CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP022602	Ochrobactrum quorumnocens strain A44 plasmid unnamed2, complete sequence	0 crisprs	NA	0	0	1	0
NZ_CP022603	Ochrobactrum quorumnocens strain A44 chromosome 2, complete sequence	1 crisprs	cas3,DEDDh,csa3	0	0	1	0
NZ_CP022604	Ochrobactrum quorumnocens strain A44 chromosome 1, complete sequence	2 crisprs	csa3,WYL,DEDDh	1	1	4	1
NZ_CP022605	Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence	0 crisprs	csa3	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2035 : 8445

Rhizobium_phage(33.33%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_095444056.1\|2035_2371_+	hypothetical protein	B4UTS1	Rhizobium_phage	4.1e-17	45.9
WP_095444057.1\|2411_2693_-	30S ribosomal protein S21	M1HLV7	Pelagibacter_phage	9.5e-07	53.7
WP_095444059.1\|3249_3459_-	cold-shock protein	A0A218MMZ6	uncultured_virus	6.8e-10	54.7
WP_095444060.1\|3767_3992_-	hypothetical protein	NA	NA	NA	NA
WP_095444061.1\|4872_5262_+\|transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	3.9e-11	40.0
WP_095444063.1\|6409_6619_-	hypothetical protein	NA	NA	NA	NA
WP_095444080.1\|6708_7566_+	bifunctional DNA primase/polymerase	B4UTY9	Rhizobium_phage	2.9e-38	45.9
WP_095444064.1\|7746_8445_+	porin family protein	O11861	Bartonella_henselae_phage	2.9e-41	39.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP022603

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP022603_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022603_1

1040527-1040622

Orphan

Consensus_repeat	Method
GCGGCATGGATTTCTAAGAAATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP022603_1

>merge|NZ_CP022603|1|1040527-1040622|CRISPRCasFinder
GCGGCATGGATTTCTAAGAAATCCATAAAGCACGCCCATGGTTTAAAGCTTGCTCCGCAAAGCGGCGCGGGTCGCGGCATGGATTTCTAAGAAGTC

>NZ_CP022603|1|1|1040527-1040622|CRISPRCasFinder
GCGGCATGGATTTCTAAGAAATC	CATAAAGCACGCCCATGGTTTAAAGCTTGCTCCGCAAAGCGGCGCGGGTC
GCGGCATGGATTTCTAAGAAGTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022603.1\|WP_095444875.1\|1029835_1030396_-\|cytochrome-b	unknown	unknown	gnl\|CDD\|225580
NZ_CP022603.1\|WP_095444889.1\|1044603_1045851_+\|sugar-MFS-transporter	unknown	unknown	gnl\|CDD\|340952
NZ_CP022603.1\|WP_095444881.1\|1036126_1037119_-\|bifunctional-riboflavin-kinase/FAD-synthetase	unknown	unknown	gnl\|CDD\|235536
NZ_CP022603.1\|WP_095444878.1\|1031540_1034456_-\|isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237514
NZ_CP022603.1\|WP_095444891.1\|1046602_1047730_-\|ATP-phosphoribosyltransferase-regulatory-subunit	unknown	unknown	gnl\|CDD\|183413
NZ_CP022603.1\|WP_095444890.1\|1045907_1046603_-\|ATP-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|237438
NZ_CP022603.1\|WP_095444888.1\|1043996_1044398_+\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NZ_CP022603.1\|WP_095445710.1\|1047737_1049246_-\|histidine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234586
NZ_CP022603.1\|WP_095444879.1\|1034489_1034915_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022603.1\|WP_095444886.1\|1041388_1041949_+\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|377026
NZ_CP022603.1\|WP_095444880.1\|1034887_1035775_-\|MipA/OmpV-family-protein	unknown	unknown	gnl\|CDD\|226236
NZ_CP022603.1\|WP_024897733.1\|1042069_1042330_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022603.1\|WP_095444877.1\|1030626_1031301_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022603.1\|WP_095444885.1\|1040905_1041307_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NZ_CP022603.1\|WP_095444887.1\|1042505_1043897_+\|class-II-fumarate-hydratase	unknown	unknown	gnl\|CDD\|234779
NZ_CP022603.1\|WP_095445709.1\|1027239_1029162_-\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|224108
NZ_CP022603.1\|WP_095444874.1\|1029353_1029827_+\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|223663
NZ_CP022603.1\|WP_095444892.1\|1049356_1049974_-\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
NZ_CP022603.1\|WP_095444883.1\|1038523_1038820_+\|co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988
NZ_CP022603.1\|WP_095444882.1\|1037143_1038004_-\|TIGR01459-family-HAD-type-hydrolase	unknown	unknown	gnl\|CDD\|319827

Protein	Function_ID	Function_description	E-value
NZ_CP022603.1\|WP_095444875.1\|1029835_1030396_-\|cytochrome-b	gnl\|CDD\|225580	COG3038, CybB, Cytochrome B561 [Energy production and conversion].	5.67701e-45
NZ_CP022603.1\|WP_095444889.1\|1044603_1045851_+\|sugar-MFS-transporter	gnl\|CDD\|340952	cd17394, MFS_FucP_like, Fucose permease and similar proteins of the Major Facilitator Superfamily of transporters. This subfamily is composed of L-fucose permease (also called L-fucose-proton symporter) and similar proteins such as glucose/galactose transporter and N-acetyl glucosamine transporter NagP. L-fucose permease facilitates the uptake of L-fucose across the boundary membrane with the concomitant transport of protons into the cell; it can also transport L-galactose and D-arabinose. Glucose/galactose transporter functions in the uptake of of glucose and galactose. The FucP-like subfamily belongs to the bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4 (FucP/MFSD4) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.50848e-162
NZ_CP022603.1\|WP_095444881.1\|1036126_1037119_-\|bifunctional-riboflavin-kinase/FAD-synthetase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	1.17008e-149
NZ_CP022603.1\|WP_095444878.1\|1031540_1034456_-\|isoleucine--tRNA-ligase	gnl\|CDD\|237514	PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional.	0
NZ_CP022603.1\|WP_095444891.1\|1046602_1047730_-\|ATP-phosphoribosyltransferase-regulatory-subunit	gnl\|CDD\|183413	PRK12295, hisZ, ATP phosphoribosyltransferase regulatory subunit; Provisional.	2.07765e-153
NZ_CP022603.1\|WP_095444890.1\|1045907_1046603_-\|ATP-phosphoribosyltransferase	gnl\|CDD\|237438	PRK13583, hisG, ATP phosphoribosyltransferase.	7.69817e-134
NZ_CP022603.1\|WP_095444888.1\|1043996_1044398_+\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	6.47985e-20
NZ_CP022603.1\|WP_095445710.1\|1047737_1049246_-\|histidine--tRNA-ligase	gnl\|CDD\|234586	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed.	4.61403e-157
NZ_CP022603.1\|WP_095444886.1\|1041388_1041949_+\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|377026	pfam03358, FMN_red, NADPH-dependent FMN reductase.	7.07096e-33
NZ_CP022603.1\|WP_095444880.1\|1034887_1035775_-\|MipA/OmpV-family-protein	gnl\|CDD\|226236	COG3713, OmpV, Outer membrane protein V [Cell envelope biogenesis, outer membrane].	5.08931e-68
NZ_CP022603.1\|WP_095444885.1\|1040905_1041307_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	3.50762e-41
NZ_CP022603.1\|WP_095444887.1\|1042505_1043897_+\|class-II-fumarate-hydratase	gnl\|CDD\|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0
NZ_CP022603.1\|WP_095445709.1\|1027239_1029162_-\|pseudouridine-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	7.68262e-82
NZ_CP022603.1\|WP_095444874.1\|1029353_1029827_+\|nucleoside-deaminase	gnl\|CDD\|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	4.52561e-62
NZ_CP022603.1\|WP_095444892.1\|1049356_1049974_-\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	1.18412e-44
NZ_CP022603.1\|WP_095444883.1\|1038523_1038820_+\|co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	1.50528e-52
NZ_CP022603.1\|WP_095444882.1\|1037143_1038004_-\|TIGR01459-family-HAD-type-hydrolase	gnl\|CDD\|319827	cd07525, HAD_like, uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily. The haloacid dehalogenase-like (HAD) hydrolases are a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members include 2-L-haloalkanoic acid dehalogenase (C-Cl bond hydrolysis), azetidine hydrolase (C-N bond hydrolysis); phosphonoacetaldehyde hydrolase (C-P bond hydrolysis), phosphoserine phosphatase and phosphomannomutase (CO-P bond hydrolysis), P-type ATPases (PO-P bond hydrolysis) and many others. Members are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	5.1767e-87

>NZ_CP022603.1|WP_095444883.1|1038523_1038820_+|co-chaperone-GroES
MADIKFRPLHDRVVVRRVESEAKTAGGIIIPETAKEKPQEGEIVAVGTGARDEAGKLIALDVKAGDKVLFGKWSGTEVKIGGEDLLIMKESDILGIVG
>NZ_CP022603.1|WP_095444882.1|1037143_1038004_-|TIGR01459-family-HAD-type-hydrolase
MKLPERLPERLDDLTDRYDAIFCDVWGVLHNGEVAFAPAVAALKRARAKGLTVVLVTNAPRPYPSVIAQMTLLGVPEDAYDRVVTSGDVTRDLIIEGPRKVFHIGSERETVIYDGLDVELVEEFEASGVVCTGLYDDETETPENYTELLQRLRSRNLPFICANPDIMVERGPRLIWCAGALARDFGQLGGRTLIAGKPHRPIYEAASKAVEEVRGHAVDRKRILGIGDGVLTDVKGAADYGLDVLYISGGVHAADYAADGNVDFDKMNAFLQKHGHSPIASLYALV
>NZ_CP022603.1|WP_095444881.1|1036126_1037119_-|bifunctional-riboflavin-kinase/FAD-synthetase
MTKPVFQRLSGTDALPLTLRDCVVAIGNFDGVHRGHQAVLERALELAHRDGLPAVVLTFEPHPRSFFKPNEPIERLTDAVEKAEILRLMGFDAVVEQPFTADFSAQSAEDFVRNILVERLHANRVVTGYDFHFGKGRRGTPQFLEEAGQSSGFSVSLVDAFGDEGGNLVSSTRVRALLCEGEVAEAAGLLGYRYRVSGEVIHGKKLGRTLGFPTANMTIDDHVSLKHGIYAVRFRRADGILHDGVASFGRRPTVASDGKPLLETFVFDFSGDLYGEVAEVSFFGYLRGEVKFDGLDPLIEQMKRDEEEARALLAGAKPLSELDRLLSFAA
>NZ_CP022603.1|WP_095444880.1|1034887_1035775_-|MipA/OmpV-family-protein
MPAKFTGHCLSEFHVTRIVPLAFVTGAALFVGPLSVVAADMQQTDIYAAEEVKPARKYFWSGDWYLKVGAAGLVAPKFEGSNKYKFSAQPLVSLGRQGEAERFSSRNDNVSFAVIDTDRFRVGATGKLLFKRDTDIDGIHETKFGGEAGGFVDVYPTDWLRFRGEVRQGIRAHKGVVADVAADAFYDVTPVIRVSAGPRATFASKDYFKTYYGVTAEEAVASGVKEYRPGGGWESVGVGGAITWKATDKIDTSLFGEYSRLQGPAKDSSIVKQHGSRDQFMVGIAATYRFDFSLD
>NZ_CP022603.1|WP_095444879.1|1034489_1034915_+|hypothetical-protein
MAGEDAESSGGCNIQPENSKGCEAQPVVPGPSCHALHFAQCHQGLEEGRANNSYGRDDMPKIRHHGHAFSNDLRRNKEAGRNKLAALPSKSLQIEHVSQKWEPVLGQRHAEKQIDRAFPTIYLKLEILWVCFDQSSEKSKR
>NZ_CP022603.1|WP_095444878.1|1031540_1034456_-|isoleucine--tRNA-ligase
MTETTAKIDYSKTLNLPQTEFPMRAGLPAREPVFVQRWEEMNLYKKLREDAKDRPLYVLHDGPPYANGNIHIGHALNKILKDVITRSFQMRGFNSNYVPGWDCHGLPIEWKIEEKYRAQGKNKDEVAINEFRKECREFAAGWIKVQSEEFKRLAICGDFENPYTTMNFHAEARIAGELLKFAATGQLYRGSKPVMWSVVERTALAEAEVEYHDIESDMIWVKFPVADAGDLVGSSVVIWTTTPWTIPGNRAVAYSTRVAYGLYEVTAAENDFGPRPGEKLIFADKLADECAKKAKLEFKRLRDVTGEELSKNVLDHPLKGFGGGYEFVVPLVSGDHVTDDAGTGFVHTAPSHGREDFEAWMDSARELEARGIDPSIPFPVGDDGYYTKDAPGFGPDREGGPARVIDDNGKKGDANDSVIKQLIATDKLFARGRLKHSYPHSWRSKKPVIFRNTPQWFVYMDKNLGDGTTLRSRSLKAIEDTRFVPAAGQNRLRAMIEGRPDWVLSRQRAWGVPICVFADEEGNILQDDAVNKRILEAFEAEGADAWFAEGARERFLGSRANENWTQVRDILDVWFDSGSTHTFTLEDRPDMKWPADVYLEGSDQHRGWFHSSLLESCGTRGRAPYNAVVTHGFTMDENGKKMSKSLGNTVTPQDVIKDSGADILRLWVMTTDYWEDQRLGKSIIQTNIDAYRKLRNTIRWMLGTLAHDEGENVPHAELPELERLMLHRLAELDEVVRSGYDAFDFKRIARALIDFMNVELSAFYFDIRKDALYCDAPSSVRRKAALQTVREIFDRVTTWLAPMLPFTMEEAWLDRYPQSVSVHLEQFRKTPAEWRDDVLAEKWRKVRNVRRVVTGALELERADKRIGSSLEAAPVVYIADKSLVDSLEGLDFAEICITSGIGVTDAEAPADAFTLDDVKGVAVVPVRAEGGKCARSWRYTTDVGSDPEFPEVSARDAAALHELKALGRLSA
>NZ_CP022603.1|WP_095444877.1|1030626_1031301_-|hypothetical-protein
MKIEGRVLVLMTAVAGLALSGCVSSPTYGTDKTASAQLLDDVSNMASFGQGKKKDRIDYKPRPDLVRPGQGDKGALPAPQESLASAGDPSWPESPEQRRKRLRDEITANRDNPNFVSPVEQDVPVASNVRASLPSGASRREDYESRTPTFDPAKVAELKKQRAEQTQGTSTNRRYLSEPPLGYRQPASTAAVGDMGQDEAQKERERKKAAGGGGKSWRDLLPWN
>NZ_CP022603.1|WP_095444875.1|1029835_1030396_-|cytochrome-b
MHKTNSFWDGPDGYGVISRMLHWLMAALFLWQFISAILRIFIKETPLYNFFWSAHFTIGFSLLVLVLLRGIWGLLNLFSRPHKPGVMGKLAGFGHLVIYALMFAVPALALLRSYGNGRGFSVFGIQLFEQTGVQNAALTAPGNALHGLLGWVLLAAIVGHVLMALIHHFALRDNTLRHMTRHRVIH
>NZ_CP022603.1|WP_095444874.1|1029353_1029827_+|nucleoside-deaminase
MKKVADISAPKVATPMEIALEEAKSAALRGEVPIGAVIVHEGKIIARAGNRTRELNDVTAHAEVLVIRQAGEALKSERLLDCDLYVTLEPCAMCAAAISFARIRRLYYGAADPKGGAVEYGPRFYTQPTCHHVPEIYAGFSEEKSQKILRDFFRDKR
>NZ_CP022603.1|WP_095445709.1|1027239_1029162_-|pseudouridine-synthase
MSTEDDNKGGRRPPHGRGEGRGDRPDSTRGERGERGSGPREAGSRIDRPRDDRPRRDDDRGGPRKFGSRETQEGEDTSERIAKRLARAGIASRREAETMIAAGRISVNGKVLESPAVNVKRTDVITVDGKQLKQAERTRLWLYNKPAGLVTTNRDPEGRPTVFEALPAEMPRVLSVGRLDINTEGLLLLTNDGGLSRVLELPSTGWLRRYRVRAHGKVTQAQLDELKNGIAVEGIFYGSIEATLEREQGANVWISIGLREGKNREVKNILGALGLTVGRLIRVSFGPFQLGDLEEGAVREIRGRILRDQLGEKLVEESGADFDAPVLNEFSNTVVQGRTRREMEQKEPEGEYRRQPREREWISSQPERRKREEKKEDKVEPRRRGNSNVWMAPGARPQGEKAAAQKAARAESRGARASRSDGDLQSRPRRSADGDQRREAGRDDRPRRSEGRFDKQGSHSGNRPEGRSDNRSGPRAPRAEGDFQSRPRRFGDGDQRREEGRDDRPRRFEGRSEGRPEARAPRPEGRDDRKQERRPGKRERAELKNEGGERSSGGYEGRSFGKPSGPRSEGRFGGGNADRGPRSSGPRSGGGEGRGPSKGPGGFGKGSDRGGSGGKPGNGRSGDGKPRGGKPGGGGADRRR
>NZ_CP022603.1|WP_095444885.1|1040905_1041307_-|helix-turn-helix-transcriptional-regulator
MKPGDFKETSACKAVTDILSRVGDKWSVLIVSYLGNRPMRFNEIRRTVDGISQKMLTTTLRNLERDGFVSRTMFPTIPPKVEYELTELGQDLLKPVRALGEWAIANEVQVMMARARYDARLSGDDVAHADAAE
>NZ_CP022603.1|WP_095444886.1|1041388_1041949_+|NAD(P)H-dependent-oxidoreductase
MSKLKVAVIVGSTREQRFSPVSAEWIAKVAAERPEFDVEILDLADYPMGFYGDTTTTTAQAETADKWKTKLREFDAYILTAAEYNHAPTAVLKNAIDYGDWIQKPMGFVGHGGVGGARAVEQLRMIAVEMSSMSVKTGVHILFPDYLAVVKKENALDDFPHLAEAAKNMLDQLAWWGHALKAARAG
>NZ_CP022603.1|WP_024897733.1|1042069_1042330_+|hypothetical-protein
MRKELPIATAPKDGRKVTVVWIDDDDQRNESVGQYRSLDKLKAGGGDWDETDTGWWIFTDSKTQQKVEPTAWISETDDGDDDNEDN
>NZ_CP022603.1|WP_095444887.1|1042505_1043897_+|class-II-fumarate-hydratase
MTATRTETDTFGPIDVAADRYWGAQTQRSLHNFKIGGERMPLPLVHALGVVKRAAAETNIALGKLDPVLGQVIAVAASEVIEGKLDDHFPLVVWQTGSGTQSNMNANEVISNRAIELLGGELGSKKPVHPNDHVNMSQSSNDSFPTAIHIATAVEAVNRLYPALTHLTKALKAKEEAFKDIIKIGRTHTQDATPVTLGQEFSGYRAALEYARQRIEQSLADVFLLAQGGTAVGTGLNAPKGFDTGFADAVSEITGLSFKTAPNKFEALASHGALTNFHGSLNALAADLFKTANDIRFLGSGPRSGLGELSLPENEPGSSIMPGKVNPTQAEALTMVATQVFGNQTAVTVAASQGHFELNVFKPVIAYNVLQSIRILSDAMVSFADHCVEGIEANEDRIKDLLERSLMLVTALAPAIGYDNAAKIAKTAHKNGTTLREEALKSGHVSEEDYDRLVRAEKMIAPE
>NZ_CP022603.1|WP_095444888.1|1043996_1044398_+|DoxX-family-protein
MSSITPQSNGLATLVARVFLSILFILAGFSKLTAISGTAGYFAGLGLPVPTVTAVLVGLVEFVGGLAILVGFQTRITAAIVALFTIGATLVAHMNFAEGMNAMMAQKNLAIAGGLILLALQGAGSISIDAKRG
>NZ_CP022603.1|WP_095444889.1|1044603_1045851_+|sugar-MFS-transporter
MAVSPATNSQLRADAHSGKNYNFALASLTMLFFMWGFITCLNDILIPHLKGVFQLNYFQSMLIQFCFFGAYFIVSLPAGALVKRISYKWGIVTGLVVAAIGCALFIPAASYRVYALFLGALFVLASGVTILQVAANPYVTVLGTPETAASRLTLTQAFNSLGTTVAPLFGAFLILSAATTDAANSAEADAVQFPYLLLALAFAVLAVVFAILKLPDVQEEEAALSSKEEGSAWQYRHLVLGAVGLFVYVGAEVSIGSFLVNFLSDPSIAGLTEADAAHHVTYFWGGAMVGRFIGSVAMRYIDDGKALAFNAAIAIVLLLITVATTGHVAMWSVLAIGLFNSIMFPTIFSLALHGLGKHTSQGSGILCLAIVGGAIVPLIQGALADTVGIHLAFLMPIVCYIYIAYYGLIGSKPKI
>NZ_CP022603.1|WP_095444890.1|1045907_1046603_-|ATP-phosphoribosyltransferase
MTVTLALPSKGRLKEQTLAVLEKAGYKVVLPDDSRNYRARVEGENDIDILFLSASEIARELGYGSVDLGVTGEDLVRETLAHADERVAIEAELGFGHADVVVAVPTVWRDVTTMADLDDVAADFRQRHGRRLRIATKYWRLTQQFFSQKHGIQVYRIVESLGATEGAPAAGSADMIVDITSTGSTLTANHLKVLEDGIILRSQACLVSARGSETNTRAAEVVARIREGLAG
>NZ_CP022603.1|WP_095444891.1|1046602_1047730_-|ATP-phosphoribosyltransferase-regulatory-subunit
MTGSRTSPIFATLRGQLDASEAELVDIPVIQPADPFLDMAGEDLRRRIFLTESENGDSLCLRPEFTIPVCRNHIALNAATPKRYAYLGEVFRQRRDGAAEFLQAGIEDLGATDEAASDARSIGDALACVQSAAVDVKLEIVLGDQAVFAGMLKALGLPQGWRKKLLRAFGDEHTMESAFAELTGEQRNDPLPEQLAGLVAEGDEAELARMLEAEMLEAGISPGAGRTPAEIARRLIEKEDLAATRFPSSALEVLKRFLATRVSLEAASITLRAFAADNALDLNAVLQKFEARTDAIIAAGISAEDIVYDASFGRPLDYYTGLVYEIRQAGSDKDMVLAGGGRYDRLLTMLGASENIPGVGFSIWLDRLQALSGEQ
>NZ_CP022603.1|WP_095445710.1|1047737_1049246_-|histidine--tRNA-ligase
MADKADKMKARLPRGFVDRVPDDLRATEKMTATIREVYDLYGFEPVETPLIEYTDALGKFLPDQDRPNEGVFSFQDDDEQWLSLRYDLTAPLARFVAENYESLPKPYRSYRNGWVFRNEKPGPGRFRQFMQFDADTVGAPNVSADAEMCMMMADTVERLGIQRGDYVIRVNNRKVLDGVLEAIGLAGDENAGKRLNVLRAIDKLDKFGAEGVRLLLGKGRLDESGDFTKGALLDDAAVEKVLAFTAAGGASGAETIANLKAVVAGNAKGEEGVQELADMEALFDAGGYEGRVKIDPSVVRGLEYYTGPVFEAELLFDVTNEDGQKVVFGSVGGGGRYDGLVSRFRGEPVPATGFSIGVSRLMTALKNLGKLDVSDVVGPVVVLVMDKDAASLGRYQKMVSDLRQSGIRAEMYVGGSGMKAQMKYADRRDAPCVIIQGSQEREAGEVQIKDLIEGKRISAEIVDNATWRESRPAQVTVKEEGIVEAVREILDAQARDRAQQIK
>NZ_CP022603.1|WP_095444892.1|1049356_1049974_-|LysE-family-translocator
MDLTSLVAFAGILVVAAGTPGPNIGALVARVLSRGHKGVFPFMFGLWLGDAIWLSLAVWGLSALAHSFHTVFLVLKYLGVAYLIYLSWKMWFAPVAESVDEDVVPRHGEAKKLFFSALAVTLGNPKIMVFYVAILPTIIDITNVSIVGWMELLLVMFVVLALVDSAWVLLATQARRLLRSPRAMRIANRTSAGMMAGAAVAIATR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1861778 : 1905307

Catovirus(12.5%)

transposase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_167388260.1\|1861778_1863392_-\|holin	choline dehydrogenase	A0A1V0S9J5	Catovirus	1.1e-43	26.4
WP_167388261.1\|1863535_1864597_-	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA
WP_095445519.1\|1864684_1864999_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_095445520.1\|1865041_1866289_-	cytochrome P450	NA	NA	NA	NA
WP_095445521.1\|1866648_1867542_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_095445522.1\|1867551_1868460_+	isocitrate lyase/PEP mutase family protein	NA	NA	NA	NA
WP_095445523.1\|1868515_1870039_+	aldehyde dehydrogenase	NA	NA	NA	NA
WP_095445524.1\|1870459_1871338_+	transporter	NA	NA	NA	NA
WP_167388262.1\|1871615_1871885_+	hypothetical protein	NA	NA	NA	NA
WP_095445478.1\|1871874_1872651_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	8.0e-56	46.3
WP_157743440.1\|1874374_1874635_+	hypothetical protein	NA	NA	NA	NA
WP_095445525.1\|1874652_1875837_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA
WP_157743441.1\|1875978_1876863_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_095445527.1\|1877041_1878565_-	hypothetical protein	NA	NA	NA	NA
WP_095445528.1\|1878567_1879050_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA
WP_157743442.1\|1879148_1880120_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_095445530.1\|1880563_1881337_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_095445531.1\|1881603_1882839_+	thiolase family protein	NA	NA	NA	NA
WP_095445532.1\|1882850_1884386_+	AMP-binding protein	A0A2H4PQM9	Staphylococcus_phage	1.0e-25	23.0
WP_095445533.1\|1884382_1885240_+	TIGR03084 family protein	NA	NA	NA	NA
WP_095445534.1\|1885371_1886298_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_095445535.1\|1886269_1886530_-	DUF2274 domain-containing protein	NA	NA	NA	NA
WP_095445536.1\|1886531_1887746_-	TrbI/VirB10 family protein	NA	NA	NA	NA
WP_095445537.1\|1887742_1888723_-	P-type conjugative transfer protein TrbG	NA	NA	NA	NA
WP_095445538.1\|1888719_1889409_-	conjugal transfer protein TrbF	NA	NA	NA	NA
WP_095445539.1\|1889408_1890731_-	P-type conjugative transfer protein TrbL	NA	NA	NA	NA
WP_095445540.1\|1890733_1891039_-	putative entry exclusion protein TrbK-alt	NA	NA	NA	NA
WP_095445541.1\|1891058_1891826_-	P-type conjugative transfer protein TrbJ	NA	NA	NA	NA
WP_095445542.1\|1891822_1894261_-	conjugal transfer protein TrbE	NA	NA	NA	NA
WP_095445543.1\|1894275_1894557_-	conjugal transfer protein	NA	NA	NA	NA
WP_095445544.1\|1894556_1894889_-	TrbC/VIRB2 family protein	NA	NA	NA	NA
WP_095445545.1\|1894885_1895827_-	P-type conjugative transfer ATPase TrbB	NA	NA	NA	NA
WP_157743443.1\|1895949_1896336_+\|transposase	transposase	NA	NA	NA	NA
WP_138787576.1\|1896332_1896686_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_095445546.1\|1897234_1898773_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.5e-45	36.7
WP_095445547.1\|1898901_1900434_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_095445548.1\|1900423_1901203_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	4.8e-32	35.5
WP_095445773.1\|1902266_1902653_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_095445549.1\|1902863_1903301_+\|transposase	transposase	A0A0P0ZBP6	Stx2-converting_phage	7.8e-08	34.8
WP_095445550.1\|1903293_1903647_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	1.9e-20	46.2
WP_095445774.1\|1903732_1905307_+\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	2.1e-58	33.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP022604

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP022604_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022604_1

390083-390161

Orphan

Consensus_repeat	Method
AAAGCGCATCCCGAAAAGTGTAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP022604_1

>merge|NZ_CP022604|1|390083-390161|CRISPRCasFinder
AAAGCGCATCCCGAAAAGTGTAAGACGGTTTTCGGCAAAGATGCGCGTAGAGAGAAAAGCGCATCCCGAAAAGTGTGAA

>NZ_CP022604|1|1|390083-390161|CRISPRCasFinder
AAAGCGCATCCCGAAAAGTGTAAG	ACGGTTTTCGGCAAAGATGCGCGTAGAGAGA
AAAGCGCATCCCGAAAAGTGTGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022604.1\|WP_095446078.1\|390222_391458_+\|urate-hydroxylase-PuuD	unknown	unknown	gnl\|CDD\|226271
NZ_CP022604.1\|WP_095446077.1\|389068_389983_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP022604.1\|WP_095446076.1\|388005_388833_+\|xanthine-dehydrogenase-accessory-protein-XdhC	unknown	unknown	gnl\|CDD\|274366
NZ_CP022604.1\|WP_095446081.1\|394818_396603_+\|glyoxylate-carboligase	unknown	unknown	gnl\|CDD\|183066
NZ_CP022604.1\|WP_095446080.1\|393824_394643_-\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
NZ_CP022604.1\|WP_095446068.1\|376855_378259_+\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240536
NZ_CP022604.1\|WP_095446070.1\|379696_380851_+\|porin	unknown	unknown	gnl\|CDD\|308243
NZ_CP022604.1\|WP_095446079.1\|391460_392765_+\|guanine-deaminase	unknown	unknown	gnl\|CDD\|236419
NZ_CP022604.1\|WP_095446085.1\|399880_402139_-\|cadmium-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319782
NZ_CP022604.1\|WP_095446082.1\|396620_397415_+\|hydroxypyruvate-isomerase	unknown	unknown	gnl\|CDD\|226149
NZ_CP022604.1\|WP_095446074.1\|384157_385636_+\|xanthine-dehydrogenase-small-subunit	unknown	unknown	gnl\|CDD\|226977
NZ_CP022604.1\|WP_095446071.1\|381267_382089_-\|(S)-ureidoglycine-aminohydrolase	unknown	unknown	gnl\|CDD\|183011
NZ_CP022604.1\|WP_095446075.1\|385646_388001_+\|xanthine-dehydrogenase-molybdopterin-binding-subunit	unknown	unknown	gnl\|CDD\|274367
NZ_CP022604.1\|WP_095447842.1\|398449_399745_+\|glycerate-kinase	unknown	unknown	gnl\|CDD\|225254
NZ_CP022604.1\|WP_095446073.1\|383786_384152_+\|hydroxyisourate-hydrolase	unknown	unknown	gnl\|CDD\|225226
NZ_CP022604.1\|WP_095446084.1\|399710_399884_-\|cbb3-type-cytochrome-oxidase-assembly-protein-CcoS	unknown	unknown	gnl\|CDD\|225738
NZ_CP022604.1\|WP_095446069.1\|378624_379146_-\|invasion-protein	unknown	unknown	gnl\|CDD\|227647
NZ_CP022604.1\|WP_095445838.1\|392994_393749_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129
NZ_CP022604.1\|WP_095446072.1\|382103_383531_-\|allantoinase-PuuE	unknown	unknown	gnl\|CDD\|211797
NZ_CP022604.1\|WP_095446083.1\|397437_398322_+\|2-hydroxy-3-oxopropionate-reductase	unknown	unknown	gnl\|CDD\|185019

Protein	Function_ID	Function_description	E-value
NZ_CP022604.1\|WP_095446078.1\|390222_391458_+\|urate-hydroxylase-PuuD	gnl\|CDD\|226271	COG3748, COG3748, Predicted membrane protein [Function unknown].	0
NZ_CP022604.1\|WP_095446077.1\|389068_389983_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.59065e-72
NZ_CP022604.1\|WP_095446076.1\|388005_388833_+\|xanthine-dehydrogenase-accessory-protein-XdhC	gnl\|CDD\|274366	TIGR02964, conserved_hypothetical_protein, xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products. [Protein fate, Protein folding and stabilization, Purines, pyrimidines, nucleosides, and nucleotides, Other].	7.41007e-114
NZ_CP022604.1\|WP_095446081.1\|394818_396603_+\|glyoxylate-carboligase	gnl\|CDD\|183066	PRK11269, PRK11269, glyoxylate carboligase; Provisional.	0
NZ_CP022604.1\|WP_095446080.1\|393824_394643_-\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	1.94602e-80
NZ_CP022604.1\|WP_095446068.1\|376855_378259_+\|MATE-family-efflux-transporter	gnl\|CDD\|240536	cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Vibrio cholerae NorM and functions most likely as a multidrug efflux pump, removing xenobiotics from the interior of the cell. The pump utilizes a cation gradient across the membrane to facilitate the export process. NorM appears to bind monovalent cations in an outward-facing conformation and may subsequently cycle through an inward-facing and outward-facing conformation to capture and release its substrate.	4.25073e-167
NZ_CP022604.1\|WP_095446070.1\|379696_380851_+\|porin	gnl\|CDD\|308243	pfam02530, Porin_2, Porin subfamily. This family consists of porins from the alpha subdivision of Proteobacteria the members of this family are related to pfam00267. The porins form large aqueous channels in the cell membrane allowing the selective entry of hydrophilic compounds this so called 'molecular sieve' is found in the cell walls of gram negative bacteria.	7.57824e-102
NZ_CP022604.1\|WP_095446079.1\|391460_392765_+\|guanine-deaminase	gnl\|CDD\|236419	PRK09228, PRK09228, guanine deaminase; Provisional.	0
NZ_CP022604.1\|WP_095446085.1\|399880_402139_-\|cadmium-translocating-P-type-ATPase	gnl\|CDD\|319782	cd02092, P-type_ATPase_FixI-like, Rhizobium meliloti FixI and related proteins; belongs to P-type heavy metal-transporting ATPase subfamily. FixI may be a pump of a specific cation involved in symbiotic nitrogen fixation. The Rhizobium fixI gene is part of an operon conserved among rhizobia, fixGHIS. FixG, FixH, FixI, and FixS may participate in a membrane-bound complex coupling the FixI cation pump with a redox process catalyzed by FixG, an iron-sulfur protein. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NZ_CP022604.1\|WP_095446082.1\|396620_397415_+\|hydroxypyruvate-isomerase	gnl\|CDD\|226149	COG3622, Hfi, Hydroxypyruvate isomerase [Carbohydrate transport and metabolism].	3.78455e-150
NZ_CP022604.1\|WP_095446074.1\|384157_385636_+\|xanthine-dehydrogenase-small-subunit	gnl\|CDD\|226977	COG4630, XdhA, Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism].	0
NZ_CP022604.1\|WP_095446071.1\|381267_382089_-\|(S)-ureidoglycine-aminohydrolase	gnl\|CDD\|183011	PRK11171, PRK11171, (S)-ureidoglycine aminohydrolase.	0
NZ_CP022604.1\|WP_095446075.1\|385646_388001_+\|xanthine-dehydrogenase-molybdopterin-binding-subunit	gnl\|CDD\|274367	TIGR02965, xanthine_dehydrogenase, xanthine dehydrogenase, molybdopterin binding subunit. Members of the protein family are the molybdopterin-containing large subunit (or, in, eukaryotes, the molybdopterin-binding domain) of xanthine dehydrogenase, and enzyme that reduces the purine pool by catabolizing xanthine to urate. This model is based primarily on bacterial sequences; it does not manage to include all eukaryotic xanthine dehydrogenases and thereby discriminate them from the closely related enzyme aldehyde dehydrogenase. [Purines, pyrimidines, nucleosides, and nucleotides, Other].	0
NZ_CP022604.1\|WP_095447842.1\|398449_399745_+\|glycerate-kinase	gnl\|CDD\|225254	COG2379, GckA, Putative glycerate kinase [Carbohydrate transport and metabolism].	0
NZ_CP022604.1\|WP_095446073.1\|383786_384152_+\|hydroxyisourate-hydrolase	gnl\|CDD\|225226	COG2351, COG2351, Transthyretin-like protein [General function prediction only].	5.13566e-60
NZ_CP022604.1\|WP_095446084.1\|399710_399884_-\|cbb3-type-cytochrome-oxidase-assembly-protein-CcoS	gnl\|CDD\|225738	COG3197, FixS, Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism].	1.99404e-17
NZ_CP022604.1\|WP_095446069.1\|378624_379146_-\|invasion-protein	gnl\|CDD\|227647	COG5342, COG5342, Invasion protein B, involved in pathogenesis [General function prediction only].	6.86978e-46
NZ_CP022604.1\|WP_095445838.1\|392994_393749_-\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	3.17857e-26
NZ_CP022604.1\|WP_095446072.1\|382103_383531_-\|allantoinase-PuuE	gnl\|CDD\|211797	TIGR03212, uraD_N-term-dom, putative urate catabolism protein. This model represents a protein that is predominantly found just upstream of the UraD protein (OHCU decarboxylase) and in a number of instances as a N-terminal fusion with it. UraD itself catalyzes the last step in the catabolism of urate to allantoate. The function of this protein is presently unknown. It shows homology with the pfam01522 polysaccharide deacetylase domain family.	0
NZ_CP022604.1\|WP_095446083.1\|397437_398322_+\|2-hydroxy-3-oxopropionate-reductase	gnl\|CDD\|185019	PRK15059, PRK15059, 2-hydroxy-3-oxopropionate reductase.	3.46672e-134

>NZ_CP022604.1|WP_095446077.1|389068_389983_-|LysR-family-transcriptional-regulator
MSYLDNLRVFVRVVELGNLSAAGRDQRASPAVASNRIKELEKHLGVRLFNRTTRKLTPTEHGRIFYDGAMKILEAVDEAEAAVAELAKNPKGSIRITAPLGLGRRLIASGIPEFHDKYPDIEVRLRLSDHEIDIMSESVDVAFKLGVLENSNLRMRGILNCERVICAAPDYLEKHGTPQSPEELLGDQHDCLLLRFPGSKEFYWSLQTPEGLRKFEVTGPYDSDDGDVLTQWALGGRGIINKPLFEVKEYLRDGRLIPILASTPPASIQLAAIYPHKRFQDPKVRLIIDFMTERCQRLIREALA
>NZ_CP022604.1|WP_095446076.1|388005_388833_+|xanthine-dehydrogenase-accessory-protein-XdhC
MPGARDDIRAFLNKRSDSVLIEVTDVRGSAPRDAGAWMLVARDMIFRTIGGGQLEYMAIDHARKILLGGRDSSMDVPLGPEIGQCCGGRVGLSFRRVNRGLAEELIAKVDAEISTRPHVYVFGAGHVGDALAYSLSLTPVRVILVDTREAELMAVDAPGVETCLAALPEQVVRSAPPGSAFIVLTHDHALDFLIVAEALQRGDAVYVGMIGSKTKKATFKTWLKREIGRDDLFNNLICPVGGTVVKDKRPEVIAALAAAEILTAVLVSSKVLQPA
>NZ_CP022604.1|WP_095446075.1|385646_388001_+|xanthine-dehydrogenase-molybdopterin-binding-subunit
MNKHPANALKAARIKGGVATDQRHDSAHKHVTGEAVYIDDIPEPEGTLHIGVGFSTVAHAKINAVDLSAVRAAPGVVDVLTYKDVPGENDVSPSGMHDDPIFAVDNIQFHGQPIFAVVARTRDQARRAARLAKVEYEEMPGLFSISGLDGYKDKLVFTPLTLNRGDARKAIDDAPRKVKARMLVGGQDHFYLEGQASLAIPGEDDDVTIYCSTQGPSETQHLVAHALGVPSHSVTVEVRRMGGGFGGKETQANQWAAIAAIAAKKHKRAVKVRLDRDEDMTSTGKRHDFMIDYEVGFDDEGNILGVDYLFALNAGFSADLSGPVGDRALFHCDNAYFFPAVHAQSAPLYTNTVSNTAFRGFGGPQGMVGAERVIEEVAFAVGKDPLEIRKLNFYDAMGTDGARNVTPYHQKVEDCIIQRIVAELEESADYAQRREAIREFNAKSRYVKRGMSLTPVKFGISFTKTESNQAGALVHVYNDGSVHMNHGGTEMGQGLHLKVAQVVAEEFQIDLDRVKITATTTAKVPNTAPTAASSGADLNGMAAQDAARQIKKRLIHFAAQQHQVPEDQVVFLPNRIRVGNQEISFNDLVKQAYIGRVQLSASGHYKTPKIHWDRAKGKGHAFYYYAYGAACSEVSVDTLTGEYVVERTDILHDTGRSLNRVIDIGQVEGGFVQGMGWLTTEELVWDNKGRLRTHAPSTYKIPLASDRPKIFNVALTDWSEAYEPTIHRSKAVGEPPLPHGMSVLYALSDAVASVADHKISPRLDAPATPERVLMAIERLRSQKG
>NZ_CP022604.1|WP_095446074.1|384157_385636_+|xanthine-dehydrogenase-small-subunit
MGQAVRHSIRFLLNGETVELDRVSPTETLLDYLRLSCKLRGSKEGCGEGDCGACTVLVGKIVDDELIYESVNACIRFVGSLDSCHVVTIEHLRGSDGGLHPVQKAMIDFHGSQCGFCTPGFVMSLYGLWMRNPKPADAQIEKALQGNLCRCTGYEAIMRAARAISEYGTLIDDPLAAERAHVISQLTALRDGARVEVGSGKDRLVVPASLDDFATVYAAEAKATIVAGSTDVGLWVTKMMRDISPVIFIGHLTELRTISEEDGVITIGAGVTYTEAFSFLAKRIPALGSLINRIGGEQVRNMGTIGGNIANGSPIGDTPPPLIALNAKLTLRKGTERRTIPLEEFFIAYGKQDRQPGEFVEAVHVPVPLEGSQFAIHKISKRFEEDITATLGAFHLTLDNEGKVASIRIAYGGMAATPKRAFNVEAALTGKLWDEESVEAALESYSLDYQPLSDMRATADYRLLVAKNLLRRFYAETQGQAEPLRVPSVEAA
>NZ_CP022604.1|WP_095446073.1|383786_384152_+|hydroxyisourate-hydrolase
MGRQISGQGRLTTHVLDTVSGKPAANLRIELRRIENQQAETVREIRTNADGRCNEPLLAGDALHTGSYELLFHVGEYFGKSDDVVPFLDVVPLRFGISDEKAHYHVPLLVSPFSYSTYRGS
>NZ_CP022604.1|WP_095446072.1|382103_383531_-|allantoinase-PuuE
MSYPRNLVGYGRNTPDPCWPGGANIAVQFVVNYEEGGESCILDGDPASECLLSEIVGAQAWKAQRNLNMESIYEYGSRSGFWRLWRAFTRRNMPVTVYGVTLAMERNPEAIAAMKEADWEIASHGLRWWEYKDVPEEVEREHIREAVRLHTEITGSRPLGIYQGKPSDNTLKLVMEEGGFLYSADSYADELPYWVKGPKGPHLIVPYTLDTNDMRFATPQGFNSGDQFYTYLKDTFDVLYREGAEGAPKMMSIGLHCRLVGRPGRAAALERFLDYVQSHDKVWIAKRVDIARHWHEHHKPKSTDVMPSKASKADFVARFGGIFEHSPWIAERAYDTRLTELADSASGLHTALVRAFRAASDDEKLGVLRAHPDLAGKLAAAKRLTPESTAEQASAGLDALTDDERKTFTELNDAYTQKFGFPFIIAVKGRNKKEILDAFKRRVENTKAAEQETASEQVERIALLRLKDILPETLY
>NZ_CP022604.1|WP_095446071.1|381267_382089_-|(S)-ureidoglycine-aminohydrolase
MSRNYYAPTGGLPPQTQLLTDRAMFTEAYAVIPKGTFSDIVTSFLPFWEKTRLWIIARPLSGFAETFSQYIMEVQPGGGSDRTELDDGAQGVLFVVEGEVTVTLAGKDHVLTEGGYAYLPPKSGWRLRNNSNAVSRFHWVRKAYEHVDGLDVPEPLFLNEKNIAPTPMPDTNGAWATTRFVDPNDLRHDMHVTVVTFEPGGVIPFAETHVMEHGLYVLEGKAVYRLNQDWVEVEAGDFMWLRAFCPQACYAGGPGKFRYLLYKDVNRHMKLSR
>NZ_CP022604.1|WP_095446070.1|379696_380851_+|porin
MTIKGFLLGSAAVIAAGTGVAQAADAIVAPEPEAVEYVRVCDAYGAGYFYIPGTETCLRVSGYVRYDVTGGNDVYGRGFTDRDGAAVASDGYKRKTWDNKARFTLRFSTASETELGTLKTYAETRYDWGNGEEGASGSLRYGYIQLGGLRVGLDESAFVTFPGYLGNVINDDVILAGGYRTGLISYTFNGDNGLSAILSLEQGNNVDTDNAYGYEGVIKDYTPHVVGGVKYEQGWGKIAAVAAYDARNEEWAGKLRGDVNITDRFSLWVMGGYKSNKDKYFDVKDGSGNVVGQVRAISSFYGTWGGDWAVWGGAAFKATDQATFNAQVAYDGSSTFAATANVAYELVPGFTVTPEVSYTKWQDDKSYLKGKDAWQGMVRFQRSF
>NZ_CP022604.1|WP_095446069.1|378624_379146_-|invasion-protein
MKTYTPIGLAIGFAVISSVPAFAAPLPGGASTLQETYQDWTVSCQSEKETTVCAVRQDQSSTQTGQRVLTAELRNTAGGKVEGVILMPFGLDIAKGVTLKIDEADGPQLAFSTCLPQGCLAPVSFDAKQVAALKAGTNLNVNATALSPSQAVAFKISLKGYGAALDRIIALTK
>NZ_CP022604.1|WP_095446068.1|376855_378259_+|MATE-family-efflux-transporter
MTNTFDAGFHEPHMSSVRRWTREMATALKLGWPLILTNLSQAALTATDVIFIGRLGKDTLASALLTTSFYHTLMIFSMGLVSAVMPMIAIALGRNRHSVRDVRRTVRQGMWSAIIISIPIWIVLWHCEEIFLFLGQQPDIAARSTDFMHTLQWALLPYLFYIVLRSFFAAMEKPMWTLIVAAVAIGFNALAGWTLIFGHFGFPRMELHGAGIATTLSSTMMFLGMAFITMRHRRFRRYRLFGRFWRPDWPRFIELWRIGFPMALTFVFETSIFYAAVVMMGYIGPTAMAAHAVAIQVASLSFMVPLGFGQVATVRVGRAYGRGDTQAVAYAGWSAYALGVGFMAIMGLLMILIPRLFIGVFLNLKDPENFAVIELAVTFLALAALFQIVDGAQAVAAGMLRGLRDTRVPMYLALVGYWGVGLPFGALLAFQFGFGGSGVWLGLAAGLAIVSVLMTMRWRRSLMRIRA
>NZ_CP022604.1|WP_095446078.1|390222_391458_+|urate-hydroxylase-PuuD
MYDLAVAWDWLGFAVRWLHVITAIAWIGSSFYFIALDLGLRQRPGLPVGAYGEEWQVHGGGFYHIQKYLVAPAEMPEHLTWFKWESYATWLSGFTLLCIVYYAGADLYLVDPNVLDVSAPVAIAISIASLAFGWIAYNTICKLMLGKSDTLLMVILYCILVVMAWGYTHLFTGRAAFLHLGAFTATIMSANVFMVIIPNQKIVVADLIAGRKPDPKYGKIAKQRSTHNNYLTLPVLFLMLSNHYPLAFGTEFNWIIASLVFLMGVTIRHWFNTQHARKGSPTWTWLVTVILFIIIMWLSTVPKILTGEPEEQKVSSLQQTFISDPHFGKVRDTVLGRCAMCHAKEPGWEGIIVPPKGVVLETDRDIAAHAREIYLQAGRSHAMPPANVTGVSNEERKLLASWYESATAGAK
>NZ_CP022604.1|WP_095446079.1|391460_392765_+|guanine-deaminase
MSKLLIRGRVLTFRDEPQSLDDSQSYRYIEDGAVLVENGRIARLGDYAEISAEAGSDVKVADHRPHLILPGFIDTHIHYPQTQVVASYAANLLEWLNTYTFVAEQKFADEQHAEFIAERFLDELIRHGTTTAVAYCSVHPQSVDAYFRASQHRNMRMLGGKVMMDRNAPPALCDTAQSGYDESKQLIARWHGKDRLDYVITPRFAITSTPEQLELSGALAREHPECFIQTHLSENHDEIAFTKSLYPDSPDYLGIYEHYGLLGSKTLLGHSIHLEEREVQVMAETGAIAVFCPTSNLFLGSGLFDRDRLKASGVRMAVATDVGGGTSFSMLRTMDEGYKILQLREQRLNPFQSFYMMTLGNARALSMEDKIGTLDEGTEADIVVLDSAATSPMRLRMAAGATLEQELFLLQTVGDDRAIVETYIAGKPLKAELA
>NZ_CP022604.1|WP_095445838.1|392994_393749_-|IS5-family-transposase
MAGEFWLDDRQWAVIAPLLPTNQPGAHRTDDRRVISGIIHVLRTGCRWQDCPAVYGPSTTIYNRFHRWSAKGIWRQLFEALVQTTNRDIHMIDSTTAKAHRSAAGGKGGPEAQAIGRSRGGRSTKIHAVVDGCGRPVALRITPGQRGDAPIAIPLLEPLPPSNLCAADTAYDSNALRDFLKARGTEPVIPNNPTRKRIKPFNPIAYRRRNIIERTFCRLKDWRRVATRYDKLMLNFTATCYIAAIVTWWLN
>NZ_CP022604.1|WP_095446080.1|393824_394643_-|IclR-family-transcriptional-regulator
MEQVKAKRGRKAAENAAPSSVQVLDRSLKLLALIAENDGSTLTDLSDASHMAPSTVHRLLSSLANHGMVSHDAESGDWTIGVKAFEIGNAFRRFRKLGTLARPYLKQLMESSGETANIGVEDDGDVVFISQIESHAPMRAFFRPGRRGPIHASGIGKAVLSTWSDTEIARTLSGRTLEHFTQRTLDTLPALLKDIQATRTRGWSIDDEEHTLGMCCIAAPIFNEYGEAIAGISVSGPAVRLPKKKLEELGPMIRTTADELTRTMGGKRPEEL
>NZ_CP022604.1|WP_095446081.1|394818_396603_+|glyoxylate-carboligase
MARMRAVDAAVLVLEKEGINCAFGVPGAAINPFYSAMKARGSIRHILARHVEGASHMAEGYTRAKHGNIGLCIGTSGPAGTDMITGLYSASADSIPILCVTGQAPRARLDKEDFQAVDIAKIAAPVTKWAVTVMEPALVPFVFQKAFHIMKSGRPGPVLIDLPIDVQLAEIEFDIDTYQPMEAYKPAATRAQAEKAIAMLNEAERPLIVAGGGIINADASDLLVEFAEITGIPVIPTLMGWGVIPDDHRLMAGMCGLQTSHRYGNASLLASDTVIGIGNRWANRHTGNVETYKKDRKFIHVDIEPTQIGRVFAPDFGIVSDAGKALKQLLDVATEWKSAGKLRDWSGWAEECATRKRTMLRKTHFDQTPLKPQRVYEEMNKAFGRDTCYVTTIGLSQIAGAQFLHVYRPRNWINCGQAGPLGWTLPAALGVRAADPDRPIVALSGDYDFQFMIEELAVGAQHKLPYIHVVVNNSYLGLIRQAQRGFNMDFEVSLAFDNINASGDAEKGYGVDHVAVAEGLGCKAIRVRSPNQFAESFEQAKALMSEHQVPVVLEFILERVTNISMGADIDQVVEFEELAERGEDAPTAIAALLD
>NZ_CP022604.1|WP_095446082.1|396620_397415_+|hydroxypyruvate-isomerase
MPRFAANLTMLFNEVPFMERFALAAQAGFTGVEYLFPYDFNRHELKAALTKHNLAQVLHNLPAGNWGGGERGIAVLPDRIDEFRRGVADAIDYASTLNCSQVNCLAGIAPQGADPDVLRATFVSNLRLAAKELGKHGIRLLIEPINHYDIPGFYLNTVEQAVSIIDEVGSNNLFIQYDLYHQQRTRGELIATYERYKPLIAHVQLADNPGRNEPGTGEINYPYVFEALKAAGYKGWIGCEYKPKTTTEEGLGWFKQYEAERLSA
>NZ_CP022604.1|WP_095446083.1|397437_398322_+|2-hydroxy-3-oxopropionate-reductase
MAKIGFIGLGIMGKPMAQHLQNAGHQLFTSKHTQPPHKDLLDAGLTVLDTPKAVAAECETIILMLPDTPQVADVLFSEDGVAEGLGKGKTLIDMSSISPIETKEFAKKVRATGAEYIDAPVSGGEVGAKNASLSIMAGGAQASFDAALPLLKLMGKNITLVGDCGDGQTTKVANQIIVALNIEAVAEALVFASKAGADPAKVREALMGGFASSRILEVHGERMIKRTFDPGFRISLHQKDLNLALQGAKALGVSLPNTAMAQELFNSCAAHGDDGLDHSGLVRALERMANHDVA
>NZ_CP022604.1|WP_095447842.1|398449_399745_+|glycerate-kinase
MTAITDPKKFLTSLFDAAVAAADPELVIRANLPAKPKGRTIVIGAGKGSAQMAAAFERAWAERHENEEAPLEGVVVTRYGYGTPCKTIEIIEASHPIPDDAGLAASKRLFDAVSGLTEDDLVVALISGGGSALLPSPPEGLTLEDEIAVNKSLLASGAPISAMNAVRKHLSTIKGGRLAACAHPAKVFSLVVSDIPGDNPAFVASGPTVPDKTSRDEALKIIERYKLELPDAVLAHIKSEKAHAPKPDDKIFADNEVRVIASAAVSLEAAVKEAERHGVEAVILSDSMEGEAREVAHVHAAIAREVADRDRPFKKPVVILSGGETTVTIRAKGGKGGRNSEFLLSFALDIDSYTNIHALAADTDGIDGSEDNAGAFADGTTVSRLQKAGEDGAARLNVNDAWTAFDAIDDLFMPGPTGTNVNDLRAILILA
>NZ_CP022604.1|WP_095446084.1|399710_399884_-|cbb3-type-cytochrome-oxidase-assembly-protein-CcoS
MSGLLFLIPIALGLGVLGLAGFLWSLKNGQYEDLDGAATRILIDDETKPISKSLSDH
>NZ_CP022604.1|WP_095446085.1|399880_402139_-|cadmium-translocating-P-type-ATPase
MSCCVENAQIATVIQTVSPDEMLVASRALGDGLRQLDLSVPGVHCGLCIKTIEEVLGKLPGVAYVRVNLTARRVTIRWKDGETPPDVVDPLRRLGYEAHIFDMVQDKDPAFTRLLIALGVAAFASSNVMLLSVAVWSGADAATRDMFHWISGLIALPTLIYSGRIFYVSAWNALRAHRVNMDVPIALAISLAFGMSVYETMNHGQHAYFDASVSLLFFLLIGRTLDYLMRARARSAVRGLAQLSPRGAVVIGENDERNYLPVNEVRPGMRIILAAGERVPVDAKVEDGHSELDCAIASGESDAVPVGPGSDIRAGTMNLSAPLVIRATAEAKDSFLAEMVRLMDVAEGGRAYYRRLADRASELYVPMVHTIAFAAFVGWMIYTGGDWYRSIYIAICTLIITCPCALALAVPIVQVVAARRLFENGIMIKDGSAMERMAEIDTAIFDKTGTLTLGQPRLINRDMINPNHLEIAAELSLYSRHPLSRALALFSGAKPMTAFTRIEEVPGSGIDAALNGTVYRLGKREWTDSNAHADTADGPETCLSIDGKLVETFRFEDQPREDAASAIGTLKRNGLKLEIISGDKQPAVQKLAGYLGVDTYRGEVLPADKSQLVQELTADGRKVLMVGDGLNDAPALVAAHVSMAPATAADIGRNAADFVFLRESLSAVPLAFAVSKEAGKLISQNFALSIGYNIIAVPIAIFGYVTPLVAALSMSLSSIVVVSNAMRLRAGKQKQPVQTTVAPAAILKEAHK

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Crispr_ID: NZ_CP022604_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022604_2

999889-999991

Orphan

Consensus_repeat	Method
CGCTGACGGGTGTCATGGTGTCACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP022604_2

>merge|NZ_CP022604|2|999889-999991|CRISPRCasFinder
CGCTGACGGGTGTCATGGTGTCACCGGTGACACGGTGTCACCCGTGACAACGGCGGCTGAGACGGGTGACATTGACGACGCCGACGGGTGTCATGGTGTCACC

>NZ_CP022604|2|2|999889-999991|CRISPRCasFinder
CGCTGACGGGTGTCATGGTGTCACC	GGTGACACGGTGTCACCCGTGACAACGGCGGCTGAGACGGGTGACATTGACGA
CGCCGACGGGTGTCATGGTGTCACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022604.1\|WP_095446580.1\|1005314_1005536_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|376942
NZ_CP022604.1\|WP_095446573.1\|998799_999081_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022604.1\|WP_095446570.1\|996488_996755_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022604.1\|WP_095446584.1\|1009074_1010112_+\|major-capsid-protein	unknown	unknown	gnl\|CDD\|377147
NZ_CP022604.1\|WP_095447896.1\|994816_995449_-\|phage-repressor-protein	unknown	unknown	gnl\|CDD\|224885
NZ_CP022604.1\|WP_095446579.1\|1003268_1005302_+\|terminase	unknown	unknown	gnl\|CDD\|368649
NZ_CP022604.1\|WP_095446574.1\|999077_999593_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022604.1\|WP_095446571.1\|996869_998168_+\|ParB-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|319266
NZ_CP022604.1\|WP_157743459.1\|994180_994342_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022604.1\|WP_095446577.1\|1001623_1002406_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022604.1\|WP_095446576.1\|1000748_1001405_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|193574
NZ_CP022604.1\|WP_095446583.1\|1008670_1009021_+\|head-decoration-protein	unknown	unknown	gnl\|CDD\|376964
NZ_CP022604.1\|WP_157743461.1\|1008107_1008623_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371058
NZ_CP022604.1\|WP_095446569.1\|996021_996486_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022604.1\|WP_095446581.1\|1007160_1008054_+\|S49-family-peptidase	unknown	unknown	gnl\|CDD\|132933
NZ_CP022604.1\|WP_095446578.1\|1002612_1003272_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022604.1\|WP_095447897.1\|1005613_1007164_+\|phage-portal-protein	unknown	unknown	gnl\|CDD\|377468
NZ_CP022604.1\|WP_095446572.1\|998164_998803_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022604.1\|WP_095446568.1\|994334_994565_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022604.1\|WP_095446567.1\|992769_993897_-\|DNA-polymerase-III-subunit-beta	unknown	unknown	gnl\|CDD\|235541

Protein	Function_ID	Function_description	E-value
NZ_CP022604.1\|WP_095446576.1\|1000748_1001405_+\|hypothetical-protein	gnl\|CDD\|193574	cd08000, NGN, N-Utilization Substance G (NusG) N-terminal (NGN) domain Superfamily. The N-Utilization Substance G (NusG) and its eukaryotic homolog Spt5 are involved in transcription elongation and termination. NusG contains an NGN domain at its N-terminus and Kyrpides Ouzounis and Woese (KOW) repeats at its C-terminus in bacteria and archaea. The eukaryotic ortholog, Spt5, is a large protein composed of an acidic N-terminus, an NGN domain, and multiple KOW motifs at its C-terminus. Spt5 forms a Spt4-Spt5 complex that is an essential RNA Polymerase II elongation factor. NusG was originally discovered as an N-dependent antitermination enhancing activity in Escherichia coli and has a variety of functions, such as being involved in RNA polymerase elongation and Rho-termination in bacteria. Orthologs of the NusG gene exist in all bacteria, but its functions and requirements are different. The diverse activities suggest that, after diverging from a common ancestor, NusG proteins became specialized in different bacteria.	4.1765e-18
NZ_CP022604.1\|WP_095446580.1\|1005314_1005536_+\|phage-tail-protein	gnl\|CDD\|376942	pfam02831, gpW, gpW. gpW is a 68 residue protein known to be present in phage particles. Extracts of phage-infected cells lacking gpW contain DNA-filled heads, and active tails, but no infectious virions. gpW is required for the addition of gpFII to the head, which is, in turn, required for the attachment of tails. Since gpFII and tails are known to be attached at the connector, gpW is also likely to assemble at this site. The addition of gpW to filled heads increases the DNase resistance of the packaged DNA, suggesting that gpW either forms a plug at the connector to prevent ejection of the DNA, or binds directly to the DNA. The large number of positively charged residues in gpW (its calculated pI is 10.8) is consistent with a role in DNA interaction.	7.71178e-10
NZ_CP022604.1\|WP_095446581.1\|1007160_1008054_+\|S49-family-peptidase	gnl\|CDD\|132933	cd07022, S49_Sppa_36K_type, Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.	3.71008e-71
NZ_CP022604.1\|WP_095447897.1\|1005613_1007164_+\|phage-portal-protein	gnl\|CDD\|377468	pfam05136, Phage_portal_2, Phage portal protein, lambda family. This protein forms a hole, or portal, that enables DNA passage during packaging and ejection. It also forms the junction between the phage capsid and the tail proteins.	6.84157e-109
NZ_CP022604.1\|WP_095446584.1\|1009074_1010112_+\|major-capsid-protein	gnl\|CDD\|377147	pfam03864, Phage_cap_E, Phage major capsid protein E. Major capsid protein E is involved with the stabilisation of the condensed form of the DNA molecule in phage heads.	1.34114e-56
NZ_CP022604.1\|WP_157743461.1\|1008107_1008623_+\|hypothetical-protein	gnl\|CDD\|371058	pfam10446, DUF2457, Protein of unknown function (DUF2457). This is a family of uncharacterized proteins.	0.00767637
NZ_CP022604.1\|WP_095447896.1\|994816_995449_-\|phage-repressor-protein	gnl\|CDD\|224885	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms].	9.35242e-06
NZ_CP022604.1\|WP_095446579.1\|1003268_1005302_+\|terminase	gnl\|CDD\|368649	pfam05876, Terminase_GpA, Phage terminase large subunit (GpA). This family consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities.	8.43222e-133
NZ_CP022604.1\|WP_095446583.1\|1008670_1009021_+\|head-decoration-protein	gnl\|CDD\|376964	pfam02924, HDPD, Bacteriophage lambda head decoration protein D.	1.74054e-11
NZ_CP022604.1\|WP_095446571.1\|996869_998168_+\|ParB-N-terminal-domain-containing-protein	gnl\|CDD\|319266	cd16409, ParB_N_like, ParB N-terminal-like domain of bacterial and plasmid parABS partitioning systems. This family represents the N-terminal domain of ParB, a DNA-binding component of the prokaryotic parABS partitioning system. parABS contributes to the efficient segregation of chromosomes and low-copy number plasmids to daughter cells during prokaryotic cell division. The process includes the parA (Walker box) ATPase, the ParB DNA-binding protein and a parS cis-acting DNA sites. Binding of ParB to centromere-like parS sites is followed by non-specific binding to DNA ("spreading", which has been implicated in gene silencing in plasmid P1) and oligomerization of additional ParB molecules near the parS sites. It has been proposed that ParB-ParB cross-linking compacts the DNA, binds to parA via the N-terminal region, and leads to parA separating the ParB-parS complexes and the recruitment of the SMC (structural maintenance of chromosomes) complexes. The ParB N-terminal domain of Bacillus subtilis and other species contains a Arginine-rich ParB Box II with residues essential for bridging of the ParB-parS complexes. The arginine-rich ParB Box II consensus (I[VIL]AGERR[FYW]RA[AS] identified in several species is partially conserved with this family and related families. Mutations within the basic columns particularly debilitate spreading from the parS sites and impair SMC recruitment. The C-terminal domain contains a HTH DNA-binding motif and is the primary homo-dimerization domain, and binds to parS DNA sites. Additional homo-dimerization contacts are found along the N-terminal domain, but dimerization of the N-terminus may only occur after concentration at ParB-parS foci.	5.24246e-24
NZ_CP022604.1\|WP_095446567.1\|992769_993897_-\|DNA-polymerase-III-subunit-beta	gnl\|CDD\|235541	PRK05643, PRK05643, DNA polymerase III subunit beta; Validated.	5.50289e-119

>NZ_CP022604.1|WP_095446574.1|999077_999593_+|hypothetical-protein
MSADASDLRRIRAKLAALEGADWQLCCESDVSFVEAKTRHGELNKVATFHPGATFDEIDFIVSAPRMVTTMLELVDRAIVAMRQRGPKQGGQRQLQNYAAEAAMKCDDDAFKAFLEQRHGLEWPLTKERAAEKLRTILKIQSRKELNENSAAADRWRDLRAAFEAWLRVGQ
>NZ_CP022604.1|WP_095446573.1|998799_999081_+|hypothetical-protein
MTDTMLPILRAMHDAGTDAERAAILLTCPISIMLKYRQVLESACARHDFDAGSEYLVCFYAAMHQTRFRGNVRGAALKHAEGRLLLLSEQVPL
>NZ_CP022604.1|WP_095446572.1|998164_998803_+|hypothetical-protein
MKPLRVFVACEFSGTVRNAFLARGHDAWSCDLLPAEDQTNRHIVGDARDYLNDGWDLLIVAHPPCTRLCNSGVRWLTKPPRGKTVSQIWQELDEAAELFSTFWDAPIHRICVENPVMHKHAKSRIRNYAPPAQSVQPWQFGHGEVKRTCFWLNNLPPLQATNIVDGRTARVHRMPPGPDRWRERSRFFTGIADAMADQWGGLPAAEFVEAAQ
>NZ_CP022604.1|WP_095446571.1|996869_998168_+|ParB-N-terminal-domain-containing-protein
MDAPVHIKIADIDVRDRLREVDASKVEALKQSFAELGMRTPITVRVGEDGLPFVLSAGAHRLEAARELGWLEVPGFIRDESKLDSELWEIDENLARSELSPADRAVFTFRRKELYLLKYPETAHGGDRKSSGQVGQLIDRQERKSFVAATAELSGKSERAIRRDADRGEKICEAALRLLRGTRFDNGTTLDKLKKLPSDVAQIALIEGLKAEDKRVAAESKQARAHTQKVKHAVRMTIAAEIAKRGRETAPGIIQKLYPIIYADPPWKFETHSEITGGEKGAENHYPTMEFDAICRLFKEIGDPATPDAMLYLWVTTPMKGRAINELLPAWGFEYVSEQIWNKVNIGTGYQVRDQHESLLIAKRGKGFSPELGDAAPSLYTQKKRRHSEKPAWFAEQLERIYPDLPKLEMFCRDPRPGWDAWGYEAAGRAVE
>NZ_CP022604.1|WP_095446570.1|996488_996755_+|hypothetical-protein
MVSVSSLVDQWIADNGAPRRFEPEVSGSFEYFNCYLHRFGIRLRMQGWRCHYSQNGGQWRPIPRRRVRKLVDELRKLEGLEPLRAVRQ
>NZ_CP022604.1|WP_095446569.1|996021_996486_+|hypothetical-protein
MRTISEQEQRSLKSATDGAYALAGGISCILPFTRVGTSTLSKYASFNDEHHDSFMPLDVAIEVDRKAKSPTIIKQAAELLGYELVAANAVIDGDHAPLTAMDAHRVMSETMDVSQAVLAALADGRIDAGERKTIAKEAREAMRALEDLLRKVGA
>NZ_CP022604.1|WP_095447896.1|994816_995449_-|phage-repressor-protein
MLADVLNRIQKRLDAVGLKESRAATIAGLSDSAIRNMRRAVEAGKDRGASIKTLEKLAPVLGTNVTWLMEGIGNEEGSAEPASITDVPLISWISAGELTHQDPVGYLDDHPTIPAVNLPIGEWIALRVDGPSMNKISPPDSIIFINTQDKRLVANGCYVICDETGKATYKRYRPNETPQFQPASYQEIDPPILEGAITVIGRVKRSVIDM
>NZ_CP022604.1|WP_095446568.1|994334_994565_-|hypothetical-protein
MIKVQPKAISKPAPTCRDNVIVKMADTMRVLAFSGDNVSPETLAHHGFSGDVVDRFGARAAALARRLSVRQVASHV
>NZ_CP022604.1|WP_157743459.1|994180_994342_-|hypothetical-protein
MYNEIRFQTEVDGGFHLPTAYKAHARQLDHMVAIATLIAGSVCAAILAVSIFG
>NZ_CP022604.1|WP_095446567.1|992769_993897_-|DNA-polymerase-III-subunit-beta
MPAIIHFAIERRALLPALAVANRAVEKKPTVPILGNVLIQCENGHLTVSGTNLDVEVKARAVQGGISDFPAFTVSSGLLHSAVSKLPDGCEIEFEGDDAVINIRAGRSKLQVPVLPASDFPEIPGNNFPHAFNLPANDLSRALSNVGFAVSTEESRYYLNGIFMHGNEGKLNFVATDGHQFAYLKIQAPDGCDGMPGVIIPRGILNLLSHCTKAGGDTVISLSDRKIRFAFQDGVTVTSKLVEGTYPDYQRIIPTRNDKLYHVDREAMLEAVGRVSLVVGEKSDAIKFAFGADDVRLEIENPLAGNMEDAVSLSESHPEDISIGLSYKYCTNVLSAIGSEEVRFALEASNSPCLISPVQDPEAGDPPLFIIMPMR
>NZ_CP022604.1|WP_095446576.1|1000748_1001405_+|hypothetical-protein
MMTIDPRQIDRAIASTPTDEQCRAIDKVIAERRRIARLRSETANRAGDDSPWFVLSVLTGRELSVRDQLIDANIEVIVPMKMGPKLRRFHKEIPAKPQPVMVGYILVRCQLNNASLAGLLTFDHVVSVLGGSERPYLVDADKVNKFNEKAGKGEFDHEVPQSAFTGVKRVAIREGVFAGKEAKFISGPAKGKGVAVVELEIFGQSRSMIMPLAFLAPL
>NZ_CP022604.1|WP_095446577.1|1001623_1002406_+|hypothetical-protein
MNLDVSTGLNGSSAAAYLNFDTKNFDALLNSVEREVMPKAAVAALNRTAAVGRLEVQKEMELKLDAVTPYAKRGVIYEQANKDRLSATVMISGRSWGLKNSTPPANFLTPQFFGGQRNLKSFERQLQSASHLKSGEYAVPARDTPLDQYGNVRVALIVRILADLQVTPRTEGYNRKRSDASTKRNRNYRFARFFVPERNSHLHPGVWQRDPRDNGIKAVFLFVRMRPYTKRVDFFGVVKNVAEKRFGQFMAEEIGKRMKR
>NZ_CP022604.1|WP_095446578.1|1002612_1003272_+|hypothetical-protein
MTATQSLPTMTKGEFARLINVTPGRVSQYIASGQIGPDALDGTGRSARIIVDKARRHLNGRLDVAQRLGLNGIATRAAPLEESKQELDLSSAPAVTLPRTDVVADQIALEKLEQAKMQTARARREEALAKGRYIFADDAKAEITRAVAMAYRVMEGGLADMATYLAGQFEVPQRDILHHLQKSFRDVRARAAQSFRDAVDNEPAHITDDLMDADSEDDQ
>NZ_CP022604.1|WP_095446579.1|1003268_1005302_+|terminase
MTLLCNPRRLTYQVLMQETQPPPPVDYLKWAKGNIVFSDRITQFPGPYNEALFPFFSEILRALSPEDACRMVTIAKSAQVGGTVLANIFTLGTMDMDPCDFLYVHPTEENASRWSKQKLMPLLRETTALASLFPEKSRDGSNSIHYKERADGRGAIQAAGANSPSGLSMISPRKQVQDDLSKWQNNEAGDPESQAESRSKAFISAKILKISTPLIAPGCRISTNFEQGTQERYHVPCPHCRHLHALEWENMRDHIDAEHPEKAGFFCPKCGGEIREHHRAWMVDPANGANWVAKYPERARYHRSFHIWVAYSPLESWEALARAYLNVQRGGPDDKGKKSGAEQVFFNDWLGQPFETDGEAIGWELLRDRAELGSVIRGVIPPRALVLTIGIDVQGDRVEWQLLGHGKNRYRVVIDRGIFDDTAGRTLPGYVSHSGHISEPQVQYALSKLIQREWPDSWGNRRKADLTAIDGNAYTEDVWEWARKHPITDVIMVRGDNREAAPMLGQVKKEKDKRGKPLKYQRRFFNFNASVMKAALYRSYKKEDPEQTGYIEFAKGLGDDFFQQATSERRVQRKNRAGHPYYEWELPSGIRNEALDMINQAQAAALRLGINYWTEEEWDALAERLASEPPPAQLDLEEMMFQTSQPSQSSSRHEPQDKNPLVAAAIARARARASRRG
>NZ_CP022604.1|WP_095446580.1|1005314_1005536_+|phage-tail-protein
MANREIIQKRLTEAQDALHRLLTGAATVQLSYQGESVTYTTADEGKLRNYIRELESQLGLAPSRSRARRVVFG
>NZ_CP022604.1|WP_095447897.1|1005613_1007164_+|phage-portal-protein
MSAAYSAASNDHSSMAAWRPGTYSGQSALGLNRDVVVDRINDAVRNSGWASAGVTRLVDNVIGSGWRLSSKPNARTLNLTEDEADEIGDQIEALWSDVATDPRNWFDAERTKSVAGILGLAARHRFTDGEAFAVLPYRMGGNGYGTCVQVIDPARLSNPMGQMDSETLRDGVELDEYGAPVAYHIRKAHPGDVFGRMQQMFIWERIEREDEYGRPIAVHSYEATRAGMTRGASRWAPILQQLKQVSDYNDYELQAASLNAVMAAFIKTPFDMDQLADSLGAGDIGKSINALTAAQAAAYGADPIRLKGAQINFLNPGEDVVFTKSEHPNAAFEVFVNAALRNIASCVGLTYEQLTMDWSKVNYSSARAALLEIWRGLSAEKSSFAHSFMQPIYWAWLEEVFDQRRIILPPHAVSFQANPAGWVRAAWIGSGRGWVDPEKEAKAAAIRLATGLTTQESESAEQGRDWKEDMMQRAREQRFARKLGVVSGETASAGVVSRFASDPNEQGDEEKEEASK
>NZ_CP022604.1|WP_095446581.1|1007160_1008054_+|S49-family-peptidase
MMPYAMPEVAARLFNTPLMLHEGKANIIARAFGPRVLGNEVNVRASPEMGVLTEDMRELRDGWTGEKIYNGPKMVGQVAVIEAEGSLVNKGAWVGKSSGVTSYEGLNIQIADCHERDDIKAAVIEVDSFGGEVDGCFNCAEDLFQLSQKKPTIAVLTDHACSAAYLIASACRQIVIPATGYAGSIGVISMHVDASEWAKKQGLGVTILRAGERKARPGMFEAMSDDEYNTAIEDLESMRVLFAETVARYRGGRISLDAALATEADTFRGQKAVDLGLVDAVARPKDAFNEFLAAIGA
>NZ_CP022604.1|WP_157743461.1|1008107_1008623_+|hypothetical-protein
MSLARAIRAAVGGRSMKYRLEDEKPEELEDDERPEDAEDDENADPAADDEDEPKPEADEDEPVADDEKEGGEYARGRRAERKRMSSILGCSHADGNPTLAAHLAFKTGMSAKSAISALRASGSAASTQPSLASRMNGRVPALGNGGVTTQPKTADAKLVAFAKSRAAARKA
>NZ_CP022604.1|WP_095446583.1|1008670_1009021_+|head-decoration-protein
MQTQDYTPGDLLVGDYPVAVRTVTIGAGQVLKRGAVLGGVAGTFKLSAAAETDGSEVPSAVLAVDVDTTAGPVQKRVYTSAGFDSSKLILGEGHTVDTVEAAFREASAPLYIHKLA
>NZ_CP022604.1|WP_095446584.1|1009074_1010112_+|major-capsid-protein
MENYLFSTVALAAVIESRDRPTAWIRDTFFPNGFQSDSEEIAFDKLKRRRNVAPFVSPLVPGRERAIRGRQTTTFTPAYVKPKNTIRPGEGFRRRPGERIGGELSPEDRYLQTVTDTLFDQDDEITRREEIMAAEALKSGKITVSGEDYETQVVDYARKAELTVALTGANRWGENGVKVRTSIRDWGTRVAKASGGAATEIILGAEAAELLQTDEEMRQLLDNRRQADGVMQLGPIAAGSEDMVAVYLGSVGQFNYWQYTQLFQDDAGNDIEVWPSYGVGVVSPSQLQGFMAHGAIQDTGARLAPLARFAKMWEQQDPSATMLMTQSAPLPVPGDANASLFALVR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP022604_2	2.1\|999914\|53\|NZ_CP022604\|CRISPRCasFinder	999914-999966	53	NZ_CP022604.1	1574432-1574484	0	1.0

1. spacer 2.1|999914|53|NZ_CP022604|CRISPRCasFinder matches to position: 1574432-1574484, mismatch: 0, identity: 1.0

ggtgacacggtgtcacccgtgacaacggcggctgagacgggtgacattgacga	CRISPR spacer
ggtgacacggtgtcacccgtgacaacggcggctgagacgggtgacattgacga	Protospacer
*****************************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP022604_1	1.1\|390107\|31\|NZ_CP022604\|CRISPRCasFinder	390107-390137	31	NZ_CP022605	Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence	286804-286834	6	0.806

1. spacer 1.1|390107|31|NZ_CP022604|CRISPRCasFinder matches to NZ_CP022605 (Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.806

acggttttcggcaaagatgcgcgtagagaga	CRISPR spacer
acggttttcggagaagatgcgcgtcaaaata	Protospacer
*********** .*********** .*.* *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

566544 : 614486

Rhodobacter_phage(13.33%)

head,portal,tail,protease,holin,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_095446230.1\|566544_568194_-\|holin	choline dehydrogenase	A0A1V0SI18	Klosneuvirus	5.1e-60	31.5
WP_095446231.1\|568196_568781_-	transcriptional regulator BetI	NA	NA	NA	NA
WP_095446232.1\|568945_569410_+	transcription elongation factor	NA	NA	NA	NA
WP_024897243.1\|569411_570404_-	magnesium transporter CorA family protein	NA	NA	NA	NA
WP_095446233.1\|570615_571293_+	FadR family transcriptional regulator	NA	NA	NA	NA
WP_095446234.1\|571289_572594_+	CynX/NimT family MFS transporter	NA	NA	NA	NA
WP_095446235.1\|572636_572999_-	hypothetical protein	NA	NA	NA	NA
WP_095446236.1\|573206_574721_+	DUF853 domain-containing protein	A0A248XCZ8	Klebsiella_phage	4.8e-81	42.5
WP_095446237.1\|574792_575509_-	L,D-transpeptidase	NA	NA	NA	NA
WP_095446238.1\|575799_576453_-	haloacid dehalogenase type II	NA	NA	NA	NA
WP_095446240.1\|576666_577263_+	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	1.5e-41	44.1
WP_095446241.1\|577593_578034_+	cytochrome c	NA	NA	NA	NA
WP_095446242.1\|578045_578984_+	cytochrome c	NA	NA	NA	NA
WP_095446243.1\|579129_580818_-	AMP-binding protein	A0A1V0SBX8	Catovirus	1.9e-25	24.3
WP_095446244.1\|580903_581248_-	hypothetical protein	NA	NA	NA	NA
WP_095446245.1\|581776_583165_+	MATE family efflux transporter	NA	NA	NA	NA
WP_095446246.1\|583251_585345_-	S9 family peptidase	NA	NA	NA	NA
WP_095446247.1\|585416_585836_-	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_024897256.1\|586464_586893_+	MucR family transcriptional regulator	A0A1P8VVG0	Erythrobacter_phage	6.0e-21	46.8
WP_095446248.1\|587113_587416_-	cytoplasmic protein	NA	NA	NA	NA
WP_095447856.1\|587608_588055_+	hypothetical protein	NA	NA	NA	NA
WP_095446249.1\|588051_588831_+	hypothetical protein	NA	NA	NA	NA
WP_095446250.1\|588942_590250_+	amidase	NA	NA	NA	NA
WP_095446251.1\|590375_590801_-	SufE family protein	NA	NA	NA	NA
WP_095446252.1\|590924_591392_-	hypothetical protein	NA	NA	NA	NA
WP_095446253.1\|591793_593644_+	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	1.6e-25	31.3
WP_095446254.1\|593618_594593_+	peptidoglycan-binding protein	NA	NA	NA	NA
WP_095446255.1\|594625_594871_+	hypothetical protein	NA	NA	NA	NA
WP_095446256.1\|594975_595326_+	DUF1491 family protein	NA	NA	NA	NA
WP_095446257.1\|595320_596301_-	DUF2336 domain-containing protein	NA	NA	NA	NA
WP_095446258.1\|596462_597005_-	hypothetical protein	NA	NA	NA	NA
WP_095446259.1\|596997_597594_-	DUF1214 domain-containing protein	NA	NA	NA	NA
WP_095446260.1\|597704_599864_-	penicillin-binding protein 1A	NA	NA	NA	NA
WP_095446261.1\|600189_600702_+	hypothetical protein	NA	NA	NA	NA
WP_095446262.1\|600664_601900_+	DNA-packaging protein	A0A0U4IJ26	Arthrobacter_phage	9.5e-67	37.9
WP_095447857.1\|601928_603122_+\|portal	phage portal protein	W8ECU7	Geobacillus_phage	9.1e-67	38.8
WP_095446263.1\|603118_603496_+	hypothetical protein	NA	NA	NA	NA
WP_095446264.1\|603482_604163_+\|head,protease	HK97 family phage prohead protease	A0A0R6PKF0	Moraxella_phage	6.4e-33	43.8
WP_095446265.1\|604174_605461_+\|capsid	phage major capsid protein	Q8HAD2	Salmonella_phage	5.2e-84	44.0
WP_095446266.1\|605619_606180_+	hypothetical protein	NA	NA	NA	NA
WP_095446267.1\|606176_606515_+\|head	phage head closure protein	NA	NA	NA	NA
WP_095446268.1\|606647_607058_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_095446269.1\|607212_607626_+\|tail	phage major tail protein, TP901-1 family	NA	NA	NA	NA
WP_095447858.1\|607625_607970_+	gene transfer agent family protein	NA	NA	NA	NA
WP_095446270.1\|607966_608182_+\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_095446271.1\|608187_608736_+\|tail	phage tail tape measure protein	A0A1B0VMG8	Pseudomonas_phage	9.8e-08	38.5
WP_095446272.1\|608737_609367_+	TIGR02217 family protein	A0A0K1LLZ8	Rhodobacter_phage	3.1e-50	50.5
WP_095446273.1\|609363_610239_+	DUF2163 domain-containing protein	A0A1V0DY93	Dinoroseobacter_phage	5.5e-53	38.5
WP_095446274.1\|610235_610670_+	peptidase P60	F4YXU4	Roseobacter_phage	2.7e-29	42.8
WP_095446275.1\|610673_614486_+	host specificity protein	A0A0K1LL82	Rhodobacter_phage	7.9e-213	37.4

DBSCAN-SWA_2

901234 : 914417

uncultured_Mediterranean_phage(90.91%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_095446498.1\|901234_902254_+	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	3.7e-16	37.0
WP_095446499.1\|902327_903179_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	1.5e-31	34.3
WP_095446500.1\|903171_903882_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	5.5e-43	45.7
WP_024896600.1\|904025_904259_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	2.1e-07	65.1
WP_095446501.1\|904474_905119_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_095446502.1\|905115_905964_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	9.4e-50	45.2
WP_095446503.1\|906039_907323_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	5.5e-102	47.2
WP_095446504.1\|907464_908232_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.3e-37	36.9
WP_095446505.1\|908228_908897_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	8.6e-14	34.8
WP_095446506.1\|909306_910563_+	M23 family metallopeptidase	Q8SBN9	Clostridium_phage	4.8e-18	40.2
WP_095446507.1\|910614_911478_-	ATP-binding protein	NA	NA	NA	NA
WP_095446508.1\|911637_911979_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	1.8e-12	41.5
WP_095446509.1\|912140_914417_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	2.4e-52	45.5

DBSCAN-SWA_3

961585 : 1010112

Sinorhizobium_phage(61.54%)

head,portal,capsid,terminase,tail,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_095445838.1\|961585_962340_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_095446542.1\|962537_962888_-	TfoX/Sxy family protein	NA	NA	NA	NA
WP_095446543.1\|962904_963285_-	Fe-S cluster assembly scaffold SufA	A0A218MM00	uncultured_virus	6.8e-08	31.2
WP_095446544.1\|963496_964132_+	hypothetical protein	NA	NA	NA	NA
WP_095446545.1\|964308_964509_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA
WP_095447890.1\|964864_965533_+	protein-L-isoaspartate O-methyltransferase	NA	NA	NA	NA
WP_095446546.1\|965672_967043_+	TolC family outer membrane protein	NA	NA	NA	NA
WP_095446547.1\|967256_967985_+	DUF2497 domain-containing protein	NA	NA	NA	NA
WP_095446548.1\|968219_970952_+\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	4.3e-144	38.8
WP_095447891.1\|971480_972614_+	transporter	NA	NA	NA	NA
WP_095446549.1\|972679_973555_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_095446550.1\|973585_974206_-	glutathione S-transferase	NA	NA	NA	NA
WP_095447892.1\|974332_975166_-	ABC transporter permease	NA	NA	NA	NA
WP_095446551.1\|975168_975891_-	ABC transporter permease	NA	NA	NA	NA
WP_095446552.1\|976025_976832_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_095446553.1\|977172_977676_-	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA
WP_095447893.1\|977672_978305_-	molybdenum cofactor guanylyltransferase	NA	NA	NA	NA
WP_095446554.1\|978313_979201_-	DMT family transporter	NA	NA	NA	NA
WP_167388298.1\|979326_980373_-	GTP 3',8-cyclase MoaA	NA	NA	NA	NA
WP_095446556.1\|980635_980998_+	DUF971 domain-containing protein	NA	NA	NA	NA
WP_095447894.1\|981043_982663_-	fumarate hydratase	NA	NA	NA	NA
WP_095446557.1\|982982_984986_+	L,D-transpeptidase family protein	NA	NA	NA	NA
WP_095447895.1\|985094_985655_-	hypothetical protein	NA	NA	NA	NA
WP_095446558.1\|985987_987037_+	lipoate--protein ligase family protein	NA	NA	NA	NA
WP_095446559.1\|987130_988756_+	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L0W2	Tupanvirus	1.7e-60	30.3
WP_095446560.1\|988797_989577_-	acetoin reductase	NA	NA	NA	NA
WP_095446561.1\|989808_990651_+	iron ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_095446562.1\|991021_991243_-	hypothetical protein	NA	NA	NA	NA
WP_095446563.1\|991235_991487_-	hypothetical protein	NA	NA	NA	NA
WP_167388309.1\|991483_991696_-	hypothetical protein	A0A291AUJ0	Sinorhizobium_phage	1.6e-14	63.1
WP_095446565.1\|991689_992421_-	hypothetical protein	NA	NA	NA	NA
WP_095446566.1\|992564_992753_-	hypothetical protein	NA	NA	NA	NA
WP_095446567.1\|992769_993897_-	DNA polymerase III subunit beta	R9TRR6	Rhizobium_phage	4.4e-63	39.0
WP_157743459.1\|994180_994342_-	hypothetical protein	NA	NA	NA	NA
WP_095446568.1\|994334_994565_-	hypothetical protein	NA	NA	NA	NA
WP_095447896.1\|994816_995449_-	phage repressor protein	NA	NA	NA	NA
WP_095446569.1\|996021_996486_+	hypothetical protein	A0A291AUS4	Sinorhizobium_phage	5.0e-29	49.0
WP_095446570.1\|996488_996755_+	hypothetical protein	NA	NA	NA	NA
WP_095446571.1\|996869_998168_+	ParB N-terminal domain-containing protein	M4MB46	Vibrio_phage	1.1e-20	35.0
WP_095446572.1\|998164_998803_+	hypothetical protein	A0A291AUT5	Sinorhizobium_phage	1.1e-69	58.6
WP_095446573.1\|998799_999081_+	hypothetical protein	NA	NA	NA	NA
WP_095446574.1\|999077_999593_+	hypothetical protein	A0A291AUJ2	Sinorhizobium_phage	4.3e-21	38.7
WP_157743460.1\|999589_1000762_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_095446576.1\|1000748_1001405_+	hypothetical protein	NA	NA	NA	NA
WP_095446577.1\|1001623_1002406_+	hypothetical protein	NA	NA	NA	NA
WP_095446578.1\|1002612_1003272_+	hypothetical protein	NA	NA	NA	NA
WP_095446579.1\|1003268_1005302_+\|terminase	terminase	A0A291AUK9	Sinorhizobium_phage	6.6e-259	64.0
WP_095446580.1\|1005314_1005536_+\|tail	phage tail protein	NA	NA	NA	NA
WP_095447897.1\|1005613_1007164_+\|portal	phage portal protein	A0A291AUL8	Sinorhizobium_phage	4.0e-163	56.3
WP_095446581.1\|1007160_1008054_+	S49 family peptidase	A0A291AUM2	Sinorhizobium_phage	4.4e-90	57.8
WP_157743461.1\|1008107_1008623_+	hypothetical protein	NA	NA	NA	NA
WP_095446583.1\|1008670_1009021_+\|head	head decoration protein	NA	NA	NA	NA
WP_095446584.1\|1009074_1010112_+\|capsid	major capsid protein	A0A291AUL7	Sinorhizobium_phage	1.4e-79	45.7

DBSCAN-SWA_4

1547538 : 1587072

Ochrobactrum_phage(17.24%)

portal,terminase,integrase,tail,plate

attL 1543869:1543885|attR 1587079:1587095

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1543869:1543885	attL	NA	NA	NA	NA
WP_095447009.1\|1547538_1548045_-	lysozyme	L7TM06	Rhizobium_phage	3.9e-27	42.0
WP_095447010.1\|1548037_1548256_-	hypothetical protein	NA	NA	NA	NA
WP_095447011.1\|1548289_1549429_-	late control protein D	D4HTW7	Vibrio_phage	4.7e-44	33.4
WP_095447012.1\|1549452_1549812_+	hypothetical protein	NA	NA	NA	NA
WP_095447013.1\|1549808_1550021_-\|tail	phage tail protein	A0A2H4J946	uncultured_Caudovirales_phage	1.2e-09	46.8
WP_095447014.1\|1550025_1550451_-\|tail	phage tail protein	Q9ZXJ9	Pseudomonas_virus	3.5e-13	33.9
WP_095447015.1\|1550450_1552793_-\|tail	phage tail tape measure protein	Q75QK7	Wolbachia_phage	7.6e-33	31.2
WP_095447016.1\|1552917_1553196_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_095447017.1\|1553210_1553717_-\|tail	phage major tail tube protein	Q19UP8	Mannheimia_phage	1.9e-18	34.8
WP_095447018.1\|1553771_1555205_-\|tail	phage tail protein	A0A2H4J869	uncultured_Caudovirales_phage	3.1e-29	35.1
WP_095447019.1\|1555298_1555799_-	hypothetical protein	A0A219VHA5	Ochrobactrum_phage	1.1e-24	54.4
WP_095447020.1\|1557125_1560440_-	DUF4815 domain-containing protein	A0A219VHA1	Ochrobactrum_phage	0.0e+00	70.4
WP_095447021.1\|1560446_1560965_-	hypothetical protein	A0A219VHA4	Ochrobactrum_phage	1.4e-35	45.7
WP_095447022.1\|1560964_1561774_-\|tail	phage tail protein	A0A219VHA2	Ochrobactrum_phage	4.3e-84	59.8
WP_095447023.1\|1561773_1562646_-\|plate	baseplate J protein	A0A219VH98	Ochrobactrum_phage	5.3e-80	55.7
WP_095447024.1\|1562648_1563023_-\|plate	baseplate assembly protein	K4I3Z7	Acidithiobacillus_phage	6.4e-19	47.0
WP_095447025.1\|1563028_1563211_-	hypothetical protein	NA	NA	NA	NA
WP_095447026.1\|1563225_1563483_-	PAAR domain-containing protein	A0A0A8ILB2	Aurantimonas_phage	1.2e-08	59.6
WP_095447027.1\|1563482_1563920_-\|plate	baseplate assembly protein	NA	NA	NA	NA
WP_095447028.1\|1563912_1564695_-	hypothetical protein	A0A0A8IKZ7	Aurantimonas_phage	2.8e-40	41.6
WP_095447029.1\|1564694_1565066_-	hypothetical protein	A0A0A8IN54	Aurantimonas_phage	4.2e-10	38.5
WP_095447030.1\|1565072_1565396_-	DUF2190 family protein	A0A2I7S8N5	Vibrio_phage	1.2e-10	42.1
WP_095447031.1\|1565462_1567097_-	hypothetical protein	A0A2I7S8L6	Vibrio_phage	3.8e-31	30.9
WP_095447032.1\|1567192_1567846_-	hypothetical protein	B7SYD7	Stenotrophomonas_phage	8.9e-32	44.9
WP_095447033.1\|1567832_1569362_-\|portal	phage portal protein	B7SYD6	Stenotrophomonas_phage	1.6e-79	39.0
WP_095447034.1\|1569361_1569556_-	hypothetical protein	NA	NA	NA	NA
WP_095447035.1\|1569558_1571376_-\|terminase	phage terminase large subunit family protein	K4I3Y9	Acidithiobacillus_phage	3.9e-85	36.2
WP_167388301.1\|1571290_1572025_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_095447037.1\|1572206_1572776_-	hypothetical protein	A0A0A8IL87	Aurantimonas_phage	6.1e-29	43.5
WP_095447038.1\|1572998_1573652_-	hypothetical protein	NA	NA	NA	NA
WP_157743464.1\|1573635_1574808_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_095447040.1\|1574804_1575326_-	hypothetical protein	A0A291AUJ2	Sinorhizobium_phage	3.2e-24	42.6
WP_095447041.1\|1575322_1575604_-	hypothetical protein	NA	NA	NA	NA
WP_095447042.1\|1575600_1576944_-	DNA (cytosine-5-)-methyltransferase	Q6V7R9	Burkholderia_virus	6.0e-67	40.0
WP_095447043.1\|1576937_1578236_-	ParB N-terminal domain-containing protein	M4MB46	Vibrio_phage	1.1e-20	35.0
WP_095446570.1\|1578350_1578617_-	hypothetical protein	NA	NA	NA	NA
WP_095446569.1\|1578619_1579084_-	hypothetical protein	A0A291AUS4	Sinorhizobium_phage	5.0e-29	49.0
WP_095447933.1\|1579230_1579611_-	hypothetical protein	NA	NA	NA	NA
WP_024899498.1\|1579711_1580407_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_024899497.1\|1580837_1581071_+	hypothetical protein	NA	NA	NA	NA
WP_157743459.1\|1581063_1581225_+	hypothetical protein	NA	NA	NA	NA
WP_095447045.1\|1581508_1582321_+	hypothetical protein	NA	NA	NA	NA
WP_095447046.1\|1582317_1583118_+	hypothetical protein	NA	NA	NA	NA
WP_095447047.1\|1583114_1583615_+	class I SAM-dependent methyltransferase	A0A0N7IRF6	Acinetobacter_phage	1.9e-58	67.5
WP_095447048.1\|1583601_1584399_+	restriction alleviation protein, Lar family	X2CYA0	Brucella_phage	8.4e-16	39.4
WP_095447049.1\|1584395_1584656_+	hypothetical protein	NA	NA	NA	NA
WP_157743466.1\|1584652_1584805_+	hypothetical protein	NA	NA	NA	NA
WP_095447050.1\|1584801_1585185_+	hypothetical protein	NA	NA	NA	NA
WP_157743467.1\|1585425_1585662_+	hypothetical protein	NA	NA	NA	NA
WP_095447052.1\|1585651_1585918_+	hypothetical protein	NA	NA	NA	NA
WP_095447053.1\|1585914_1587072_+\|integrase	tyrosine-type recombinase/integrase	A0A291AUF0	Sinorhizobium_phage	1.2e-52	38.6
1587079:1587095	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NZ_CP022604.1|WP_095447034.1|1569361_1569556_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP022604.1|WP_095447034.1|1569361_1569556_-|hypothetical-protein

1569361_1569556_-

64 aa aa

1547538-1587072

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP022604_2	Orphan	2.1\|999914\|53\|NZ_CP022604\|CRISPRCasFinder	999914-999966	53	1574484-1574432	0

1. spacer 2.1|999914|53|NZ_CP022604|CRISPRCasFinder matches to NZ_CP022604 position: 1574484-1574432, mismatch: 0

ggtgacacggtgtcacccgtgacaacggcggctgagacgggtgacattgacga	CRISPR spacer
ggtgacacggtgtcacccgtgacaacggcggctgagacgggtgacattgacga	Protospacer
*****************************************************

4. NZ_CP022605

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

438096 : 477939

Planktothrix_phage(22.22%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_095448361.1\|438096_438789_-\|transposase	IS6 family transposase	NA	NA	NA	NA
WP_095448362.1\|439006_439285_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_095448363.1\|439281_439608_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A088CBP5	Shigella_phage	3.6e-10	43.5
WP_157743502.1\|440145_440535_-	hypothetical protein	NA	NA	NA	NA
WP_095448365.1\|440984_442343_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
WP_095448366.1\|442339_442699_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_095448367.1\|444997_445198_+	type II toxin-antitoxin system VapB family antitoxin	NA	NA	NA	NA
WP_095448368.1\|445194_445572_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_095448841.1\|445661_447275_-	FGGY-family carbohydrate kinase	NA	NA	NA	NA
WP_095448369.1\|447287_448016_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_095448370.1\|448034_449279_-	ABC transporter permease	NA	NA	NA	NA
WP_095448371.1\|449278_450109_-	sugar ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.1e-16	30.0
WP_095448372.1\|450211_451270_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_095448373.1\|451598_452612_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_095448374.1\|453872_454334_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_095448375.1\|454336_454504_-	type II toxin-antitoxin system prevent-host-death family antitoxin	NA	NA	NA	NA
WP_095448376.1\|454837_455122_-	HigA family addiction module antidote protein	A0A0M3LPV0	Mannheimia_phage	1.2e-12	40.2
WP_095448377.1\|455134_455413_-	Killer protein	A0A2L1IV28	Escherichia_phage	1.4e-18	45.7
WP_095448378.1\|457109_457385_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_095448379.1\|457381_458629_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
WP_095448842.1\|458888_460076_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA
WP_095448380.1\|460092_460572_-	RidA family protein	NA	NA	NA	NA
WP_095448381.1\|460586_461378_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.6e-35	41.0
WP_095448382.1\|461382_462030_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_095448383.1\|462031_462697_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_095448384.1\|462763_463642_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_095448385.1\|463782_464565_+	IclR family transcriptional regulator	NA	NA	NA	NA
WP_095448386.1\|464691_465888_-	amidohydrolase/deacetylase family metallohydrolase	NA	NA	NA	NA
WP_095448387.1\|465895_466171_-	hypothetical protein	NA	NA	NA	NA
WP_095448388.1\|466269_466503_-	hypothetical protein	NA	NA	NA	NA
WP_095448389.1\|466493_467195_+\|transposase	IS6 family transposase	NA	NA	NA	NA
WP_095448390.1\|469328_470654_+	hypothetical protein	NA	NA	NA	NA
WP_095448391.1\|471203_472172_+	glycosyltransferase	NA	NA	NA	NA
WP_157743503.1\|472237_472903_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_095444932.1\|474307_474697_+\|transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	1.8e-11	42.0
WP_084486908.1\|474687_475089_+\|transposase	IS5 family transposase	A0A0N9SJT9	Paenibacillus_phage	1.1e-05	30.0
WP_157743504.1\|475741_475990_+\|transposase	IS3 family transposase	A4JX31	Burkholderia_virus	1.2e-08	42.3
WP_095448394.1\|476234_476636_-\|tRNA	tRNA(fMet)-specific endonuclease VapC	NA	NA	NA	NA
WP_095448395.1\|476635_476866_-	antitoxin	NA	NA	NA	NA
WP_095448396.1\|477252_477939_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	2.0e-42	45.5

DBSCAN-SWA_2

484149 : 540805

Planktothrix_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_157743551.1\|484149_485364_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_095448406.1\|485455_485725_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_095448407.1\|485721_486129_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_095448408.1\|486311_488114_+	DNA helicase RecQ	A0A1V0SBK0	Catovirus	5.6e-76	34.4
WP_095448409.1\|488453_489164_+\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	2.9e-28	34.6
WP_095448410.1\|489139_489820_-	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA
WP_157743506.1\|490323_490575_+	hypothetical protein	NA	NA	NA	NA
WP_095448413.1\|491289_491994_+\|transposase	IS6 family transposase	NA	NA	NA	NA
WP_157743507.1\|492407_493019_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA
WP_095448844.1\|493655_494006_+	hypothetical protein	NA	NA	NA	NA
WP_095448415.1\|494158_495085_+	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
WP_095448416.1\|495209_496301_+	phenylacetaldoxime dehydratase family protein	NA	NA	NA	NA
WP_095448417.1\|496478_497984_+	amidase	NA	NA	NA	NA
WP_095448418.1\|498029_499265_+	transporter substrate-binding protein	NA	NA	NA	NA
WP_095448419.1\|499389_500256_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_095448845.1\|500255_501281_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_095448420.1\|501277_502015_+	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	1.7e-15	23.6
WP_095448421.1\|502011_502698_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.9e-16	26.4
WP_095448413.1\|503136_503841_+\|transposase	IS6 family transposase	NA	NA	NA	NA
WP_157743508.1\|503886_506439_-	hypothetical protein	NA	NA	NA	NA
WP_095448423.1\|506880_507351_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_095448846.1\|507499_509872_+	hypothetical protein	NA	NA	NA	NA
WP_157743509.1\|510007_510784_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_157743510.1\|510807_511986_+	M24 family metallopeptidase	NA	NA	NA	NA
WP_095448847.1\|511993_512998_-	succinylglutamate desuccinylase	NA	NA	NA	NA
WP_095448426.1\|513061_514285_-	MFS transporter	NA	NA	NA	NA
WP_095448427.1\|514290_515703_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA
WP_095448428.1\|515757_517008_-	pyridoxal-phosphate dependent enzyme	NA	NA	NA	NA
WP_095448429.1\|517069_517819_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	8.4e-34	39.8
WP_095448430.1\|517855_518548_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_157743511.1\|518547_519243_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_095448432.1\|519495_520248_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_095448433.1\|520576_521470_-	DMT family transporter	NA	NA	NA	NA
WP_095448434.1\|521751_522633_+	amino acid ABC transporter permease	NA	NA	NA	NA
WP_095448435.1\|522632_523394_+	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.1e-32	39.4
WP_095448436.1\|523421_524249_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_095448437.1\|524363_525245_+	polysaccharide deacetylase	NA	NA	NA	NA
WP_095448438.1\|525244_526162_+	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_095448439.1\|526158_527526_+	MmgE/PrpD family protein	NA	NA	NA	NA
WP_095448440.1\|527538_528924_+	argininosuccinate lyase	NA	NA	NA	NA
WP_095448441.1\|529105_530002_+	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	5.2e-14	22.9
WP_095448442.1\|530355_531042_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	6.0e-39	41.5
WP_167388341.1\|533301_533619_-	barstar family protein	NA	NA	NA	NA
WP_095448445.1\|533666_534038_-	hypothetical protein	NA	NA	NA	NA
WP_095448446.1\|535053_535644_-	mobile mystery protein B	NA	NA	NA	NA
WP_095448447.1\|535640_536114_-	mobile mystery protein A	NA	NA	NA	NA
WP_157743512.1\|536523_538029_+	AAA family ATPase	C7BGE8	Burkholderia_phage	5.6e-05	28.0
WP_095448449.1\|538028_538667_+	hypothetical protein	NA	NA	NA	NA
WP_095448450.1\|538756_539587_+	hypothetical protein	NA	NA	NA	NA
WP_095448451.1\|539620_540334_-	hypothetical protein	NA	NA	NA	NA
WP_157743513.1\|540397_540805_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_3

880035 : 932900

Paenibacillus_phage(37.5%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_095448708.1\|880035_880554_-\|transposase	transposase	NA	NA	NA	NA
WP_095448709.1\|880788_881367_+	hypothetical protein	NA	NA	NA	NA
WP_157743533.1\|881460_881961_-	hypothetical protein	NA	NA	NA	NA
WP_157743534.1\|882337_882532_-	hypothetical protein	NA	NA	NA	NA
WP_095448712.1\|882817_883222_-	glyoxalase	NA	NA	NA	NA
WP_095448713.1\|883206_883716_-	helix-turn-helix transcriptional regulator	A0A1B0RXG1	Streptococcus_phage	5.2e-11	38.7
WP_157743535.1\|884060_884228_+	hypothetical protein	NA	NA	NA	NA
WP_095448714.1\|884546_884981_+	hypothetical protein	NA	NA	NA	NA
WP_095448715.1\|885053_885656_+	DUF3011 domain-containing protein	NA	NA	NA	NA
WP_157743536.1\|886052_889403_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_095448718.1\|889536_890175_+	L,D-transpeptidase	NA	NA	NA	NA
WP_095448719.1\|891447_891849_+	VOC family protein	NA	NA	NA	NA
WP_095448720.1\|891889_892516_+	LysE family translocator	NA	NA	NA	NA
WP_095448721.1\|892563_893409_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA
WP_095448722.1\|893430_894033_+	NUDIX domain-containing protein	NA	NA	NA	NA
WP_095448723.1\|895361_896567_-	MFS transporter	NA	NA	NA	NA
WP_095448724.1\|896572_896929_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_095448725.1\|897052_898003_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_095448726.1\|898903_899485_+	invasion-associated locus B family protein	NA	NA	NA	NA
WP_095448727.1\|899499_901269_+	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_157743537.1\|901271_901886_+	invasion associated locus B family protein	NA	NA	NA	NA
WP_095448729.1\|901890_902472_+	hypothetical protein	NA	NA	NA	NA
WP_095448730.1\|902583_911703_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	NA	NA	NA
WP_095448731.1\|911712_912135_+	SMI1/KNR4 family protein	NA	NA	NA	NA
WP_157743538.1\|912896_913013_+	hypothetical protein	NA	NA	NA	NA
WP_157743539.1\|913989_914340_+	hypothetical protein	NA	NA	NA	NA
WP_095448733.1\|914478_914826_+	hypothetical protein	NA	NA	NA	NA
WP_095448734.1\|915775_917083_+	hypothetical protein	NA	NA	NA	NA
WP_095448735.1\|917076_919389_+	hypothetical protein	NA	NA	NA	NA
WP_095444061.1\|919758_920148_-\|transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	3.9e-11	40.0
WP_095448736.1\|920479_920788_+	hypothetical protein	NA	NA	NA	NA
WP_157743540.1\|921067_921637_+	hypothetical protein	NA	NA	NA	NA
WP_095448738.1\|922096_922540_+	hypothetical protein	NA	NA	NA	NA
WP_095448739.1\|922644_923943_+	hypothetical protein	NA	NA	NA	NA
WP_095448884.1\|924459_924762_+	hypothetical protein	NA	NA	NA	NA
WP_095448740.1\|924758_925133_+	hypothetical protein	NA	NA	NA	NA
WP_095448741.1\|925232_926081_+	hypothetical protein	NA	NA	NA	NA
WP_095448742.1\|926151_926364_+	hypothetical protein	NA	NA	NA	NA
WP_095448743.1\|927183_928176_-\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	2.2e-50	37.7
WP_095448744.1\|928506_928752_+	antitoxin	NA	NA	NA	NA
WP_095448745.1\|928741_929029_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A2H4JBF4	uncultured_Caudovirales_phage	7.9e-17	47.3
WP_095448746.1\|929461_929851_+	hypothetical protein	NA	NA	NA	NA
WP_095448747.1\|929847_930741_+\|transposase	transposase	Q75QL1	Wolbachia_phage	2.0e-13	38.0
WP_095448748.1\|930750_931878_-	VWA domain-containing protein	A0A1V0SET4	Hokovirus	8.8e-11	26.7
WP_095444932.1\|932118_932508_+\|transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	1.8e-11	42.0
WP_084486908.1\|932498_932900_+\|transposase	IS5 family transposase	A0A0N9SJT9	Paenibacillus_phage	1.1e-05	30.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP022602

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP022603

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP022604

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information

4. NZ_CP022605

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection