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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP023139 Lactobacillus delbrueckii subsp. lactis strain KCTC 3034 chromosome, complete genome 4 crisprs c2c9_V-U4,cas14j,cas3,DEDDh,Cas14u_CAS-V,cas8c,cas7,cas4,cas1,cas2,DinG,cas14k,csa3 0 5 21 0

Results visualization

1. NZ_CP023139
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP023139_1 339506-339600 TypeV NA
1 spacers
c2c9_V-U4,cas14j

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP023139_2 916173-917015 TypeI NA
12 spacers
cas2,cas1,cas4,cas7,cas8c,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP023139_3 1315616-1315719 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP023139_4 1945857-1946312 Orphan NA
10 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP023139_2 2.5|916472|36|NZ_CP023139|PILER-CR,CRISPRCasFinder,CRT 916472-916507 36 EF455602 Lactobacillus phage LL-H, complete genome 3068-3103 0 1.0
NZ_CP023139_2 2.5|916472|36|NZ_CP023139|PILER-CR,CRISPRCasFinder,CRT 916472-916507 36 NC_022775 Lactobacillus phage phiJB, complete genome 20537-20572 1 0.972
NZ_CP023139_2 2.5|916472|36|NZ_CP023139|PILER-CR,CRISPRCasFinder,CRT 916472-916507 36 CP031025 Lactobacillus phage ViSo-2018b, partial genome 23435-23470 2 0.944
NZ_CP023139_4 4.4|1946031|24|NZ_CP023139|CRT 1946031-1946054 24 NZ_CP024394 Borrelia miyamotoi strain Izh-4 plasmid pIzh4-2 7010-7033 3 0.875
NZ_CP023139_4 4.4|1946031|24|NZ_CP023139|CRT 1946031-1946054 24 NZ_CP024319 Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-lp23, complete sequence 6944-6967 3 0.875
NZ_CP023139_4 4.4|1946031|24|NZ_CP023139|CRT 1946031-1946054 24 NZ_CP024396 Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp29, complete sequence 7059-7082 3 0.875
NZ_CP023139_4 4.4|1946031|24|NZ_CP023139|CRT 1946031-1946054 24 NZ_CP024212 Borrelia miyamotoi strain Izh-5 plasmid pIzh5-5 7075-7098 3 0.875
NZ_CP023139_4 4.4|1946031|24|NZ_CP023139|CRT 1946031-1946054 24 NZ_CP024354 Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-1, complete sequence 7167-7190 3 0.875
NZ_CP023139_4 4.4|1946031|24|NZ_CP023139|CRT 1946031-1946054 24 NZ_CP024359 Borrelia miyamotoi strain Izh-16 plasmid pIzh16-5 7110-7133 3 0.875
NZ_CP023139_2 2.6|916541|35|NZ_CP023139|PILER-CR,CRISPRCasFinder,CRT 916541-916575 35 EF455602 Lactobacillus phage LL-H, complete genome 12848-12882 6 0.829
NZ_CP023139_2 2.6|916541|35|NZ_CP023139|PILER-CR,CRISPRCasFinder,CRT 916541-916575 35 CP031025 Lactobacillus phage ViSo-2018b, partial genome 13440-13474 8 0.771
NZ_CP023139_4 4.7|1946145|30|NZ_CP023139|CRT 1946145-1946174 30 LR745207 uncultured phage genome assembly, chromosome: 1 264976-265005 9 0.7
NZ_CP023139_4 4.7|1946145|30|NZ_CP023139|CRT 1946145-1946174 30 MN694726 Marine virus AFVG_250M757, complete genome 38279-38308 9 0.7
NZ_CP023139_4 4.10|1946265|30|NZ_CP023139|CRT 1946265-1946294 30 KY554772 Lactococcus phage AM5, complete genome 86434-86463 9 0.7
NZ_CP023139_4 4.10|1946265|30|NZ_CP023139|CRT 1946265-1946294 30 NC_049856 Lactococcus phage AM4, complete genome 68479-68508 9 0.7

1. spacer 2.5|916472|36|NZ_CP023139|PILER-CR,CRISPRCasFinder,CRT matches to EF455602 (Lactobacillus phage LL-H, complete genome) position: , mismatch: 0, identity: 1.0

cacttatttggacgacaagctgggctttacgaccaa	CRISPR spacer
cacttatttggacgacaagctgggctttacgaccaa	Protospacer
************************************

2. spacer 2.5|916472|36|NZ_CP023139|PILER-CR,CRISPRCasFinder,CRT matches to NC_022775 (Lactobacillus phage phiJB, complete genome) position: , mismatch: 1, identity: 0.972

cacttatttggacgacaagctgggctttacgaccaa	CRISPR spacer
cacttatttggacgataagctgggctttacgaccaa	Protospacer
***************.********************

3. spacer 2.5|916472|36|NZ_CP023139|PILER-CR,CRISPRCasFinder,CRT matches to CP031025 (Lactobacillus phage ViSo-2018b, partial genome) position: , mismatch: 2, identity: 0.944

cacttatttggacgacaagctgggctttacgaccaa	CRISPR spacer
gacctatttggacgacaagctgggctttacgaccaa	Protospacer
 **.********************************

4. spacer 4.4|1946031|24|NZ_CP023139|CRT matches to NZ_CP024394 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-2) position: , mismatch: 3, identity: 0.875

agtgctcttagctaccttcttagt	CRISPR spacer
cgtgctcttagctaccttcctatt	Protospacer
 ******************.** *

5. spacer 4.4|1946031|24|NZ_CP023139|CRT matches to NZ_CP024319 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-lp23, complete sequence) position: , mismatch: 3, identity: 0.875

agtgctcttagctaccttcttagt	CRISPR spacer
cgtgctcttagctaccttcctatt	Protospacer
 ******************.** *

6. spacer 4.4|1946031|24|NZ_CP023139|CRT matches to NZ_CP024396 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp29, complete sequence) position: , mismatch: 3, identity: 0.875

agtgctcttagctaccttcttagt	CRISPR spacer
cgtgctcttagctaccttcctatt	Protospacer
 ******************.** *

7. spacer 4.4|1946031|24|NZ_CP023139|CRT matches to NZ_CP024212 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-5) position: , mismatch: 3, identity: 0.875

agtgctcttagctaccttcttagt	CRISPR spacer
cgtgctcttagctaccttcctatt	Protospacer
 ******************.** *

8. spacer 4.4|1946031|24|NZ_CP023139|CRT matches to NZ_CP024354 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp41-1, complete sequence) position: , mismatch: 3, identity: 0.875

agtgctcttagctaccttcttagt	CRISPR spacer
cgtgctcttagctaccttcctatt	Protospacer
 ******************.** *

9. spacer 4.4|1946031|24|NZ_CP023139|CRT matches to NZ_CP024359 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-5) position: , mismatch: 3, identity: 0.875

agtgctcttagctaccttcttagt	CRISPR spacer
cgtgctcttagctaccttcctatt	Protospacer
 ******************.** *

10. spacer 2.6|916541|35|NZ_CP023139|PILER-CR,CRISPRCasFinder,CRT matches to EF455602 (Lactobacillus phage LL-H, complete genome) position: , mismatch: 6, identity: 0.829

actgattctgcaggcgatggcaatgatgcactgga	CRISPR spacer
accgataaaacaggcgatggcaatgatgcgctgga	Protospacer
**.***   .*******************.*****

11. spacer 2.6|916541|35|NZ_CP023139|PILER-CR,CRISPRCasFinder,CRT matches to CP031025 (Lactobacillus phage ViSo-2018b, partial genome) position: , mismatch: 8, identity: 0.771

actgattctgcaggcgatggcaatgatgcactgga	CRISPR spacer
gccgataaaacaggcgatggtaatgatacactgga	Protospacer
.*.***   .**********.******.*******

12. spacer 4.7|1946145|30|NZ_CP023139|CRT matches to LR745207 (uncultured phage genome assembly, chromosome: 1) position: , mismatch: 9, identity: 0.7

agttgacttctttgcagccttcttagttga	CRISPR spacer
cgttgacatctttgcagccttctggccatt	Protospacer
 ****** *************** . .   

13. spacer 4.7|1946145|30|NZ_CP023139|CRT matches to MN694726 (Marine virus AFVG_250M757, complete genome) position: , mismatch: 9, identity: 0.7

agttgacttctttgcagccttcttagttga	CRISPR spacer
ttttgatttctttgcagccttctcgcatcg	Protospacer
  ****.****************..  * .

14. spacer 4.10|1946265|30|NZ_CP023139|CRT matches to KY554772 (Lactococcus phage AM5, complete genome) position: , mismatch: 9, identity: 0.7

agtgctcttcttagtgctcttcttagctga	CRISPR spacer
tgacttcttcttagtgcccttcttaggctt	Protospacer
 *  .************.******** .  

15. spacer 4.10|1946265|30|NZ_CP023139|CRT matches to NC_049856 (Lactococcus phage AM4, complete genome) position: , mismatch: 9, identity: 0.7

agtgctcttcttagtgctcttcttagctga	CRISPR spacer
tgacttcttcttagtgcccttcttaggctt	Protospacer
 *  .************.******** .  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 15896 : 195006 158 unidentified_phage(17.02%) protease,integrase,transposase attL 78071:78130|attR 142615:143982
DBSCAN-SWA_2 211526 : 283474 56 Enterococcus_phage(14.29%) tRNA,integrase,transposase attL 249243:249302|attR 258694:260061
DBSCAN-SWA_3 292640 : 345205 49 Planktothrix_phage(15.79%) bacteriocin,transposase NA
DBSCAN-SWA_4 434263 : 490067 41 unidentified_phage(23.08%) tRNA,transposase NA
DBSCAN-SWA_5 493573 : 626163 115 Streptococcus_phage(11.54%) protease,tRNA,transposase NA
DBSCAN-SWA_6 768295 : 885358 95 unidentified_phage(11.11%) protease,tRNA,transposase NA
DBSCAN-SWA_7 922286 : 1068595 114 Bacillus_phage(18.52%) tRNA,transposase NA
DBSCAN-SWA_8 1073408 : 1147223 60 unidentified_phage(26.67%) integrase,transposase attL 1073270:1073329|attR 1151872:1153116
DBSCAN-SWA_9 1152010 : 1289978 108 unidentified_phage(18.18%) protease,tRNA,integrase,transposase attL 1151873:1151932|attR 1224446:1225687
DBSCAN-SWA_10 1301388 : 1366659 53 Bacillus_phage(16.67%) protease,tRNA,integrase,transposase attL 1316061:1316078|attR 1347915:1347932
DBSCAN-SWA_11 1395118 : 1458351 52 uncultured_virus(25.0%) protease,tRNA,transposase NA
DBSCAN-SWA_12 1467410 : 1529448 58 Prochlorococcus_phage(15.0%) tRNA,transposase NA
DBSCAN-SWA_13 1532691 : 1606616 58 Staphylococcus_phage(20.0%) tRNA,transposase NA
DBSCAN-SWA_14 1626767 : 1687496 59 Streptococcus_phage(30.77%) tRNA,transposase NA
DBSCAN-SWA_15 1746021 : 1801931 33 unidentified_phage(25.0%) transposase NA
DBSCAN-SWA_16 1815640 : 1876864 45 Streptococcus_phage(33.33%) tRNA,transposase NA
DBSCAN-SWA_17 1905541 : 1948077 34 unidentified_phage(28.57%) transposase,protease NA
DBSCAN-SWA_18 1954587 : 2002684 45 uncultured_virus(12.5%) transposase NA
DBSCAN-SWA_19 2021011 : 2080193 55 Streptococcus_phage(14.29%) transposase NA
DBSCAN-SWA_20 2093905 : 2152259 41 Staphylococcus_phage(23.08%) transposase,protease NA
DBSCAN-SWA_21 2170572 : 2227530 51 Bacillus_phage(20.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage