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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP022891 Bacillus subtilis strain DKU_NT_03 chromosome, complete genome 3 crisprs csa3,DinG,cas3,DEDDh 2 1 17 1

Results visualization

1. NZ_CP022891
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022891_1 1122810-1122917 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022891_2 3100744-3100917 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP022891_3 3240420-3240525 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP022891_2 2.1|3100774|18|NZ_CP022891|CRT 3100774-3100791 18 NZ_CP022891.1 3100726-3100743 0 1.0
NZ_CP022891_2 2.3|3100870|18|NZ_CP022891|CRT 3100870-3100887 18 NZ_CP022891.1 3100726-3100743 1 0.944

1. spacer 2.1|3100774|18|NZ_CP022891|CRT matches to position: 3100726-3100743, mismatch: 0, identity: 1.0

ccaataccagggccggag	CRISPR spacer
ccaataccagggccggag	Protospacer
******************

2. spacer 2.3|3100870|18|NZ_CP022891|CRT matches to position: 3100726-3100743, mismatch: 1, identity: 0.944

ccaatgccagggccggag	CRISPR spacer
ccaataccagggccggag	Protospacer
*****.************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP022891_1 1.1|1122834|60|NZ_CP022891|CRISPRCasFinder 1122834-1122893 60 NZ_CP024037 Bacillus aryabhattai strain K13 plasmid unnamed2 10417-10476 7 0.883
NZ_CP022891_1 1.1|1122834|60|NZ_CP022891|CRISPRCasFinder 1122834-1122893 60 NZ_CP026740 Bacillus megaterium strain YC4-R4 plasmid unnamed4 70764-70823 7 0.883
NZ_CP022891_1 1.1|1122834|60|NZ_CP022891|CRISPRCasFinder 1122834-1122893 60 NC_017139 Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence 1318-1377 7 0.883
NZ_CP022891_1 1.1|1122834|60|NZ_CP022891|CRISPRCasFinder 1122834-1122893 60 NZ_CP010587 Bacillus megaterium Q3 plasmid p1, complete sequence 838-897 7 0.883
NZ_CP022891_1 1.1|1122834|60|NZ_CP022891|CRISPRCasFinder 1122834-1122893 60 NZ_CP023319 Bacillus megaterium strain A plasmid p2, complete sequence 75825-75884 7 0.883
NZ_CP022891_1 1.1|1122834|60|NZ_CP022891|CRISPRCasFinder 1122834-1122893 60 NC_020451 Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence 1960-2019 9 0.85
NZ_CP022891_1 1.1|1122834|60|NZ_CP022891|CRISPRCasFinder 1122834-1122893 60 NZ_CP015440 Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, complete sequence 64773-64832 12 0.8
NZ_CP022891_1 1.1|1122834|60|NZ_CP022891|CRISPRCasFinder 1122834-1122893 60 NZ_CP033045 Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence 483791-483850 13 0.783
NZ_CP022891_1 1.1|1122834|60|NZ_CP022891|CRISPRCasFinder 1122834-1122893 60 NZ_LR134399 Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence 57361-57420 14 0.767

1. spacer 1.1|1122834|60|NZ_CP022891|CRISPRCasFinder matches to NZ_CP024037 (Bacillus aryabhattai strain K13 plasmid unnamed2) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

2. spacer 1.1|1122834|60|NZ_CP022891|CRISPRCasFinder matches to NZ_CP026740 (Bacillus megaterium strain YC4-R4 plasmid unnamed4) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

3. spacer 1.1|1122834|60|NZ_CP022891|CRISPRCasFinder matches to NC_017139 (Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

4. spacer 1.1|1122834|60|NZ_CP022891|CRISPRCasFinder matches to NZ_CP010587 (Bacillus megaterium Q3 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

5. spacer 1.1|1122834|60|NZ_CP022891|CRISPRCasFinder matches to NZ_CP023319 (Bacillus megaterium strain A plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

6. spacer 1.1|1122834|60|NZ_CP022891|CRISPRCasFinder matches to NC_020451 (Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence) position: , mismatch: 9, identity: 0.85

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcattttagttatggcccggg	Protospacer
****************************************** ***   * ***  **. 

7. spacer 1.1|1122834|60|NZ_CP022891|CRISPRCasFinder matches to NZ_CP015440 (Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, complete sequence) position: , mismatch: 12, identity: 0.8

cagcttggaaggctgaggttttaccactaaactacacccgca-------atttttatttg	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcataataatatataccattg	Protospacer
******************************************       ** * .  ***

8. spacer 1.1|1122834|60|NZ_CP022891|CRISPRCasFinder matches to NZ_CP033045 (Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence) position: , mismatch: 13, identity: 0.783

cagcttggaaggctgaggttttaccactaaactacacccgc--------aatttttattt	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatggttaaaagttttgcca	Protospacer
*****************************************        ** ****... 

9. spacer 1.1|1122834|60|NZ_CP022891|CRISPRCasFinder matches to NZ_LR134399 (Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence) position: , mismatch: 14, identity: 0.767

cagcttggaaggctgaggttttaccactaaactacacccgc---------aatttttatt	CRISPR spacer
cagcttggaaggctgtagttttaccactaaactacacccgcatagtaagtagttcttagt	Protospacer
*************** .************************         *.**.*** *

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 2433 : 36485 38 Bacillus_phage(55.56%) transposase,coat NA
DBSCAN-SWA_2 122209 : 180515 60 Bacillus_phage(63.64%) transposase,holin NA
DBSCAN-SWA_3 396041 : 402136 8 Staphylococcus_phage(66.67%) NA NA
DBSCAN-SWA_4 653929 : 697406 45 Enterobacteria_phage(25.0%) transposase,coat,holin NA
DBSCAN-SWA_5 778668 : 832140 56 uncultured_Mediterranean_phage(12.5%) coat,tRNA,protease NA
DBSCAN-SWA_6 1086224 : 1137216 44 Staphylococcus_phage(20.0%) coat,transposase,holin NA
DBSCAN-SWA_7 1269465 : 1366175 114 Bacillus_phage(37.78%) coat,portal,protease,tail,holin,capsid,integrase,plate,terminase,transposase,head attL 1310157:1310178|attR 1347437:1347458
DBSCAN-SWA_8 1447942 : 1515508 80 Bacillus_phage(65.22%) portal,protease,tail,holin,capsid,integrase,plate,terminase,transposase,head attL 1459010:1459032|attR 1498673:1498695
DBSCAN-SWA_9 1836344 : 1929809 93 Bacillus_phage(20.0%) coat,protease,transposase,tRNA,bacteriocin NA
DBSCAN-SWA_10 2146844 : 2202357 49 Klosneuvirus(20.0%) transposase,protease,holin NA
DBSCAN-SWA_11 2914605 : 3008333 102 uncultured_Caudovirales_phage(27.08%) coat,portal,protease,tail,capsid,holin,integrase,plate,terminase,transposase,head,tRNA attL 2924989:2925007|attR 2968250:2968268
DBSCAN-SWA_12 3011663 : 3020029 8 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_13 3067687 : 3133922 55 Tupanvirus(20.0%) coat,transposase NA
DBSCAN-SWA_14 3531099 : 3579067 54 Planktothrix_phage(44.44%) transposase,coat,tRNA NA
DBSCAN-SWA_15 3621093 : 3699614 83 uncultured_Caudovirales_phage(28.21%) portal,holin,terminase,transposase,tRNA NA
DBSCAN-SWA_16 3814539 : 3871332 57 Bacillus_phage(40.0%) transposase NA
DBSCAN-SWA_17 4132158 : 4178443 49 Bacillus_phage(50.0%) coat,protease,terminase,transposase,tRNA NA
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Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP022891.1|WP_003244522.1|3102235_3102403_+|YezD-family-protein 3102235_3102403_+ 55 aa aa NA NA NA 3067687-3133922 yes