CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP018628	Lelliottia jeotgali strain PFL01 chromosome, complete genome	6 crisprs	cas3,DEDDh,csa3,WYL,DinG	1	1	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP018628_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018628_1

285691-285833

Orphan

Consensus_repeat	Method
CGCTTACCGGGCCTACAAAACCCGAACGTAGGCCGGGTAAGGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP018628_1

>merge|NZ_CP018628|1|285691-285833|CRISPRCasFinder
CGCTTACCGGGCCTACAAAACCCGAACGTAGGCCGGGTAAGGCGCAGCCGCCACCCGGCTTTTTATCGGCACCGGAGCCGGAATTGTCCGGTGGCGCTGCGCTTACCGGGCCTACAAAACCTGAACGTAGGCCGGGTAAGGCG

>NZ_CP018628|1|1|285691-285833|CRISPRCasFinder
CGCTTACCGGGCCTACAAAACCCGAACGTAGGCCGGGTAAGGCG	CAGCCGCCACCCGGCTTTTTATCGGCACCGGAGCCGGAATTGTCCGGTGGCGCTG
CGCTTACCGGGCCTACAAAACCTGAACGTAGGCCGGGTAAGGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018628.1\|WP_095280342.1\|286003_286717_+\|acid-phosphatase-AphA	unknown	unknown	gnl\|CDD\|236818
NZ_CP018628.1\|WP_095280337.1\|280621_281605_-\|quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|182701
NZ_CP018628.1\|WP_095280332.1\|276382_276898_-\|zinc-uptake-transcriptional-repressor-Zur	unknown	unknown	gnl\|CDD\|183251
NZ_CP018628.1\|WP_095280336.1\|280198_280441_+\|envelope-stress-response-protein-PspG	unknown	unknown	gnl\|CDD\|181875
NZ_CP018628.1\|WP_095280350.1\|295538_296531_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226868
NZ_CP018628.1\|WP_095280344.1\|287184_290013_-\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NZ_CP018628.1\|WP_095280349.1\|295117_295369_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018628.1\|WP_095280343.1\|286834_287188_+\|MmcQ/YjbR-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|225197
NZ_CP018628.1\|WP_095280333.1\|277013_277502_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380353
NZ_CP018628.1\|WP_095280338.1\|281679_283092_+\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|181193
NZ_CP018628.1\|WP_095280331.1\|276106_276316_+\|CsbD-family-protein	unknown	unknown	gnl\|CDD\|182452
NZ_CP018628.1\|WP_095280347.1\|292482_293244_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_CP018628.1\|WP_095280335.1\|279064_280060_+\|tRNA-dihydrouridine(20/20a)-synthase-DusA	unknown	unknown	gnl\|CDD\|236991
NZ_CP018628.1\|WP_095280348.1\|293322_294828_-\|sensor-domain-containing-diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NZ_CP018628.1\|WP_095280339.1\|283245_284325_+\|alanine-racemase	unknown	unknown	gnl\|CDD\|143500
NZ_CP018628.1\|WP_095280340.1\|284445_285639_+\|aromatic-amino-acid-transaminase	unknown	unknown	gnl\|CDD\|181731
NZ_CP018628.1\|WP_095280351.1\|296869_298966_-\|flagellar-biosynthesis-protein-FlhA	unknown	unknown	gnl\|CDD\|235672
NZ_CP018628.1\|WP_095280334.1\|277672_278983_+\|conjugal-transfer-protein-TraF	unknown	unknown	gnl\|CDD\|372693
NZ_CP018628.1\|WP_167381221.1\|290904_292338_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_CP018628.1\|WP_095280345.1\|290259_290787_+\|single-stranded-DNA-binding-protein-SSB1	unknown	unknown	gnl\|CDD\|236362

Protein	Function_ID	Function_description	E-value
NZ_CP018628.1\|WP_095280342.1\|286003_286717_+\|acid-phosphatase-AphA	gnl\|CDD\|236818	PRK11009, aphA, class B acid phosphatase.	3.11818e-169
NZ_CP018628.1\|WP_095280337.1\|280621_281605_-\|quinone-oxidoreductase	gnl\|CDD\|182701	PRK10754, PRK10754, NADPH:quinone reductase.	0
NZ_CP018628.1\|WP_095280332.1\|276382_276898_-\|zinc-uptake-transcriptional-repressor-Zur	gnl\|CDD\|183251	PRK11639, PRK11639, zinc uptake transcriptional repressor Zur.	3.13698e-120
NZ_CP018628.1\|WP_095280336.1\|280198_280441_+\|envelope-stress-response-protein-PspG	gnl\|CDD\|181875	PRK09459, pspG, envelope stress response protein PspG.	1.8796e-22
NZ_CP018628.1\|WP_095280350.1\|295538_296531_+\|hypothetical-protein	gnl\|CDD\|226868	COG4461, LprI, Uncharacterized protein conserved in bacteria, putative lipoprotein [Function unknown].	4.70594e-34
NZ_CP018628.1\|WP_095280344.1\|287184_290013_-\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NZ_CP018628.1\|WP_095280343.1\|286834_287188_+\|MmcQ/YjbR-family-DNA-binding-protein	gnl\|CDD\|225197	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown].	1.97992e-48
NZ_CP018628.1\|WP_095280333.1\|277013_277502_+\|cupin-domain-containing-protein	gnl\|CDD\|380353	cd02224, cupin_SPO2919-like, Silicibacter pomeroyi SPO2919 and related proteins, uncharacterized sugar phosphate isomerase with a cupin domain. This family includes proteins similar to sugar phosphate isomerase SPO2919 from Silicibacter pomeroyi and Afe_0303 from Acidithiobacillus ferrooxidans, but are as yet uncharacterized. Structures of these proteins show a cupin fold with a conserved "jelly roll-like" beta-barrel fold that form a homodimer.	7.00626e-43
NZ_CP018628.1\|WP_095280338.1\|281679_283092_+\|replicative-DNA-helicase	gnl\|CDD\|181193	PRK08006, PRK08006, replicative DNA helicase DnaB.	0
NZ_CP018628.1\|WP_095280331.1\|276106_276316_+\|CsbD-family-protein	gnl\|CDD\|182452	PRK10428, PRK10428, hypothetical protein; Provisional.	1.85189e-31
NZ_CP018628.1\|WP_095280347.1\|292482_293244_-\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	2.46956e-44
NZ_CP018628.1\|WP_095280335.1\|279064_280060_+\|tRNA-dihydrouridine(20/20a)-synthase-DusA	gnl\|CDD\|236991	PRK11815, PRK11815, tRNA dihydrouridine(20/20a) synthase DusA.	0
NZ_CP018628.1\|WP_095280348.1\|293322_294828_-\|sensor-domain-containing-diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	7.53864e-44
NZ_CP018628.1\|WP_095280339.1\|283245_284325_+\|alanine-racemase	gnl\|CDD\|143500	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases. This subfamily is composed mainly of proteobacterial alanine racemases (EC 5.1.1.1), fold type III PLP-dependent enzymes that catalyze the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. hese proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.	0
NZ_CP018628.1\|WP_095280340.1\|284445_285639_+\|aromatic-amino-acid-transaminase	gnl\|CDD\|181731	PRK09257, PRK09257, aromatic amino acid transaminase.	0
NZ_CP018628.1\|WP_095280351.1\|296869_298966_-\|flagellar-biosynthesis-protein-FlhA	gnl\|CDD\|235672	PRK06012, flhA, flagellar type III secretion system protein FlhA.	0
NZ_CP018628.1\|WP_095280334.1\|277672_278983_+\|conjugal-transfer-protein-TraF	gnl\|CDD\|372693	pfam13729, TraF_2, F plasmid transfer operon, TraF, protein.	6.76012e-81
NZ_CP018628.1\|WP_167381221.1\|290904_292338_-\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	4.70278e-77
NZ_CP018628.1\|WP_095280345.1\|290259_290787_+\|single-stranded-DNA-binding-protein-SSB1	gnl\|CDD\|236362	PRK09010, PRK09010, single-stranded DNA-binding protein; Provisional.	2.43478e-112

>NZ_CP018628.1|WP_095280340.1|284445_285639_+|aromatic-amino-acid-transaminase
MFQKVDAYAGDPILSLMERFKEDSRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAVPHGASLYLPMEGLNTYRNTIAPLLFGADHPVLAQKRVATIQTLGGSGALKVGADFLKKYFPDSGVWVSDPTWENHVAIFEGAGFAVSTYPWFDNDTKGVCVEALLEKLRTLPERSIVLLHPCCHNPTGSDLTNNEWDAVIEVLKARNLIPFLDIAYQGFGAGMEDDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSIVCEDADAAGRVLGQLKATVRRIYSSPPAFGAQVVATVLGDDGLKAAWLAEVEAMRTRILAMRQELVKALKSALPEHNFDYLLKQRGMFSYTGLSAQQVDRLREEFGVYLIASGRMCVAGLNAHNVQRVAQAFAVVM
>NZ_CP018628.1|WP_095280339.1|283245_284325_+|alanine-racemase
MQAATVVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLETARTLPDADAFGVARLEEALRLRAGGITQPILLLEGFFEAADLTTIADQHLHTAVHNEEQLAALETADLSEPVTVWMKLDTGMHRLGVRPEQAEAFYQRLSQCKNVRQPVNIVSHFARADEPECGATEQQLDIFNTFCEGKPGMRSIAASGGILLWPQSHFDWARPGIILYGVSPLEGKPWGPDFGFQPVMSLVSNLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAAPSGTPVLVNGREVQVVGRVAMDMICVDLGPEADDKAGDPVVMWGEGLPVERIAEITKVSAYELITRLTSRVAMKYID
>NZ_CP018628.1|WP_095280338.1|281679_283092_+|replicative-DNA-helicase
MAGNKPFNKQTEPRERDLQVAGLKVPPHSIEAEQSVLGGLMLDNERWDDVAERVVSDDFYTRPHRHIFTEMARLQESGSPIDLITLAESLERQGQLDSVGGFAYLAELSKNTPSAANISAYADIVRERAVVREMIAVANEIAEAGFDPQGRTSEDLLDLAESRVFKIAESRANKDEGPRNIAEVLDSTIARIEQLFQQPHDGVTGVNTGYDDLNKKTAGLQPSDLIIVAARPSMGKTTFAMNLVENAAMLQDKPVLIFSLEMPSDQIMMRSLASLSRVDQTRIRTGQLDDEDWARISGTMGILLEKRNIYIDDSSGLTPTEVRSRARRIAREHGGIGLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKELQVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYHENSDMKGIAEIIIGKQRNGPIGTVRLTFNGQWSRFDNYAGPQYDDE
>NZ_CP018628.1|WP_095280337.1|280621_281605_-|quinone-oxidoreductase
MATRIEFHKHGGPEVLKAVEFTPAAPGENEIQVENKAIGINYIDTYIRGGLYPPPSMPSGLGTEAAGIVVKVGSGVKHIKEGDRVVYAQSPLGAYSSVHNVPADKAAILPNAISFEQAAASFLKGLTVYYLLRKTYEIKPDEPFLFHAAAGGVGLIACQWAKALGAKLIGTVGSAQKAQRALQAGAWQVINYREENIAERVKEITGGKKLRVVYDSVGKDTWEASLDCLQRRGLMVSFGNASGAVTGVNLGILNQKGSLYVTRPSLQGYITTRDELTEASNELFSLIASGVIKVDVADAQKYPLSDAQRAHEVLESRVTQGSSLLIP
>NZ_CP018628.1|WP_095280336.1|280198_280441_+|envelope-stress-response-protein-PspG
MLELLFVIGFFVMLMATGISLLGILAALVVATVVMFIGGLFALMIKLLPWLLLAVAVVWVIRMVKTPKVPQYQRNNRFRY
>NZ_CP018628.1|WP_095280335.1|279064_280060_+|tRNA-dihydrouridine(20/20a)-synthase-DusA
MSSELQSHFPAHRFSIAPMLDWTDRHCRYFLRQLSRHTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAALAHCAKLAQERGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCIKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVAGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLDEAKAHLDHMDGVMVGREAYQNPGILATVDREIFGIDGTDTDPVAVVRAMYPYIERELSNGTYLGHVTRHMLGLFQGIPGARQWRRYLSENAHKAGADIEVLEQALRLVADKR
>NZ_CP018628.1|WP_095280334.1|277672_278983_+|conjugal-transfer-protein-TraF
MKKHFKFSVVSIAVSLLMANQAGAANTWTEARSDAMGGTGVASGHYGSGAFINPALLAKAKPDDDITVILPSVGAQITDKDNLQDQIDDISDKVDHYDNVINSLTPAEIIANPLGSVNQFQSAAKDLADELDDLKGKTARATAGAGIAVSIPNNVLAVAFVAKGNAHARVSSSIDQQDIDYLRSIQNSKLVAGSVALDAALNGSDQITKNLNSTASGRAAIVSDYGVAVARQFDIADVPVSVGITPKLQKTWLYNYTTSIYTYDSNDWNSSRYRTDDTGFNVDAGVTADFGENWTVGLSGQNLMSRDIDTKDIRIRNGRTGEVVSYKDTYQIRPLVTAGVAWHNDLVTLTADGDLTETKGFKSEENSQYVGVGAEVTPLSWLAVRAGYRADVKDNDSNVFTGGVGFAPFNAVHVDLMGLYGEDKTWGAGAQLSVTF
>NZ_CP018628.1|WP_095280333.1|277013_277502_+|cupin-domain-containing-protein
MKRPECIRHWRDVEGADDSTYPDSDELFAIGAPLARKLGLGRIGIHHERLPPGRRTSYPHAESDEEEFIFVIEGHPQAWINGYLWKLEPGDSVGFPAGTGVCHTFINNTDEEVRLLVVGEANKKQNRIYYPLNPVYAATREDRWVDHPPQFFGPHDGKPGRK
>NZ_CP018628.1|WP_095280332.1|276382_276898_-|zinc-uptake-transcriptional-repressor-Zur
MDKTTMQDLLAQAEKLCAQRNVRLTPQRLEVLRLMSLQRGAISAYDLLDLLRESEPQAKPPTVYRALDFLLEQGFVHKVESTNSYVLCHLFDQPTHTSAMFICDRCGAVKEEGAEGVEDILHSLAAKMGFALRHNVIEAHGLCSACVEVEACRHQGECQHDHSVMVKKKPR
>NZ_CP018628.1|WP_095280331.1|276106_276316_+|CsbD-family-protein
MNKDEIGGNWKQFKGKAKEQWGKLTDDDVTVIEGKREQLVGKIQERYGYAKDQAEKEVVDWEKRNDYRW
>NZ_CP018628.1|WP_095280342.1|286003_286717_+|acid-phosphatase-AphA
MRKITLALSAACLLFSLNSAVGARASAPTPLYTGTTAAILAEQAPIHWVSVAQIENSLMGRAPMAVGFDIDDTVLFSSPGFWRGKKTYSPGSEEYLKNPEFWEKMNNGWDEFSIPKEVGRALIAMHVKRGDSIYFVTGRSQTKTETVTKTLQGDFSIPAANMNPVIFAGDKHGQNTKTQWLEQKNIKVFYGDSDNDISAARDVGARGIRVLRASNSTYRPLPMAGSFGEEVIVNSEY
>NZ_CP018628.1|WP_095280343.1|286834_287188_+|MmcQ/YjbR-family-DNA-binding-protein
MTISEILQYCMNKPGAGQSVHSDWKATQIKVADVLFAMVKEVEGRPAASLKTSPELADLLRQQHSDVRPSKHLNKAHWSTVYLDGSLPDSQIYYLVDASYKQAFELLPENTRQQLSV
>NZ_CP018628.1|WP_095280344.1|287184_290013_-|excinuclease-ABC-subunit-UvrA
MDKIEVRGARTHNLKNINLIIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRCPDHDVPLAAQTVSQMVDNVLAQPEGKRLMLLAPIIKERKGEHTKTLENLASQGYIRARIDGEVCDLSDPPKLELQKKHTIEVVIDRFKVRDDLTQRLAESFETALDLSGGSAIVADMDDAKAEEMLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRIIQNPELSLAGGAIRGWDRRNFYYFQMLKSLAEHYKFDVEAPWASLSPNVHKVVLSGSGKENIEFKYMNDRGDTSVRRHPFEGVLHNMERRYKETESSAVREELAKFISNRSCTTCEGTRLRREARHVFVENTALPTISDMSIGHAMDFFTNLKLSGQRAQIAEKVLKEIGDRLKFLVNVGLNYLSLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLIHLRNLGNTVIVVEHDEDAIRAADHVIDIGPGAGVHGGQVVAEGTLADIMAVPESLTGQFMSGKRKIEVPKQRVAANPEKVLKLSGARGNNLKDVTLTLPVGLFTCVTGVSGSGKSTLINDTLFPIAQTQLNGATLAEPAPYRDIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGVFTPVRELFAGVPEARSRGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIKYKGKTIHEVLDMTIEEAREFFDAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKLARELSKRGTGQTLYILDEPTTGLHFADIQQLLEVLHQLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEILVSGTPETVAECEASHTARFLKPLLES
>NZ_CP018628.1|WP_095280345.1|290259_290787_+|single-stranded-DNA-binding-protein-SSB1
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGETKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYIEGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQQGSWGQPQQPQGGNQFSGGAQSRPQQQSAPAPSNEPPMDFDDDIPF
>NZ_CP018628.1|WP_167381221.1|290904_292338_-|EAL-domain-containing-protein
MQNNNQKNIEREAHHLQNILDSFINDAHSATQQAAGLIGKVCDFTVEKELNMIPGRYMHIYSINIVNNKHISCSSLLANKHADVQHIISSGERIWMSQAVSSPDIEVISFKTSLPQGDVYVASDIRYLLDVLRGSTSGRQLALEVSGKTLTAAGLSATPLSSPHFSGYTVYPANSSLYTLAWEQPRPGKAVNAMARSWISISFILAMSLIMASVVWLLATRRHSLYTQLANAIRLHQIHPHYQPLICAHTNIISGAEILARWNHEELGFVPPDVFIPVAERTALIIDLTESLLEQVVDDLQQGVIALAPGFNLNLNISYSHLADDAFDAFVDNWAPVFAALGVTLVFEITERENIDISEAMARKITHIKTRGIKIALDDFGTGFSNLAFISNLRPDSIKIDRMFVRQISLDVATPLIDCVIDMAKRMNILTTAEGVEYDYQVEYLKANQIDCLQGYYFSKPLAFGDFAMFLRSYAVR
>NZ_CP018628.1|WP_095280347.1|292482_293244_-|EAL-domain-containing-protein
MEKSTHFVVQCVEKNRLDAGIDFVIQPIFDLSRFACIGGEVLVRGTHRRNIVPPNLFISQLEETGGILPMGDYLMAQAFKFIAAQPQAMRENQLFTLNISQVQLNDADFASRAMSLLQQNHLPPRNFIFEITDSVDQPEDAVTQNLGQLSEAGINLAWDGINCLDTLQARLAIWTTDYIKLDRSCLAPANIDKTFLLLEYINEIDIDVIIEGVENYTHVSTMLRHGVKYGQGFLFSRPISKENFHQEYMQPEH
>NZ_CP018628.1|WP_095280348.1|293322_294828_-|sensor-domain-containing-diguanylate-cyclase
MITSLNFRRPLNICFSALSFTLVIVCFLITLAQWADIKESCKRQNRLYINNVTLFFNKYLSGYENIVNEMARTAADQHKFNPNENDDLALRNWLIERLRIMPDAVSIIHADNDGHFIRLPHLESHQEKGATWDPRKEPWFTIAVEDTDSAHYSVTKDIFTGKERVLTISLPVINGMDGSNNGVLAINLDVEKSEEILNSTYPPMKSRTFVMTKEGQMVISPGYKIADSTLKAIASNASAFRGDFYRNGFYYFYRTIGPQEWFVVQEVAESEMKQLVRHGSIKVLYGMVLTQVILLFCWWALRAALNTIYMRITNGIRNGSIKQTAVEELLFDEIHSAQQRQEKISQDALTDGLTGLANRRAFDTDAEHYNALPNTHIAMIDIDNFKIINDTWGHTVGDVVLKATAELGLRLRGLENITLYRYGGEEIAVLFQDISQEKAQSYLEKWRISLNTRSFRESDLRVSFSAGICKMGGDSLSDVVAKADRLLYQAKKSGKNRILAS
>NZ_CP018628.1|WP_095280349.1|295117_295369_-|hypothetical-protein
MMKIDSSNLTMATVAAYGSQTDASRSPLGIKRSSGNACPQSGYWQIDNPAVTNVVNVKKGDTMPWQNGYPVNWKLIEYDLKNE
>NZ_CP018628.1|WP_095280350.1|295538_296531_+|hypothetical-protein
MTSRFCRFLFLLTLLFSTSAMAVNCQRAVTPLENTICNNDNLHWLDSTLSVVYQQAIHEEGLEGNDKEYREWEKLLEKCTSDTCIERAYYAGISALADTNRDFKWEGKWWNMRAPNMSGGVIQFSRSAKWSETLDIRAWAGLNKDEFTAEARKLYGMLVVERVVDTSNCKLLVIPKKNGSLQVYSNADWGCRMSMPPGVFLDGAYQMAESDPRPKATLLSLGIFPDATLDDKFRALVGDDYQSFVNSANVYIYQDDIDNIGARVISMWVQGSANKRTAIVMYTPKGEIWAGRISPAKEGGLMFSYYSTDGSDQRKMPRTLAGWKLRFLDE
>NZ_CP018628.1|WP_095280351.1|296869_298966_-|flagellar-biosynthesis-protein-FlhA
MANSKSQQMLAILRQGRIGVPILLLSVLAMVMLPLSPLMLDILFTFNIVLAVTVLLVAVNMQRPLDFAVFPTLLLITTLMRLTLNVASTRVVLLHGHEGEGAAGKVIEAFGQVVIGGDFVVGFVVFIILMIINFVVVTKGAERISEVSARFTLDALPGKQMAIDADLNAGLINQKQARDRRKEVSKEADFYGAMDGASKFVRGDAIAGIMVLVINVIGGICIGIFKYDLDAGHAFQQYVLLTIGDGLAAQIPSLLLATAAAIIVTRVSDGDDVSDEIKTQLLAKPHVLYTAAFVMFILAIVPGMPHIAFLCFTGLLLFAAWRQSKVVKPAEEETDYEAITDALGQDVAPAINWESIPLVEPIGLNLGYKLVTLIDSAKGSPLSQRIRGVRQVVSEQCGVLLPEIRIRENFRLKPAQYAIYINGIRTTLAEVYAEKLMAIPGTELYGEIDGVLDTDPAYGMAIVWIDAEQKAKALNLGYQVVDCASVVATHVNKVAREHLPELFNYDDITHLHSRLAQQAPKLAEDLSNALNFSLLLRIYRQLLLEQVSLKDIVTIASTLLESSAVTKDPILLTSDVRYALRRAIIHNINGDRQKLSAYTIDNALENMLLGALNQSQQSGKVALDSFPVDPNILTQLQNTMPIIQEQMKAKGMPPLLLVTPQLRPLISRYGRLFASNLNVLSYNEVPDDSDLTIVGTLS

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Crispr_ID: NZ_CP018628_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018628_2

460286-460367

Orphan

Consensus_repeat	Method
GCGCTTATCCGGCCTACGAAGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP018628_2

>merge|NZ_CP018628|2|460286-460367|CRISPRCasFinder
GCGCTTATCCGGCCTACGAAGGCGACAAATGCACGAAATTCTGTTGCCGGATGGCGCTAGCGCTTATCCGGCCTACGAAGAC

>NZ_CP018628|2|2|460286-460367|CRISPRCasFinder
GCGCTTATCCGGCCTACGAAGGC	GACAAATGCACGAAATTCTGTTGCCGGATGGCGCTA
GCGCTTATCCGGCCTACGAAGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018628.1\|WP_095280512.1\|465959_466517_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018628.1\|WP_095280504.1\|457049_457694_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225603
NZ_CP018628.1\|WP_000135199.1\|455206_455434_+\|30S-ribosomal-protein-S18	unknown	unknown	gnl\|CDD\|178997
NZ_CP018628.1\|WP_095280502.1\|455475_455925_+\|50S-ribosomal-protein-L9	unknown	unknown	gnl\|CDD\|234659
NZ_CP018628.1\|WP_095280501.1\|453866_454142_-\|DUF1471-domain-containing-protein	unknown	unknown	gnl\|CDD\|369322
NZ_CP018628.1\|WP_095280516.1\|469734_470238_+\|protein-disulfide-oxidoreductase	unknown	unknown	gnl\|CDD\|239309
NZ_CP018628.1\|WP_095280500.1\|453100_453787_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|183460
NZ_CP018628.1\|WP_014068638.1\|454887_455202_+\|primosomal-replication-protein-N	unknown	unknown	gnl\|CDD\|235071
NZ_CP018628.1\|WP_011915632.1\|454485_454881_+\|30S-ribosomal-protein-S6	unknown	unknown	gnl\|CDD\|179034
NZ_CP018628.1\|WP_095280507.1\|460420_461083_-\|iron-sulfur-cluster-repair-protein-YtfE	unknown	unknown	gnl\|CDD\|236812
NZ_CP018628.1\|WP_095280505.1\|457888_458548_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|183207
NZ_CP018628.1\|WP_095280508.1\|461331_462981_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP018628.1\|WP_095280514.1\|467145_469158_+\|DUF255-domain-containing-protein	unknown	unknown	gnl\|CDD\|226685
NZ_CP018628.1\|WP_095280506.1\|458855_460265_+\|D-serine/D-alanine/glycine-transporter	unknown	unknown	gnl\|CDD\|236830
NZ_CP018628.1\|WP_095280510.1\|464114_464939_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP018628.1\|WP_095280515.1\|469160_469745_+\|thioredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|239321
NZ_CP018628.1\|WP_095280511.1\|465020_465869_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187578
NZ_CP018628.1\|WP_095280513.1\|466737_467097_+\|copper-resistance-protein	unknown	unknown	unknown
NZ_CP018628.1\|WP_095280509.1\|463076_464039_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP018628.1\|WP_095280503.1\|456078_457014_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769

Protein	Function_ID	Function_description	E-value
NZ_CP018628.1\|WP_095280504.1\|457049_457694_-\|hypothetical-protein	gnl\|CDD\|225603	COG3061, OapA, Cell envelope opacity-associated protein A [Cell envelope biogenesis, outer membrane].	9.77302e-67
NZ_CP018628.1\|WP_000135199.1\|455206_455434_+\|30S-ribosomal-protein-S18	gnl\|CDD\|178997	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed.	1.93012e-37
NZ_CP018628.1\|WP_095280502.1\|455475_455925_+\|50S-ribosomal-protein-L9	gnl\|CDD\|234659	PRK00137, rplI, 50S ribosomal protein L9; Reviewed.	7.23045e-68
NZ_CP018628.1\|WP_095280501.1\|453866_454142_-\|DUF1471-domain-containing-protein	gnl\|CDD\|369322	pfam07338, DUF1471, Protein of unknown function (DUF1471). This family consists of several hypothetical Enterobacterial proteins of around 90 residues in length. Some members of this family are annotated as ydgH precursors and contain two copies of this region, one at the N-terminus and the other at the C-terminus. The function of this family is unknown.	1.87538e-14
NZ_CP018628.1\|WP_095280516.1\|469734_470238_+\|protein-disulfide-oxidoreductase	gnl\|CDD\|239309	cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.	3.77099e-47
NZ_CP018628.1\|WP_095280500.1\|453100_453787_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|183460	PRK12348, sgaE, L-ribulose-5-phosphate 4-epimerase; Reviewed.	1.90922e-173
NZ_CP018628.1\|WP_014068638.1\|454887_455202_+\|primosomal-replication-protein-N	gnl\|CDD\|235071	PRK02801, PRK02801, primosomal replication protein N; Provisional.	1.31026e-66
NZ_CP018628.1\|WP_011915632.1\|454485_454881_+\|30S-ribosomal-protein-S6	gnl\|CDD\|179034	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed.	7.25389e-55
NZ_CP018628.1\|WP_095280507.1\|460420_461083_-\|iron-sulfur-cluster-repair-protein-YtfE	gnl\|CDD\|236812	PRK10992, PRK10992, iron-sulfur cluster repair protein YtfE.	2.14231e-156
NZ_CP018628.1\|WP_095280505.1\|457888_458548_+\|peptidylprolyl-isomerase	gnl\|CDD\|183207	PRK11570, PRK11570, peptidyl-prolyl cis-trans isomerase; Provisional.	3.42751e-145
NZ_CP018628.1\|WP_095280508.1\|461331_462981_+\|HAMP-domain-containing-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	0
NZ_CP018628.1\|WP_095280514.1\|467145_469158_+\|DUF255-domain-containing-protein	gnl\|CDD\|226685	COG4232, COG4232, Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion].	4.78202e-96
NZ_CP018628.1\|WP_095280506.1\|458855_460265_+\|D-serine/D-alanine/glycine-transporter	gnl\|CDD\|236830	PRK11049, PRK11049, D-alanine/D-serine/glycine permease; Provisional.	0
NZ_CP018628.1\|WP_095280510.1\|464114_464939_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	5.69416e-27
NZ_CP018628.1\|WP_095280515.1\|469160_469745_+\|thioredoxin-domain-containing-protein	gnl\|CDD\|239321	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.	6.90628e-54
NZ_CP018628.1\|WP_095280511.1\|465020_465869_-\|SDR-family-oxidoreductase	gnl\|CDD\|187578	cd05269, TMR_SDR_a, triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs. TMR is an atypical NADP-binding protein of the SDR family. It lacks the active site residues of the SDRs but has a glycine rich NAD(P)-binding motif that matches the extended SDRs. Proteins in this subgroup however, are more similar in length to the classical SDRs. TMR was identified as a reducer of triphenylmethane dyes, important environmental pollutants. This subgroup also includes Escherichia coli NADPH-dependent quinine oxidoreductase (QOR2), which catalyzes two-electron reduction of quinone; but is unlikely to play a major role in protecting against quinone cytotoxicity. Atypical SDRs are distinct from classical SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	2.33807e-103
NZ_CP018628.1\|WP_095280509.1\|463076_464039_-\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	1.61198e-12
NZ_CP018628.1\|WP_095280503.1\|456078_457014_+\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	2.34523e-16

>NZ_CP018628.1|WP_095280506.1|458855_460265_+|D-serine/D-alanine/glycine-transporter
MVDQVKVVADEEASSEQSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGPSIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDLLGPWAGYFTGWTYWFCWVVTGMADVVAITAYAQFWFPGLSDWVASLAVIVLLLSLNLATVKMFGEMEFWFAMIKIVAIVGLIVVGLVMILTHFQSPTGVQASFTHLWNDGGWFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWGSVVPTKSPFVELFVLVGLPAAASLINFVVLTSAASSANSGVFSTSRMLFGLAQEGVAPSAFAKLSKRAVPAKGLTFSCICLLGGVVMLYVNPSVIGAFTMITTVSAILFMFVWTIILCSYLVYRKQRPQLHEKSIYKMPLGKLMCWVCMAFFVFVLVLLTLEDDTRQALIVTPLWFIALGLGWLFIGKKRMAGVR
>NZ_CP018628.1|WP_095280505.1|457888_458548_+|peptidylprolyl-isomerase
MLPATLNVMEGKPMTTPTFDTIEAQASYGIGLQVGQQLSESGLEGLLPEALVAGIADALEGKHPAVPVDVVHRALREVHERADAVRRERFEEMAAEGVKYLEENREKEGVNSTESGLQFRVITQGEGAIPARTNHVRVHYTGKLIDGTVFDSSVARGEPAEFPVNGVIPGWIEALTLMPVGSKWELTIPQNLAYGERGAGASIPPFSTLVFEVELLEIL
>NZ_CP018628.1|WP_095280504.1|457049_457694_-|hypothetical-protein
MPGRFELKPTLAKIWHAPDNFRIMDPLPPLHRRGIIIAALVVVIGFLLPSGDDSSDVQPVSRNAQLDIQSQSRPQPDQQPMQTQLVTPSNDPGLVAPVSPEPVQEEQPQEQAAAPVRSQAQQPPGIDQQWRAYRVEPGKTMAQLFRDHNLPPTDVYAMAQVEGEGKPLSNLQNGQMVQIRQNASGVVTGLTIDTGNGQQVLFMREQNGSFMRVK
>NZ_CP018628.1|WP_095280503.1|456078_457014_+|DMT-family-transporter
MEASPSVPVFARKNIAYASATLCCLLWGSSYPAIKSGYELFQIATDDIPSKVVFAGYRFLFAGMLLLMFALAQRKPIARLTPRQFGQLTLLGLTQTTIQYTFFYIGLAYTTGVKGSIMNATGTFFSVLLAHFIYQNDKLSYNKTIGCVLGFAGVMLVNFNSGLMDFSFVWKGDGFVVLAAFILSAATLYGKRISQTVDPTVMTGWQLGIGGAVLVAGGYATGGTLEVHSMAAVAVLGYLTLLSSVAFALWSMLLKVNRVSMIAPFNFVIPVAGTVLSAIFLGENILDIKYAIALVLVCSGIWWVNKAKKVV
>NZ_CP018628.1|WP_095280502.1|455475_455925_+|50S-ribosomal-protein-L9
MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNVEFFETRRAELEAKLADVLAAANARAEAINALGTVTIASKSGDEGKLFGSIGTRDIADAVTAAGVEVAKSEVRMPNGVLRTTGEHEVDFQVHSEVFAKLVVNVVAE
>NZ_CP018628.1|WP_000135199.1|455206_455434_+|30S-ribosomal-protein-S18
MARYFRRRKFCRFTAEGVQEIDYKDIATLKNYITESGKIVPSRITGTRAKYQRQLARAIKRARYLSLLPYTDRHQ
>NZ_CP018628.1|WP_014068638.1|454887_455202_+|primosomal-replication-protein-N
MTNRLVLSGTVCRTPLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIISGHENQAITHSITVGSAVIVQGFISCHKAKNGLSKMVLHAEQIDLIDSGD
>NZ_CP018628.1|WP_011915632.1|454485_454881_+|30S-ribosomal-protein-S6
MRHYEIVFMVHPDQSEQVPGMIERYTGAITAAEGTIHRLEDWGRRQLAYPINKLHKAHYVLLNVEAPQEAIDELETNFRFNDAVIRSMVMRTKNAVTEASPMVKAKDERRERRDDFANETADDSDAGDSEE
>NZ_CP018628.1|WP_095280501.1|453866_454142_-|DUF1471-domain-containing-protein
MKNIVIAILAALLLSANAMAAIKIDGRQARNMDDVQSLGVIYINHNFATESEADQALNEETDAQGAKYYHVILTREPGSNGNMHASADIYR
>NZ_CP018628.1|WP_095280500.1|453100_453787_+|L-ribulose-5-phosphate-4-epimerase
MQQLKQQVFDANMDLPRYGLVTFTWGNVSAIDRERGWVAIKPSGVAYDVMQPEDMVVVDLDGNVIDGKWNPSSDTATHLALYRRYPSLGGVVHTHSTHATAWAQAGLAIPALGTTHADYFFGDIPCTRALTEEEVQGEYELNTGKVIIETVGEREPLHTPGIVVWQHGPFSWGKNAHDAVHNAVVMEEVAKMAWIARGINPQLQPIDSYLMNKHYLRKHGPNTYYGQK
>NZ_CP018628.1|WP_095280507.1|460420_461083_-|iron-sulfur-cluster-repair-protein-YtfE
MAFRDQPLGELALSIPRASALFRKYDMDYCCGGKQTLARAALRKELDVDAIEAELAQLAEQPIEKDWRSVALAEIIDHIIVRYHDRHREQLPELILQATKVERVHADKASVPRGLAKYLTMLHQELSSHMMKEEQILFPMIKQGMGSQAMGPISVMESEHDDAGELLEVIKHTTNNVTPPADACTTWKAMYNGINVLIDDLMEHISLENNVLFPRALSGE
>NZ_CP018628.1|WP_095280508.1|461331_462981_+|HAMP-domain-containing-protein
MFKRIKVITLLISVLLGLGAVQLISAGVFINALNNDKDNFTVSQLSSQNVAEFTDAWISLNQARVTLNRGMLRLQSSVASQINGGQLNELVATAKNLLAEAQGHYDKYYALPETPGMDENLSKELEEQYRVYSSTLTQMNTLLAQGNLEDMFKQNAEQKQTGMQKVYREWREAQAKLTSRGIQDNESDYNRILWILSAIMLVVLAVIITSWIAMRRVLLLPLHDVISHIRAIAAGDLTQPIDAQGKNEMAVLARNVQEMQTALANTVGVVREGADTIYTGAGEISAGSNDLSSRTEQQAASLEETAASMEQLTATVKQNADNARQASRLALDASTTAKKGGSVVEGVVRTMDEIATSSSKIAQITNVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRTLAQRSAQAAKEIKGLIDDSGDRVNAGSALVNQAGETMAEIVNAVTRVTDIMGEIASASDEQSRGIDQVGQAVAEMDRVTQQNASLVEESAAAAAALEDQAARLNEAVAVFKITRGQAVKAAPVKTYAAKAKPAATVNEAHWETF
>NZ_CP018628.1|WP_095280509.1|463076_464039_-|DMT-family-transporter
MIIGVLYALLAGLMWGLIFVGPLMVPEYPAVLQSMGRYLALGLIALPLAWLGRARLRQLTHHDWKTALALTMMGNIIYYVCLASAIQRTGAPVSTMIIGTLPVVIPVFANLLYSQRDGKLAWSKMVPALVCIAIGLALVNIAELRHADVGEFDGWRYGSGILLASVSVVCWAWYALRNARWLRENPDKHPMMWATAQALVTLPVSLLGYLASCWWQGLQQPEFALPFGPRPWVFVGLMVAIAVLCSWVGALCWNIASQKLPTVILGPLIVFETLAGLLYTFLMRQSVPPLLTGCGIALLVVGVVIAVRAKPEKPTVVPVA
>NZ_CP018628.1|WP_095280510.1|464114_464939_-|AraC-family-transcriptional-regulator
MQGVPEQFIDERDSARFRHLAQVPGVELYHAHISRYAFEPHTHEAFGIGAIEAGAERFRYRGTQYVAPVHSVVTMNPDELHTGEAATDDGWRYRMVYLDPDLLEEVTGIRHWWFSDVTRHDPLRSQQICQLIYGLWHTDDPLAQKGLLLDLIDTFQPLARHAPVIQEGSHRFERVREYLHDNYMHPVTLDELARVVSLSPYHFQRQFKAHFHVTPHQMLMAIRLWRAKAFLTLGMPAAEVAAATGLTDQSHLTRAFTHRYGITPVRYQKQVVRR
>NZ_CP018628.1|WP_095280511.1|465020_465869_-|SDR-family-oxidoreductase
MIAITGATGQLGQHVIENLLKTVPASQIVAIVRNPAKADALSQQGIVVRQADYTDRAAFTAALSGVNKLLLISSSEVGQRATQHQNVIDAAKAAGVKFIAYTSLLHADKSPLGLHVEHVQTEKALADSGIPYALLRNGWYTENYLASAPPAIEHGVFIGAAGEGKIASATREDYAAAAAIVVAGEGHEGKVYELAGDNAWTLSELAAELSKQSGKPVTYQNLSEADFAAALKGVGLPAGLADMLADSDTGASKGGLFDDSHTLSKLIGRPTTPLAESVKGIL
>NZ_CP018628.1|WP_095280512.1|465959_466517_-|hypothetical-protein
MEKKLLAGQIEHISWNSIVLKRGDTKDTIAIPARVLSQLETGQHLHLLFRKNCLVRIFNRSTQTVFETDFFAHHPGLRKYQTLIFLVAAMICALPVIGAAIGMILIAVLIGTSLKRNEEIAIKVALVSAVTAVSYVAVASLLLLNGHFWWGFIACALLVFIAFKSAATISAQEARLLSQEVSRNE
>NZ_CP018628.1|WP_095280513.1|466737_467097_+|copper-resistance-protein
MIPRQRKAFLLVALACLVVLVCTTQRMAGLHALLMNVSPVAQQTVQQSGEADAPVTPCELSAKSLLATPPIMFEGALFAITLILAVLAVVPPRPVRRWPPRVISPPRLRVHLRLCVFRE
>NZ_CP018628.1|WP_095280514.1|467145_469158_+|DUF255-domain-containing-protein
MHAFLRQLVLCLFWLWLPVSQAADSGWLRAADNNHASVRLRADAQEKGDTRLLLDVTLEKGWKTYWRSPGEGGIAPAIKWQTPLEMDWRWPVPQRFEVAGITTQGYDGKVSFPITLRGQLPGKLAGVLTLSTCSNVCILTDYPFALDLSAPADPQFNYDFSRALGTLPLSEGLTSQITAGFGAEKLTVTATREAGWQNPELFIDTLADTDFGKPVYQVDGQTLTASVPVSDGWGEAAPDLRGKTLSLVLADKGQAQESRVIVGETQSSDAPLSLGWIILMALVGGLILNVMPCVLPVLAMKLGSIVQTSSVNRRSVRQQFMASAAGIVTSFLALALMMTVLRLGNQALGWGIQFQNPWFIAAMALVMVIFSASLLGLFEIRLSSGLSTFLATRGGNGLLGHFCQGAFATLLATPCTAPFLGTAVSVALVAPLPLLWGIFLVMGVGMSLPWLLIAAWPGLALHMPRPGRWMNVVRVILGLMMLASALWLSSLLAVHIGPIPTLTLTAFIIIGLLLATLWRWGWRTALSWAVAATVALAILFSLLRPGSAALVEDRVAWQPLSEEAITAALAENKRVFVDVTADWCVTCKANKYNVLLRDEVQDALSAPDVVALRGDWSRPSTTISQFLHARQSAAVPFNQIYGPGLEQGRVLPPLLERDSLLQTLTDAKGK
>NZ_CP018628.1|WP_095280515.1|469160_469745_+|thioredoxin-domain-containing-protein
MRIMTFIMLMCFSAMSFAAEPDLENLLWNDPNTPAMGAEKPRLTLVSFTDYNCPYCKQFDPELEKIVQKYPDVKLVVKLLPFRSESSAHSARIAMTAWRQQPQQFWDLHHRLMSKKGYHDDASILAAQQKTGTAAIKADEKSGETLQMNLILSQVLGVQGTPATLVGKTMVAGAIPYDELEALVKQELANPDAQ
>NZ_CP018628.1|WP_095280516.1|469734_470238_+|protein-disulfide-oxidoreductase
MRSKYMRWLREGIVWLLIATATVLVVDQFRKPALPATFISTPLQTLDGESVDLAQKSHERPLLVYVWATWCGVCRYTTPSVAEMAEEGKNVITVALRSGEDPALSQWLAKKGYAMPTVNDPQGLLARSWQVQVTPTVMIVSQGEVKSITTGYTSGWGMKLRLWWAGV

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Crispr_ID: NZ_CP018628_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018628_3

1416086-1416359

Orphan

Consensus_repeat	Method
GGGGCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGG	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP018628_3

>merge|NZ_CP018628|3|1416086-1416359|PILER-CR
GGGGCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGCCCCACCAATACTACAGTTTTAAGTGAAAATTCAGGCAGCACCCGGAAGGGGCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGCCCCACCAGCCTGAATACAATTTGCAAGTCCCGAAAGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGG

>NZ_CP018628|3|1|1416086-1416359|PILER-CR
GGGGCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGG	TTCGAATCCTGCACGCCCCACCAATACTACAGTTTTAAGTGAAAATTCAGGCAGCACCCGGAA
GGGGCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGG	TTCGAATCCTGCACGCCCCACCAGCCTGAATACAATTTGCAAGTCCCGAAAG
GGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018628.1\|WP_095281286.1\|1413078_1414371_+\|Tol-Pal-system-protein-TolB	unknown	unknown	gnl\|CDD\|235143
NZ_CP018628.1\|WP_095281284.1\|1411218_1411647_+\|colicin-uptake-protein-TolR	unknown	unknown	gnl\|CDD\|236824
NZ_CP018628.1\|WP_095281289.1\|1417658_1418378_+\|nicotinamide-riboside-transporter-PnuC	unknown	unknown	gnl\|CDD\|185295
NZ_CP018628.1\|WP_095281288.1\|1416577_1417621_+\|quinolinate-synthase-NadA	unknown	unknown	gnl\|CDD\|236489
NZ_CP018628.1\|WP_095281296.1\|1424436_1425483_-\|galactose-1-phosphate-uridylyltransferase	unknown	unknown	gnl\|CDD\|236963
NZ_CP018628.1\|WP_095281293.1\|1421221_1421974_-\|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|184516
NZ_CP018628.1\|WP_003858578.1\|1414406_1414928_+\|peptidoglycan-associated-lipoprotein-Pal	unknown	unknown	gnl\|CDD\|182744
NZ_CP018628.1\|WP_165790670.1\|1409690_1409972_+\|cyd-operon-protein-YbgE	unknown	unknown	gnl\|CDD\|236721
NZ_CP018628.1\|WP_095281287.1\|1414937_1415732_+\|cell-division-protein-CpoB	unknown	unknown	gnl\|CDD\|182745
NZ_CP018628.1\|WP_095281280.1\|1409440_1409554_+\|cytochrome-bd-I-oxidase-subunit-CydX	unknown	unknown	gnl\|CDD\|227227
NZ_CP018628.1\|WP_032617092.1\|1410121_1410526_+\|tol-pal-system-associated-acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|182742
NZ_CP018628.1\|WP_095281297.1\|1425492_1426509_-\|UDP-glucose-4-epimerase-GalE	unknown	unknown	gnl\|CDD\|182639
NZ_CP018628.1\|WP_095281285.1\|1411675_1412944_+\|cell-envelope-integrity-protein-TolA	unknown	unknown	gnl\|CDD\|236545
NZ_CP018628.1\|WP_095281292.1\|1420106_1421159_+\|3-deoxy-7-phosphoheptulonate-synthase-AroG	unknown	unknown	gnl\|CDD\|236435
NZ_CP018628.1\|WP_095281283.1\|1410522_1411215_+\|Tol-Pal-system-protein-TolQ	unknown	unknown	gnl\|CDD\|182743
NZ_CP018628.1\|WP_095281279.1\|1408286_1409426_+\|cytochrome-d-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|184965
NZ_CP018628.1\|WP_095281295.1\|1423284_1424433_-\|galactokinase	unknown	unknown	gnl\|CDD\|179937
NZ_CP018628.1\|WP_095281294.1\|1422250_1423291_-\|galactose-1-epimerase	unknown	unknown	gnl\|CDD\|182931
NZ_CP018628.1\|WP_095281291.1\|1419420_1419789_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372863
NZ_CP018628.1\|WP_095281290.1\|1418374_1419313_-\|CDF-family-zinc-transporter-ZitB	unknown	unknown	gnl\|CDD\|235130

Protein	Function_ID	Function_description	E-value
NZ_CP018628.1\|WP_095281286.1\|1413078_1414371_+\|Tol-Pal-system-protein-TolB	gnl\|CDD\|235143	PRK03629, tolB, Tol-Pal system protein TolB.	0
NZ_CP018628.1\|WP_095281284.1\|1411218_1411647_+\|colicin-uptake-protein-TolR	gnl\|CDD\|236824	PRK11024, PRK11024, colicin uptake protein TolR; Provisional.	3.26031e-95
NZ_CP018628.1\|WP_095281289.1\|1417658_1418378_+\|nicotinamide-riboside-transporter-PnuC	gnl\|CDD\|185295	PRK15397, PRK15397, nicotinamide riboside transporter PnuC; Provisional.	6.90589e-168
NZ_CP018628.1\|WP_095281288.1\|1416577_1417621_+\|quinolinate-synthase-NadA	gnl\|CDD\|236489	PRK09375, PRK09375, quinolinate synthase NadA.	0
NZ_CP018628.1\|WP_095281296.1\|1424436_1425483_-\|galactose-1-phosphate-uridylyltransferase	gnl\|CDD\|236963	PRK11720, PRK11720, UDP-glucose--hexose-1-phosphate uridylyltransferase.	0
NZ_CP018628.1\|WP_095281293.1\|1421221_1421974_-\|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase	gnl\|CDD\|184516	PRK14115, gpmA, 2,3-diphosphoglycerate-dependent phosphoglycerate mutase.	0
NZ_CP018628.1\|WP_003858578.1\|1414406_1414928_+\|peptidoglycan-associated-lipoprotein-Pal	gnl\|CDD\|182744	PRK10802, PRK10802, peptidoglycan-associated lipoprotein Pal.	1.38395e-116
NZ_CP018628.1\|WP_165790670.1\|1409690_1409972_+\|cyd-operon-protein-YbgE	gnl\|CDD\|236721	PRK10588, PRK10588, hypothetical protein; Provisional.	2.45109e-54
NZ_CP018628.1\|WP_095281287.1\|1414937_1415732_+\|cell-division-protein-CpoB	gnl\|CDD\|182745	PRK10803, PRK10803, tol-pal system protein YbgF; Provisional.	9.86267e-166
NZ_CP018628.1\|WP_095281280.1\|1409440_1409554_+\|cytochrome-bd-I-oxidase-subunit-CydX	gnl\|CDD\|227227	COG4890, COG4890, Predicted outer membrane lipoprotein [Function unknown].	1.35749e-11
NZ_CP018628.1\|WP_032617092.1\|1410121_1410526_+\|tol-pal-system-associated-acyl-CoA-thioesterase	gnl\|CDD\|182742	PRK10800, PRK10800, acyl-CoA thioesterase YbgC; Provisional.	3.84526e-90
NZ_CP018628.1\|WP_095281297.1\|1425492_1426509_-\|UDP-glucose-4-epimerase-GalE	gnl\|CDD\|182639	PRK10675, PRK10675, UDP-galactose-4-epimerase; Provisional.	0
NZ_CP018628.1\|WP_095281285.1\|1411675_1412944_+\|cell-envelope-integrity-protein-TolA	gnl\|CDD\|236545	PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional.	1.47455e-65
NZ_CP018628.1\|WP_095281292.1\|1420106_1421159_+\|3-deoxy-7-phosphoheptulonate-synthase-AroG	gnl\|CDD\|236435	PRK09261, PRK09261, phospho-2-dehydro-3-deoxyheptonate aldolase; Validated.	0
NZ_CP018628.1\|WP_095281283.1\|1410522_1411215_+\|Tol-Pal-system-protein-TolQ	gnl\|CDD\|182743	PRK10801, PRK10801, Tol-Pal system protein TolQ.	1.9269e-165
NZ_CP018628.1\|WP_095281279.1\|1408286_1409426_+\|cytochrome-d-ubiquinol-oxidase-subunit-II	gnl\|CDD\|184965	PRK15003, PRK15003, cytochrome d ubiquinol oxidase subunit II.	0
NZ_CP018628.1\|WP_095281295.1\|1423284_1424433_-\|galactokinase	gnl\|CDD\|179937	PRK05101, PRK05101, galactokinase; Provisional.	0
NZ_CP018628.1\|WP_095281294.1\|1422250_1423291_-\|galactose-1-epimerase	gnl\|CDD\|182931	PRK11055, galM, galactose-1-epimerase; Provisional.	0
NZ_CP018628.1\|WP_095281291.1\|1419420_1419789_-\|hypothetical-protein	gnl\|CDD\|372863	pfam13985, YbgS, YbgS-like protein. This family of proteins is functionally uncharacterized. The family includes the YbgS protein from E. coli. This family of proteins is found in bacteria. Proteins in this family are approximately 130 amino acids in length. Some members of this family are annotated as homeobox protein, but this annotation cannot be verified.	3.70599e-29
NZ_CP018628.1\|WP_095281290.1\|1418374_1419313_-\|CDF-family-zinc-transporter-ZitB	gnl\|CDD\|235130	PRK03557, PRK03557, CDF family zinc transporter ZitB.	0

>NZ_CP018628.1|WP_095281287.1|1414937_1415732_+|cell-division-protein-CpoB
MSSNFRHQLLSLSLLVGIAAPWAAFAQAPISSVGSGSVEDRVTQLERISNAHSQLLTQLQQQLSDNQNDIDSLRGQIQESQYQLNQVVERQKQILLQIDGMSSGGAAAQPAAGDQSGAATATPAPSADASASTGAPVQSGDANTDYNAAIALVQDKSRQDDAIAAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAFYFASVVKNYPKSPKAPDAMFKVGVIMQDKGDSAKAKAVYQQVVTKYPGTEGAKQAQKRLGSMG
>NZ_CP018628.1|WP_003858578.1|1414406_1414928_+|peptidoglycan-associated-lipoprotein-Pal
MQLNKVLKGLMIALPVMAIAACSSNKNASNDQSGEGMMGAGTGMDANGNGNMSSEEQARLQMQQLQQNNIVYFDLDKYDIRSDFAAMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYSKNRRAVLVY
>NZ_CP018628.1|WP_095281286.1|1413078_1414371_+|Tol-Pal-system-protein-TolB
MKQALRVAVSFFMLWAAVLHAEVRIEITQGVDSARPIGVVPFQWAGPGAAPEDVGGIVAADLRNSGKFNPLDRSRLPQQPGTAQEVQPAAWSALGIDAVVVGQVTPNPDGGYTVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFTVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLSNGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDIGSGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNVNGGAPQRITWEGSQNQDSDVSSDGKFMVMVSSAGGQQHIAKQDLVTGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARIPATDGQVKSPAWSPYL
>NZ_CP018628.1|WP_095281285.1|1411675_1412944_+|cell-envelope-integrity-protein-TolA
MSKATEQNDKLKRAIIVSAVLHVILFAVLIWSSFDEHIDASAGGGGGSSIDAVMVDPGAVVQNYNRQQQQQASAKRAEEQRDKQAQQQAEELREKQAAEQERLKQLEKERLQAQEAAKEQADQQKQAEAAAQKAQEQQKQAEEAAAKSAADAKAKADAQAKQAADAAKKAAADAQKVAEAEAVKKAAADAEKKAQAEAAKKAAADAQKKAEAETAKKAAQEAEKKAAADAAKKAAAAEKAAAEKAAAAEKAAADKKAAAAEKAAADKKAAADKAAAAKAAAAKKAASEKASASDVDDLFGDLSSGKNAPKTGGGAKGSNASPAGSGNTKNNGASGAEINGYASQIKSAIESRFYDASSYAGKTCTLRIKLAPDGMLLDIQSEGGDPALCTAALAAARQAKMPKPPSQAVYEVFKNAPLDFKP
>NZ_CP018628.1|WP_095281284.1|1411218_1411647_+|colicin-uptake-protein-TolR
MARARGRNRRELKSEINIVPLLDVLLVLLLIFMATAPIITQSVEVDLPDATESQAVSSNDDPPVIIEVSGVGQYSVVVEKDRMDQLPPEQVIAEAQRRLESNPKTVFLIGGAKDVPYDEIIKALNLLHSAGVKSVGLMTQPI
>NZ_CP018628.1|WP_095281283.1|1410522_1411215_+|Tol-Pal-system-protein-TolQ
MTDMNILDLFLKASLLVKLIMLILIGFSIASWAIIIQRTRILNAAGREAEAFEDKFWSGIELSRLYQESQGRRENLSGSEQIFYSGFKEFARLHRANNHAPEAVVEGASRAMRISMNRELESLETHIPFLGTVGSISPYIGLFGTVWGIMHAFIALGAVKQATLQMVAPGIAEALIATAIGLFAAIPAVMAYNRLNQRVNKLELNYDNFMEEFTAILHRQAFTSTESNKG
>NZ_CP018628.1|WP_032617092.1|1410121_1410526_+|tol-pal-system-associated-acyl-CoA-thioesterase
MNTTLFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQVLLAERVAFVVRKMTLEYFAPARLDDMLEVQTEITSMRGTSLVFTQRIVNAENTVLNEAEVLIVCVDPLIMKPRALPKSIVAEFKQ
>NZ_CP018628.1|WP_165790670.1|1409690_1409972_+|cyd-operon-protein-YbgE
MKYIYAVMDKRPLRALSLVMALLLAGCIFWDPSRFAAKTSELEIWHGFLIMWAVCAGVIHGVGFRPKAIHWQGIFCPLIADVVLLAGLVFFFS
>NZ_CP018628.1|WP_095281280.1|1409440_1409554_+|cytochrome-bd-I-oxidase-subunit-CydX
MWYFAWILGTLLACAFGVITALALEHIEATKTGEEKH
>NZ_CP018628.1|WP_095281279.1|1408286_1409426_+|cytochrome-d-ubiquinol-oxidase-subunit-II
MIDYEVLRFIWWLLVGILLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEDTRWRNMWDWGIFIGSFVPPLVIGVAFGNLLQGVPFHLDEYMRLYYTGNFFQLLNPFGLLAGVVSVAMIITQGATYLQMRTVGELHLRSRATAQVAALVTLVCFALAGVWVVYGIDGYVVTSAINHAAPSNPLTKEVARQAGAWLVNFNNTPALWAIPALGVLLPLLTVLTSRLEKGAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNLMTYVACVFVPIILLYTSWCYWKMFGRITKEDIESNTHSLY
>NZ_CP018628.1|WP_095281288.1|1416577_1417621_+|quinolinate-synthase-NadA
MSVMFDPEAAIYPFPPKPVPLNRDEKQFYREKIKRLLKERDAVMVAHYYTDPEIQQLAEETGGCISDSLEMARFGAKHPASTLLVAGVRFMGETAKILSPEKTILMPTLNAECSLDLGCPIDEFSAFCDAHPDRTVVVYANTSAAVKARADWVVTSSIAVELIEHLDSLGQKIIWAPDKHLGNYVQKQTGADVLCWQGACIVHDEFKTQALARMKALYPEAAILVHPESPQSVVDMADAVGSTSQLINAAKTLPNQKLIVATDRGIFYKMQQAVPDKELFEAPTAGEGATCRSCAHCPWMAMNGLKAIAEGLESGGAAHEIHVDAALREGALIPLNRMLDFAATLRS
>NZ_CP018628.1|WP_095281289.1|1417658_1418378_+|nicotinamide-riboside-transporter-PnuC
MDFFSTQNILVHIPIGAGGYDLSWIEAIGTLAGLLCIWLASLEKISNYAFGLINVTLFAIIFFQIQLYASLLLQLFFFAANIYGWYAWSRQNSEKEAELQIRWLPLPKAIAWLVACVVAIGLMTVFINPVFGFLTRIAVSVMSSLGLNVTMPELQPDAFPFWDSCMMVLSIAAMILMTRKYVENWLLWVIINVISVVIFALQGVYAMSLEYLLLTFIALNGSRMWINSARQRGSHALSS
>NZ_CP018628.1|WP_095281290.1|1418374_1419313_-|CDF-family-zinc-transporter-ZitB
MAHTHSHSHSSGDENAKRLMLAFGITASFMAIEVVGGLISGSLALLADAGHMLTDAAALLFALIAVQFARRPPNARHTFGWLRLTTLAAFVNAIALVVITVLIVWEAFQRFRHPQPVAGMTMMVIAVAGLLANILAFWILHRGSSEKNLNVRAAALHVLGDLLGSVGAIVAALVIIYTGWTPIDPILSVLVSCLVLRSAWGLLKESVNELLEGAPVSLDIPALKRKMCRDIPEVRDVHHVHVWLVGEKPVMTLHVQVIPPHDHDALLGRIQHFLEHHYEISHATIQMEYQTCNGSDCHLNETQSDHSHHHHH
>NZ_CP018628.1|WP_095281291.1|1419420_1419789_-|hypothetical-protein
MKMTKLATLFLTATLTLASGAALAADSAGSDSNGQANAAAAAGQEAPDAKQNLAPNNVDNNNINTGSGTSGGTMLHPNGTDSGTMNHDGMTKDEVHKNSMCKDGKCPDKSIDSDTKTDGTTQ
>NZ_CP018628.1|WP_095281292.1|1420106_1421159_+|3-deoxy-7-phosphoheptulonate-synthase-AroG
MNYQNDDLRIKEINELLPPVALLEKFPATENAANTVSHARKAIHKILKGNDDRLLVVIGPCSIHDPAAAKEYAARLLTLREELQGELEIVMRVYFEKPRTTVGWKGLINDPHMDNSFQINDGLRIARKLLLEINDSGLPAAGEFLDMITPQYLADLMSWGAIGARTTESQVHRELASGLSCPVGFKNGTDGTMKVAIDAINAAGAPHCFLSVTKWGHSAIVNTSGNGDCHIILRGGKEPNYSAKHVAEVKSGLEKAGLSPNVMIDFSHANSSKQFKKQMEVGADVCQQLVNGEKAVIGVMIESHLVEGNQNLESGEPLVYGKSVTDACIGWEDTDAILRQLANAVKARRA
>NZ_CP018628.1|WP_095281293.1|1421221_1421974_-|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase
MAVTKLVLVRHGESQWNNENRFTGWYDVDLSEKGVSEAKAAGKLLKDEGFSFDFAYTSVLKRAIHTLWNVLDELDQAWLPVEKSWKLNERHYGALQGLNKAETAEKYGDEQVKQWRRGFAVTPPELTKDDERYPGHDPRYAKLTDAELPQTESLALTIDRVVPYWNDTILPRIKSGERVIVAAHGNSLRALVKYLDKMGEDEILELNIPTGVPLVYEFDENFNPIKRYYLGNAEEIAAKAAAVANQGKAK
>NZ_CP018628.1|WP_095281294.1|1422250_1423291_-|galactose-1-epimerase
MLNETPTLAPDGLSYRLLTLRNSAGMVVTVMDWGATLLSARVPMPDGSVRETLLGCASPELYVNQAAYLGASVGRYANRIAKSRFSLEGKEYVLLPSQGENQLHGGPEGFDKRRWQIVQQNDCEVLFALESADGDQGFPGNLSATALFRLTEDNRISIEYRATVDQPCPVNMTNHAYFNLDGEQTDVRNHKLQILADEYLPVDEMGIPFEGLKAVTGTSFDFRSAKTVAQDFLSDDHQRKVKGYDHAFLLQAKGDVTQPAAQVWSADEKLQMNVYTTAPALQFYSGNYLGGTPAREEGDYSDWQGMALESEFLPDSPNHTEWPQPDCVLRPGQEYVSVTEYQFIAR
>NZ_CP018628.1|WP_095281295.1|1423284_1424433_-|galactokinase
MSLKDKTQSLFAEKFGYPATHAIQAPGRVNLIGEHTDYNDGFVLPCAIDYQTVISCAKRNDRKVRVIAADYDNQIDEFSLDAPIVAHDTQQWSNYVRGVVKHLQKRNKNFGGADLVITGNVPQGAGLSSSASLEVAVGTVFQQLYHLPLDGAQIALNGQEAENQFVGCNCGIMDQLISALGKKEHALLIDCRTLGTKAVSLPKGAAVVIINSNFKRTLVGSEYNTRREQCETGARFFQQPKLRDVTLNEFNKVAHELDPIVAKRVRHVLTENARTVEAASALEKGDLKRIGELMAESHASMRDDFEITVPQIDTLVEIVKATIGDKGGVRMTGGGFGGCIVALIPEELVPAVQDAVAKQYEAKTGIKETFYVCKATQGAGQC
>NZ_CP018628.1|WP_095281296.1|1424436_1425483_-|galactose-1-phosphate-uridylyltransferase
MTQFNPVDHPHRRFNPLTGQWILVSPHRAKRPWQGAQETPAKQTLPQHDPDCFLCPGNTRVTGDKNPDYKSTYVFTNDFAALMTDTPDAPESEDPLMRCESARGTSRVICFSPDHSKTLPELSLSALTDVITTWQQQTAELGQEYPWVQVFENKGAAMGCSNPHPHGQVWANSFLPNEVEREDRLQKVYYDENQSALLADYVQREMADGSRTVVETEHWLAVVPYWAAWPFETLLLPKAHVLRITDLSDAQRDDLALALKKLTSRYDNLFQCSFPYSMGWHGAPFNGEENQHWLLHAHFYPPLLRSATVRKFMVGYEMLAETQRDLTAEQAAERLRAVSDVHYRESGV
>NZ_CP018628.1|WP_095281297.1|1425492_1426509_-|UDP-glucose-4-epimerase-GalE
MRVLVTGGSGYIGSHTCVQLLQNGHDVITLDNLCNSKRSVLPVIERLSGKQPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVAKPLEYYDNNVNGTLRLIAAMRAANVKNFIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILADLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVAAMQQLANKPGVHIYNLGAGVGSSVLDVVNAFSKACGKPVAYHFAPRRDGDLPAYWADATKADKELNWRVTRTLDEMAQDTWHWQSRHPQGYPD

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Crispr_ID: NZ_CP018628_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018628_4

2348529-2348606

Orphan

Consensus_repeat	Method
CGCCTTACCCGGCCTACGGGTTCTGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP018628_4

>merge|NZ_CP018628|4|2348529-2348606|CRISPRCasFinder
CGCCTTACCCGGCCTACGGGTTCTGTACGGTCTTTTTGTCGGGTGGCGGCTGCGCCTTACCCGACCTACGGGTTCTGT

>NZ_CP018628|4|3|2348529-2348606|CRISPRCasFinder
CGCCTTACCCGGCCTACGGGTTCTGT	ACGGTCTTTTTGTCGGGTGGCGGCTG
CGCCTTACCCGACCTACGGGTTCTGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018628.1\|WP_095282113.1\|2346564_2347140_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238045
NZ_CP018628.1\|WP_095282109.1\|2341335_2343450_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP018628.1\|WP_095282125.1\|2360289_2360607_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182350
NZ_CP018628.1\|WP_095282108.1\|2340041_2341103_-\|YncE-family-protein	unknown	unknown	gnl\|CDD\|225926
NZ_CP018628.1\|WP_095282122.1\|2358597_2358951_+\|DUF1971-domain-containing-protein	unknown	unknown	gnl\|CDD\|226142
NZ_CP018628.1\|WP_095282121.1\|2358242_2358569_+\|DUF1971-domain-containing-protein	unknown	unknown	gnl\|CDD\|226142
NZ_CP018628.1\|WP_095284281.1\|2344534_2345203_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|183126
NZ_CP018628.1\|WP_095282117.1\|2348682_2350293_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173858
NZ_CP018628.1\|WP_095282114.1\|2347287_2347803_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|224168
NZ_CP018628.1\|WP_095282120.1\|2354904_2357079_+\|virulence-effector-SrfC	unknown	unknown	gnl\|CDD\|226865
NZ_CP018628.1\|WP_095282116.1\|2348255_2348489_-\|DUF2526-family-protein	unknown	unknown	gnl\|CDD\|287680
NZ_CP018628.1\|WP_133159901.1\|2343511_2343859_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018628.1\|WP_095282124.1\|2359620_2360289_+\|SOS-response-associated-peptidase	unknown	unknown	gnl\|CDD\|182162
NZ_CP018628.1\|WP_095282119.1\|2351926_2354908_+\|virulence-factor-SrfB	unknown	unknown	gnl\|CDD\|226864
NZ_CP018628.1\|WP_095282123.1\|2358955_2359138_+\|DUF1869-domain-containing-protein	unknown	unknown	gnl\|CDD\|370209
NZ_CP018628.1\|WP_095282115.1\|2347802_2348252_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|225778
NZ_CP018628.1\|WP_095282112.1\|2345460_2346498_-\|NADP-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225041
NZ_CP018628.1\|WP_095282118.1\|2350575_2351922_+\|ssrAB-activated-protein	unknown	unknown	gnl\|CDD\|236766
NZ_CP018628.1\|WP_095284283.1\|2357818_2357992_-\|GhoT/OrtT-family-toxin	unknown	unknown	gnl\|CDD\|371222
NZ_CP018628.1\|WP_167381247.1\|2343855_2344233_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP018628.1\|WP_095282113.1\|2346564_2347140_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	3.54957e-14
NZ_CP018628.1\|WP_095282109.1\|2341335_2343450_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	8.53044e-77
NZ_CP018628.1\|WP_095282125.1\|2360289_2360607_-\|hypothetical-protein	gnl\|CDD\|182350	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit.	0.000418692
NZ_CP018628.1\|WP_095282108.1\|2340041_2341103_-\|YncE-family-protein	gnl\|CDD\|225926	COG3391, COG3391, Uncharacterized conserved protein [Function unknown].	6.01682e-41
NZ_CP018628.1\|WP_095282122.1\|2358597_2358951_+\|DUF1971-domain-containing-protein	gnl\|CDD\|226142	COG3615, TehB, Uncharacterized protein/domain, possibly involved in tellurite resistance [Inorganic ion transport and metabolism].	3.02941e-42
NZ_CP018628.1\|WP_095282121.1\|2358242_2358569_+\|DUF1971-domain-containing-protein	gnl\|CDD\|226142	COG3615, TehB, Uncharacterized protein/domain, possibly involved in tellurite resistance [Inorganic ion transport and metabolism].	1.03125e-39
NZ_CP018628.1\|WP_095284281.1\|2344534_2345203_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|183126	PRK11414, PRK11414, GntR family transcriptional regulator.	2.92373e-74
NZ_CP018628.1\|WP_095282117.1\|2348682_2350293_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173858	cd08493, PBP2_DppA_like, The substrate-binding component of an ABC-type dipeptide import system contains the type 2 periplasmic binding fold. This family represents the substrate-binding domain of an ATP-binding cassette (ABC)-type dipeptide import system. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NZ_CP018628.1\|WP_095282114.1\|2347287_2347803_+\|N-acetyltransferase	gnl\|CDD\|224168	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane].	1.10739e-77
NZ_CP018628.1\|WP_095282120.1\|2354904_2357079_+\|virulence-effector-SrfC	gnl\|CDD\|226865	COG4458, SrfC, Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown].	0
NZ_CP018628.1\|WP_095282116.1\|2348255_2348489_-\|DUF2526-family-protein	gnl\|CDD\|287680	pfam10735, DUF2526, Protein of unknown function (DUF2526). This family of proteins with unknown function is restricted to Enterobacteriaceae. The family has a highly conserved sequence.	2.26465e-25
NZ_CP018628.1\|WP_095282124.1\|2359620_2360289_+\|SOS-response-associated-peptidase	gnl\|CDD\|182162	PRK09951, PRK09951, hypothetical protein; Provisional.	7.01166e-161
NZ_CP018628.1\|WP_095282119.1\|2351926_2354908_+\|virulence-factor-SrfB	gnl\|CDD\|226864	COG4457, SrfB, Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown].	0
NZ_CP018628.1\|WP_095282123.1\|2358955_2359138_+\|DUF1869-domain-containing-protein	gnl\|CDD\|370209	pfam08956, DUF1869, Domain of unknown function (DUF1869). This domain is found in a set of hypothetical bacterial proteins.	1.74865e-24
NZ_CP018628.1\|WP_095282115.1\|2347802_2348252_+\|DMT-family-transporter	gnl\|CDD\|225778	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown].	8.99833e-30
NZ_CP018628.1\|WP_095282112.1\|2345460_2346498_-\|NADP-dependent-oxidoreductase	gnl\|CDD\|225041	COG2130, COG2130, Putative NADP-dependent oxidoreductases [General function prediction only].	0
NZ_CP018628.1\|WP_095282118.1\|2350575_2351922_+\|ssrAB-activated-protein	gnl\|CDD\|236766	PRK10811, rne, ribonuclease E; Reviewed.	4.24586e-06
NZ_CP018628.1\|WP_095284283.1\|2357818_2357992_-\|GhoT/OrtT-family-toxin	gnl\|CDD\|371222	pfam10753, Toxin_GhoT_OrtT, Toxin GhoT_OrtT. GhoT is part of the GhoT-GhoS type V toxin-antitoxin (TA) system. OrtT is homologous to GhoT, but it is not part of a TA pair. In this case, it acts as an independent toxin to reduce growth during stress related to amino acid and DNA synthesis.	1.84025e-15

>NZ_CP018628.1|WP_095282116.1|2348255_2348489_-|DUF2526-family-protein
MSHLDEVIARVDAAVEESVITHMNELLVELSEDTELTREDRYAQQQRLRNTIAHHGKQHKEEAEARHEHLTQGGSII
>NZ_CP018628.1|WP_095282115.1|2347802_2348252_+|DMT-family-transporter
MNQSLTLVFLVAAGIGLVVQNTLMVRITQSSSTILIAMLLNSLVGIVLFVSILLIKNGVAGFSELASTIRWWTLIPGLLGSFFVFASISGYQYVGAATTIAVLVASQLIGGLVMDIVKSQGIPLRALIGPVCGAVLLVVGAWLVARRQF
>NZ_CP018628.1|WP_095282114.1|2347287_2347803_+|N-acetyltransferase
MMIRHASKEDCAAIGEIYNHAVLHTAAIWNDSTVDTDNRIAWFEARTLMGYPVLVTEENGVVTGYASFGDWRAFDGFRHTVEHSVYVHPDHQGKGIGRELMKKLIVEARAIGKHVMVAGIESQNQVSVHLHETLGFVVTGQMPQVGTKFGRWLDLTFMQLQLDDRNEPDAI
>NZ_CP018628.1|WP_095282113.1|2346564_2347140_-|helix-turn-helix-domain-containing-protein
MNTMPDDMNQRISARIRVERESRGWSLSELAERAGVSRAMIHKIERSESSPTATLLARLSGAFGISMSTLIARAEMQEGKLLRLANQPVWRDPQSHYLRRHVSPRTDLPIDLVQVELPGGSDVPMPASSYALARQLIWLQSGELVFQEGDTRHEMQAGDCLELGPPNDCRFINETQQPCVYLVVRLNQSGS
>NZ_CP018628.1|WP_095282112.1|2345460_2346498_-|NADP-dependent-oxidoreductase
MSQSAKTNRRLVLASRPHGAPVADNFRLEEQPVPTPADGQLLLRTVWLSLDPYMRGRMSDAPSYSPPVDVGAVMVGGTVSRVEQSNHPKFKAGEWVLGYSGWQEYELSDGAGLVKLGEEVENPSWALGVLGMPGFTAYMGLLDIGQPKAGETLVVAAATGPVGATVGQIGKIKGCHVVGIAGGAEKCRHAVDVLGFDQCLDHHADDFAEQLAQACPKGIDVYYENVGGKVFDAVLPLLNTSARVPVCGLVSGYNATSLPDGPDRLPLLMGTLLKKRIRMQGFIISLDYSHRIHEFQEEMGRWIKEGKIQYREQVTDGLENAPQTFIGMLEGKNFGKVVIRVAKDN
>NZ_CP018628.1|WP_095284281.1|2344534_2345203_-|GntR-family-transcriptional-regulator
MLELENLEKAQRLSLTMQVEVSLKGALIAGALKPGARLITKEIADKLGTSITPVREALLRLVSAGALHATPAQAFLVPEITLERYTEISAIRKQLETMAVAAACENMTDNKMLELRDLAEKFHTAMRNGEAQRALHANRAFRFRLYEHAKMPTLTAMIEQLWVRIGPCFNYLYEDVHDITQYSYRYDELLDALERGDVQACDKAIDKLIEGSTALLLQQYFS
>NZ_CP018628.1|WP_167381247.1|2343855_2344233_-|hypothetical-protein
MGPPMSYGIYQYDPSGKQTGGWVLKHNRYLNPFLGSTKDIGLPKITGKSYKDDYFETLLIPNQKTTIEHSLYQGCHVSLSFVPEKQKIYEGHISYADKTGYCVLYMKEVALDTTNGIYVEKDVKQ
>NZ_CP018628.1|WP_133159901.1|2343511_2343859_-|hypothetical-protein
MRAAKALGIVLLVLMSASCASNYDKTGATSLAQYSEKEIKQKITPEVTTRKDVLIAFGVPANTPDYNKVNHWVYTSKIVDRRIYLIIPVILDRKQYLSVDFSDKGIVTAYRYVEE
>NZ_CP018628.1|WP_095282109.1|2341335_2343450_+|TonB-dependent-receptor
MKIISARQATLSLLWMPTIFASASVLAAQEQTMIVSATPQTVSELDTPAAVSVVNGDDMRQAAPRINLSESLGSVPGLQIQNRQNYAQDLQLSMRGFGARSTFGVRGIRMYVDGIPATMPDGQGQTSNIDLSSIDSVEVLRGPFSALYGNASGGVINIASQTGQQPPTIEASSYYGSYGTWRYGMKATGAMGDGTHAGDVDYTVSTTRFTTQGYRDHSGARKNLANAKLGVRIDDASKLTLIFNSVDMKANDPGGLDYQEWRDNPRQSPRADQYNTRKTIKQTQAGLRYERQLTEQDDLSVMMYAGEREMTQYQSIPYQPQLKETHSGGVIDMQRHYQGVDTRWTHRGELLVPVTFTTGLNYENMSEDRRGYENFVMNNGVPEYGVKGDKRRDERNLMWNVDPYLQTSWQLTQKLSLDAGVRYSSVWFDSNDHYVQGTNGDDSGDASYHKWLPASALKYAITDAWNVYAAAGRGFETPTINELSYRSGNQSGLNFGLKPSTNNTYEVGSKTRIGNGLLTAALFRTDTDDEIVVDASSGGRTSYKNAGKTRRQGVELSLDQQFAENWKLKMAWTYLDATYRTNVCSDADCNGNRMPGIARNMGYASFGWQPEEGWYAGSDVRYMSDIMADDENTAKAPSYTVVGLNTGYKFNYGNWGMDVFGRVDNLFDKEYVGSVIVNESNGRYYEPAPGRNYGVGMSVSYRFE
>NZ_CP018628.1|WP_095282108.1|2340041_2341103_-|YncE-family-protein
MSLRHLCSPRLRGSLLLGSLLVAGSFNVHAAEEMLRKAVGKGAYEMAVSQQENALWVATTQSRKTDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINSATQTLWFGNTTNSAVTAIDAKTGDVKGRLVLDDRKRSDTVKPLQPRELVADDTTNTVYITGIGKESVIWVVDGETLKLKETIKDTGTFSTGLALDAQAKRLYSTNADGELITIDTATHKVLSRQKVQDDGKEHFYLNLSLDTKGQRAFLTDSKQPEVLVVNLKDGKVIEKIAAPESLAVLFNQTRNEAYVTHREEGKVSVIDAKTYKVTKTFDTPTFPNSLALSADGKTLYVTVKQKSTRQQEATQPDDVIRIAL
>NZ_CP018628.1|WP_095282117.1|2348682_2350293_-|ABC-transporter-substrate-binding-protein
MSTGKKTGKTLLALALSTLLPASAAWAANTDTIIYCSEASPESFNPQIASSGPSFVASSQVLYNRLINFDPVKNTPVPSLAESWTISPDGKTYTFTLRKGVKFNSNKFFKPTRDFNADDVIFSVLRQKDPKHPYHNVSQGNYEYFNDVGLDKLIQDVKKVDDYHVQFVLTEPNAAFLADWGMDFASILSAEYADVMLKKGTPENVDTWPIGTGPYVLQQYKVDSQIRYLANPNYWDGAVPTKHLIFSITPNVETRLAKLQTNECQIIPAPSPVQFDVIKNNKDLTLHSVDALNVGYLAFNTEKKPFDNVLVRQALNYATDKTAIVNAVFMGSGTVAKSPIPPNMLGYNKDLKDYSYDPEKAKALLKQAGLEKGAEVTLWSMPVQRPYNPNSKRIAEMIQNDWAKVGVKAKIVSYEWGEYLSGMRKGEHDAALFGWMSDNGDPDNFADVLLGCNSIKTGSNAARWCDKGYNDLVQKAKLTSEPAKRAELYGQAQEIFYQQAPWIALANGKTFYATRSNVTGYSVSLMGSDFSKAKLN
>NZ_CP018628.1|WP_095282118.1|2350575_2351922_+|ssrAB-activated-protein
MAKTLLRSGNLDDFQAVGGGGQAVFESALQIREALRLRKQQAIVDCLAIPQVNDGGDRVDWYSPVDGDVSSWNATDEDARFRALHYLENTLSSVESLSKKSLQSPKTAQQLFGSLLSKAFQFPGENFLFLVDGKPVITFWGFVNLNENAREDVLDCLRESLKPEPMPAPVEEPEPEEPAPTIVFEQADAPLVAPPPVVRVTEDDLYSAEPATVRMPEVATPVEPAPAVIGKKRRVPLWSLPVAAVIIAAVAAPLLWPKQAPSAEPTPVSAPAPLAIAPKPVKPAVEMTMNLPLHQAEVLPVKAAEPAPAPVEQAVVITAIPKDAMVMDAVQVKTGSTKFLNGTWRAMLDVKDPITGKPPSLRYQIQNNKGIARVVHGDNVVCRSDIFSGLHSNGELMIKSRGNARCTDGSRYPMPEIACKAGTNDVAECTARYDAKTVVPLTFKKAGA
>NZ_CP018628.1|WP_095282119.1|2351926_2354908_+|virulence-factor-SrfB
MLVNLCDYKQSVTLIANSGVQFLDFGLTPQDSASLGRFVRKTANGPLLRLNYDLVNSRYTLPAGRGGQPEVVKPESTYTLHQSLAVLDGVWFPIPFLRFNPPRTFVDGPDNWARAQVRKLETPDSAGNTHRVTFALDSQIADHATPGLSPVENDILNGTRFALAWRDDEVLSFLDQTWIDGWLREAFTGYATGVENRSERDLHQALRGFEYQAHWLNLMTMLGEQITVPEVKFVTHTLSTPAIPVDLILDVGNTHTCGVIIEDHGDANDGLRQTAELQVRSLSEPQFLNEPLFTSRLEFSEARFGKQHFSVESGREDAFVWPSIVRVGDEARKLAMQRLGTEGNSGISSPRRYLWDETPTVQDWRFSQMNAKTQREPLATAFPLMNLMNDDGQPLFTLPQDERLPVFSPQYSRSTLMTHMLCELLAQALGQINSVATRLRLGFPASPRQLRTLILTLPSAMPKQEREIFRRRMFEAIAIVWKAMGWHPQDEDFASRKQQDKSVIPVPTIQMEWDEASCGQLVWLYNEAISHFGGQTEAFFASLARPDREVEPGAQPGRSLRVASIDIGGGTTDMAITHYQLDDGSGNNVKITPQLLFREGFKVAGDDTLLDVIQRYVLPALQTQLQKSGIADASLLMASLFGDSGRIDTQAVLRQQTALQLFMPIGHAILAAWENSDIDDPLAGLHATFGDLLKQQPTRNVMNYLQQAVDHALPAGSAPFDLFAVPLHVNFHEMQDAMLTGQFTLAAPLHAVCEAISHYACDILLITGRPGCLPGVQALIRHLQPVPVNRIVWLDKYRVHEWYPFSQQGRIGNPKSTAAVGAMLCSLALDLRLPRFNFKAADIGAYSTVRYLGVLDNTVNTLREENVWYQDIDLDKPGAKLDAKLHFPLRGNVTLGFRQLANTRWPATPLYTLSINSAELAKSIAGDGVLNVRLQLRGGTKHEGPESFELSDAWLQDGTPVPPDALTFKLNTLADRRHSGSHYWIDSGSVYLK
>NZ_CP018628.1|WP_095282120.1|2354904_2357079_+|virulence-effector-SrfC
MTAMTATTQALIEWINETRLHAPMLDNDADALLAQLTCAQARGQAIDRALSGRSSIGLYGHSQAAKAHLLASLCGSGNSRLDVSPGQRTFDYFSHINPGHALTNMAVRFTPRASDVSDDAFPLRLSLVTEAELVQLFIARTTLHTLIRPVEKSVIESRVEKWRALRQPQAVPGITAQEVATIGRYWRSAVPGFEQQMDDVLWHQFAQLIPSLDLSTRASVWSLLWGEQQEITQQWLKLAHVLHQTSHARELAAPLSLLVDNFGLPSEGFLTRAEFTAPDAQEAVLHPLNDGEMLNAISIPVDVLAFLTRELVLPAENGVLDSVDIIDIPAPSDANLSPLAEAKCTWLLEHYRQQMQPDVLVICNATARHEQTAKTAKTLLNWVKETQTAEESALPGLVWAITPHDARFHTKQNLDEAVQHLLGKPGQRWGTLQALDTHSMQRVVEWLSQATLSTQRQSRLLALKTAQQRELHALMQSYLAPIAVEPGTQRTQAEAMVRSLQSSAARHGELLEGLLPPLKAFETLLAVQQPREEQVNGLFTDVIDLFADNTSDGHETFHTKDKARLAHRVWLNHLRQWSRNDATAHRLGLDISVLPQIADALAISSYRLNLPQQLQRIVEADKSSAAQLHAAIGNFIGWLGYAETPVASRPASRVRKGQAIFVTPVVSSTTPRLTRLGEQPVHAATVYVYDWLVALYTRAIENMGFQHPHDIQPAARQALQTILR
>NZ_CP018628.1|WP_095284283.1|2357818_2357992_-|GhoT/OrtT-family-toxin
MTLYQKMLVFYAVMAAICALITWFLSKDRKRIRFLSAFLVGSTWPMSFPVALLISLF
>NZ_CP018628.1|WP_095282121.1|2358242_2358569_+|DUF1971-domain-containing-protein
MLRIPSSCIHTRSTPFWNKDTAPAGIFQRHLDRGTRPGVYPRLSVSQGAIRYLGYADEFTPEPDSELIIEAGHFGVFPPEKWHHIETMTDDTVFNVDFFVEPEVLKSL
>NZ_CP018628.1|WP_095282122.1|2358597_2358951_+|DUF1971-domain-containing-protein
MLRIPENFVHTRATPFWNKDSAPKALFTHHNTKAGVYGRLSVMQGAVKYLGFPDADATEPDLELIIEAGSFGISPPQKWHRIELLTDDTYFSIDFFADPQATLEGAGLGRVVNTHKE
>NZ_CP018628.1|WP_095282123.1|2358955_2359138_+|DUF1869-domain-containing-protein
MGKATYTVTVTNNSNGVSVDYETQAPMELLIPDVAADVVKDLVNTVRAYDTENEHDVCGW
>NZ_CP018628.1|WP_095282124.1|2359620_2360289_+|SOS-response-associated-peptidase
MCGRFSQSMTRDDYLALLADEADRDIPYDPEPIGRYNVAPGTKVLLLSERDEQLHLDPVLWSYAPGWWDKAPLINARVETAATSRMFKPLWQHGRAICFADGWFEWKREGDKKQPYFIHHADGQPIFMAAIGSTPFERGDEAEGFLIVTSAADKGLVDIHDRRPLVLLPEAAREWMRQDIGGKEAEEIVADGVVPADKFIWHAVTRAVGNVKNQGPEMIAEI
>NZ_CP018628.1|WP_095282125.1|2360289_2360607_-|hypothetical-protein
MGFPSPATDYVEDRLTINKLCDIDMNCRVIETNCGWAVINISLKPESGGVVLATYDGRNHFVRLMGSALITEDGDAIEGEALNDVVVHGVVTHTINRMREDSGVV

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Crispr_ID: NZ_CP018628_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018628_5

2557833-2558017

Orphan

Consensus_repeat	Method
TCTCGCTCTGATGCCCGGAGCCAATCAAAATGTCGGCTGGCGGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP018628_5

>merge|NZ_CP018628|5|2557833-2558017|CRISPRCasFinder
TCTCGCTCTGATGCCCGGAGCCAATCAAAATGTCGGCTGGCGGCTGCGCCTTACCCGGCCTACAAATACGTCTCGCTCTGATGCCCGGAGCCAATCAAAATGTCGGGTGGCGGCTACGCCTTACCCGGCCTACAAATACATCTCGCTCTGATGCCCGGAGCCAATCAAAATGTCGGGTGGCGGCT

>NZ_CP018628|5|4|2557833-2558017|CRISPRCasFinder
TCTCGCTCTGATGCCCGGAGCCAATCAAAATGTCGGCTGGCGGCT	GCGCCTTACCCGGCCTACAAATACGTCTCGCTCTGATGCCCGGAGCCAATCAAAATGTCGGGTGGCGGCTACGCCTTACCCGGCCTACAAATACA
TCTCGCTCTGATGCCCGGAGCCAATCAAAATGTCGGGTGGCGGCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018628.1\|WP_095284301.1\|2548054_2548534_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238357
NZ_CP018628.1\|WP_095282318.1\|2562109_2563789_+\|alpha,alpha-trehalase	unknown	unknown	gnl\|CDD\|237326
NZ_CP018628.1\|WP_095282321.1\|2566610_2567342_+\|flagellar-brake-protein	unknown	unknown	gnl\|CDD\|227868
NZ_CP018628.1\|WP_095282308.1\|2550384_2550744_-\|IacB-protein	unknown	unknown	unknown
NZ_CP018628.1\|WP_095282311.1\|2553451_2553925_-\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224759
NZ_CP018628.1\|WP_095282314.1\|2556774_2557785_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223135
NZ_CP018628.1\|WP_095282322.1\|2567379_2567991_-\|membrane-bound-lytic-murein-transglycosylase-EmtA	unknown	unknown	gnl\|CDD\|185367
NZ_CP018628.1\|WP_095282316.1\|2559385_2560342_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378976
NZ_CP018628.1\|WP_095282320.1\|2566147_2566402_-\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	unknown	unknown	gnl\|CDD\|182475
NZ_CP018628.1\|WP_095282324.1\|2569103_2570837_+\|potassium/proton-antiporter	unknown	unknown	gnl\|CDD\|225802
NZ_CP018628.1\|WP_095282317.1\|2560352_2561735_-\|carbohydrate-porin	unknown	unknown	gnl\|CDD\|374908
NZ_CP018628.1\|WP_095282309.1\|2550767_2551895_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173848
NZ_CP018628.1\|WP_095282313.1\|2555714_2556695_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|227311
NZ_CP018628.1\|WP_095282310.1\|2551993_2553118_-\|amidase	unknown	unknown	gnl\|CDD\|223232
NZ_CP018628.1\|WP_095282312.1\|2554294_2555683_+\|4-hydroxyphenylacetate-permease	unknown	unknown	gnl\|CDD\|131385
NZ_CP018628.1\|WP_095282306.1\|2548533_2549847_-\|aromatic-ring-hydroxylating-dioxygenase-subunit-alpha	unknown	unknown	gnl\|CDD\|176888
NZ_CP018628.1\|WP_095282315.1\|2558081_2559269_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|182309
NZ_CP018628.1\|WP_095282323.1\|2568091_2569006_+\|muramoyltetrapeptide-carboxypeptidase	unknown	unknown	gnl\|CDD\|183059
NZ_CP018628.1\|WP_095282307.1\|2549843_2550380_-\|SnoaL-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|379275
NZ_CP018628.1\|WP_095282319.1\|2563932_2566035_-\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|236643

Protein	Function_ID	Function_description	E-value
NZ_CP018628.1\|WP_095284301.1\|2548054_2548534_-\|hypothetical-protein	gnl\|CDD\|238357	cd00667, ring_hydroxylating_dioxygenases_beta, Ring hydroxylating dioxygenase beta subunit. This subunit has a similar structure to NTF-2, Ketosteroid isomerase and scytalone dehydratase.The degradation of aromatic compounds by aerobic bacteria frequently begins with the dihydroxylation of the substrate by nonheme iron-containing dioxygenases. These enzymes consist of two or three soluble proteins that interact to form an electron-transport chain that transfers electrons from reduced nucleotides (NADH) via flavin and [2Fe-2S] redox centers to a terminal dioxygenase. Aromatic-ring-hydroxylating dioxygenases oxidize aromatic hydrocarbons and related compounds to cis-arene diols. These enzymes utilize a mononuclear non-heme iron center to catalyze the addition of dioxygen to their respective substrates. The active site of these enzymes however is in the alpha sub-unit. No functional role has been attributed to the beta sub-unit except for a structural role.	5.0778e-22
NZ_CP018628.1\|WP_095282318.1\|2562109_2563789_+\|alpha,alpha-trehalase	gnl\|CDD\|237326	PRK13271, treA, alpha,alpha-trehalase TreA.	0
NZ_CP018628.1\|WP_095282321.1\|2566610_2567342_+\|flagellar-brake-protein	gnl\|CDD\|227868	COG5581, COG5581, c-di-GMP-binding protein [Signal transduction mechanisms].	7.68659e-83
NZ_CP018628.1\|WP_095282313.1\|2555714_2556695_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	5.32934e-81
NZ_CP018628.1\|WP_095282311.1\|2553451_2553925_-\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224759	COG1846, MarR, Transcriptional regulators [Transcription].	5.94842e-15
NZ_CP018628.1\|WP_095282314.1\|2556774_2557785_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	8.13413e-172
NZ_CP018628.1\|WP_095282322.1\|2567379_2567991_-\|membrane-bound-lytic-murein-transglycosylase-EmtA	gnl\|CDD\|185367	PRK15470, emtA, membrane-bound lytic murein transglycosylase EmtA.	9.33831e-144
NZ_CP018628.1\|WP_095282316.1\|2559385_2560342_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|378976	pfam12852, Cupin_6, Cupin. This is a family of bacterial and eukaryotic proteins that belong to the Cupin superfamily. Some of the proteins in this family are annotated as being members of the AraC family of transcription factors, in which case this domain corresponds to the ligand binding domain.	2.07011e-33
NZ_CP018628.1\|WP_095282320.1\|2566147_2566402_-\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	gnl\|CDD\|182475	PRK10457, PRK10457, hypothetical protein; Provisional.	3.93458e-21
NZ_CP018628.1\|WP_095282324.1\|2569103_2570837_+\|potassium/proton-antiporter	gnl\|CDD\|225802	COG3263, COG3263, NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism].	0
NZ_CP018628.1\|WP_095282309.1\|2550767_2551895_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|173848	cd01159, NcnH, Naphthocyclinone hydroxylase. Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.	2.23123e-93
NZ_CP018628.1\|WP_095282317.1\|2560352_2561735_-\|carbohydrate-porin	gnl\|CDD\|374908	pfam16966, Porin_8, Porin-like glycoporin RafY. This is a family of Gram-negative Gammaproteobacteria putative raffinose-like porins.	0
NZ_CP018628.1\|WP_095282310.1\|2551993_2553118_-\|amidase	gnl\|CDD\|223232	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis].	2.18961e-74
NZ_CP018628.1\|WP_095282312.1\|2554294_2555683_+\|4-hydroxyphenylacetate-permease	gnl\|CDD\|131385	TIGR02332, putative_4-hydroxyphenylacetate_permease, 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. ( as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.	0
NZ_CP018628.1\|WP_095282306.1\|2548533_2549847_-\|aromatic-ring-hydroxylating-dioxygenase-subunit-alpha	gnl\|CDD\|176888	cd08879, RHO_alpha_C_AntDO-like, C-terminal catalytic domain of the oxygenase alpha subunit of Pseudomonas resinovorans strain CA10 anthranilate 1,2-dioxygenase and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of anthranilate 1,2-dioxygenase (AntDO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-like 2Fe-2S cluster, and the C-terminal catalytic domain which binds the non-heme Fe(II). The Fe(II) is co-ordinated by conserved His and Asp residues. Oxygenases belonging to this subgroup include the alpha subunits of AntDO, aniline dioxygenase, Acinetobacter calcoaceticus benzoate 1,2-dioxygenase, 2-halobenzoate 1,2-dioxygenase from Pseudomonas cepacia 2CBS, 2,4,5-trichlorophenoxyacetic acid oxygenase from Pseudomonas cepacia AC1100, 2,4-dichlorophenoxyacetic acid oxygenase from Bradyrhizobium sp. strain HW13, p-cumate 2,3-dioxygenase, 2-halobenzoate 1,2-dioxygenase form Pseudomonas cepacia 2CBS, and Pseudomonas putida IacC, which may be involved in the catabolism of the plant hormone indole 3-acetic acid. This subfamily belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket.	1.89079e-88
NZ_CP018628.1\|WP_095282315.1\|2558081_2559269_-\|MFS-transporter	gnl\|CDD\|182309	PRK10213, nepI, purine ribonucleoside efflux pump NepI.	8.74576e-102
NZ_CP018628.1\|WP_095282323.1\|2568091_2569006_+\|muramoyltetrapeptide-carboxypeptidase	gnl\|CDD\|183059	PRK11253, ldcA, L,D-carboxypeptidase A; Provisional.	0
NZ_CP018628.1\|WP_095282307.1\|2549843_2550380_-\|SnoaL-like-domain-containing-protein	gnl\|CDD\|379275	pfam13577, SnoaL_4, SnoaL-like domain. This family contains a large number of proteins that share the SnoaL fold.	4.6118e-09
NZ_CP018628.1\|WP_095282319.1\|2563932_2566035_-\|TonB-dependent-siderophore-receptor	gnl\|CDD\|236643	PRK10044, PRK10044, ferrichrome outer membrane transporter; Provisional.	1.55802e-126

>NZ_CP018628.1|WP_095282314.1|2556774_2557785_+|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MVKIGINGFGRIGRNFLRAALGNADIQIVAINDLTDSKTLAHLLKYDSLLGTLSASVEAGDHYLQVDGNQITVFSERDPANIPWRSVGVDIVIEATGFFTDREKAAVHIEKGGAKRVIISAPGKNDDLTVVMGVNDGLYDPAQHFVVSNGSCTTNGLAPAAQVLHQHFGIEHGLMNTTHAYTNSQALHDQPEKDLRGARAAALSIVPYSSGAAKALGKVIPELDGRLTGYSLRVPVPVVSIVDLTVTLSREVTVEAVNNAFREAASAGPLKGILGYSDEPLVSSDYQGDPRSSIIDGLSTLVIGGNMVKILAWYDNEWGFSNRLVDLAVLMERKGL
>NZ_CP018628.1|WP_095282313.1|2555714_2556695_+|helix-turn-helix-domain-containing-protein
MKKILIIVPDGGMLFEAAGIADILMQANQLHTEGLAQPRYRIIIATTQPHQVIHGQSGLNLLADYRLPELDPREPLDTIIITGRGMNELESTAVVDWLHLAAPHARRIASICGGAMLLAQSGLLDGRRATTHWRLLDTMQKTWPKIKVEGGPLYIQDGHIWTSGGVSSGFDLTLALVEEDYGFTLARDVAQDLVMYLRRPGGQLQFSRYNLRQSSSSGPVSELQAWILNNITADLCVEKLAEQAAMSPRNFTRVFTRETGASPARYVMEARLAAARQLLEQTSEPLERIAEQSGFGSSINLRRVFEKQLHLTPGEYRQRFHCRKMA
>NZ_CP018628.1|WP_095282312.1|2554294_2555683_+|4-hydroxyphenylacetate-permease
MNERSSVEQTRPPSSAPDALDPRQQAVIKKLFRRLIVFLFILFVFSYLDRINIGFAGLTMGKDLGLTSTMFGLATTLFYVMYVICGIPSNIMLSIVGARRWIAVLMVIWGIASTATMFATGPNSLYVLRMLVGIAEAGFLPGLLLYLTFWFPAHYRARANALFMIAMPVTMALGSLASGFILNMDGLLNLKGWQWLFLLEGFPSVLLGLVVWFWLDDSPAKAKWLTEDDKACLNEMLEADKIAASKVQTAANVGLIPQRSVARELFTPIIILYTVAYFCLTNTLSALSVWTPLILRSFNETSSNVTIGLLSAIPQVCTIVAMVWWSKRSDRLNERKIHTLLPYLFAAAGWMLTASSTHPLLQFTGIVMASAGAFAAMVIFWTTPDRFISLRARAVGIAVINATGMTGAALGPLLMGWMKDVTGNFNAGIFMVAGFLVLGALIIALIPMTKTVAQKAAAPLST
>NZ_CP018628.1|WP_095282311.1|2553451_2553925_-|winged-helix-turn-helix-transcriptional-regulator
MTTTKNTPDGTPDDPSFHREEFPFYWIVNVYARYTQIMEITLKKAQLDVSRFRVLMVTHQYGKASISQISEYAMAKMPTITKIVGRLRDDGLVTTASSEQDARVTEVMLTDAGRKKVEEAYALTQKVFEKGFKGMSVSQVDKMNLSLAKVLDNLNEL
>NZ_CP018628.1|WP_095282310.1|2551993_2553118_-|amidase
MKPVYESNGYVEQFVLGKGDLRFAVKDTLDIAGHQTRAGCPALEHNPVAPQHASVVAALLAQNCQLTGKTTLHELAFGVTGINPWSGTPVNPRYPALIPGGSSSGSAAVVASGEVDFSLGTDTGGSVRMPAACCGILGFKPGYGVLSRHGVMPAQSSLDCVGIFASDAAVLRQAMTRLGVPVGEPLNALPAMSFIPAASAEIDAILLRFLEQQGIAPQKAELPNLDDAHRAGLTLISHENWQAFSPLLASNKVSPDVASRIRAGADVSANALDSAEQIRIHFTAQVDAMLAKNPLLALATLPELPPTLEEAADPLSVVNLTRLVRPFNLSGHPAITLTVGDLHGRPVSLQLVAAKGQDGLLVQAVEWLTGRRKP
>NZ_CP018628.1|WP_095282309.1|2550767_2551895_-|acyl-CoA-dehydrogenase
MSAIQVREELVPLLSDVAARSHEFEHQRHISDDIIARFRQAGVYRALVPKMYGGDECSPAQFCELIEQISTADGSAGWVASFGMSPFYLGALPPDTLQELYRDGPDVVFAGGIFPTQKAIQADGGYRVSGRWSFASGSMGASVLGVGILPDSEQALPRMAVLPRASVQIDPVWDTVGLAGTGSHDLLVNDAFVPHEWTFIRGGALNLEGPLYRYPVLSLATQVLSVVALGVARAALNEIYAIAHRQQSVTGAPRLADRQQAQMQIARCEAELRSARAWFYEAIDDVWQCLLAGNEASCEQINALRLSSTHVTRVAADVARQALALNGMGGVTMTSPLQRFVRDTMVITQHAFMGDLSYLNAGTVFFGGKPLPGYL
>NZ_CP018628.1|WP_095282308.1|2550384_2550744_-|IacB-protein
MSQSKTLRVLFCIGVNQNFFDASPAEAKQVWAAFGVMMKGIEETQGIRVIGNMDDDQLMVGPSTTAPWTTYVLADAEHLDNVAAVCNLFRTTPVGESGSKLWKFCKIEARVGRELIIQG
>NZ_CP018628.1|WP_095282307.1|2549843_2550380_-|SnoaL-like-domain-containing-protein
MNAQDALRLQQLEDSQAARVCISDYMRLCDQLDSHETVQAIGALFTTDACWEGLGEPYATRLGKHQGREAIVAMMASYVRRPAHFALNAHFLCSEALGHTADGELRGRWLMLQTSEFTAGGAHLNAAEICVTFMRDANGMAMRHFTTRNLFSRPVDRWHAADELPVPDKNENVQENQT
>NZ_CP018628.1|WP_095282306.1|2548533_2549847_-|aromatic-ring-hydroxylating-dioxygenase-subunit-alpha
MNCDHLIAIKNIDTSPQAVPSAAEIAALVQSDRVHTSLYTSDDLFQLELDRIFSKTWVWVAHASEIPDTGSFKTTELGTQPVIVVRDRKGTVHTLLNRCRHRAATVCEHRSGKTNSFVCPYHGWGYALDGSLRGVPHPESYADQLEKGELGLVSLRTEQYAGMIFATFNDQIEPLEDFLGAAKKWMDLFMKQGAGYPIKTGPAHRFRFPGNWKIQLENTTDGYHFPVVHRSFLSSVDKQTEEMLNFVDGSGYVEDLGNGHSVMVMIPELVDLDANLDAPIPERFEALAEALRAEHDEQQVRRIVRAVGGSGFNLNIFPNIACSMAFFRVLQPVSVNETEIHHAVITMDGGPEIANQARLRLHEHFQGPMGFGTPDDSEAWERVQRGATAGDDLWIMLNRGLAGEYRTDDGLRSDVSAETGMRAAYQQWKKLMTESEQ
>NZ_CP018628.1|WP_095284301.1|2548054_2548534_-|hypothetical-protein
MTPESELFAAVTLINLEGDLLDQGEFNAWLDLWQHDGLYVVPIDPNETDFKNTLNYACDDHHMREKRVHRLYSGESISTTPRARTLRTLSRFRLLESSDSLIVVRGAQSLWEHRKGHSRHYAADITWQLQREGERLRIQQKVIRLVNSDDVLHSIGYIL
>NZ_CP018628.1|WP_095282315.1|2558081_2559269_-|MFS-transporter
MNSSIAASEAIAPAKPAWRAVYSLGLGVFGLITAEFLPASLLTPMAASLGVSEGMAGQAVTATALVALVTGLLITSATKSIDRRWVLMFFSVLQIISSLLVAFAPNLQVLLMGRLLLGIAIGGFWAMSTATAMRLVPADKVPKALAIIFSSVSIATVVAAPLGSYLGSLIGWRNVFILCILPSIVALLWQLWVLPSMKPESSGSLGTLLRVLRRPGMIGGLLATVLIFSGHFAFFTYLRPFLETVGQASVESISLILLGFGLANFVGTSIAGHLLARNLRLTLALVPFAMGVLALMMVAFGHLAMLDGLLVALWGFAFGLVPVGWSTWLATTVPDEAESAGGLLVASIQFAIGAGAAGGGAIFDLNGASGVFAGSGLLLVSAMVIVLMGVRVKAA
>NZ_CP018628.1|WP_095282316.1|2559385_2560342_+|AraC-family-transcriptional-regulator
MPVQSPDLISELLRGMRLSGVKYRRIEASAPFGVAFSQAPGKAQFHFVSHGSAVLRMESGATFHLNSGDALFIPNGNAHALLSDENASVTPIQAFPSEPICNSVCAITCEPCPESEHTVIFSGCMDFELGGMQPLIKAMPEVMMVSRLMSTWPEIHPLLAAMERESMTRQVGFAGILARLADVVAALIVRGWVEAGCGKATGWVQVLRDPRLSRAIYAMHQQPGVNWSVAELAKEAGTSRSVFAERFLSATGTTPAKYLSELRMRLAIQYIRHEHQAIETVALRLGYGSLAAFSRAFKRIVGHAPGTLRETSQTPEEV
>NZ_CP018628.1|WP_095282317.1|2560352_2561735_-|carbohydrate-porin
MRIKFIALAVSTLCFGGAYAAHNTPSLEDKLAQLEARLEKAENRAEKAEAQIEQLQQHQTLAAKSQPSVTVESAEPVTASALPKLTLSGYGDIKMYGDVEFNMDAASRTGALTSIKTSANKDWASGNNERWDINGRILLGFDGYRRMDGGNFAGFSVQPLADLGGKMNLDDAIFFFGNENNWKVKVGRFEAYDMFPLNQDTFIEYSGNTANDLYSDGYGYIYMMKEGRGRSDSGGNFLMSKTLDNWYFEVNTLLENGSTLFVDKQYHGVDLDNDKNVAYVRPVISWQSGRLSTAVAMESNLVNNAYGYRDASGQWVDQSDRTGYGFTLTWNGQKTDPENGVVVNLNTAYMDATDETDFTAGTNALWHNVELGYIYAHNEVDKFNSANVFDNCDDDCWITDPGDYDIHTIHASYLIPNVMKMKNFNIYLGAYASWVEAHPNDGDGNNDDRYGGRVRFKYYF
>NZ_CP018628.1|WP_095282318.1|2562109_2563789_+|alpha,alpha-trehalase
MTRPEIRPLALRVALGGALMSVAALSFADTLPPMQKQSPDILLGPLFSDVQSAKLFPDQKTFADAVPKSDPLMILADYRMQHQQRGFDLRHFVDMNFTLPAEGEKYVPPAGQNLREHIDGLWPVLTRTTDKADKWDSLLPLPKPYVVPGGRFREVYYWDSYFTMLGLAESDHWDKISDMVANFGYELDNFGHIPNGNRSYYLSRSQPPFFALMVELLATHDKDALKTYLPQMEKEYTYWMEGVETLQPGQANKRVVKLDDGSVLNRYWDDRDTPRPESWLDDVTTAKNNPNRPATEIYRDLRSAAASGWDFSSRWMDDPQKLGTIRTTSIVPVDLNTLLFKMEKLLAKASQEAGDTERANRYETLANARQKAIESHLWNEKEGWYADYDLKSKKVRNQLTAAALFPLYVNVASKERADKVARATASRLLKPGGVSTTTINSGQQWDAPNGWAPLQWVAAEGLQNYGHKKVAMDVTWRFLTNVQHTYDREQKLVEKYDVSTTGTGGGGGEYPLQDGFGWTNGVTLKMLDLVCPKEKPCDSLPATQPAANDDVAPQKSAAQ
>NZ_CP018628.1|WP_095282319.1|2563932_2566035_-|TonB-dependent-siderophore-receptor
MNTSRFAVCALAGAVTLALQTCAFAEESTLVVTGAEQDSLLPEWTNSATKSAVAESKTPQVINTISATEIEQRHASSVNEILRYAPGVSTEVRGNTSYMSEYKIRGFTVEQEYYNGLQLPYNVTGNTKARIDPLLIESVDILKGPASVLYGGGSPGGLVNIQGKKPQKAAKTEVGFNTGTRNLKEGTLDSTGQIADSDWNYRLLGKATEGDDQPHTTRTENYLVAPSVTWQPDNKTRLTIDALAQNSPSLTPSNPLPLSYLRSKYADRRDYAGDEWSGFKQRQWMLGYSFEHQFDSGWGFNQKARYFDVDTHQRSIYSTGPGAQVYELNRFAYTTDEDLQSVNIDNQVTKTLELGDWKHHLLAGFDYQKLNSHFHYRYASNTPGIDMRDPDYSQVNDGSLGLYTAQKNRLSYQQNGYYLQDQIEFGGLNLLGSLRYDDYRSVTTDYLQNGDKAWVSQDRVTKRLGALYAFENGISPFISYSEGFAPVSPQGTLTAKDVKPTTSKQVEGGVKYLLEEYATTFTASVFNIRQKNVVTTDPGFLNYRQTGEVESKGAELSAISRPTDNLTLIANYAYTHAINTEDEKYKGKRPTQVPENAFNLWGDYTFDSTPLKGLNLGAGARYTGPMEIAPTNDRGKLGGTTQYDLAASYQMGEIMPSLAGLTLKASAQNITNKETFTCYDATNCWIGRDRTVQVGASYSF
>NZ_CP018628.1|WP_095282320.1|2566147_2566402_-|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein
MGIIAWIVFGLIAGVIAKFIMPGRDGGGFILTCVLGVVGAVVGGWLATMFGVGGSVSGFNLHSFLVAVVGAIVVLAIFRLLRRA
>NZ_CP018628.1|WP_095282321.1|2566610_2567342_+|flagellar-brake-protein
MSNYSEQFLKQNPLAVLGVLRDLHKGEVPLRISWATNQFISKILEATPERLVIDFGSQEYENRAILRAKNISVMAETKGAKVEFVLPLVEQGDYLDLPAFITPLPDSLWFVQRREYFRINAPMHPSYFCKAKMPDKKEIRFRLFDLSLGGMGALMDTPRPDGLVEGMRFSQIELDMGGWGRFYFDAQLIAISERKVVDSKNETITTPRLSFRFLNVGPGAERELQRIIFSLEREARERANKVL
>NZ_CP018628.1|WP_095282322.1|2567379_2567991_-|membrane-bound-lytic-murein-transglycosylase-EmtA
MKLRWFAFLMVLLAGCSSKQDYQNPPWNPEVPVKRAMQWMPISEQAGKAWGVSPRLVTAIIAVESGGNPTLVSKSNAVGLMQLKASTAGAEVYRYMGWKGQPSTSELKNPERNISMGTAYLSILEHGILKGIEDPEVMQYALVVSYVNGAGALLRTFSSDRKKAIKEINGMDKDEFFDHVVNNHPAPQAPRYIWKVQKAMDAM
>NZ_CP018628.1|WP_095282323.1|2568091_2569006_+|muramoyltetrapeptide-carboxypeptidase
MSQFHLVAPSGYCINQDAARLGVQRLEASGHRVANQTIIPRRLQRFAGTEQQRVADINDLVTLEGKNQIILAVRGGYGASRLLETIDWDGLARRQQKDPLLLCGHSDFTVIQLGLLALHNVITFSGPMLAGNFGAPELNAFTQEHFWRALQNPRFNVEWQGNGPACETKGQLWGGNLAMLVSLIGTPWLPQIENGILVLEDINEHPFRVERMLLQLMHAGILSRQRAIILGSFSGATPNDYDAGYTLETMIDYLRTRVDIPVISGLAFGHEQQTVTLPLGAQAILKHNEAGTVLTISGHPIISA
>NZ_CP018628.1|WP_095282324.1|2569103_2570837_+|potassium/proton-antiporter
MDAAAIISLFILGSVLVTCSILLSSFSSRLGIPILVIFLAIGMLAGIDGIGGIPFDNYPFAYMVSNLALAVILLDGGMRTQASSFRVALGPALSLATVGVLITSGLTGMMAAWLFHLNIMEGLLIGAIVGSTDAAAVFSLLGGKGLNERVGSTLEIESGSNDPMAVFLTITLIEMIQAHETGLSWMFAWHILQQFGLGIVIGLSGGYLLQQMINRISLPAGLYPLLALSGGILIFALTTAMDGSGILAVYLCGFLLGNRPIRNRHAILQNFDGLAWLAQIGMFLVLGLLVTPSDLLPIAIPALILSAWMIFFARPLSVFAGLLPFRGFNLRERIFISWVGLRGAVPIILAVFPMMAGLDNSRLFFNVAFFVVLVSLLFQGTSLGWAAKKAKVVVPPVGLPVSRVGLDIHPENPWEQFVYQLSADKWCVGASLRDLHMPTETRIAALFRDNALLHPTGSTRLREGDILCVIGRETDLPALGKLFSQSPPVALDQRFFGDFILEANAKFADVALIYGLDEGLEYRDKQQTLGEIVQQLLGAAPVVGDQVEFAGMIWTVAEKEDNAVRKVGVRPMEDEPE

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Crispr_ID: NZ_CP018628_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018628_6

3144481-3144617

Orphan

Consensus_repeat	Method
CGTTTTGCTTTTACCTTGTGCGGTTGGATGCTCTCACCCCGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP018628_6

>merge|NZ_CP018628|6|3144481-3144617|CRISPRCasFinder
CGTTTTGCTTTTACCTTGTGCGGTTGGATGCTCTCACCCCGGCGCTCTCCCACGGGAGAGGGAGAAAACACTAAAAACGACAACCAAAGGTTGTCGTTTTGCTTTTACCTTGTGCGGTTGGATGCCCTCACCCCGGC

>NZ_CP018628|6|5|3144481-3144617|CRISPRCasFinder
CGTTTTGCTTTTACCTTGTGCGGTTGGATGCTCTCACCCCGGC	GCTCTCCCACGGGAGAGGGAGAAAACACTAAAAACGACAACCAAAGGTTGT
CGTTTTGCTTTTACCTTGTGCGGTTGGATGCCCTCACCCCGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018628.1\|WP_095282792.1\|3145543_3146353_-\|TSUP-family-transporter	unknown	unknown	gnl\|CDD\|182593
NZ_CP018628.1\|WP_095282796.1\|3149416_3149968_+\|endonuclease-SmrB	unknown	unknown	gnl\|CDD\|235321
NZ_CP018628.1\|WP_095282789.1\|3142342_3144415_+\|bifunctional-tRNA-(5-methylaminomethyl-2-thiouridine)(34)-methyltransferase-MnmD/FAD-dependent-5-carboxymethylaminomethyl-2-thiouridine(34)-oxidoreductase-MnmC	unknown	unknown	gnl\|CDD\|234978
NZ_CP018628.1\|WP_095282798.1\|3150709_3152857_-\|fatty-acid-oxidation-complex-subunit-alpha-FadJ	unknown	unknown	gnl\|CDD\|236864
NZ_CP018628.1\|WP_095282788.1\|3141027_3142245_-\|beta-ketoacyl-ACP-synthase-I	unknown	unknown	gnl\|CDD\|181184
NZ_CP018628.1\|WP_095282783.1\|3135415_3136228_-\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|234577
NZ_CP018628.1\|WP_095282799.1\|3152856_3154167_-\|acetyl-CoA-C-acyltransferase-FadI	unknown	unknown	gnl\|CDD\|181597
NZ_CP018628.1\|WP_095282781.1\|3133667_3134573_-\|acetyl-CoA-carboxylase,-carboxyltransferase-subunit-beta	unknown	unknown	gnl\|CDD\|235547
NZ_CP018628.1\|WP_095282785.1\|3137308_3138445_-\|4-phosphoerythronate-dehydrogenase-PdxB	unknown	unknown	gnl\|CDD\|185335
NZ_CP018628.1\|WP_095282786.1\|3138562_3139567_+\|flagella-biosynthesis-regulator-Flk	unknown	unknown	gnl\|CDD\|182670
NZ_CP018628.1\|WP_095282795.1\|3148326_3149259_-\|50S-ribosomal-protein-L3-N(5)-glutamine-methyltransferase	unknown	unknown	gnl\|CDD\|236988
NZ_CP018628.1\|WP_095282794.1\|3147179_3148265_-\|chorismate-synthase	unknown	unknown	gnl\|CDD\|235438
NZ_CP018628.1\|WP_095282797.1\|3150013_3150499_-\|phosphohistidine-phosphatase-SixA	unknown	unknown	gnl\|CDD\|182776
NZ_CP018628.1\|WP_095282787.1\|3139643_3140822_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|183487
NZ_CP018628.1\|WP_095284339.1\|3132328_3133597_-\|bifunctional-tetrahydrofolate-synthase/dihydrofolate-synthase	unknown	unknown	gnl\|CDD\|182774
NZ_CP018628.1\|WP_095282791.1\|3144995_3145544_-\|elongation-factor-P-hydroxylase	unknown	unknown	gnl\|CDD\|225643
NZ_CP018628.1\|WP_095282782.1\|3134727_3135387_-\|DedA-family-protein	unknown	unknown	gnl\|CDD\|182775
NZ_CP018628.1\|WP_095282793.1\|3146352_3147177_-\|penicillin-insensitive-murein-endopeptidase	unknown	unknown	gnl\|CDD\|236511
NZ_CP018628.1\|WP_095282784.1\|3136230_3137241_-\|aspartate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|181205
NZ_CP018628.1\|WP_095282790.1\|3144707_3144986_-\|YfcL-family-protein	unknown	unknown	gnl\|CDD\|378085

Protein	Function_ID	Function_description	E-value
NZ_CP018628.1\|WP_095282792.1\|3145543_3146353_-\|TSUP-family-transporter	gnl\|CDD\|182593	PRK10621, PRK10621, hypothetical protein; Provisional.	1.04882e-170
NZ_CP018628.1\|WP_095282796.1\|3149416_3149968_+\|endonuclease-SmrB	gnl\|CDD\|235321	PRK04946, PRK04946, endonuclease SmrB.	2.17842e-127
NZ_CP018628.1\|WP_095282789.1\|3142342_3144415_+\|bifunctional-tRNA-(5-methylaminomethyl-2-thiouridine)(34)-methyltransferase-MnmD/FAD-dependent-5-carboxymethylaminomethyl-2-thiouridine(34)-oxidoreductase-MnmC	gnl\|CDD\|234978	PRK01747, mnmC, bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC.	0
NZ_CP018628.1\|WP_095282798.1\|3150709_3152857_-\|fatty-acid-oxidation-complex-subunit-alpha-FadJ	gnl\|CDD\|236864	PRK11154, fadJ, fatty acid oxidation complex subunit alpha FadJ.	0
NZ_CP018628.1\|WP_095282788.1\|3141027_3142245_-\|beta-ketoacyl-ACP-synthase-I	gnl\|CDD\|181184	PRK07967, PRK07967, beta-ketoacyl-ACP synthase I.	0
NZ_CP018628.1\|WP_095282783.1\|3135415_3136228_-\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	4.1339e-146
NZ_CP018628.1\|WP_095282799.1\|3152856_3154167_-\|acetyl-CoA-C-acyltransferase-FadI	gnl\|CDD\|181597	PRK08963, fadI, 3-ketoacyl-CoA thiolase; Reviewed.	0
NZ_CP018628.1\|WP_095282781.1\|3133667_3134573_-\|acetyl-CoA-carboxylase,-carboxyltransferase-subunit-beta	gnl\|CDD\|235547	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta.	0
NZ_CP018628.1\|WP_095282785.1\|3137308_3138445_-\|4-phosphoerythronate-dehydrogenase-PdxB	gnl\|CDD\|185335	PRK15438, PRK15438, erythronate-4-phosphate dehydrogenase PdxB; Provisional.	0
NZ_CP018628.1\|WP_095282786.1\|3138562_3139567_+\|flagella-biosynthesis-regulator-Flk	gnl\|CDD\|182670	PRK10715, flk, flagella biosynthesis regulator Flk.	8.47174e-178
NZ_CP018628.1\|WP_095282795.1\|3148326_3149259_-\|50S-ribosomal-protein-L3-N(5)-glutamine-methyltransferase	gnl\|CDD\|236988	PRK11805, PRK11805, 50S ribosomal protein L3 N(5)-glutamine methyltransferase.	0
NZ_CP018628.1\|WP_095282794.1\|3147179_3148265_-\|chorismate-synthase	gnl\|CDD\|235438	PRK05382, PRK05382, chorismate synthase; Validated.	0
NZ_CP018628.1\|WP_095282797.1\|3150013_3150499_-\|phosphohistidine-phosphatase-SixA	gnl\|CDD\|182776	PRK10848, PRK10848, phosphohistidine phosphatase SixA.	3.23669e-121
NZ_CP018628.1\|WP_095282787.1\|3139643_3140822_-\|MFS-transporter	gnl\|CDD\|183487	PRK12382, PRK12382, putative transporter; Provisional.	0
NZ_CP018628.1\|WP_095284339.1\|3132328_3133597_-\|bifunctional-tetrahydrofolate-synthase/dihydrofolate-synthase	gnl\|CDD\|182774	PRK10846, PRK10846, bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional.	0
NZ_CP018628.1\|WP_095282791.1\|3144995_3145544_-\|elongation-factor-P-hydroxylase	gnl\|CDD\|225643	COG3101, COG3101, Uncharacterized protein conserved in bacteria [Function unknown].	5.00511e-124
NZ_CP018628.1\|WP_095282782.1\|3134727_3135387_-\|DedA-family-protein	gnl\|CDD\|182775	PRK10847, PRK10847, DedA family protein.	4.76608e-159
NZ_CP018628.1\|WP_095282793.1\|3146352_3147177_-\|penicillin-insensitive-murein-endopeptidase	gnl\|CDD\|236511	PRK09429, mepA, penicillin-insensitive murein endopeptidase; Reviewed.	4.04123e-170
NZ_CP018628.1\|WP_095282784.1\|3136230_3137241_-\|aspartate-semialdehyde-dehydrogenase	gnl\|CDD\|181205	PRK08040, PRK08040, putative semialdehyde dehydrogenase; Provisional.	0
NZ_CP018628.1\|WP_095282790.1\|3144707_3144986_-\|YfcL-family-protein	gnl\|CDD\|378085	pfam08891, YfcL, YfcL protein. This family of proteins are functionally uncharacterized. THey are related to the short YfcL protein from E. coli.	3.70955e-40

>NZ_CP018628.1|WP_095282789.1|3142342_3144415_+|bifunctional-tRNA-(5-methylaminomethyl-2-thiouridine)(34)-methyltransferase-MnmD/FAD-dependent-5-carboxymethylaminomethyl-2-thiouridine(34)-oxidoreductase-MnmC
MHHRAHIVKIVPLPVRRVTYVKQNAIQPANLEFNAEGTPVSRDFDDVYFSNDNGLEETRYVFLDGNQLSARFPVHPRSQFVVAESGFGTGLNFLTLWQAFDQFCEAHPDATLQRLHFISFEKFPLTAQDLRLAHQHWPELRVWAEQLQTRWPQPIGGCHRLVLDDGRVTLDLWLGDINDLTDKLDDSLNQKVDAWFLDGFAPAKNPDMWSENLFAAMARLARPGATLATFTCAGFVRRGLQDAGFTMRKTKGFGRKREMLTGVMEQDNTQPARTPWFARSGAEKRETAIIGGGIASVLLSLALIQRGWQVTLYCADPAPAAGASGNRQGALYPLLTAHDPALSQFFPAAFTFARRLYDALPVKFDHQWCGVTQLGWDEKSQRKIDQMLSMGMPAQIATAVDAQQVLENSGLPTGCGGIHYPLGGWLCPAELTAAAMTLAQSQGLTVHFGYQLESFERRDDSWQLRFSSGSEALHSSLVLANGHRIGDFPQTENLPVYPVGGQVSHIPTTPQLKKLRQVLCYDGYLTPQNPANGHHCIGASYHRGQTEIQYSEEDQQQNRQRLIDCFPQAEWVKEVDVNDANARCGIRCATRDHLPMIGNVPDYAATLTTYEDLAENQESAASAPVHPNLFMLGALGSRGLCTAPLAAEILASQMSEEPIPMDAITLAGLNPNRLWVRKLLKGKLVKLGAA
>NZ_CP018628.1|WP_095282788.1|3141027_3142245_-|beta-ketoacyl-ACP-synthase-I
MKRAVITGLGIVSSIGNNQQEVLESLREGRSGITFSQEFKDSGMRSHVWGNVKLDTTGLIDRKVVRFMNDASIYAYLSMQQAVEDAGLKEDVYQNNPRVGLIAGSGGSSKSQVFGADAMRSPRGLKAVGPYVVTKAMASAVSACLATPFKIHGVNYSISSACATSAHCIGSAVEQIQLGKQDIVFAGGGEELCWEMACEFDAMGALSTKYNETPEKASRTYDAHRDGFIIAGGGGMVVVEELEHALARGAHIYAEVVGYGATSDGADMVAPSGEGAVRCMKLAMDGVDTPIDYLNSHGTSTPVGDVKELGAIREVFGDNSPAISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINVEELDEQAAGLNIVTKPTEQALTTVMSNSFGFGGTNATLVMRKLKA
>NZ_CP018628.1|WP_095282787.1|3139643_3140822_-|MFS-transporter
MTAVTQTEKTASANVSLFRIAFAVFLTYLTVGLPLPVIPLFVHQELGYGNTLVGVAVGIQFLATVLTRGYAGRLADQHGAKRSALQGMFACGLAGGAWLLAALLPVDALYKFALLIVGRLILGFGESQLLTGTLTWGMGLVGPTRSGKVMSWNGMAIYGALAAGAPLGLLIHSHFGFAALAGTTMVLPLVAWAFNGTVRKVPAHKGERPSLWSVVGQIWKPGLGLALQGVGFAVIGTFVSLYFMSRGWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAVVSLVIETLGLLLLWQAPVAWIALLGAALTGCGCSLIFPALGVEVVKRVAPQIRGTALGGYAAFQDISYGITGPLAGVLATSFGYPSVFLAGAVSAVVGIVVTIIAFRKR
>NZ_CP018628.1|WP_095282786.1|3138562_3139567_+|flagella-biosynthesis-regulator-Flk
MQPISGTPPRPPGEGPVTASAIGEQPLSTQQRTVLERLITRLVALTSQQNAEVWAGMKHDLGLKNDTPLLSRHFPAAEQNLNLRLNTAQQNHTTRQIVSQLTELLSQGNNRQAVSDFIRQQFGQTALSQLTPDQLKTVLTLLQSNQLSIPQPQQRPATERPLQPAEHNTLKQMVTRLAAATGESNKLIWQSMLELSGVKAGELIPAKQFTHLVTWLQARQTLSTQSAPTLHTLQAALKQPLEPREFEAVREYAQQNWQVTPQTVLTTAQVQDLLNQIFIRRAERDGGVPEARNIQPIYSPLFAPVVETMKSLSARPGLMFIALMIALALFWLVA
>NZ_CP018628.1|WP_095282785.1|3137308_3138445_-|4-phosphoerythronate-dehydrogenase-PdxB
MKILVDENMPYARELFSRLGDVKAVPGRPIPLAELDDADALMVRSVTKVNETLLSGKSVKFVGTATAGTDHVDDAWLAQAGIGFSAAPGCNAIAVVEYVFSSLLMLGERDGFALKDRTVGIVGVGNVGGRLQKRLEALGIRTLLCDPPRADRGDEGDFRALDELVEQADVITFHTPLFKDGPYKSLHLADEAFIRRLKPGTILINACRGPVVDNAALLKCLEEGQDLSVVLDVWEPEPDLNVTLLNHVDVATAHIAGYTLEGKARGTTQVFEAYSAFIGNPQQVSLDSLLPAPEFGRITLHGSLDESSLKRLVHLVYDVRRDDALLRKVAGTPGEFDKLRKNYLERREWSSLYVICDDATAATLLNQLGFNATYNPAR
>NZ_CP018628.1|WP_095282784.1|3136230_3137241_-|aspartate-semialdehyde-dehydrogenase
MSEGWNIAVLGATGAVGEALLETLAERQFPVGEIYALSRAESAGTSLRYEGKTVRAQDVAEFDWTQAQLAFFAGGAEASAAYAEEAANAGCLVIDLSGLFSLEPDVPLVVPDVNPFVLADYRNRNIIAVPDSLTSQLLTALKPLIDDGGLARINVTSLLSVSAQGKKAVDALAGQSAKLLNGIPVDDDDFFGRQLAFNLMPILADREGSVREERRIVDETRKILQDDGLIISATCVRAPVFYGHAQMVSFEALRPLAAEEARYAFERGEDISLSEETDFPTQVGDATGNARLSIGCVRNDYGMPEQVQFWSVADNVRFGGALMAVKIAEKLVQEYL
>NZ_CP018628.1|WP_095282783.1|3135415_3136228_-|tRNA-pseudouridine(38-40)-synthase-TruA
MSEVEHKPVHRIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPIGVLCAGRTDAGVHGTGQVVHFETTAVRKHAAWTLGVNANLPGDIAVRWVKDVPDDFHARFSATARRYRYVIYNQRLRPAVLSQGVTHFYEPLDAERMHRAAQFLLGENDFTSFRAVQCQSRTPWRNVMHITVSRYGAYVVVDIKANAFVHHMVRNIVGSLMEVGAGHQPESWIAELLAAKDRTLAAATAKAEGLYLVSVDYPDRFDLPKPPMGPLFLAD
>NZ_CP018628.1|WP_095282782.1|3134727_3135387_-|DedA-family-protein
MDLIRFIIDFILHIDVHLAELVAQYGVWVYAILFLILFCETGLVVTPFLPGDSLLFVAGALSALPTNDLNVHLMVVLMIIAAIVGDAVNYTIGRVFGERLFSNPNSKIFRRSYLDKTHAFYERHGGKTIILARFVPIVRTFAPFVAGMGHMSYRHFAAYNVIGALLWVLLFTYAGYLFGDLPIVQENLKLLIVAIIVLSILPGVIEIIRHKRAAAKQAK
>NZ_CP018628.1|WP_095282781.1|3133667_3134573_-|acetyl-CoA-carboxylase,-carboxyltransferase-subunit-beta
MSWIERIKSNIAPTRKASIPEGVWTKCDSCGQVLYRAELERNLEVCPKCDHHMRMSARNRLHSVLDEGSLVELGSELEPKDVLKFRDSKKYKDRLASAQKETGEKDALVVMKGTLHEMPVVAVAFEFSFMGGSMGSVVGARFIRAVEQALEDNCPLICFSASGGARMQEALMSLMQMAKTSAALGKMQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFAGPRVIEQTVREKLPPGFQRSEFLIEKGAIDMIVRRPEMRLKLASVLAKLMNLPSPNPDEPREGVVVPDQEPEA
>NZ_CP018628.1|WP_095284339.1|3132328_3133597_-|bifunctional-tetrahydrofolate-synthase/dihydrofolate-synthase
MEKNIAPQATSPLVTWLSYLENLHSKTIDMGLERVSQVGARLDVLKPAPFVFTVAGTNGKGTTCRTLESMLMAAGYKVGVYSSPHLVRYTERVRVQNTELPESAHTASFAEIEAARGEISLSYFEYGTLSALWLFKQAQLDVVILEVGLGGRLDATNMVDADVAVVTSIALDHTDWLGPDRESIGREKAGVFRANKPAVVGEPDMPHTIADVAQEKGAHLMRRGVDWQYEMTADGWRFSDAQGVLDNLPLPQVPQPNAATALAAIRASGLEVSEQAIRDGIQNALLPGRFQIISESPRLILDVAHNPHAAAYLAERLKSLPKTGRVLAVIGMLHDKDIAGTLACMESVVDCWYCAPLEGPRGASAEQLMEHLAQGEAYENVALAWHAAMADAKPEDTVLVCGSFHTVAHVMEVMEAGRTGGK
>NZ_CP018628.1|WP_095282790.1|3144707_3144986_-|YfcL-family-protein
MIAEFESRILALIDDMVEHASDDELFASGYLRGHLTLAVAELEAGDDHSPEAVHTEVSRGLEKAIQAGELSPRDQSLVLGMWDNLFQQANLK
>NZ_CP018628.1|WP_095282791.1|3144995_3145544_-|elongation-factor-P-hydroxylase
MNSTHKYEQLIEIFDGCFADDFNTRLIKGDDEPIYLPADADAPYNRIVFAHGFYASGLHEISHWCIAGKARRELVDFGYWYCPDGRDATTQGQFEDVEVKPQAFDWLFCVAAGFPFNVSCDNLEGDCEPDRITFQRRVHAQVMEYLEKGIPERPARFIKALQNYYHTPELKAELFPWPEDLN
>NZ_CP018628.1|WP_095282792.1|3145543_3146353_-|TSUP-family-transporter
MDNFVDLFMVSPLLLVVLFFVAMLAGFIDALAGGGGLLTVPALLAAGMSPAQALATNKLQACGGSLSASIYFIRRKVVSLADQKLNILMTFIGSTSGALLVQHVQSDILRQILPILVICIGLYFLLMPKLGEEDRQRRLHGLPFALIAGGCVGFYDGFFGPGAGSFYALAFVTLAGFNLAKSTAHAKVLNATSNLGGLLLFIIGGKVIWATGFVMMVGQFLGARVGSRLVLSKGQQLIRPMIVIVSAVMSAKLLYDSHGQEILHWLGMN
>NZ_CP018628.1|WP_095282793.1|3146352_3147177_-|penicillin-insensitive-murein-endopeptidase
MKKTAIALLALLASGASLAATPWQKITHPIAGSAQSIGAFANGCIVGAQDLPLQSDTYQVMRTDQRRYFGHPDLVLFIQRLGNQVHNLGMGTMLIGDMGMPAGGRFNGGHASHQSGLDVDIFLQLPKTRWSSAQLLKPQALDLVARDGKSVVPSLWSPDISSMIKLAAKDNDVTRIFVNPAIKQQLCLDAGTDRDWLRKVRPWFQHRAHMHVRLRCPANSLECEDQPLPPPGDGCGAELQSWFEPAKPGTTKPEKKTPPPLPPSCQALLDEHVL
>NZ_CP018628.1|WP_095282794.1|3147179_3148265_-|chorismate-synthase
MAGNSIGQLFRVTTFGESHGLALGCIVDGVPPGIELTEADLQHDLDRRRPGTSRYTTQRREPDQVKILSGVFEGRTTGTSIGLLIENTDQRSQDYGAIKDVFRPGHADYTYEQKYGFRDYRGGGRSSARETAMRVAAGAIAKKYLAQKFGIVIRGCLTQMGDIPLAIKDWDLVEQNPFFCADADKIDALDELMRGLKKEGDSIGAKVTVVADGVPPGLGEPVFDRLDADIAHAMMSINAVKGVEIGDGFDVVALRGSQNRDEITKDGFQSNHAGGILGGISSGQQIVTNIALKPTSSITVPGRTINRSGEEVEMITKGRHDPCVGIRAVPIAEAMLAIVLMDHFLRQRAQNADVTAPLPRW
>NZ_CP018628.1|WP_095282795.1|3148326_3149259_-|50S-ribosomal-protein-L3-N(5)-glutamine-methyltransferase
MDKIFVDEAVNELHTIQDMLRWSVSRFSAANIWYGHGTDNPWDEAVQLVLPSLYLPLDIPEDMRTARLTSSEKHRIVERVIRRVNERIPVAYLTNKAWFCGHEFYVDERVLVPRSPIGELINNHFAGLIDHQPQHILDMCTGSGCIAIACAYAYPEAEVDAVDISTDALAVTEHNIEEHGLIHHVTPIRSDLFRDLPKLQYDLIVTNPPYVDAEDMSDLPNEYRHEPELGLASGSDGLKLTRRILACAPDYLTDDGILICEVGNSMVHLMEQYPDVPFTWLEFDNGGEGVFMLTKAQLIAAREYFSIYKD
>NZ_CP018628.1|WP_095282796.1|3149416_3149968_+|endonuclease-SmrB
MKKKMPLSEEDQTLFRQLMSGTRKITQDTIVHRPIRKKVTEVPVKRLLQEQADNSHYFSDEFQPLLNTQGAVKYVREDVSHFELKKLRRGDYSPELFLDLHGLTQMQAKQELGALIAACRREHVFCTCVMHGHGKHILKQQTPLWLAQHPHVMAFHQAPKEYGGDAALLVLIEVEEWQPPELP
>NZ_CP018628.1|WP_095282797.1|3150013_3150499_-|phosphohistidine-phosphatase-SixA
MQVFIMRHGDAALDAASDSVRPLTTCGCDESRQMATWLKGQKVDIDRVLVSPFLRAEQTLDVVGECMNLPKGVDVLPELTPCGDVGLVSAYLQALCNEGVASALVISHLPLVGYLVSELCPGETPPMFTTSAIANVTLDESGKGVFNWQMSPCNLKMAKAI
>NZ_CP018628.1|WP_095282798.1|3150709_3152857_-|fatty-acid-oxidation-complex-subunit-alpha-FadJ
METTSAFSLKVRLDNIAVVTIDVPGEKMNTLKAEFGVQVRAILKQIRENKEIRGLIFISAKPDNFIAGADINMIARANSAMEAEELARQGQQIMAEIHGLPIPVIAAIHGACLGGGLELALACHSRICTDDGKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRPRQALKAGLVDEVVPHSILLEAAVELALKGRQASRHLPVRERILAGPLGRALLFNMVGKKTEQKTKGNYPATKRILSVIETGLSQGSSSGYAAEAKAFGELAMTPQSQALRSIFFASTDVKKDPGSDASPAPLTAIGVLGGGLMGGGIAFVTASKGKLPVRIKDINPKGINHALQYSWQHLDQKVKRRHIKASERDKELALISGTTDYSGFQHRDVVIEAVFEDLNLKQQMVAEVEQHCAPHTIFASNTSSLPIGDIAEKAARPEQVIGLHFFSPVEKMPLVEVIPHASTSAQTVATVVKLAKLQGKTPIVVADKAGFYVNRILAPYINEAMRLLTEGEKIDHIDEALVKFGFPVGPIQLLDEVGIDTGTKIIPVLEAAYGERFSPPANIVSTILNDDRKGRKNGRGFYLYAVKGRKSKKQVDPSVYGLIRASGQGKLSAQQCAERCVMMMLNEAARCFDEQVVRSARDGDIGAVFGIGFPPFLGGPFRYMDSLGAGEVVAILQRLASLYGPRFTPCEPLMRMAENNLHFWPTEETDLVT
>NZ_CP018628.1|WP_095282799.1|3152856_3154167_-|acetyl-CoA-C-acyltransferase-FadI
MSQALPLVTRQGDRIAIVSGLRTPFARQATAFHGIPAVDLGKMVVGEMLARSEIPPEVIEQLVFGQVVQMPEAPNIAREIVLGTGMNVHTDAYSVSRACATSFQAVANVAESLITGTIRAGIAGGADSSSVLPIGVSKKLARVLVDVNKARTMGQRLKLFSRLRLRDLAPVPPAVAEYSTGLRMGDTAEQMAKTYGITREQQDALAHRSHQRAALAWSEGKLADEVMTAYIPPFREPLVEDNNIRGNSTLADYAKLRPAFDRKHGTVTAANSTPLTDGAAAVILMTESRAKELGLVPLGYLRSYAFTAIDVWQDMLLGPAWSTPLALERAGLTMADLTLIDMHEAFAAQTLANLQLLASERFARDVLGRVHATGEVDESKFNVLGGSIAYGHPFAATGARMITQTLHELRRRGGGFGLVTACAAGGLGAAMVLEAE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP018628_4	4.1\|2348555\|26\|NZ_CP018628\|CRISPRCasFinder	2348555-2348580	26	NZ_CP018628.1	611227-611252	1	0.962
NZ_CP018628_4	4.1\|2348555\|26\|NZ_CP018628\|CRISPRCasFinder	2348555-2348580	26	NZ_CP018628.1	611279-611304	1	0.962

1. spacer 4.1|2348555|26|NZ_CP018628|CRISPRCasFinder matches to position: 611227-611252, mismatch: 1, identity: 0.962

acggtctttttgtcgggtggcggctg	CRISPR spacer
acggtctttttgccgggtggcggctg	Protospacer
************.*************

2. spacer 4.1|2348555|26|NZ_CP018628|CRISPRCasFinder matches to position: 611279-611304, mismatch: 1, identity: 0.962

acggtctttttgtcgggtggcggctg	CRISPR spacer
acggtctttttgccgggtggcggctg	Protospacer
************.*************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP018628_4	4.1\|2348555\|26\|NZ_CP018628\|CRISPRCasFinder	2348555-2348580	26	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	324005-324030	4	0.846
NZ_CP018628_4	4.1\|2348555\|26\|NZ_CP018628\|CRISPRCasFinder	2348555-2348580	26	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	533033-533058	4	0.846
NZ_CP018628_4	4.1\|2348555\|26\|NZ_CP018628\|CRISPRCasFinder	2348555-2348580	26	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	323576-323601	4	0.846
NZ_CP018628_4	4.1\|2348555\|26\|NZ_CP018628\|CRISPRCasFinder	2348555-2348580	26	LR134122	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2	447541-447566	4	0.846
NZ_CP018628_4	4.1\|2348555\|26\|NZ_CP018628\|CRISPRCasFinder	2348555-2348580	26	LR134122	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2	316973-316998	4	0.846
NZ_CP018628_4	4.1\|2348555\|26\|NZ_CP018628\|CRISPRCasFinder	2348555-2348580	26	LR134122	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2	447701-447726	4	0.846
NZ_CP018628_4	4.1\|2348555\|26\|NZ_CP018628\|CRISPRCasFinder	2348555-2348580	26	NZ_CP022370	Bosea sp. AS-1 plasmid unnamed1, complete sequence	36912-36937	5	0.808
NZ_CP018628_4	4.1\|2348555\|26\|NZ_CP018628\|CRISPRCasFinder	2348555-2348580	26	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	80939-80964	6	0.769

1. spacer 4.1|2348555|26|NZ_CP018628|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 4, identity: 0.846

acggtctttttgtcgggtggcggctg	CRISPR spacer
gccgtttttttgtcgggtggcggcta	Protospacer
.* **.*******************.

2. spacer 4.1|2348555|26|NZ_CP018628|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 4, identity: 0.846

acggtctttttgtcgggtggcggctg	CRISPR spacer
gccgtttttttgtcgggtggcggcta	Protospacer
.* **.*******************.

3. spacer 4.1|2348555|26|NZ_CP018628|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 4, identity: 0.846

-acggtctttttgtcgggtggcggctg	CRISPR spacer
tgccgt-tttttgtcgggtggcggcta	Protospacer
 .* ** *******************.

4. spacer 4.1|2348555|26|NZ_CP018628|CRISPRCasFinder matches to LR134122 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2) position: , mismatch: 4, identity: 0.846

acggtctttttgtcgggtggcggctg	CRISPR spacer
gccgtttttttgtcgggtggcggcta	Protospacer
.* **.*******************.

5. spacer 4.1|2348555|26|NZ_CP018628|CRISPRCasFinder matches to LR134122 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2) position: , mismatch: 4, identity: 0.846

-acggtctttttgtcgggtggcggctg	CRISPR spacer
tgccgt-tttttgtcgggtggcggcta	Protospacer
 .* ** *******************.

6. spacer 4.1|2348555|26|NZ_CP018628|CRISPRCasFinder matches to LR134122 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2) position: , mismatch: 4, identity: 0.846

-acggtctttttgtcgggtggcggctg	CRISPR spacer
tgccgt-tttttgtcgggtggcggcta	Protospacer
 .* ** *******************.

7. spacer 4.1|2348555|26|NZ_CP018628|CRISPRCasFinder matches to NZ_CP022370 (Bosea sp. AS-1 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.808

acggtctttttgtcgggtggcggctg	CRISPR spacer
ccggtatttttgtcgcgtggcggcga	Protospacer
 **** ********* ******** .

8. spacer 4.1|2348555|26|NZ_CP018628|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 6, identity: 0.769

acggtctttttgtcgggtggcggctg	CRISPR spacer
ggaatatttttgtcgggtggcggcta	Protospacer
. ..* *******************.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2359620 : 2391365

Enterobacteria_phage(23.68%)

transposase,tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_095282124.1\|2359620_2360289_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	2.8e-81	60.8
WP_095282125.1\|2360289_2360607_-	hypothetical protein	K7PGV5	Enterobacterial_phage	1.3e-33	66.3
WP_095282126.1\|2360606_2360846_-	hypothetical protein	K7P7N3	Enterobacteria_phage	2.0e-26	71.8
WP_095284284.1\|2360933_2361566_-\|tail	tail fiber domain-containing protein	A0A0D4D9I5	Escherichia_phage	1.9e-31	54.7
WP_095284286.1\|2362143_2362389_-	cor protein	E4WL42	Enterobacteria_phage	1.5e-29	76.3
WP_095282127.1\|2362500_2363175_-	hypothetical protein	K7PGX6	Enterobacteria_phage	4.2e-109	88.4
WP_095282129.1\|2363478_2366634_-	host specificity protein J	I6R9B3	Salmonella_phage	0.0e+00	88.3
WP_095282130.1\|2366643_2367171_-\|tail	tail assembly protein	H6WRW3	Salmonella_phage	3.4e-66	81.6
WP_095282131.1\|2367113_2367833_-	C40 family peptidase	A0A1V0E5M9	Salmonella_phage	4.4e-117	78.2
WP_039025419.1\|2367832_2368537_-\|tail	phage minor tail protein L	A0A1V0E5N2	Salmonella_phage	1.3e-134	97.0
WP_095282132.1\|2368573_2368927_-\|tail	phage tail protein	H6WRV8	Salmonella_phage	1.1e-49	82.1
WP_095282133.1\|2368979_2369204_+	hypothetical protein	NA	NA	NA	NA
WP_095282134.1\|2369227_2372413_-	tape measure protein	A0A0H5AWE4	Pseudomonas_phage	4.0e-85	69.3
WP_095282135.1\|2372477_2372885_-	hypothetical protein	NA	NA	NA	NA
WP_095282136.1\|2373012_2373702_-	hypothetical protein	F1C5E8	Cronobacter_phage	9.9e-66	54.4
WP_095282137.1\|2373753_2374509_-	Ig domain-containing protein	G0ZNE6	Cronobacter_phage	9.6e-38	40.0
WP_095282138.1\|2374575_2374959_-	hypothetical protein	G0ZNE4	Cronobacter_phage	9.2e-29	47.2
WP_095282139.1\|2374955_2375324_-	hypothetical protein	F1C5E3	Cronobacter_phage	1.9e-39	69.7
WP_095282140.1\|2375410_2376578_+\|transposase	IS3-like element IS911 family transposase	Q716C2	Shigella_phage	4.4e-183	99.3
WP_095282141.1\|2376513_2376969_-	hypothetical protein	F1C5C4	Cronobacter_phage	1.3e-45	70.2
WP_095284287.1\|2376958_2377810_-	DNA replication protein	A0A0N7C1Z7	Escherichia_phage	3.9e-96	64.6
WP_167381234.1\|2377850_2377997_-	hypothetical protein	NA	NA	NA	NA
WP_095282142.1\|2378030_2378345_-	hypothetical protein	A5VW96	Enterobacteria_phage	2.3e-17	45.8
WP_012016415.1\|2378458_2378686_-	hypothetical protein	A0A088CE43	Shigella_phage	1.9e-29	84.9
WP_041689320.1\|2378770_2379535_+	helix-turn-helix transcriptional regulator	A0A088CBP2	Shigella_phage	9.0e-92	63.0
WP_095282143.1\|2379629_2380166_+	hypothetical protein	NA	NA	NA	NA
WP_095282144.1\|2380162_2380921_+	DUF1828 domain-containing protein	NA	NA	NA	NA
WP_095282145.1\|2380945_2381152_-	hypothetical protein	K7P7I0	Enterobacteria_phage	1.4e-28	91.2
WP_095282146.1\|2381537_2381825_+	transcriptional regulator	NA	NA	NA	NA
WP_095282147.1\|2381864_2382107_-	hypothetical protein	NA	NA	NA	NA
WP_095282148.1\|2382343_2382676_+	hypothetical protein	A0A2I7R1U5	Vibrio_phage	1.2e-11	43.0
WP_095282149.1\|2382728_2382992_+	hypothetical protein	NA	NA	NA	NA
WP_095282150.1\|2383043_2383271_+	hypothetical protein	NA	NA	NA	NA
WP_095284289.1\|2383326_2383575_+	DUF2829 domain-containing protein	A0A1B0VMG3	Pseudomonas_phage	6.4e-15	52.4
WP_095282151.1\|2383717_2383927_+	hypothetical protein	I2GUB4	Acinetobacter_phage	5.7e-09	46.4
WP_095282152.1\|2383923_2384229_+	hypothetical protein	NA	NA	NA	NA
WP_095282153.1\|2384228_2384528_+	hypothetical protein	NA	NA	NA	NA
WP_095282154.1\|2384603_2385575_+	hypothetical protein	M9P0E1	Enterobacteria_phage	5.2e-60	78.4
WP_060682548.1\|2385583_2385868_+	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	3.4e-44	89.4
WP_095282155.1\|2385877_2386792_+	recombinase RecT	M9NZA6	Enterobacteria_phage	3.5e-151	86.9
WP_095282157.1\|2387026_2387707_+	YqaJ viral recombinase family protein	M9NZE1	Enterobacteria_phage	1.8e-99	73.9
WP_095284290.1\|2387703_2387877_+	DUF1317 family protein	A0A0N7CHV0	Escherichia_phage	1.7e-14	77.1
WP_095282158.1\|2387854_2388406_+	phage N-6-adenine-methyltransferase	E5AGF8	Erwinia_phage	1.3e-55	60.6
WP_095282159.1\|2388402_2388627_+	hypothetical protein	S4TRP7	Salmonella_phage	6.2e-09	45.8
WP_095282160.1\|2388623_2388845_+	TraR/DksA family transcriptional regulator	A0A0N7C211	Escherichia_phage	6.5e-11	48.5
WP_095282161.1\|2388923_2389271_+	DUF2591 family protein	A0A2P1MXA7	Escherichia_phage	4.0e-15	46.7
WP_095282162.1\|2389500_2389689_+	hypothetical protein	A0A2H4FQS9	Salmonella_phage	3.3e-08	46.0
WP_095282163.1\|2389798_2390047_+	excisionase family protein	S4TND0	Salmonella_phage	2.6e-16	53.1
WP_095282164.1\|2390078_2391365_+	DUF3596 domain-containing protein	Q6HA01	Enterobacteria_phage	1.9e-134	55.8

DBSCAN-SWA_2

2764808 : 2819005

Pseudomonas_phage(16.67%)

integrase,transposase,plate

attL 2760740:2760754|attR 2768932:2768946

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2760740:2760754	attL	NA	NA	NA	NA
WP_058654371.1\|2764808_2766077_+\|integrase	integrase arm-type DNA-binding domain-containing protein	A0A1B0VMI6	Pseudomonas_phage	1.8e-76	40.9
WP_058654372.1\|2766256_2766649_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_058654373.1\|2766700_2767024_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA
WP_058654374.1\|2767020_2767638_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA
WP_095282497.1\|2767627_2769625_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA
2768932:2768946	attR	NA	NA	NA	NA
WP_095282498.1\|2769627_2770554_-	ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_058654377.1\|2770659_2772192_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_045418712.1\|2772195_2773395_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_157738404.1\|2773394_2774894_-	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_045419030.1\|2775142_2775760_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_095282500.1\|2777977_2778196_+	hypothetical protein	NA	NA	NA	NA
WP_003036401.1\|2778342_2778528_+	AlpA family transcriptional regulator	A0A2H4J8C8	uncultured_Caudovirales_phage	4.3e-08	52.0
WP_045419029.1\|2778646_2779237_+	DUF2857 domain-containing protein	NA	NA	NA	NA
WP_095282501.1\|2779226_2779436_+	TraR/DksA family transcriptional regulator	NA	NA	NA	NA
WP_058654379.1\|2779827_2780049_+	hypothetical protein	NA	NA	NA	NA
WP_095282502.1\|2780119_2780764_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA
WP_045418700.1\|2780760_2781039_+	TrbC/VirB2 family protein	NA	NA	NA	NA
WP_095282503.1\|2781050_2783798_+	ATPase	NA	NA	NA	NA
WP_095282504.1\|2783820_2784549_+	type IV secretion system protein VirB5	NA	NA	NA	NA
WP_095282505.1\|2784560_2784836_+	EexN family lipoprotein	NA	NA	NA	NA
WP_095282506.1\|2784907_2785939_+	type IV secretion system protein	NA	NA	NA	NA
WP_032936799.1\|2786029_2786170_+	hypothetical protein	NA	NA	NA	NA
WP_095282507.1\|2786162_2786846_+	type IV secretion system protein	NA	NA	NA	NA
WP_095282508.1\|2786845_2787733_+	P-type conjugative transfer protein VirB9	NA	NA	NA	NA
WP_095282509.1\|2787729_2789046_+	TrbI/VirB10 family protein	NA	NA	NA	NA
WP_045418681.1\|2789035_2790055_+	P-type DNA transfer ATPase VirB11	NA	NA	NA	NA
WP_095282510.1\|2790115_2790418_+	conjugal transfer protein	NA	NA	NA	NA
WP_095282512.1\|2791117_2792977_+	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA
WP_095282513.1\|2792986_2793733_+	molybdopterin-guanine dinucleotide biosynthesis protein MobC	NA	NA	NA	NA
WP_157738405.1\|2793926_2794874_-	DUF1738 domain-containing protein	A0A1V0EEV1	Caulobacter_phage	1.1e-51	39.6
WP_095284315.1\|2795608_2796682_+	type II toxin-antitoxin system RnlA family toxin	NA	NA	NA	NA
WP_060854645.1\|2796687_2797026_+	hypothetical protein	NA	NA	NA	NA
WP_095282515.1\|2797282_2798503_+	DUF4338 domain-containing protein	NA	NA	NA	NA
WP_157738406.1\|2798523_2799906_+	hypothetical protein	NA	NA	NA	NA
WP_095280101.1\|2799939_2801059_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	2.3e-51	43.7
WP_095282517.1\|2801146_2802574_+	hypothetical protein	NA	NA	NA	NA
WP_095282518.1\|2802570_2803635_+	hypothetical protein	NA	NA	NA	NA
WP_095282519.1\|2803649_2808284_+	DEAD/DEAH box helicase	A0A1B1IUF6	uncultured_Mediterranean_phage	8.8e-41	22.2
WP_094461488.1\|2808340_2809508_+\|transposase	IS3-like element IS911 family transposase	Q716C2	Shigella_phage	5.2e-184	99.7
WP_095282520.1\|2809773_2810442_+	DUF1998 domain-containing protein	NA	NA	NA	NA
WP_095282521.1\|2810927_2812388_-	hypothetical protein	NA	NA	NA	NA
WP_095282522.1\|2812736_2813102_+	hypothetical protein	NA	NA	NA	NA
WP_095282523.1\|2813867_2815208_-	hypothetical protein	NA	NA	NA	NA
WP_095282524.1\|2815223_2815673_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_167381219.1\|2815672_2816215_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_095282526.1\|2816183_2817278_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_095282527.1\|2817241_2819005_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP018628

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection