CRT matches to MG962366 (Rhodococcus phage Finch, complete genome) position: , mismatch: 10, identity: 0.688

tcattcaccgcccgtttaaccaccgtttaaaa	CRISPR spacer
tcattcacagcccgttcaaccacaacatcggc	Protospacer
******** *******.****** .. * ..

53. spacer 2.9|1582492|32|NZ_CP022741|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019641 (Planococcus sp. Y42 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

tagagaaagtgccagcagggtcagtttctagc	CRISPR spacer
cgagaaaagtgccagtatggtcagtttccgga	Protospacer
.....**********.* **********..*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

435987 : 443303

uncultured_Mediterranean_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010320454.1\|435987_436734_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.0e-68	54.5
WP_094499638.1\|436733_437360_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.0e-37	53.9
WP_167372419.1\|437365_438298_+	murein hydrolase activator NlpD	I3PV79	Clostridium_phage	5.9e-13	32.8
WP_017047531.1\|438370_439372_+	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	3.5e-35	34.8
WP_094499640.1\|439582_442171_-	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	1.4e-35	21.2
WP_047688250.1\|442412_443303_-	cysteine synthase CysM	A0A1X9I5F1	Streptococcus_phage	8.9e-59	41.4

DBSCAN-SWA_2

688246 : 695317

Faustovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_094499738.1\|688246_689461_+	IscS subfamily cysteine desulfurase	A0A1X7C038	Faustovirus	1.8e-30	31.4
WP_010320409.1\|689517_689901_+	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	1.8e-53	78.2
WP_010320408.1\|689963_690287_+	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	3.6e-26	53.3
WP_094499739.1\|690353_690869_+	co-chaperone HscB	NA	NA	NA	NA
WP_094499740.1\|690890_692744_+	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	7.2e-111	41.4
WP_010320405.1\|692755_693094_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_010320404.1\|693144_693339_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_094499741.1\|693523_694819_+	aminopeptidase PepB	Q6GYZ8	Mycoplasma_phage	5.0e-34	34.5
WP_010320402.1\|694891_695317_+	nucleoside-diphosphate kinase	K7YW26	Megavirus	6.6e-20	41.4

DBSCAN-SWA_3

2678631 : 2689895

Enterobacteria_phage(30.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_017043777.1\|2678631_2679381_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	9.9e-11	26.0
WP_017043778.1\|2679377_2680160_-	ABC transporter permease	NA	NA	NA	NA
WP_017043779.1\|2680209_2681292_-	DegT/DnrJ/EryC1/StrS family aminotransferase	H8ZJ36	Ostreococcus_tauri_virus	2.4e-21	26.2
WP_094500673.1\|2681300_2682422_-	GDP-mannose 4,6-dehydratase	M1HAR7	Acanthocystis_turfacea_Chlorella_virus	3.1e-133	66.4
WP_094500674.1\|2682424_2683813_-	phosphomannomutase CpsG	A0A127AWJ1	Bacillus_phage	3.7e-35	28.2
WP_094500675.1\|2683815_2685213_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	5.2e-53	31.2
WP_094500676.1\|2685293_2685845_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	6.1e-50	60.8
WP_094500677.1\|2685846_2686734_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	2.1e-36	35.3
WP_094500678.1\|2686730_2687609_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.1e-108	66.9
WP_094500679.1\|2687632_2688697_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.4e-103	54.9
WP_094500680.1\|2688953_2689895_+	ADP-glyceromanno-heptose 6-epimerase	E3SL51	Synechococcus_phage	6.6e-36	38.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP022742

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

567310 : 627695

Staphylococcus_prophage(41.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_094499631.1\|567310_568843_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	9.6e-69	34.2
WP_017042516.1\|569089_569281_-	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_026027241.1\|569196_569514_-	HigA family addiction module antidote protein	A0A222YWD7	Escherichia_phage	4.0e-14	46.2
WP_001162670.1\|569524_569812_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A222YWE2	Escherichia_phage	2.1e-25	57.6
WP_094501471.1\|570129_571098_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	8.0e-45	38.1
WP_094501473.1\|571123_572107_-	hypothetical protein	NA	NA	NA	NA
WP_094501475.1\|572103_572643_-	hypothetical protein	NA	NA	NA	NA
WP_080115560.1\|573249_573360_-	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_004397191.1\|573356_573680_-	hypothetical protein	NA	NA	NA	NA
WP_094501477.1\|576811_577345_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_094501479.1\|577341_577611_-	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_094501481.1\|580494_580779_-	hypothetical protein	NA	NA	NA	NA
WP_020977912.1\|580821_580941_-	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_080536237.1\|580965_581256_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_094501482.1\|581980_582466_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_094501484.1\|582698_583667_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	4.4e-43	37.8
WP_094501486.1\|583897_584362_+	hypothetical protein	NA	NA	NA	NA
WP_094501488.1\|584441_584720_-	hypothetical protein	NA	NA	NA	NA
WP_094501490.1\|584756_584870_-	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_094501492.1\|584863_585430_-	hypothetical protein	NA	NA	NA	NA
WP_094502119.1\|585458_585584_-	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_094501484.1\|585665_586634_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	4.4e-43	37.8
WP_094501494.1\|586681_587626_-	sce7725 family protein	NA	NA	NA	NA
WP_094501496.1\|587645_588494_-	sce7726 family protein	NA	NA	NA	NA
WP_094501498.1\|590191_590311_-	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_094502121.1\|592741_592852_-	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_094501500.1\|592855_593608_-	SDR family oxidoreductase	F2NZ40	Diadromus_pulchellus_ascovirus	2.1e-21	32.0
WP_094501502.1\|593762_594272_-	AAA family ATPase	A0A097BYE2	Leuconostoc_phage	1.8e-08	32.0
WP_094501504.1\|594417_594834_-	hypothetical protein	NA	NA	NA	NA
WP_039444489.1\|596056_596326_-	hypothetical protein	NA	NA	NA	NA
WP_094501508.1\|597561_598413_-	nucleotide-binding protein	NA	NA	NA	NA
WP_094501512.1\|600027_600351_-	hypothetical protein	NA	NA	NA	NA
WP_094501514.1\|601067_601844_-	hypothetical protein	K4NXB8	Burkholderia_phage	7.9e-11	27.5
WP_094501516.1\|601985_602744_-	hypothetical protein	NA	NA	NA	NA
WP_157729219.1\|602880_603711_-	hypothetical protein	NA	NA	NA	NA
WP_094501520.1\|604290_604416_-	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_157729220.1\|605171_605624_-	hypothetical protein	NA	NA	NA	NA
WP_094501526.1\|605807_606092_-	hypothetical protein	NA	NA	NA	NA
WP_094501528.1\|607321_607819_-	hypothetical protein	NA	NA	NA	NA
WP_094502130.1\|607859_607997_-	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_094502132.1\|607997_608327_-	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA
WP_064626998.1\|611934_612528_-	cell filamentation protein Fic	NA	NA	NA	NA
WP_094501484.1\|613432_614401_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	4.4e-43	37.8
WP_094501532.1\|614431_614815_-	hypothetical protein	NA	NA	NA	NA
WP_094502134.1\|615381_615504_-	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_094501534.1\|615496_615961_-	ASCH domain-containing protein	NA	NA	NA	NA
WP_094502136.1\|616517_616643_-	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_094501536.1\|616639_617128_-	hypothetical protein	NA	NA	NA	NA
WP_094501538.1\|617717_617843_-	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_094501540.1\|617832_618276_-	hypothetical protein	NA	NA	NA	NA
WP_094501542.1\|618265_618673_-	hypothetical protein	NA	NA	NA	NA
WP_094501545.1\|621322_622075_-	DUF2971 domain-containing protein	NA	NA	NA	NA
WP_094501549.1\|623203_623617_-	hypothetical protein	NA	NA	NA	NA
WP_094501551.1\|623649_623790_-	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_017042813.1\|623774_624122_-	DUF3024 domain-containing protein	G9L675	Escherichia_phage	6.8e-23	46.6
WP_094501553.1\|624342_624954_-	hypothetical protein	NA	NA	NA	NA
WP_094502138.1\|626519_626696_-	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_094501484.1\|626726_627695_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	4.4e-43	37.8

DBSCAN-SWA_2

821974 : 831790

Diadromus_pulchellus_ascovirus(16.67%)

integrase,tRNA

attL 810528:810541|attR 835691:835704

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
810528:810541	attL	NA	NA	NA	NA
WP_094501500.1\|821974_822727_-	SDR family oxidoreductase	F2NZ40	Diadromus_pulchellus_ascovirus	2.1e-21	32.0
WP_094501745.1\|822988_823951_+\|integrase	integron integrase	A0A1P8DJJ6	Virus_Rctr41k	1.3e-55	41.1
WP_010319590.1\|824015_824369_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_010319591.1\|824410_824605_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_080569453.1\|824708_825260_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	1.2e-13	39.0
WP_010319593.1\|825263_827192_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	3.8e-123	36.6
WP_094501747.1\|827405_829418_-	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	2.4e-51	34.5
WP_094501749.1\|829780_831790_+	exoribonuclease II	Q0GXV6	Lactococcus_phage	2.4e-27	23.6
835691:835704	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP022741

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP022742

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection