CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP016303	Candidatus Hamiltonella defensa (Bemisia tabaci) strain MEAM1, complete genome	4 crisprs	cas3,DEDDh	3	1	6	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP016303_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016303_1

168642-168743

Orphan

Consensus_repeat	Method
AATAAGCTAGTGGTTTAAAAATAGATTTCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016303_1

>merge|NZ_CP016303|1|168642-168743|CRISPRCasFinder
AATAAGCTAGTGGTTTAAAAATAGATTTCGGATAATAGGTCACTTGACAGCCCCCTCCCTGTAAAATGTTAAATAAGCTATTGGTTTAAAAATAGATTTCGG

>NZ_CP016303|1|1|168642-168743|CRISPRCasFinder
AATAAGCTAGTGGTTTAAAAATAGATTTCGG	ATAATAGGTCACTTGACAGCCCCCTCCCTGTAAAATGTTA
AATAAGCTATTGGTTTAAAAATAGATTTCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016303.1\|WP_046493890.1\|167793_168639_-\|phospholipase-A	unknown	unknown	gnl\|CDD\|182708
NZ_CP016303.1\|WP_046493878.1\|162947_164135_-\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	unknown	unknown	gnl\|CDD\|235472
NZ_CP016303.1\|WP_046493559.1\|184856_186047_-\|tyrosine-transporter-TyrP	unknown	unknown	gnl\|CDD\|185086
NZ_CP016303.1\|WP_016857229.1\|177816_180165_-\|ribonuclease-R	unknown	unknown	gnl\|CDD\|236944
NZ_CP016303.1\|WP_016857227.1\|176462_177020_-\|YcbK-family-protein	unknown	unknown	gnl\|CDD\|225650
NZ_CP016303.1\|WP_016857235.1\|187251_189540_-\|ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|181649
NZ_CP016303.1\|WP_016857228.1\|177080_177824_-\|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	unknown	unknown	gnl\|CDD\|183021
NZ_CP016303.1\|WP_046493874.1\|158664_159639_+\|tRNA-5-methoxyuridine(34)/uridine-5-oxyacetic-acid(34)-synthase-CmoB	unknown	unknown	gnl\|CDD\|237898
NZ_CP016303.1\|WP_157727279.1\|169180_169453_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372648
NZ_CP016303.1\|WP_046493558.1\|181803_182427_+\|SH3-domain-containing-protein	unknown	unknown	gnl\|CDD\|182809
NZ_CP016303.1\|WP_016857232.1\|182858_184781_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224720
NZ_CP016303.1\|WP_016857234.1\|186085_187216_-\|ribonucleotide-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|181647
NZ_CP016303.1\|WP_046493882.1\|165586_166447_-\|elongation-factor-Ts	unknown	unknown	gnl\|CDD\|236491
NZ_CP016303.1\|WP_046493884.1\|166488_167214_-\|30S-ribosomal-protein-S2	unknown	unknown	gnl\|CDD\|235396
NZ_CP016303.1\|WP_046493888.1\|164240_164798_-\|ribosome-recycling-factor	unknown	unknown	gnl\|CDD\|178850
NZ_CP016303.1\|WP_046493880.1\|164850_165582_-\|UMP-kinase	unknown	unknown	gnl\|CDD\|239787
NZ_CP016303.1\|WP_016857230.1\|180241_181552_-\|adenylosuccinate-synthase	unknown	unknown	gnl\|CDD\|234904
NZ_CP016303.1\|WP_046493876.1\|159900_162567_-\|aconitate-hydratase-AcnA	unknown	unknown	gnl\|CDD\|236445
NZ_CP016303.1\|WP_016856685.1\|156665_157436_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016303.1\|WP_046493872.1\|157893_158661_+\|carboxy-S-adenosyl-L-methionine-synthase-CmoA	unknown	unknown	gnl\|CDD\|273244

Protein	Function_ID	Function_description	E-value
NZ_CP016303.1\|WP_046493890.1\|167793_168639_-\|phospholipase-A	gnl\|CDD\|182708	PRK10763, PRK10763, phospholipase A; Provisional.	7.32146e-171
NZ_CP016303.1\|WP_046493878.1\|162947_164135_-\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	gnl\|CDD\|235472	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional.	0
NZ_CP016303.1\|WP_046493559.1\|184856_186047_-\|tyrosine-transporter-TyrP	gnl\|CDD\|185086	PRK15132, PRK15132, tyrosine transporter TyrP; Provisional.	0
NZ_CP016303.1\|WP_016857229.1\|177816_180165_-\|ribonuclease-R	gnl\|CDD\|236944	PRK11642, PRK11642, ribonuclease R.	0
NZ_CP016303.1\|WP_016857227.1\|176462_177020_-\|YcbK-family-protein	gnl\|CDD\|225650	COG3108, COG3108, Uncharacterized protein conserved in bacteria [Function unknown].	3.92846e-72
NZ_CP016303.1\|WP_016857235.1\|187251_189540_-\|ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|181649	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha.	0
NZ_CP016303.1\|WP_016857228.1\|177080_177824_-\|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	gnl\|CDD\|183021	PRK11181, PRK11181, 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB.	4.84531e-147
NZ_CP016303.1\|WP_046493874.1\|158664_159639_+\|tRNA-5-methoxyuridine(34)/uridine-5-oxyacetic-acid(34)-synthase-CmoB	gnl\|CDD\|237898	PRK15068, PRK15068, tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB.	0
NZ_CP016303.1\|WP_157727279.1\|169180_169453_-\|hypothetical-protein	gnl\|CDD\|372648	pfam13612, DDE_Tnp_1_3, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contains three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	2.2838e-19
NZ_CP016303.1\|WP_046493558.1\|181803_182427_+\|SH3-domain-containing-protein	gnl\|CDD\|182809	PRK10884, PRK10884, SH3 domain-containing protein; Provisional.	2.68446e-118
NZ_CP016303.1\|WP_016857232.1\|182858_184781_+\|hypothetical-protein	gnl\|CDD\|224720	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane].	6.54641e-15
NZ_CP016303.1\|WP_016857234.1\|186085_187216_-\|ribonucleotide-diphosphate-reductase-subunit-beta	gnl\|CDD\|181647	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed.	0
NZ_CP016303.1\|WP_046493882.1\|165586_166447_-\|elongation-factor-Ts	gnl\|CDD\|236491	PRK09377, tsf, elongation factor Ts; Provisional.	2.0624e-146
NZ_CP016303.1\|WP_046493884.1\|166488_167214_-\|30S-ribosomal-protein-S2	gnl\|CDD\|235396	PRK05299, rpsB, 30S ribosomal protein S2; Provisional.	7.87685e-164
NZ_CP016303.1\|WP_046493888.1\|164240_164798_-\|ribosome-recycling-factor	gnl\|CDD\|178850	PRK00083, frr, ribosome recycling factor; Reviewed.	9.3686e-91
NZ_CP016303.1\|WP_046493880.1\|164850_165582_-\|UMP-kinase	gnl\|CDD\|239787	cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).	2.13125e-138
NZ_CP016303.1\|WP_016857230.1\|180241_181552_-\|adenylosuccinate-synthase	gnl\|CDD\|234904	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional.	0
NZ_CP016303.1\|WP_046493876.1\|159900_162567_-\|aconitate-hydratase-AcnA	gnl\|CDD\|236445	PRK09277, PRK09277, aconitate hydratase AcnA.	0
NZ_CP016303.1\|WP_046493872.1\|157893_158661_+\|carboxy-S-adenosyl-L-methionine-synthase-CmoA	gnl\|CDD\|273244	TIGR00740, tRNA_cmo5U34-methyltransferase, tRNA (cmo5U34)-methyltransferase. This tRNA methyltransferase is involved, together with cmoB, in preparing the uridine-5-oxyacetic acid (cmo5U) at position 34. [Unknown function, Enzymes of unknown specificity].	6.33965e-129

>NZ_CP016303.1|WP_046493890.1|167793_168639_-|phospholipase-A
MICFVTGAFSLCDAQELTSAEMSDKEVKKKGIVANLLHDEGNVFYLYSYEKNFLLYTFTNHINKKAISKYSWAEKSKNNELLFQFSVGFPIWRGIIGDNSLLGASYTQRSWWQMLNIQESSPFRETNYEPQLFLGWATHYKLAGWVLRDIQIGINHQSNGRSQGTSRSWNRVFLKLMAQNGKWQIDVMPWLRVGKIEDNPDISKYMGYYSLKTSYKLEANEISVETRYNWNSGYGGVNIGWSHNISSNLALYTQLFSGYGESLIDYNHRQTRFGIGFTLKI
>NZ_CP016303.1|WP_046493884.1|166488_167214_-|30S-ribosomal-protein-S2
MVAISMREMLEAGVHFGHKTRYWNPKMKPFIFGARNGIHIINLEFTVTMLNNALSELRKISARKGKILFVGTKRAASEEIKEAAGNCAQFFVHHRWLGGMLTNWKTVRQSIKRLKDLETQSQDGTFEKLTKKEALMRTRELNKLEKSLGGIKNMGGLPDALFVIDANREHIAVKEANNLGIPVFSIVDTNSDPDGIDFIIPGNDDAIRSIKLYLNAVSAAISEGRSENSVMQKEESLIETQ
>NZ_CP016303.1|WP_046493882.1|165586_166447_-|elongation-factor-Ts
MAHISATLVKELRERTGAGMMECKKALVETQGDIELAIDNMRKSGQAKAAKKSGRVASEGVILLEISSEQKLGAILELNCETDFVAKDASFKSFAEEIISTALKEKITSSELLKAKFEEQRTALVAKIGENINIRRIAMLEAEVLGSYLHGARIGVLVSAVGADQKCLKNLAMHIAASKPEYVHPEDVPSEVVNREHQVQLDIAMQSGKPRNIAEKMVSGRMKKFTGEISLTGQNFVMEPTKTVGDWLEEHGATVLNFIRFEVGEGIEKSTTNFADEVAAISKREV
>NZ_CP016303.1|WP_046493880.1|164850_165582_-|UMP-kinase
MAVKPIYQRILLKLSGEALQGKEGFGIDATILDRIAKEIKELVELNMQVALVIGGGNLFRGAGLAKAGMNRVVGDHMGMLATVMNGLAMRDALNRAGVNTGLMSAIPLNGVCDSYSWTDAIKLLNRKRVVIFTSGTGNPFFTTDSAACLRGIEIEAEVVLKATKVDGVYSEDPMKNPHAKFYPELTYEDVLDSELKIMDLAAFTLARDYQLPIKIFNMNKPGALKRVVIGEKEGTLIHQKRMK
>NZ_CP016303.1|WP_046493888.1|164240_164798_-|ribosome-recycling-factor
MISKIETETQSRMEKCTESFESQIKKIRTGRASPSILDSIQVDYYGASTPLRQLANIVAEDSSHLAVTVFDRNLTPYIEKAIQNSPLGLNPSSAANLIRVPLPPLTEERRKELIKVIRSEAEAARVAVRNIRASVNKKSKETLKKKEISEDEDRQIQDNVQKLTDRYIKKIDEFLTKKEKEVMTV
>NZ_CP016303.1|WP_046493878.1|162947_164135_-|1-deoxy-D-xylulose-5-phosphate-reductoisomerase
MKQLAILGSTGSIGCSTLAVVRTNPHLFSVTALVASSNVQRMAKQCEEFHPRYASMSNEKLAQELRLLLAKKNIKTEVFSGSKAACELAMLTEVDQVMSAIVGVAGLPPTLAAIRAGKKVLLANKESLITCGRIFMNAVKKYGAQLLPIDSEHNAIFQSLPQKIQRELGNLSLSENGVSSIILTGSGGSLRDIPLKEFSRITPEKACAHPNWSMGKKISVDSATMMNKGLEYIEARWLFNASDQQIEILLHPQSVIHSMVCYKDGSILAQLGAPDMRTPIAHAMAYPERINSGSPTLDFYSMNALTFSKPDPARYPCLQLAIHAFKSGQSATTILNAANEVAVEAFLNTKIRFTDIAMINQKVLDQLSLPEPRDVQEVLDIDRQARQKAEKILLA
>NZ_CP016303.1|WP_046493876.1|159900_162567_-|aconitate-hydratase-AcnA
MSLSDLQQKSVAELVVADRRYYYYSLPEIQPLIGPIEHLPKSLKILLENLLRHLDTQSVQPDDIHAMASWLKTGHVDREIAYRPARVLMQDFTGVPAIVDLAAMRAAVAELGGEVSQVTPLSPVDLVIDHSVTVDQSGHEQAFKQNVFLEMARNEERYSFLRWGQQAFHRLRVVPPGTGICHQVNLEYLGQTVWSEQQGSRLVIYPDTVVGTDSHTTMINSLGILGWGVGGIEAEAAMLGQPISMLIPDVVGLKLTGHLRSGITATDLVLTVTEMLREYGVVDKFVEFYGNGLVHLSLADRATIANMTPEYGATCGFFPVDEVTLQYLRLTGRSDEQIALVEAYTKAQGMWRYPDDEPVFSSRLELDMSTVEASLAGPKRPQDRVKLSQVPHVFAQFCHQTECLPSSEIPLNHQNVQNGAVVIAAITSCTNTSNPSVMMAAGLLAKKAYEKGIKTKPWVKTSLAPGSKVVTEYLNAAGLSPYLNYLGFNLVGYGCTTCIGNSGALSEHVEQAIQSRQLTVAAVLSGNRNFEGRIHPLVKANWLASPPLVVAYALAGNMSIDLDHDPLGQDKSGNPVYLKDVWPSSTEIAEAVQKVTTTMFRQEYAQVFAGDASWQSIEVMKSPTYAWQEHSTYIRHPPYFKGMSITPDPITDIKKARILAILGDSVTTDHISPAGNIKQNSSAGHYLQAQGVDIKDFNSYGSRRGNHEVMMRGTFANIRIRNEMVPGIEGGMTRHIPSQHQMSIYDAAMLYEQEKVPLVVIAGKEYGSGSSRDWAAKGPRLLGIRAVIAESFERIHRSNLIGMGILPLEFLSGTDRLSLSLTGNEWIDIKGLSHLTPGQDISVILTYPDAQKKEIKTRCRIDTHNELLYFKNGGILHYVIRKILSGNP
>NZ_CP016303.1|WP_046493874.1|158664_159639_+|tRNA-5-methoxyuridine(34)/uridine-5-oxyacetic-acid(34)-synthase-CmoB
MTEFSHFYQWIVNNPFEIWLNTLPSQLTAWRLSVLKNPKEKAWLNTVQGLPELLPSCLNLLDRIQADISPPISEGLQKGIENRLKALMPWRKGPFSLYGIHIDSEWRSNYKWKRILPHLDSLVGKKVLDVGCGNGYHLWHMLGAGARLAIGVEPMPLFFFQFMAVKKLLGEALKAQILPLRIENIAPVEAFDTVFSMGVLYHRRSPLDHLYQLKNQLRSSGQLVLETLVIDGNDQQVLIPEKEYAKMRNVYFIPSVSLLKVFLKKCGFIDVRLVDVTASSTDEQRRTCWMTSESLLDFLDPEDHSKTIEGYPAPFRAILTACKP
>NZ_CP016303.1|WP_046493872.1|157893_158661_+|carboxy-S-adenosyl-L-methionine-synthase-CmoA
MVLSSKNDQPDHLFAAPIAKLGDWAFDEQVAAVFPNMITRSIPGYTNIITMIGMLSKRFVKPHTQIYDLGCSHGAACLSIYPNILDIPGCKIIAVEESPAMIKYCRENLMAHCDQIPVEIIEDDILNITIDNASMVILNFTLQFLDPGHRQNVLNRIYQGLNPGGILVLSEKFHFEDPDIGPLLFDMHHDFKRANGYSDLEISQKNTMLKNVMRVDSVKTHQNRLRQAGFEHMDLWFQCFNFGSLLALKTSSSND
>NZ_CP016303.1|WP_016856685.1|156665_157436_-|hypothetical-protein
MGIDAARALTTINKGCSSIEIPLKETTKPYGTLHPREVKNNTNKVGNSKTHDYPEDKDPFSENIPTKPLDCNTRSLNPFDDDKDDSETDSSSGSPYPSGKNPFSENDGDNHQIITKSTSKNPFGDDEDYSETHSFSETDVDLPASTEAESLDKQNPFWADMQLDTENIIFFKKIADQFLEDLNNKYLNQNLKKHSDNLKKRLDNFIQPSRNENKFEWIPEKEPKTKEEFDDIIKTIKETSKKSGQLYNIAEIFEKK
>NZ_CP016303.1|WP_157727279.1|169180_169453_-|hypothetical-protein
MKGTCTGLSIVDSIPIAVCKLFLSKLHRVFEASLNSEKLQQEGFLDLNDILIIHHLGEIPSIRFTRGNVDDRMTAPDLGKNITGQIYADN
>NZ_CP016303.1|WP_016857227.1|176462_177020_-|YcbK-family-protein
MDKIDMHRRKWFILGGAFLGSALLSPLGLAASSPKPRILQINHTHTGEFIKTEFFDGRKYNKKGLSRLNYIFRDFRANKLKSIDYQLFNQLYRLQNLLGTSKPIQLISGYRTKKTNNSLRKSSSAVAINSFHTLGRAVDFYIEGIPLNKIYRAALRMRAGGVGYYPKSHFIHIDTGPVRNWSSYQ
>NZ_CP016303.1|WP_016857228.1|177080_177824_-|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB
MSDIIYGFHSIKAFLEHHPERFLEIFVLQNNDSYRLQSLVKELKSAGLSILFTSRQYLDVQTGGGVHQGIMAKVGSAHQYQENELPALLNSLDTPFVLVLDGITDPHNLGACLRSAEASGVQIVILPRDRSAPLNATVKKAASGAAENIPVIRVTNLARTLRVLKEYHLLIIGTAGEAKKTLYEARMTGSMALVMGSEEKGLRRLTREHCDHLIRIPMLGRVSSLNVSVATGICLFEAVRQRNMTKI
>NZ_CP016303.1|WP_016857229.1|177816_180165_-|ribonuclease-R
MSQDPFFEREAKKYESPIPSREFILAHLAQRETPVSRIELANDLNLSGEASLEALRRRLKAMERDGQLVFTRRQCYALPERLDLLKGMVIGHRDGFGFLRVEGSKDDLYLSAEQMKKAIHGDVVLVQPLNPDRKGRREARIVRVLVPKKSQIVGRYFVDAGVGFVVPDDARLSFDILIPSEHAQSARMGFLVVVELTQRATYCSKAVGKIIEILGENMGTGIAVDMALRTHEIPYLWSDEIKKEIGQLKGEVPEEAKQGRVDLRALPLMTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPNTALDDEAKNRSNSVYFPSQVIPMLPEILSNGLCSLNPSVDRLSMVCEMTLSAQGKLSSYRFYEATIKSHARLTYTKVWRILDGEQSLRDQYQPLIPHLEELYAMYKMLDRAREQRGGIAFETEEAKFIFNEQMRIKRIEPLLRNDAHKLIEECMILANIAAARFVEKQKKPVLFRVHDRPSDDAMTGLRSVLGELSLALGGDLKPQPKDYAELMCKIADRPDQQMLQTMLLRSMKQAVYDPENRGHFGLALSSYGHFTSPIRRYPDLVMHRAIKYLLWKTSNEQNTKQQDPLKTRSTPTGGWHSTYEEMLELGQHASMAERRADEATRNVADWLKCDFMRDQVGNVFIGIITTVTGFGFFVRLDDFLIDGLVHVSSLDNDYYRYDSIGQRMIGESSGILYRLGDTVKVRVEAVNMDQRKIDFSLVSSDRKPQVKGKTARENAKKTKMKNTKTPPQKKRTRTNPKKTTIKKDDE
>NZ_CP016303.1|WP_016857230.1|180241_181552_-|adenylosuccinate-synthase
MGKNIVVLGAQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTLIIKGKKTVLHLIPSGILRNNTINIIGNGVVLEPHALIKEIKELEMQGVPVRNRLLLSAACPLILPYHVALDNEREKARGSKAIGTTGRGIGPAYEDKVARRALRLGDLFNQITFESQLKEVIEYHNFQLVHYYKAEPVHYQSVVESIWGIADILKNMVIDVTQVLSQAREKAENLLFEGAQGTFLDIDHGTYPYVTSSNTTVGSVATGAGFGPLYIDYILGIVKAYSTRVGAGPFPTELNDETGNFLRDKGHEYGATTGRRRRTGWLDAVSLRQAVQMNSLSGLCMTKLDVLDGLKTVKICVRYKRTDGTETMSTPITSAEWAEVEPIYEALPGWEESTFGIKEKSQLPQTALNYIKRVEELTGVPVDMISTGPDREETIILRHPFDEMIKK
>NZ_CP016303.1|WP_046493558.1|181803_182427_+|SH3-domain-containing-protein
MQKRHCIYLAILSLTISLSAQAAEEERYISDNLTTYVHSGPGDEYRILGVLKAGEPVTLLDVNTTTQYAQIRDKKGRVVWLPAKQLSQVPSQLSRLPDLEQKIKNLTDQLNDTHHRLKERSQEIQEKIALSEKLIEELKSENKGLKEQLTIRNQQINEIENKTNAEKNNIMMKWFTYGGMVAGTGFILGLLLPFLIPRRKRNHRWMD
>NZ_CP016303.1|WP_016857232.1|182858_184781_+|hypothetical-protein
MYILFFFYVLLGIFGRFPWKADEPYFFDISWNMVIHNAWLVPHVGDFPFMEKPPFMAWIGAFFIKILPFLPAHESSRFAVVLCICITVWAFLLASRCLHEEISCKKCGPNLTTMPILGNWQMNALCLLVGTLGFVEHIHKFTADLGQLAGAMMALSALILVASPTSEKRPGYYGSLFGSGIGVAFLSKGLFILCILVLSVCIFLVAFSDFRHRLSLKFSFFSTLTASPFLLIWPWLIYRTHPNLFNEWFWVNNIGRFSGSARLGGNDVTYVNKFVSILFNGAPTSLFLLAGLALLLFRLLRSWSCKLKTTQEKNSIYPAIKTRGYYVAIVFLITGLCTLFVSASMRDIYLLPILPAMILVALPFLHLMESINLKWQKGLNIFFFMMLLIILMTWINLGYNGEARLLGLIWNNVSDVLLLPFVLHTNGMLVALVCFLIICWCRVVRQNDKNIIRSWGCGLAILWSTTALLLIPWIDASRSYEQTFLSMNSVMANHNGCLITEGLGESEIGMLHYVTSKAGISMTFFEKKYSNITENSTLDLFENRSESCELDSPEAATRPPGWCTKADRDGKHTGLSGKVKEKLQPAADFLTSALLPRCAFLLVLDEIKFPQKNISPIWTPIWSGGRPTDEKGFTLYYKGL
>NZ_CP016303.1|WP_046493559.1|184856_186047_-|tyrosine-transporter-TyrP
MKNRTLGSILIVAGTTIGAGMLAMPLATAGVGFGATLLILILIWLLMSYTALLFLEVYQHHPIQTGLAALAKCYLGKIGYGITGFNMLFLMYALTSAYISGAGELIASAISSWTGQSFSSVGGVLIFTLIGGAVVCVGTHSVDFFNRILFSAKIIFLILMLAVMAPHIRIPHLLTLPLQQGLVLSAIPIIFTSFGFHGSIPSIVHYMGGHVRKLRCVFIVGSAIPLIAYIFWQLVTLGSISSETFIGILAQKTGLNALLEAARTVLNFSHVEVTLHLFSDFALVTSFLGVALGLFDYLADLFKRSDTAKGRFQTGVMTFLPPLIFALFYPNGFIMALGFAAIALAVLALILPALMVWKVRKIHQGNYQVWGGKPGLLLVLCCGFAVMGFQIDSVVL
>NZ_CP016303.1|WP_016857234.1|186085_187216_-|ribonucleotide-diphosphate-reductase-subunit-beta
MGYTTFSQKKNNQLLEPMFLGQTVNVARYDQQKYPIFEELIEKQLSFFWRPEEIDVSRDRIDYQSLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWAFSETIHSRSYTHIIRNIVNDPNCIFDDIVTNKEILKRAKDISAYYDDLIKMTSYYHLLDEGTHQVNGKTTVVNLHALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIKLIARDEALHLMGTQHMLDLMRSGKDDPEMADIAQECQKECSDLFLLAAQQEKEWAAYLFRDGSMIGLNQDILCQYIEYMTNIRMQAVKLDAPFSIRTNPIPWINSWLVSDNVQVAPQEVEVSSYLVGQIDAEIDSNDLKDFQL
>NZ_CP016303.1|WP_016857235.1|187251_189540_-|ribonucleoside-diphosphate-reductase-subunit-alpha
MNHSLLVTKRDGRKESIDLDKIHRVINWAAEGLNHVSVSQVELRSQIQFYDGIKTEEIHETMIKAAADLISCEAPDYQYLAARLAIFHLRKKAYGRFEPPPLFEHVSKMVKMGKYDPHLLEDYSEDEFAQMDECIDHWRDMTFSYAAVKQLEGKYLVQNRVNHQIYESAQFLYILVSACLFSRYPASTRLDYIKRFYHAISTFKISLPTPIMAGVRTPTRQFSSCVLIECGDSLDSINATASAIVKYVSQRAGIGVNAGAIRAQGSPIRSGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATVFYPLWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYQRLLKGEEITLFSPSDVPGLYAAFFSDQSEFHRLYVQYEADPDIRHKKIKAVELFSLLMQERASTGRIYIQNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTAPLNNINDENGEIALCTLSAFNLGAINSLDELQELATLSVRALDALLDYQHYPIPAAQRSAVSRRTLGIGVINFAYYLARNGVRYSDGSANNLTHRTFEAIQYYLLRASNDLAREQGACPWFDQTRYAKGILPIDTYKKDLDDIHQEPLHYDWASLRQDILKFGLRHSTLSSLMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPEYEALKEAYELLWNIPDNDGYLQLVGLMQKFVDQSISANTNYDPRRFSNGKVPMKQLLTDLLTAYKWGIKTLYYHNTRDGADDVQGNVKENLSMDDECSSGGCKI

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Crispr_ID: NZ_CP016303_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016303_2

526617-526826

Orphan

Consensus_repeat	Method
AGAACCCGAGGAAGAACC	CRT

5 spacers

The CRISPR arrays of NZ_CP016303_2

>merge|NZ_CP016303|2|526617-526826|CRT
AGAACTCGAGGAAGAACTCGAGGAAGAACCCGAAGAAGAACCCGAAGAAGAACCCGAAGAAGAACCCGAGGAAGAACCCGAGGAAGAACCCGAGGAAGAACCTGAGGAAGAACCTGAGGAAGAACCCGAGGAAGAACCTGAGGAAGAACCTGAGGAAGAACCCGAGGAATAACCTGAGGAAGAACCTGAGGAAGAACCTGAGGAAGAACC

>NZ_CP016303|2|1|526617-526826|CRT
AGAACTCGAGGAAGAACT	CGAGGAAGAACCCGAAGA
AGAACCCGAAGAAGAACC	CGAAGAAGAACCCGAGGA
AGAACCCGAGGAAGAACC	CGAGGAAGAACCTGAGGAAGAACCTGAGGA
AGAACCCGAGGAAGAACC	TGAGGAAGAACCTGAGGA
AGAACCCGAGGAATAACC	TGAGGAAGAACCTGAGGA
AGAACCTGAGGAAGAACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016303.1\|WP_059108327.1\|528355_528712_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|378457
NZ_CP016303.1\|WP_059108330.1\|525942_526386_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016303.1\|WP_052735025.1\|517945_518425_+\|lysis-protein	unknown	unknown	gnl\|CDD\|281263
NZ_CP016303.1\|WP_052735024.1\|517587_517860_+\|glycoside-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|381599
NZ_CP016303.1\|WP_095591354.1\|528708_529062_+\|phage-tail-assembly-protein	unknown	unknown	gnl\|CDD\|378397
NZ_CP016303.1\|WP_095591325.1\|521190_522429_+\|phage-portal-protein	unknown	unknown	gnl\|CDD\|377413
NZ_CP016303.1\|WP_016858055.1\|523401_524688_+\|phage-major-capsid-protein	unknown	unknown	gnl\|CDD\|273690
NZ_CP016303.1\|WP_095591357.1\|537658_538864_-\|DNA-(cytosine-5-)-methyltransferase	unknown	unknown	gnl\|CDD\|236696
NZ_CP016303.1\|WP_095591356.1\|537079_537526_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016303.1\|WP_095591355.1\|529116_530985_+\|phage-tail-tape-measure-protein	unknown	unknown	gnl\|CDD\|273790
NZ_CP016303.1\|WP_095591323.1\|533971_534379_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377830
NZ_CP016303.1\|WP_082665831.1\|524738_524948_+\|phage-gp6-like-head-tail-connector-protein	unknown	unknown	gnl\|CDD\|153446
NZ_CP016303.1\|WP_095591353.1\|526856_528356_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|226821
NZ_CP016303.1\|WP_095591351.1\|522531_523389_+\|peptidase-S14	unknown	unknown	gnl\|CDD\|132927
NZ_CP016303.1\|WP_029589155.1\|518486_518846_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|238038
NZ_CP016303.1\|WP_016858052.1\|525418_525946_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016303.1\|WP_095591358.1\|539325_539913_+\|peptide-deformylase	unknown	unknown	gnl\|CDD\|234668
NZ_CP016303.1\|WP_157727293.1\|537506_537659_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226250
NZ_CP016303.1\|WP_095591406.1\|536282_536906_+\|tail-fiber-protein	unknown	unknown	gnl\|CDD\|377845
NZ_CP016303.1\|WP_016858053.1\|525048_525432_+\|phage-head-closure-protein	unknown	unknown	gnl\|CDD\|377521

Protein	Function_ID	Function_description	E-value
NZ_CP016303.1\|WP_157727293.1\|537506_537659_-\|hypothetical-protein	gnl\|CDD\|226250	COG3727, Vsr, DNA G:T-mismatch repair endonuclease [DNA replication, recombination, and repair].	0.000876917
NZ_CP016303.1\|WP_052735025.1\|517945_518425_+\|lysis-protein	gnl\|CDD\|281263	pfam03245, Phage_lysis, Bacteriophage Rz lysis protein. This protein is involved in host lysis. This family is not considered to be a peptidase according to the MEROPs database. This family Rz and the Rz1 protein (pfam06085) represent a unique example of two genes located in different reading frames in the same nucleotide sequence, which encode different proteins that are both required in the same physiological pathway.	1.02751e-32
NZ_CP016303.1\|WP_059108327.1\|528355_528712_+\|phage-tail-protein	gnl\|CDD\|378457	pfam10618, Tail_tube, Phage tail tube protein. This bacterial family of proteins contains phage tail tube proteins related to the Mu phage tail tube protein M. Bacteriophage Mu has an eicosahedral head and contractile tail. The tail is composed of an outer sheath and an inner tube.	1.4551e-40
NZ_CP016303.1\|WP_095591354.1\|528708_529062_+\|phage-tail-assembly-protein	gnl\|CDD\|378397	pfam10109, Phage_TAC_7, Phage tail assembly chaperone proteins, E, or 41 or 14. This is family of various Myoviridae bacteriophage tail assembly chaperone, or TAC, proteins.	1.02267e-05
NZ_CP016303.1\|WP_095591325.1\|521190_522429_+\|phage-portal-protein	gnl\|CDD\|377413	pfam04860, Phage_portal, Phage portal protein. Bacteriophage portal proteins form a dodecamer and is located at a five-fold vertex of the viral capsid. The portal complex forms a channel through which the viral DNA is packaged into the capsid, and exits during infection. The portal protein is though to rotate during DNA packaging. Portal proteins from different phage show little sequence homology, so this family does not represent all portal proteins.	2.05546e-102
NZ_CP016303.1\|WP_016858055.1\|523401_524688_+\|phage-major-capsid-protein	gnl\|CDD\|273690	TIGR01554, prophage_Lp3_protein_18, phage major capsid protein, HK97 family. This model family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease. [Mobile and extrachromosomal element functions, Prophage functions].	1.51036e-49
NZ_CP016303.1\|WP_095591357.1\|537658_538864_-\|DNA-(cytosine-5-)-methyltransferase	gnl\|CDD\|236696	PRK10458, PRK10458, DNA cytosine methylase; Provisional.	2.53748e-169
NZ_CP016303.1\|WP_052735024.1\|517587_517860_+\|glycoside-hydrolase-family-protein	gnl\|CDD\|381599	cd00737, lyz_endolysin_autolysin, endolysin and autolysin. The dsDNA phages of eubacteria use endolysins or muralytic enzymes in conjunction with hollin, a small membrane protein, to degrade the peptidoglycan found in bacterial cell walls. Similarly, bacteria produce autolysins to facilitate the biosynthesis of its cell wall heteropolymer peptidoglycan and cell division. Endolysins and autolysins are found in viruses and bacteria, respectively. Both endolysin and autolysin enzymes cleave the glycosidic beta 1,4-bonds between the N-acetylmuramic acid and the N-acetylglucosamine of the peptidoglycan.	3.96253e-22
NZ_CP016303.1\|WP_095591355.1\|529116_530985_+\|phage-tail-tape-measure-protein	gnl\|CDD\|273790	TIGR01760, COG5283:_Phage-related_tail_protein, phage tail tape measure protein, TP901 family, core region. This model represents a reasonably well conserved core region of a family of phage tail proteins. The member from phage TP901-1 was characterized as a tail length tape measure protein in that a shortened form of the protein leads to phage with proportionately shorter tails. [Mobile and extrachromosomal element functions, Prophage functions].	7.50256e-63
NZ_CP016303.1\|WP_095591323.1\|533971_534379_+\|hypothetical-protein	gnl\|CDD\|377830	pfam07409, GP46, Phage protein GP46. This family contains GP46 phage proteins (approximately 120 residues long).	1.66032e-37
NZ_CP016303.1\|WP_082665831.1\|524738_524948_+\|phage-gp6-like-head-tail-connector-protein	gnl\|CDD\|153446	cd08054, gp6, Head-Tail Connector Protein gp6 of Bacteriophage HK97 and similar proteins. The bacteriophage HK97 gp6 protein is critical in the assembly of the connector, a specialized structure that serves as an interface for head and tail attachment, as well as a point at which DNA exits the head during infection by the bacteriophage. It forms a dodecameric ring structure that comprises the middle ring of the connector, located between the portal protein (attached to the head) and the gp7 ring (attached to the tail). It is a component of the mature phage and the absence of HK97 gp6 results in defective head-tail joining and the absence of mature phage particles. Although the crystal structure of HK97 gp6 shows an unexpected 13-mer ring, the biological form present in the mature phage is believed to be a dodecamer.	6.57153e-06
NZ_CP016303.1\|WP_095591353.1\|526856_528356_+\|phage-tail-protein	gnl\|CDD\|226821	COG4386, COG4386, Mu-like prophage tail sheath protein gpL [General function prediction only].	4.84842e-129
NZ_CP016303.1\|WP_095591351.1\|522531_523389_+\|peptidase-S14	gnl\|CDD\|132927	cd07016, S14_ClpP_1, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP, although the proteolytic subunit alone does possess some catalytic activity. Active site consists of the triad Ser, His and Asp; some members have lost all of these active site residues and are therefore inactive, while others may have one or two large insertions. ClpP seems to prefer hydrophobic or non-polar residues at P1 or P1' positions in its substrate. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function.	1.77146e-65
NZ_CP016303.1\|WP_029589155.1\|518486_518846_+\|HNH-endonuclease	gnl\|CDD\|238038	cd00085, HNHc, HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and anaredoxins.	0.000956842
NZ_CP016303.1\|WP_095591358.1\|539325_539913_+\|peptide-deformylase	gnl\|CDD\|234668	PRK00150, def, peptide deformylase; Reviewed.	2.13885e-84
NZ_CP016303.1\|WP_095591406.1\|536282_536906_+\|tail-fiber-protein	gnl\|CDD\|377845	pfam07484, Collar, Phage Tail Collar Domain. This region is occasionally found in conjunction with pfam03335. Most of the family appear to be phage tail proteins; however some appear to be involved in other processes. For instance a member from Rhizobium leguminosarum may be involved in plant-microbe interactions. A related protein MrpB is involved in the pathogenicity of Microcystis aeruginosa. The finding of this family in a structural component of the phage tail fibre baseplate suggests that its function is structural rather than enzymatic. Structural studies show this region consists of a helix and a loop and three beta-strands. This alignment does not catch the third strand as it is separated from the rest of the structure by around 100 residues. This strand is conserved in homologs but the intervening sequence is not. Much of the function of phage T4 appears to reside in this intervening region. In the tertiary structure of the phage baseplate this domain forms part of the 'collar'. The domain may bind SO4, however the residues accredited with this vary between the PDB file and the Swiss-Prot entry. The long unconserved region maybe due to domain swapping in and out of a loop or reflective of rapid evolution.	1.21956e-12
NZ_CP016303.1\|WP_016858053.1\|525048_525432_+\|phage-head-closure-protein	gnl\|CDD\|377521	pfam05521, Phage_H_T_join, Phage head-tail joining protein.	2.46937e-11

>NZ_CP016303.1|WP_059108330.1|525942_526386_+|hypothetical-protein
MKLSPIIATLRHYCPRFENRVGSVAHYEDLPECGKLALPAAYVLPGEEVVGEPRAQNAYWQTLTERFSVLVILHNRRHGSGGQPSVDVLHDVRADLWRALLGWAPDPEGGTIEYAGGQPLEANRAEYHYGFEFQVRTDIHLSRASFS
>NZ_CP016303.1|WP_016858052.1|525418_525946_+|hypothetical-protein
MSLNNLHIEFHQPKDLVFNRLLVRRAFMKIGQRHQEEARRRLMKRGGRSQAGETPRWQTGRLAQSIGYHVPRPASRRPGLMVKIAPNQKRGIGSQDIEGDFYPIFLHHGVRSASYVMPKKDRRHKMHHHTGGWRIAPRNNYMVEALTRLQGWTRTTLLGALKQALRPVRRQGKNA
>NZ_CP016303.1|WP_016858053.1|525048_525432_+|phage-head-closure-protein
MTPHYGRGHSRFPDPGQLNKRILFYTRQDEPIGASGTQAANQGACTVWGKLIPVSDTLRIHSFQINKTVTHKIIVRYRQSLYDSSQAVINGVVYHIRGVTDIHSAGRFLAFSCEETSSQPERGNEFE
>NZ_CP016303.1|WP_082665831.1|524738_524948_+|phage-gp6-like-head-tail-connector-protein
MWINKAQVKRQCRIELDDNSEDMLLDSYIAAVEQKTIAYLNRHLYRESVPETDPDWLSMPRLFRVCCSW
>NZ_CP016303.1|WP_016858055.1|523401_524688_+|phage-major-capsid-protein
MSDMNEMFKKVTASIEEASSQYSAQAEKALKEAQKSGALSAETKSAVDKMAVELNALREAEKTLKAQVGEVEQHIAQMPIANALNVVSSIGQQVVGMEVIQALGSGMESSKRVIAPVNAALISSDVRGTIVAPDRQSDLLTQPKQRLFIRDLIASGKTQSNTIYYVKQKGFTNHARTVAENTAKPYSTIEFEEATVPVRTIAHLFKASKQILDDFSQLASLIDMELRYGLKYVEEQQIFFGDGTGSNLNGIFTQATTFKAELTPSHRTAIDDLRLAMLQAQLARIPATGHVLHFSNWAQIELIKDTLGRYLLSNPAALTTPTLWGLPVVVTEAAGFKDKFLVGAFSLGAQLFDREEANVVISTENTDDFEKNMISIRCEERLALAVYRPEAFIKGNLTQIEVSPSAPSNAGGARKNGQSGNHGGESST
>NZ_CP016303.1|WP_095591351.1|522531_523389_+|peptidase-S14
MKKKALPVLPAVFPCPTMTSEILPSALARWNSRIRASSQDENTLSIFESIGQDWAGEGVTAQRMGAILRSLEGKAVTVNINSPGGDLFEGLTIYNQLREYPGKVTVKILGLAASAASIIAMSGDEIQIGRSAFLMIHNTWGMAVGHRHDFADMAEKMAPFDLAMREIYVARTGMDETTITGMMDRETWMNGGEAIEKGFADALLPADSTQQDNDSPIAALRKLEALLAKANTPRAERRRLLNALRGDMPGDIPPSHGTPRAAHEVSSETWTQLDNALRRLVSIPS
>NZ_CP016303.1|WP_095591325.1|521190_522429_+|phage-portal-protein
MKQHKSPGKIKSALLNWLGVPQNVTETRSSFHDYSQSQSGQVVTADKALQLSAVWACVRLLSESISTLPLKLYHREPDGSRSLAQQHPVYNVLCRRPNLDMTPSRFMQMVVASLCLRGNAFIEKKKIGPRLIALVPRLPQNITVIRRNNGRLEYHDTENPRGDPSLKPRVIADNDMMHIRGFGLDGVCGMMPLKSGREVSGSAMSLETTAARYFQKGMSASGFVTFDRLLSKEQRDTFSKELERFSGSNNTGKVMLLENGMKFNGITLDPQTSQMLESRDHSVEEICRWYRVPPFMVGHITKQSSWASSVEGMNLIFLTNTLRPLLVNIEQEIARCLLENDEDYFAEFSVEGLLRTDSTGRAAYYTTALQNGWMSRNDVRRLENLPPIEGGDLYTVQLNLTPLNQLGQENDG
>NZ_CP016303.1|WP_029589155.1|518486_518846_+|HNH-endonuclease
MKKNKLYGSRWDKARRAFLAKNPLCVMCQAHHLIHPASVVDHIVPHRLRFAQTTEEVKTAQKRFWDEKNWQPLCTQHHNTTKQRMEKSGKGYGCDENGIPNHPNSHWYQGKSDLLIEDL
>NZ_CP016303.1|WP_052735025.1|517945_518425_+|lysis-protein
MFWKLPGMWLVLLASLLSATLYYRHHYQQAEKARQTAVSEIERHQVSLEQLRQKIKTVSQLDAQYNEALEHHKNRVAQLERDVADGRRRLRVKATCPNMSAYSSASRVDDAAPARLADPAQRDYFRLRNRIDIAGQQINGLQDYIRQVCLRDPQARPNP
>NZ_CP016303.1|WP_052735024.1|517587_517860_+|glycoside-hydrolase-family-protein
MVCSGAGCSCDLRSLLFNIGVKAFATSTLLKKLNAGDEQEAAAEFLKWCYGTVKGKKVPLKGLIFRRQQEKARFEAGLMEKESPEFSRCE
>NZ_CP016303.1|WP_095591353.1|526856_528356_+|phage-tail-protein
MSISFNHIASDVRVPLFYAEMDHSRANTAQESRRSLLFGHALEDAPIKRNTPVRMPTEALAQKLTGRGSQLHRMVTAYRRIDPLGELWVIAVPEPKTPGGPAWSCLDLVGTPQAPGVLSLWIGCRRIRVAVSPAQTVDEIADHLTQAINAASDLPVTARLREEGEILLTARHSGPAGRDIPLSTHAVSEGEETSPPGLVLVVDRMNGDYYTADLTAAIAAMGDTPFDFIGLPFHDSDTLALFEQEMNDQSGRWSPYRQLYGHVYTAKKGSLSELAALGDRLNSPHLTVAGYESDTQTALDELVAARLARSAVFLRADPARPTQTGELSGVLPAPVGKRFGLTEQQSLLSHGIATAYVEGGALRIQRDITPYKKNAQGVADNSYLDSETLHTSASVLRRLKSVITSKYGRHKLADDGTRFGAGQAIVTPAVIKAELCAVYRQLEREGMVENFAAFRDHLIVERHAHDPNRLDVLFTPDYVNQLRVFALRHQFRLQYQENV
>NZ_CP016303.1|WP_059108327.1|528355_528712_+|phage-tail-protein
MRKTAGTCYFKVDGQQLTLSGGVEVPMNTVVREDILGLNGEVFYKETHRAPFVKGTFIVERAFPLQKLVSATQMTLTAELANGQVYVLSGAWLSGEANHHTEEGTVDLEFHGQEGFYQ
>NZ_CP016303.1|WP_095591354.1|528708_529062_+|phage-tail-assembly-protein
MTSIALSKPIKVHNETISVLDIQEPTFDQVEKYGIPFSYSERGDMRLDTRSALAYLPELAGIPRSSAQQLALHDVFVASMTLVGFFTSAQNSAVSDDDSTTSPGSGASIPSIYDSVP
>NZ_CP016303.1|WP_095591355.1|529116_530985_+|phage-tail-tape-measure-protein
MADQVELKAIITAVDRLSAPLKGMRREVKTFRQEFRAGMVSAAALGAGVMTAMAGPIKQAIDFESTMADVRKVVEFETPGQFKKMSQDILELSHRLPMAAEGIGQIVAAGGQANIARNELLAFADAAVTMGVAFDQSAAQAGQMMATWRTAFRLTQNEVVSLADKINDLGNNGPANAAKISDIVTRIGPLGAVAGMASGEIAALGATIGGMGVDADVTATGIKKLMLALTSGKSATSLQKKALRFLKIDPSTLAVEMQKDAKGALLRVFDALSQVPKAKQSSVMKALFGSESLGALAPLLTNLERLKVNFDRVADVQKYAGSMQKEYAARAATTANAIQLFKNQIYVASVTIGSIFLPAITKTLNRVRPLIEQCRHWIKAHPELITSLAQWGVYLLGTATAVGVVTRAFKMFNSVMNMSTLGKLVTLMVLGGGLMMEHWEKTGPIVKTVWGHIQDVIRLMGGWETGLKSVAVLTAGSWLLSMGKGLSGAQAEVMKLSKSLKGIASMGVVTVTIAVLFDWMKRLDTLRDEASRQHTNVGTLLVNRLQEAERARGYTGFLPRLKELFNIEGSPPAQLSLASPGPQSGELTVSFHNAPAGMTVQPATQSPAWLNYDVGYNRFARR
>NZ_CP016303.1|WP_095591323.1|533971_534379_+|hypothetical-protein
MMRVNGHPAETVSDPLTRAVIISLFTWRRAEPDDDTDTPMGWWGDTWPTVANDRIGSRLYLLRRSRLTAQTAHKARDHIAQALQWMREDGIVDRTDIAVTRSGLDTLTATLTLTVRQRPPTTLTFDNIWDAIHAT
>NZ_CP016303.1|WP_095591406.1|536282_536906_+|tail-fiber-protein
MPDKAEFIENLGLTETVELAKEAIPYHRKINGKTLIQDVQLTATDVNAVTPETLRLEIPVGVPPLPWPADRPPTGWLLCNGDQFDKTRYPLLASAYPSGQLPDLRGEFIRGADAGRKIDTGRKVLSPQGDAIRNITGQFGYVRQGQWAPWVTATGAFYQTSTFSAAIKRGDPDNWGSVSAFDASRVVPTAHENRPRNVAFNYIVRGA
>NZ_CP016303.1|WP_095591356.1|537079_537526_+|hypothetical-protein
MIKIVMSFCILLLLAILASSISDVRPDGFFSSTIFTIAGILFSIGIGLIVTFKPEGVKNKAYIKELRANILHVRNSFLCHFGLLTASYILNQYLSDPKYESHIIDLTFSFPVFLCLLMLYSSLFFIVNFIAIYKLDNQIFDAVNQEQP
>NZ_CP016303.1|WP_157727293.1|537506_537659_-|hypothetical-protein
MVDVVDPATRSRMMSRIRSGEGHRMGMRPSRYRVQSTVAEGDFGIRVVLD
>NZ_CP016303.1|WP_095591357.1|537658_538864_-|DNA-(cytosine-5-)-methyltransferase
MSAHIPREQDMTHAQPPERLRFMQPMPEPVLRNLLQQPPARTKKVRPCFRFIDLFAGIGGIRMGFDAQGGECVFTSEWNRFSKKTYIENYGDPHPFVGNIVPYPAEDVPDHDVLLAGFPCQPFSIAGVSKKNSLGRPHGFECTTQGTLFFDVARIIATRRPRAFLLENVKNLLSHNKGHTFNVILQTLRDELGYDVHYRVIDGQHFTPQHRERIIIVGFREKTGFSWDDLKLPEEGPRLASILHRTDGTEPVLPWDGARFFDHDRRTVPPRYTLTPNLWAYLQTYADRHRAAGNGFGFGIVYPDSVTRTLSARYHKDGSEILVWQGRNKRPRRLTPRECARLMGFPDAFQIPVSDTQAYRQFGNSVVMPVMQEVARIMTPHVLAQIAHERDGTSPALPLFS
>NZ_CP016303.1|WP_095591358.1|539325_539913_+|peptide-deformylase
MSILQILHFPDDRLRKIASPVKKIDDQIRQIADDMLETMYQAEGIGLAATQVNIHQRIIVIDVSEDRHQPLILINPELLEKSGETGIEEGCLSIPGEKAFIPRAKEITIQALNREGRSFRLSADDLLAICIQHEMDHLIGKLFVDYLSPFKRQRIQKRAKRWKNCKKLIKKKINEPIAQNNLPLSIGFERCLISI

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Click the colored protein region to show detailed information

Crispr_ID: NZ_CP016303_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016303_3

1065517-1065625

Unclear

Consensus_repeat	Method
GACACCAAGGCTACAGAAACCGCCAGTGCCACCAAGAACA	CRISPRCasFinder

1 spacers

cas3,DEDDh

The CRISPR arrays of NZ_CP016303_3

>merge|NZ_CP016303|3|1065517-1065625|CRISPRCasFinder
GACACCAAGGCTACAGAAACCGCCAGTGCCACCAAGAACAGTGGCACCGCAAGCAGCGGAGCTTCAAGCGACACCAAGGCTGCAGAAACCGCCAGTGCCACCAAGAACA

>NZ_CP016303|3|2|1065517-1065625|CRISPRCasFinder
GACACCAAGGCTACAGAAACCGCCAGTGCCACCAAGAACA	GTGGCACCGCAAGCAGCGGAGCTTCAAGC
GACACCAAGGCTGCAGAAACCGCCAGTGCCACCAAGAACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016303.1\|WP_016857482.1\|1068997_1069555_-\|oligoribonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|235429
NZ_CP016303.1\|WP_040056120.1\|1071898_1075231_+\|miniconductance-mechanosensitive-channel-MscM	unknown	unknown	gnl\|CDD\|236798
NZ_CP016303.1\|WP_016857488.1\|1077476_1078196_+\|YggS-family-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|143497
NZ_CP016303.1\|WP_029589049.1\|1075288_1076266_-\|elongation-factor-P--(R)-beta-lysine-ligase	unknown	unknown	gnl\|CDD\|236474
NZ_CP016303.1\|WP_016857483.1\|1069664_1070726_+\|small-ribosomal-subunit-biogenesis-GTPase-RsgA	unknown	unknown	gnl\|CDD\|237039
NZ_CP016303.1\|WP_016857494.1\|1063330_1063765_+\|ubiquinone-binding-protein	unknown	unknown	gnl\|CDD\|182678
NZ_CP016303.1\|WP_016857501.1\|1055702_1056413_-\|Bax-inhibitor-1/YccA-family-protein	unknown	unknown	gnl\|CDD\|198414
NZ_CP016303.1\|WP_016857500.1\|1056635_1057637_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	unknown	unknown	gnl\|CDD\|236585
NZ_CP016303.1\|WP_012738170.1\|1057713_1058778_-\|chorismate-synthase	unknown	unknown	gnl\|CDD\|235438
NZ_CP016303.1\|WP_046493588.1\|1076454_1077456_-\|PilT/PilU-family-type-4a-pilus-ATPase	unknown	unknown	gnl\|CDD\|225364
NZ_CP016303.1\|WP_016857489.1\|1078182_1079010_+\|pyrroline-5-carboxylate-reductase	unknown	unknown	gnl\|CDD\|237008
NZ_CP016303.1\|WP_016857492.1\|1064167_1064566_-\|dihydroneopterin-aldolase	unknown	unknown	gnl\|CDD\|183219
NZ_CP016303.1\|WP_012738172.1\|1060083_1060401_+\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|225038
NZ_CP016303.1\|WP_016857498.1\|1059041_1059980_+\|malate-dehydrogenase	unknown	unknown	gnl\|CDD\|235340
NZ_CP016303.1\|WP_016857496.1\|1062800_1063019_-\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
NZ_CP016303.1\|WP_016857479.1\|1067307_1067757_-\|universal-stress-protein-UspA	unknown	unknown	gnl\|CDD\|185073
NZ_CP016303.1\|WP_016857480.1\|1067840_1068656_-\|glutamate-racemase	unknown	unknown	gnl\|CDD\|234851
NZ_CP016303.1\|WP_029589048.1\|1070741_1071608_+\|phosphatidylserine-decarboxylase	unknown	unknown	gnl\|CDD\|234591
NZ_CP016303.1\|WP_046493586.1\|1054047_1055400_-\|ATP-dependent-RNA-helicase-SrmB	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|236877
NZ_CP016303.1\|WP_016857493.1\|1063906_1064206_+\|50S-ribosomal-protein-L25	unknown	unknown	gnl\|CDD\|180318

Protein	Function_ID	Function_description	E-value
NZ_CP016303.1\|WP_016857482.1\|1068997_1069555_-\|oligoribonuclease	gnl\|CDD\|235429	PRK05359, PRK05359, oligoribonuclease; Provisional.	1.18575e-127
NZ_CP016303.1\|WP_040056120.1\|1071898_1075231_+\|miniconductance-mechanosensitive-channel-MscM	gnl\|CDD\|236798	PRK10929, PRK10929, putative mechanosensitive channel protein; Provisional.	0
NZ_CP016303.1\|WP_016857488.1\|1077476_1078196_+\|YggS-family-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|143497	cd06824, PLPDE_III_Yggs_like, Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.	2.28367e-122
NZ_CP016303.1\|WP_029589049.1\|1075288_1076266_-\|elongation-factor-P--(R)-beta-lysine-ligase	gnl\|CDD\|236474	PRK09350, PRK09350, elongation factor P--(R)-beta-lysine ligase.	0
NZ_CP016303.1\|WP_016857483.1\|1069664_1070726_+\|small-ribosomal-subunit-biogenesis-GTPase-RsgA	gnl\|CDD\|237039	PRK12288, PRK12288, small ribosomal subunit biogenesis GTPase RsgA.	0
NZ_CP016303.1\|WP_016857494.1\|1063330_1063765_+\|ubiquinone-binding-protein	gnl\|CDD\|182678	PRK10724, PRK10724, type II toxin-antitoxin system RatA family toxin.	2.19285e-73
NZ_CP016303.1\|WP_016857501.1\|1055702_1056413_-\|Bax-inhibitor-1/YccA-family-protein	gnl\|CDD\|198414	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins. This family is comprised of bacterial relatives of the mammalian members of the BAX inhibitor (BI)-1 like family of small transmembrane proteins, which have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well-characterized oncogene, or by inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. In plants, BI-1 like proteins play a role in pathogen resistance. A characterized prokaryotic member, Escherichia coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.	3.86408e-73
NZ_CP016303.1\|WP_016857500.1\|1056635_1057637_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	gnl\|CDD\|236585	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD.	0
NZ_CP016303.1\|WP_012738170.1\|1057713_1058778_-\|chorismate-synthase	gnl\|CDD\|235438	PRK05382, PRK05382, chorismate synthase; Validated.	0
NZ_CP016303.1\|WP_046493588.1\|1076454_1077456_-\|PilT/PilU-family-type-4a-pilus-ATPase	gnl\|CDD\|225364	COG2805, PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion].	6.65165e-147
NZ_CP016303.1\|WP_016857489.1\|1078182_1079010_+\|pyrroline-5-carboxylate-reductase	gnl\|CDD\|237008	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed.	3.73095e-95
NZ_CP016303.1\|WP_016857492.1\|1064167_1064566_-\|dihydroneopterin-aldolase	gnl\|CDD\|183219	PRK11593, folB, bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase.	9.03203e-57
NZ_CP016303.1\|WP_012738172.1\|1060083_1060401_+\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|225038	COG2127, COG2127, Uncharacterized conserved protein [Function unknown].	3.78656e-44
NZ_CP016303.1\|WP_016857498.1\|1059041_1059980_+\|malate-dehydrogenase	gnl\|CDD\|235340	PRK05086, PRK05086, malate dehydrogenase; Provisional.	0
NZ_CP016303.1\|WP_016857496.1\|1062800_1063019_-\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	5.53444e-47
NZ_CP016303.1\|WP_016857479.1\|1067307_1067757_-\|universal-stress-protein-UspA	gnl\|CDD\|185073	PRK15118, PRK15118, universal stress protein UspA.	3.06277e-77
NZ_CP016303.1\|WP_016857480.1\|1067840_1068656_-\|glutamate-racemase	gnl\|CDD\|234851	PRK00865, PRK00865, glutamate racemase; Provisional.	4.86355e-114
NZ_CP016303.1\|WP_029589048.1\|1070741_1071608_+\|phosphatidylserine-decarboxylase	gnl\|CDD\|234591	PRK00044, psd, phosphatidylserine decarboxylase; Reviewed.	0
NZ_CP016303.1\|WP_046493586.1\|1054047_1055400_-\|ATP-dependent-RNA-helicase-SrmB	gnl\|CDD\|236877	PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.	0
NZ_CP016303.1\|WP_016857493.1\|1063906_1064206_+\|50S-ribosomal-protein-L25	gnl\|CDD\|180318	PRK05943, PRK05943, 50S ribosomal protein L25; Reviewed.	1.10777e-42

>NZ_CP016303.1|WP_016857492.1|1064167_1064566_-|dihydroneopterin-aldolase
MDILFIEALRIFTLIGVHDWEKTLRQELIFDIKMRYENRKPASSDQVEDCLNYVDICDSVQQHVTKQRFELIERVAEEVADLLLQRFSSPWVWIKVSKPRAVSSAGNVGVIIERSKLATSSDFIRPYEIHMR
>NZ_CP016303.1|WP_016857493.1|1063906_1064206_+|50S-ribosomal-protein-L25
MIVINAKLRQKEEKGTAASRRFRKAGLFPATVYGGSLPPVSIVLDHDVVKNLEANPAFYNEILTLEVGEEKTKVKIQAIQRHPFKPKLTHMDFIRANEI
>NZ_CP016303.1|WP_016857494.1|1063330_1063765_+|ubiquinone-binding-protein
MLGIHRSALIPFSADKMYKLINDVCAYPEFLPGCVGSKVINVTDNEMIAAVKIAKAGIHKTFITRNTLMTNRSINIELIEGPFRALTGSWKLTALSLKACHIDFHLDFEFTNKLLALAFGGLFKDLGENMLEAFTKRAKVIYGV
>NZ_CP016303.1|WP_016857496.1|1062800_1063019_-|translation-initiation-factor-IF-1
MAKEDNIEMQGTVRDALPNAMFRVELENGHHVTAHISGKMRKNYIRILTGDKVTLELTPYDLTKARITFRSR
>NZ_CP016303.1|WP_012738172.1|1060083_1060401_+|ATP-dependent-Clp-protease-adapter-ClpS
MNKNGGLNFEHLLNEQEISAVKPPDMYKVILNNDDYTPMEFVVDVLQNFFSYNLEQATALMLKVHYQGKAICGTFTAEVAETKVASVNQYARENEHPFLCTLEKA
>NZ_CP016303.1|WP_016857498.1|1059041_1059980_+|malate-dehydrogenase
MKIVILGAAGGIGQGLALLLKSQLPAGSELALYDVNSITPGVAVDLSHIPTDVTVNGFSGKDPTLALLGADIVLIAAGIARKPGMARSDLFDVNAGIVQQLTEDIAHTCPKALVGIITNPVNSTVVISAETFKKAGVYNKNKLFGITTLDIIRARSFVAKLKNKVSENIKVPVIGGHSGVTILPLLSQIPDISLTESEIKTLTQSIQNAGTEVVKAKEGGGSATLSMAYAAALFCFSLVRALNGEKGIVEYAYVESDCKQYPRFFAQPVLLNENGIAEYKEIGALSAFEQEHLEKMLYELNKDIELAEQFNQ
>NZ_CP016303.1|WP_012738170.1|1057713_1058778_-|chorismate-synthase
MAGNSIGQIFRVTTFGESHGVALGCIVDGVPPGLWLCENDLQIDLNRRRPGMSPYTSSRRESDQIRILSGIFEGKTTGSSIGLLIENKDARPQDYQSIKDLFRPGHADYTYQKKYGIRDYRGGGRASARETAMRVAAGAIAKKYLFEHFSIEIQGYLSQIGTICCEFKEKECIEANPFFCPDPHKVEEIAELICALKERGDSIGAKITIMAKNLPVGLGEPVFDRLDADLAHALMSINAVKGLEVGEGFSFVNKLGSESRDEMTSSGFSTNYSGGILGGISSGQPLLVHLALKPTSSIAIPAKTINQQGETVEMTTSGRHDPCVGIRAVPIAESMLAIVLMDHLLRHRAQCGHF
>NZ_CP016303.1|WP_016857500.1|1056635_1057637_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD
MRVLGIETSCDETGVAIYDSESGLLADQLYSQVKLHAQYGGVVPELASRDHIRKIVPLIQATLKEACVSPQEIDAVAYTAGPGLIGALLVGASVGRALAFAWNVPAVPVHHMEAHLLAPMLEDQVPDFPFIALLVSGGHTQLVQVNAIGKYALLGESLDDAVGEAFDKTAKLLGLEYPGGAMLAHLAQQGHPDRFIFPRPMIDRPGLDFSFSGLKTAAALTIRANHQDEQTRCDIAYAFEKAVIDTLAIKSERALEQTGLTRLVLAGGVSANEKLRSKLSVIMHERQGKVFYARPQFCTDNGAMIAYAGWRRIQEGSRSDLSISVHPKWALSQ
>NZ_CP016303.1|WP_016857501.1|1055702_1056413_-|Bax-inhibitor-1/YccA-family-protein
MNRYSKSNGSIIEGRSTGIQAYMSQVYGWMTCGLLLTAFVAWYAANNPAILNLIFSSQIVFFGLIIVQLGLVFVISGMIHKLSGAMATSLFMLYSALTGLTISSIFVVYTQSSIASTFVITAGMFGAMSFYGYVTKRDLTGLGNMLFMGVIGILLASIVNIWLKSSALMWAVTYIGVVLFVGLTAYDTQKLKNMGEQLDSNDKEGFRKYSIVGALTLYIDFINLFLMLIRIIGNRR
>NZ_CP016303.1|WP_046493586.1|1054047_1055400_-|ATP-dependent-RNA-helicase-SrmB
MMSPPFCEFDLDPCLLRALEDKGYLSATAIQTTVIPKAMEGRDLLGSAPTGTGKTIAFLIPALQHLIDFPKKKPGPPRILILAPTRELAIQVADQATELAKYTSLKVAKITGGVAYMNHTEIFSTNQDILVATTGRLLQYIKEENFDCRAVEILILDEADRMLDMGFAQDIEVISAETRWRKQTLLFSATLESATIREFSERVLRDPIYLEAAPSVRERKKILQSYYRADNLPHKIALLCYLLKTPSVQKSIIFVRTREKVHELVHRLQSEGIHSGYLEGEMVQTKRTEAIARLNSGRIQVLVATDVASRGLDIEDISHVFNFDMPYTGDVYLHRIGRTARAGRKGTAISLIEAHDHSLLKKVERYLKKTIKPRIVDELRPTTKAPNEKQAGKPSKKVLAKRKEQKKSKKEKAKVKIRHRDKKNLGKRREPKNFKKNKENGDASSSSHLA
>NZ_CP016303.1|WP_016857479.1|1067307_1067757_-|universal-stress-protein-UspA
MAYQHILIAVDLSEESQILLEKAVSMAKPYHAKISLIHVDVNYTDLYTGLIDPPFGDVQKHIAEETKKKLTQLSQSTDYSITETLIGNGAFAEVLVDAVKKYEVDLVLCGHHQDFWSKLMSSTRQLLSVVHVDMLIVPLRKTDITENQN
>NZ_CP016303.1|WP_016857480.1|1067840_1068656_-|glutamate-racemase
MTSQMNFYDRVSVLILDSGIGGLSVYQEMQKLLPHIHYIYCFDNEGFPYGEKSEIFILEQVIKIMTAIQKKHFLNCVIIACNTASTIVLPILRQRFSFPVIGAVPAIKPAARITRNGVLGLLATPATIKRPYTLDLIKRFAKNCQVELLGSSELVYLAEKKVLGKEISINMFKKILQPWLNLQKVPDTIVLGCTHFPFIINELQQIFLNASMIHSGAAIAKRAFSLIGSQQNTSVHSFKNKAYCVKKNEDTESLSPILEKYGFSVLEELSL
>NZ_CP016303.1|WP_016857482.1|1068997_1069555_-|oligoribonuclease
MVKKSINHHQNLIWIDLEMTGLDPERDSIIEIATLVTDADLNILAEGPVIQIYQSDQQIALMNDWNMCVHTKTGLIERVKNSLFSTADAESATLEFLKKWVPEGQSPICGNSVAQDRRFLYRYMPKLEAYFHYRYLDVSTLKELAARWKPEILPGFKKKNTHQALEDIRESVSELAYYREHFIQR
>NZ_CP016303.1|WP_016857483.1|1069664_1070726_+|small-ribosomal-subunit-biogenesis-GTPase-RsgA
MKKNKLSKNQYRRIQAHHQYRLHPTSLTDDKNNQLDDAQFGEPQQGVVISRFGQHADVEGHQGQQQRCHIRRNVLSLVTGDRVIWRPGIPRQENRNVKGIVEAVHERKSVLTRPDFYDGLKPMAANIDQIVIVSAVIPDLSLNMIDRYLVVSESLKIKPLLLLNKIDLLTPNERKKINLRLNIYRNIHYTVLEVSAQTGEGIADLQANLLDRVSIFSGQSGVGKSSLLNTLLPPTEQQILVEALSEKSALGQHTTTISRLYHFQQGGDLIDSPGIRGFGLWHLTQEQIIQGFIEFRDYVGHCKFRDCEHIDDPCCALRDAVQKGHIAKERFDNYHQILSEITSLKGKKLFNQD
>NZ_CP016303.1|WP_029589048.1|1070741_1071608_+|phosphatidylserine-decarboxylase
MLKKLKIKLQYLLPQHALTRLAGWAANKKAGWLTQQVIKIFASYYRVNMKESQYTEFSAYSSFNEFFIRSLRSDVRPIAAGDNILVQPADGTISESGRIDKDKILQAKGHDYSLEALLAGQSLLAKEFENGQFVTTYLAPGDYHRVHMPCDGVLREMIYVPGSLFSVNAFFAENVPYLFARNERVICIFNTAFGAMAQILVGAMIVGSIETLWSGPVDSQRKGIIQRWVYPDEGSEAPIILKKGEEMGLFKLGSTVINLFVSNKIKLASHLQNGSITRLGEILGEALH
>NZ_CP016303.1|WP_040056120.1|1071898_1075231_+|miniconductance-mechanosensitive-channel-MscM
MILPFIFLLIGLLYSLTALPDSPRLNKIQIESFLKKVKSNQKLPHQKEIIQTLEASIDWLDATEMSAKEAKKYQIVINNFESLTKNLQKQIEKEDEKPLSIEANLTIQELEQEVIKTNSQLIELTRQIQHEQEEFQQIFDLILKIPAEQSKIRRILSQITQQLQLKSNPLTPLEQAQLTLLKAEALAHRAKLNQLELAQLSSNNRQELSRMRIELYQKRHEYKDKLLEILQKNLNDQRYKNAEQALKRTELMAKECPDLPVSISKSLETNRMLTDILNEQTKRMNAISDQKRQIDSEILKVNQTLNAIREQVQWLSVSPELGETLIAQVEKLPEKPKLQKLDQDMADLRLKRLNYEELLEQERKKIISIQEGGPSLASQQRCIFDAQMRHKSELLNLLISGYDSQILELTKIRLASNQLVDALNEVQEAVHRYLFWVPDINRVSFAYPIKTVKDLMQLLSLNTASQISGALMTMLNNQQTLLQTIGALLLVAFSIGSRRHYYAFLERTHNRVGKVNQDQFALTLRTVFWSIFIASPLPILWKIMGYGLQNAWSYPIAVSIGTAVTETVPVLWVFMISATFASPYGLFISHFRWHPDQVKRAMRFYRMLIWLIVPLMMAIITFQNYNDREFLSTLGRLCFILLCIALSLVTTSLKRAGVPLYLDKNGHCDNVLNHTLWRLLFFAPLIAAFASTLGYLATAQALLSRLETSVTIWFFLLIVYHIIRRWMLIQRRRIAFERAKQRRADILAQRARGEEENLYNNSESAIEIEEPVINLDLISAQSLRLVRFILTMIALISVITIWSDIHSAFGFLENIHLWKVASTINGVDNIQNITMGSLLVCIFFIILTAQLVRNLPALLELVLLQHLDLTPGTGYAISTITKYLIMLAGGMIGFSFLGIEWGKLQWMAAALTVGLGFGLQEIFANFISGLIILFEKPIRIGDTVTIRNFTGTVTKINTRATTIFDWDKKEVIVPNKAFVTEQFVNWSLSDTITRVVLNIPAPANVNSQLIKSILLNACKCCPLSLTHPEPEAYLINLEQGIQIFELRVFASDITERMPLRHAIHQLILEGYQQHGIDLPFPPFQAKIDTFKHDEHAVFLNKNHIRKTGSL
>NZ_CP016303.1|WP_029589049.1|1075288_1076266_-|elongation-factor-P--(R)-beta-lysine-ligase
MSEAANWQPSAPISNLLKRADMIKKIRQFFTDRGVLEVDTPCMSQATVTDVHLSTFETRFLAPTMGKSLSLYMTTSPEYHMKRLLAAGSGPIYQMGRCFRNEEMGRYHNPEFTLLEWYRPHYDMYRLMDEVDDLLQQILTCDSAETLSYQQAFLRHLNIDPLSADETQIKEAAVKLNLASITDNEKDRDTFLQLLFMAGVEPHIGRDKPVFIYHFPASQAALASISTEDYRVAERFEVYFKGIELANGFYELTDSAEQQQRFEQDNRQRAALGLPKRSIDERFIAALKHGLPPCSGVALGIDRLVMLSVNAENLSEVMAFPVERA
>NZ_CP016303.1|WP_046493588.1|1076454_1077456_-|PilT/PilU-family-type-4a-pilus-ATPase
MDFEKWIELGVKKKASDLHLCSGHYPRLRIDGELQVLEGYSRVDEKEIKMLSQTLLTEPKYLQLAEKGQLDFAFTQNKQRLRGHFFKQQYGISAAFRFIPESCPDFDVLNIPAIVQQLMRQENGLILMTGATGSGKSTTLNAVISAMNQRYARHIIILEDPVEYLHRDGLGLIQQRDLSLHTCSANAALSAALRQDPDIILLSELRDLESIRLALTAAETGHLVLATLHTRTAAQAIDRLIDVFPAEDKSCVRGQLASSLIAVLAQKLVLKEGGGRIPLFEVLVRTPAVSHLIREGKIHQLEDVMHRGSQWGMQTFTQHKEQLQQEGSLAKNA
>NZ_CP016303.1|WP_016857488.1|1077476_1078196_+|YggS-family-pyridoxal-phosphate-dependent-enzyme
MNAIKQNIQNIKERILSDAQNCGRSPKEIQLLAVSKTRSVKLITEAIQAGQYAFGENYVQEGIEKIHYFSKNRIGNIKPQWHFIGPLQSNKTRSVAEYFDWCHTVDRLKLAERLSAQRPSNLPDLNVLIQVNISQEKTKSGVMLSELFDLASLISPLPKLKLCGLMAIPALIKDYHQQLVVFEEMRSAFLELKKEYPEWDILSLGMTNDMTAAIHAGSTLVRIGEGIFGHFEGKTNETS
>NZ_CP016303.1|WP_016857489.1|1078182_1079010_+|pyrroline-5-carboxylate-reductase
MKHHKIVFIGSGNITSAIVSGIVENGYPSQKITVCAPSEGHRGVLAKKWGVISSADNAAAIRQGDVIIFSVKPQKIRELCQDLCDAKIDFSNKLILSVVTGISISRFCELLNTKLNLIRMMPNTPVRVHEGMTALFAAEEVNEADRHFTTKLMCSVGKVCWLKNEADINKVIAVSASAPAYFFLFMEAIEREALLLGFSQERARLLVQQTARGVCALVEKSSALSLSELRQQVSSKGGTTEAAIKFFNKKQLFTVVSGAMKAAIAQAEFLEKNTF

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Crispr_ID: NZ_CP016303_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016303_4

1656197-1656294

Orphan

Consensus_repeat	Method
GGCCACTTTACCCCCTTTTATTGGGTTTG	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_CP016303_4

>merge|NZ_CP016303|4|1656197-1656294|CRISPRCasFinder
GGCCACTTTACCCCCTTTTATTGGGTTTGCTGGTGACTGTTTTTCTACGACATGCTCAGGTGAAATAGGGGCCACTTTACCCCCTTTTATTGGGTTTG

>NZ_CP016303|4|3|1656197-1656294|CRISPRCasFinder
GGCCACTTTACCCCCTTTTATTGGGTTTG	CTGGTGACTGTTTTTCTACGACATGCTCAGGTGAAATAGG
GGCCACTTTACCCCCTTTTATTGGGTTTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016303.1\|WP_046493914.1\|1649403_1651014_-\|YopB/SseC-family-type-III-secretion-system-translocon-subunit	unknown	unknown	gnl\|CDD\|185272
NZ_CP016303.1\|WP_046493912.1\|1651638_1652688_-\|EscU/YscU/HrcU-family-type-III-secretion-system-export-apparatus-switch-protein	unknown	unknown	gnl\|CDD\|236168
NZ_CP016303.1\|WP_029589138.1\|1666791_1667457_+\|ribonuclease-T	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|179951
NZ_CP016303.1\|WP_046493917.1\|1644956_1646309_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016303.1\|WP_046493909.1\|1658932_1660987_-\|EscV/YscV/HrcV-family-type-III-secretion-system-export-apparatus-protein	unknown	unknown	gnl\|CDD\|237946
NZ_CP016303.1\|WP_046493908.1\|1661004_1662213_-\|YopN/LcrE/InvE/MxiC-type-III-secretion-system-gatekeeper	unknown	unknown	gnl\|CDD\|237947
NZ_CP016303.1\|WP_095591396.1\|1665747_1666584_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|237080
NZ_CP016303.1\|WP_016858071.1\|1648080_1649037_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016303.1\|WP_046493913.1\|1651015_1651534_-\|type-III-secretion-system-translocator-chaperone-SicA	unknown	unknown	gnl\|CDD\|185231
NZ_CP016303.1\|WP_016857736.1\|1657189_1658485_-\|FliI/YscN-family-ATPase	unknown	unknown	gnl\|CDD\|236166
NZ_CP016303.1\|WP_016857737.1\|1656750_1657206_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|280292
NZ_CP016303.1\|WP_016858095.1\|1667462_1667816_-\|Grx4-family-monothiol-glutaredoxin	unknown	unknown	gnl\|CDD\|182759
NZ_CP016303.1\|WP_046493916.1\|1646260_1647994_-\|IpaD/SipD/SspD-family-type-III-secretion-system-needle-tip-protein	unknown	unknown	gnl\|CDD\|368947
NZ_CP016303.1\|WP_015873899.1\|1653629_1653890_-\|EscS/YscS/HrcS-family-type-III-secretion-system-export-apparatus-protein	unknown	unknown	gnl\|CDD\|185233
NZ_CP016303.1\|WP_016857976.1\|1663889_1664660_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|185240
NZ_CP016303.1\|WP_016857741.1\|1652862_1653627_-\|SpaR/YscT/HrcT-type-III-secretion-system-export-apparatus-protein	unknown	unknown	gnl\|CDD\|185232
NZ_CP016303.1\|WP_016857739.1\|1654583_1655612_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|181259
NZ_CP016303.1\|WP_016857735.1\|1658484_1658910_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|341118
NZ_CP016303.1\|WP_016857740.1\|1653906_1654572_-\|EscR/YscR/HrcR-family-type-III-secretion-system-export-apparatus-protein	unknown	unknown	gnl\|CDD\|237209
NZ_CP016303.1\|WP_052735030.1\|1664870_1665194_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP016303.1\|WP_046493914.1\|1649403_1651014_-\|YopB/SseC-family-type-III-secretion-system-translocon-subunit	gnl\|CDD\|185272	PRK15374, PRK15374, type III secretion system needle tip complex protein SipB.	2.61112e-25
NZ_CP016303.1\|WP_046493912.1\|1651638_1652688_-\|EscU/YscU/HrcU-family-type-III-secretion-system-export-apparatus-switch-protein	gnl\|CDD\|236168	PRK08156, PRK08156, EscU/YscU/HrcU family type III secretion system export apparatus switch protein.	0
NZ_CP016303.1\|WP_046493909.1\|1658932_1660987_-\|EscV/YscV/HrcV-family-type-III-secretion-system-export-apparatus-protein	gnl\|CDD\|237946	PRK15337, PRK15337, EscV/YscV/HrcV family type III secretion system export apparatus protein.	0
NZ_CP016303.1\|WP_046493908.1\|1661004_1662213_-\|YopN/LcrE/InvE/MxiC-type-III-secretion-system-gatekeeper	gnl\|CDD\|237947	PRK15338, PRK15338, YopN/LcrE/InvE/MxiC type III secretion system gatekeeper.	0
NZ_CP016303.1\|WP_095591396.1\|1665747_1666584_+\|transcriptional-regulator	gnl\|CDD\|237080	PRK12370, PRK12370, HilA/EilA family virulence transcriptional regulator.	1.203e-82
NZ_CP016303.1\|WP_046493913.1\|1651015_1651534_-\|type-III-secretion-system-translocator-chaperone-SicA	gnl\|CDD\|185231	PRK15331, PRK15331, type III secretion system translocator chaperone SicA.	2.28869e-63
NZ_CP016303.1\|WP_016857736.1\|1657189_1658485_-\|FliI/YscN-family-ATPase	gnl\|CDD\|236166	PRK08149, PRK08149, FliI/YscN family ATPase.	0
NZ_CP016303.1\|WP_016857737.1\|1656750_1657206_-\|hypothetical-protein	gnl\|CDD\|280292	pfam02090, SPAM, Salmonella surface presentation of antigen gene type M protein.	8.19507e-40
NZ_CP016303.1\|WP_016858095.1\|1667462_1667816_-\|Grx4-family-monothiol-glutaredoxin	gnl\|CDD\|182759	PRK10824, PRK10824, Grx4 family monothiol glutaredoxin.	2.51497e-65
NZ_CP016303.1\|WP_046493916.1\|1646260_1647994_-\|IpaD/SipD/SspD-family-type-III-secretion-system-needle-tip-protein	gnl\|CDD\|368947	pfam06511, IpaD, Invasion plasmid antigen IpaD. This family consists of several invasion plasmid antigen IpaD proteins. Entry of Shigella flexneri into epithelial cells and lysis of the phagosome involve the IpaB, IpaC, and IpaD proteins, which are secreted by type III secretion machinery.	0.000595483
NZ_CP016303.1\|WP_015873899.1\|1653629_1653890_-\|EscS/YscS/HrcS-family-type-III-secretion-system-export-apparatus-protein	gnl\|CDD\|185233	PRK15333, PRK15333, EscS/YscS/HrcS family type III secretion system export apparatus protein.	2.27974e-33
NZ_CP016303.1\|WP_016857976.1\|1663889_1664660_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|185240	PRK15340, PRK15340, AraC family transcriptional regulator InvF.	4.07457e-46
NZ_CP016303.1\|WP_016857741.1\|1652862_1653627_-\|SpaR/YscT/HrcT-type-III-secretion-system-export-apparatus-protein	gnl\|CDD\|185232	PRK15332, PRK15332, SpaR/YscT/HrcT type III secretion system export apparatus protein.	1.396e-137
NZ_CP016303.1\|WP_016857739.1\|1654583_1655612_-\|hypothetical-protein	gnl\|CDD\|181259	PRK08158, PRK08158, YscQ/HrcQ family type III secretion apparatus protein.	8.93548e-39
NZ_CP016303.1\|WP_016857735.1\|1658484_1658910_-\|hypothetical-protein	gnl\|CDD\|341118	cd17035, T3SC_IB_Spa15-like, Class IB type III secretion system chaperone protein, similar to Shigella flexneri Spa15. This family includes type III secretion system (T3SS) chaperone proteins similar to Shigella flexneri Spa15, Salmonella enterica InvB, and similar proteins. In S. flexineri, which is a facultative intracellular pathogen that invades the colonic epithelium and causes bacillary dysentery, the T3SS allows injection of a number of effectors to ensure their stabilization prior to secretion. Spa15 is the chaperone for several TTS effectors, including IpaA, IpgB1, OspC3, OspB and OspD1. Effector IpgB that chaperone Spa15 is a mimic of the human Ras-like Rho guanosine triphosphatase RhoG, thus activating Rac1 guanosine triphosphatase and setting off membrane ruffling of the cell, assisting the internalization of Shigella. Also, Spa15 is a chaperone for secreted anti-activator OspD1 which is involved in the control of transcription by the type III secretion apparatus (T3SA) activity in Shigella flexneri.	3.22814e-41
NZ_CP016303.1\|WP_016857740.1\|1653906_1654572_-\|EscR/YscR/HrcR-family-type-III-secretion-system-export-apparatus-protein	gnl\|CDD\|237209	PRK12796, spaP, EscR/YscR/HrcR family type III secretion system export apparatus protein.	2.84861e-138
NZ_CP016303.1\|WP_029589138.1\|1666791_1667457_+\|ribonuclease-T	gnl\|CDD\|179951	PRK05168, PRK05168, ribonuclease T; Provisional.	1.33696e-152

>NZ_CP016303.1|WP_016857739.1|1654583_1655612_-|hypothetical-protein
MNCLKLPLLSEIKERRLETFWRAEGVPVSISSPDAFSELLFFTADESWQGVMNLGEWFSHVAPEMSGLSNQMYNNLQLKQLFSATERPVDLPPKSLSYKKLRLQALPDHSVFEKPLLCLETSQGALWITKLPEMEIPRPSLPKKLNLSILPIPLTFEIGVSQLSLGLLKKISVGDILLISQLTHRVSTAGIGIGRYKKNEGQIMIEKKDEEYQEYDKNLEEDEYEDEYEDEDEEHQKDQENDDGDDAGNENKVHEHHPKDQKKSSSLCAQVPVTLTFILQKNKVTVEKLEKMYEGEVIPLEPSIEERIEIRANNVRIARGKLLGMENGALGIELTQLYQSKT
>NZ_CP016303.1|WP_016857740.1|1653906_1654572_-|EscR/YscR/HrcR-family-type-III-secretion-system-export-apparatus-protein
MENDISLISILAFSTLLPFVIASGTCYIKFSIVFVMVRNALGLQQIPSNMTLNGVALLLASFVMMPIVKNIYEGYKNAQFDVRNLSSVIEFVENGLDGYRSYLVKYADPELTQFFEKAASDRKEEDFAGAEEEKPSIFALLPAYALSEIKSAFKIGFYIYLPFVVVDLLISSILLALGMMMMSPVTISVPIKLVLFVVLDGWTLISKGMILQYMDLAGASS
>NZ_CP016303.1|WP_015873899.1|1653629_1653890_-|EscS/YscS/HrcS-family-type-III-secretion-system-export-apparatus-protein
MNDLVFAGNKALYLILTLSAIPVAVATAVGLIIGLIQTVTQLQEQTLPFGIKLLSVSLCLFLLAGWYGDTLLAYAREVIGIALRRP
>NZ_CP016303.1|WP_016857741.1|1652862_1653627_-|SpaR/YscT/HrcT-type-III-secretion-system-export-apparatus-protein
MMIDFTNNFLNELIVVLFASARLMPAFFLLPFFSNNVLTGSLRLPITMLVAFSLWPYQEKVLPPFETFLYLGLVSKELLIGVLLAFLISWPFWILHAVGAIIDNQRGATISSSIDPISGVDTSELSNFFNLFAAAVFLQGGGMTLFLESYHQSYQICSPLRDCTFAFSPIFAMLTKLMSKSLILASPVIAVLLMTEAILGLLSRFAPQLNAFSIALTVKSLIAFLVIILYFSAFIPDQINSLSFYSDLLPIWFK
>NZ_CP016303.1|WP_046493912.1|1651638_1652688_-|EscU/YscU/HrcU-family-type-III-secretion-system-export-apparatus-switch-protein
MSSNKTEKPTQKKLKDSAKKGQSFKTKDFIIACLMLAGVQYLISFASFSELMFLYKEIISFNFEYDIHRYTISALSIGFKIFLPILLICIFFSALPSLLQTGFLLATKAIKLNLGALNPTKGFKKIFSLRTAKDAVKSVLYLGTFFVAVLVVCNTKKGVLFQQLHGSSPYEMAMVWGQLLQSILWTCLGCIVIILILDALAEYFLHIKDLKMDKQEVKREMKEQDGNPEIKGRRRELHMEILSEQIKSDIKNSQCIIANPTHIAVGIYVNPDTVMMPFISVLETNQKALAVRAYAKKVGVPVIQNISLARAIYKNNNRYSFVRMDELDELLKLLFWLYDVESEGYYKLL
>NZ_CP016303.1|WP_046493913.1|1651015_1651534_-|type-III-secretion-system-translocator-chaperone-SicA
MSVIRDINQKKTLEIDDETAEMLSEAIINSASLKDIHNIPEEMMEGLYAYAYDFYQKGKLDEAETFFRFLCMYDLYNSDYFVGLAAVYQLKKQFQKAIDLYAIAFALNKNSDYKIVFLSGQCQLSMGKPRQAKLCFELVYEKIEDEFIRKKAKAYLDTMQKIKSKKIAAQEA
>NZ_CP016303.1|WP_046493914.1|1649403_1651014_-|YopB/SseC-family-type-III-secretion-system-translocon-subunit
MLNNVAGSYNPFIPSPDYADLNQFEEEFDAQEDSQESESTVDDIKGFIGRRGSQKAAKKRAEHPMKEAAQHKANGLGLFDTKTFLAQANQALVDLQLVESAEKTDLEKNPVVTDIPIMRAPVNGAESSYGGLYELLGEVANILGEADIVKLKDNLKLLKENSKAVENNSKEIESLVTNREELEEELKKLSKITDKEEKEKKLKQIGLKIKDLNEKTNTLLKNYDLTHDQMKRMQDNVLSLTQLMAEVINLMSESSSIDIQNTKKVMEAQFKNNIKEMNEQIKKNKEAMEKANEMKKTMGCIAKVIGHVVTAITVLSSIAAVFTGGASLVIAGLAIGLLIADKSMELAGKKSLTAMAMEPVMKAIADGIASRLEKDGLDKDTANLIAAILTAIILAVALVLVSAGLALKSVSQLISKIVPKFISKFIGKMSSKTTQLMMKYSNYVMQALRAILHPTGHAINGTGEIISNEYKGKSVDAQAEIKKLQFERKRINELRQSIESPMESISDAVVNLKEDLSQAILRALSSMQVFVRAIKG
>NZ_CP016303.1|WP_016858071.1|1648080_1649037_-|hypothetical-protein
MEEVESIISEHESILESESDSDSDSDISDEISEEMYNKINYIVESALKDPSILAAASEHKKLSQKYEKIIGALKLEISRPDIFSPENRGSLANLIAMIGELKVLLRDMQNNEIAIMKQMGELSKKALDSEIAGMKDQMTAEKKAAIYGLISTMTVSAVSTVVSLRSLAKTHHAKTKYKEIESTHRPLAKANKQHANNSRNPKVKESHEKEKNEHLKAIDKAYKKKNAEIEKAKLYESISNTGFQMAGQVGEVIRTITKQSLGEEAMVKQKLSEYEKNLAERGLQDAHDGLTNINKGISGTTDIASNAIGSQIQASKAV
>NZ_CP016303.1|WP_046493916.1|1646260_1647994_-|IpaD/SipD/SspD-family-type-III-secretion-system-needle-tip-protein
MATATSGIWISSSGYIKTEPNEKIEENQFYKEEKSLSGSPSLESKNHHNNDNTVETYKESLNDFLSAFKCYQDGQTTALNQHIGATHLRSMIALSKVSSAEQQALFQEIFKKTLISEGGSVEMLKRFILDSTGLEADEKEFCKQQISRLFPETSSPVLDPVNKELKNDSGSTNEPDVPPAPPSLPGEKSIDVPLAPPSLRREKSIDVPPAPPSLPAPPSSDGGGLLERVYTKVTGVMKSVKDSYVDVHGRASNAQKDYSKEFSEINRMEQWIDNTDKSGEKVKFKAGGYLNALEELKKRYGVEKGAKIVFKDPNKSRDNGYVNVNQANNDNASIEVSQYNSDGSYTKKKVLYPTVASEVNARLTKKEQMTNLCNDLGLSPEKSLVEVEIWDESQGRYQKGYIIVANPSDIDTLIKSVKETFPEITEDPLQKDIDYYRKYYAHRTDHYIRVSNQYQSASGWRPLLKNYLWNEMNNSKALLDQAEKDLQDAISKKEKQTEEDKERAKIEKINKFHEIDIQKFGPLKTTGTTMTDNALGDTRQSAQKLSQAHSIAENLYKVLANACQMIAEALIGIVRNW
>NZ_CP016303.1|WP_046493917.1|1644956_1646309_-|hypothetical-protein
MSDDSRGFDRNCKKLVNKMPFIKTHKTNQMVTQNTLGQNNKEHKPGALKENLRKVSSTAEHPFPSSTIETDNQMTPAIKEIRGAIEKNIKENEKKRVARYQLPECRYQLPQCESNEKKVEYFNNIVNYAAMILESVEGKSDSQKLGKWTKDLQSDFLKLKTAFEKSGDQQNSFDILRKNKKLTQSLQGTIREIVYDLANHNKQEDKSILNIFMEKNTYLNSDEIKKHVVLDKHEFRQLKNHVVSFSSLDTADLINCQDIYKALSQDLAYCYKLKDGKNTTPDSKGIPHDGNTNPTELVRPPVEERGHQSTHVHYHYHDNNYYYNYYNDKQHQIAELNQTPKISQQTQTNDDNNDDDSTVQSSGVGMHVSRPQISDLMVVQTLTDENKMESGTPINANKHTKTNTFAETRTVTTQGGAKRLLAPTTHTQLPDTWTSHENTWDFSRNWKKKN
>NZ_CP016303.1|WP_016857737.1|1656750_1657206_-|hypothetical-protein
MSLLNNIVVLLNRCEMHQRRCDIAVFQIKQKEQKLDKKLEEIELKRKHLKTLLYLQKPEGKMNKTGLYAIQRRLAIVRRQLTELDLKEVTIQEKKMEYQKEKEKVMQERQYWLRKSDKYQHWQKVQKKLRLMAQLKQEETEMEEIITCKKK
>NZ_CP016303.1|WP_016857736.1|1657189_1658485_-|FliI/YscN-family-ATPase
MHKLRLLRYKAHPLRLSGPIIEARLFGVKIGEICDIRSDCSESEVICRAQVLGFYNDRSVLSLIGNARGLSRDVVIIPTGAALLVTIDDSLLGSVVDPSGKIVAHLSEPAEIIHNPSIRAIDSPPPSYLHRLSIRDPFITGVKAIDGLITCGVGQRMGIFAAAGCGKTSLMHMLIEQADADVFVIGLVGERGREVTEFTEVLSKSGRAQKCIVVYATSDFSSLDRCNAALLATTIAEYFRDQGKKVVLFLDSITRYARALRDVALAAGEAPARRGYPASVFDSLPSILERPSNTKNGSITAFYTILLESDDEPDPIAEEIRSILDGHIYLSKKLAIKNHYPAIDVLHSISRVSSQICDTNHLSMAGEFRNILAKIQELQMFVELGEYRQGENAENDRAIKKRPALLKWLQQSMNEHSSFEQTLQAMNELTQ
>NZ_CP016303.1|WP_016857735.1|1658484_1658910_-|hypothetical-protein
MNNNIDLADLVRKALISCGCNENLLQNFDAHSTIQLEFDEKPSIFISRDDEDEIWVWSSLMPLLTEPERETLLERSASLIEEKLEAECDFSATKKLELDNNEDAIHLKVKVDPDYLHDPEKFSTVLTGFFEEIETYSEMLR
>NZ_CP016303.1|WP_046493909.1|1658932_1660987_-|EscV/YscV/HrcV-family-type-III-secretion-system-export-apparatus-protein
MNKFLENVRNRPELLILSLVIMIIAMLIIPLPTYLVDFLIGLNIVISLLVFMGSFYIDRILSFSTFPSVLLITTLFRLALSISTSRLILNDADAGEIVRTFGLFVIGDNLVVGFVIFGIVTIVQFIVITKGAERVAEVAARFSLDAMPGKQMSIDADLKAGVIDSDAAKERRSVLEKESQLYGSFDGAMKFIKGDAIAGIIVIFINFIGGISVGVSQHGMSMSSALSTYTMLTIGDGLVAQIPSLLIAISAGFIVTRVNGDGDNMGRTMMSQLVSNPFALMVTAGLALTIGFLPGFPLFVFVILAGVLSGFFIYKHFFEKNKGTEALEKADSKEEDSVFNETHSIDSSLGLIGNLDKVSSETVPFIMLVSSSDLEKLENQKLVEHLRSQFFIDYGIRLPNILLRASTTVSKNRAVFLINEIRAEEFVLQLNLLRIVNSSDELMQLEIETVLDNGTVWVKPEHKQTLENMGYQLRSPIDELYHSMAALLSRHVSEYFGIQETKDMLDKLENKYPDLMKEIMRHATIQRITEVLQRLLSERISVRNMRLIMESLALWMPREKDVISLVEHVRGGLSRYICHKFSVNNELRSIVLSSEVEDMIRQGIRNTSGGTFLNLEPAVSDQLMDLFSVNLENLLIDHKDLVLLSSVDTRRFVKKFIESRFRDLEVMSFGEISETVSVNVLKTI
>NZ_CP016303.1|WP_046493908.1|1661004_1662213_-|YopN/LcrE/InvE/MxiC-type-III-secretion-system-gatekeeper
MNITQSVLPARNLYTKGIARERRTKDSMEENKNKYNAQMDSLHKTGEIIEDLSVGAQVQKFAYFSDEMSVLLAQLRNRRDLEKKSGLMSESFERVLEEDVVPKVNQLIKSVESSQGAGIQNLLTHARKFFPDDSDLVLVLREILKRRKLNTKLRKRLMSLLAHLEETADPRRLKAGINVALKARLFGKYLSLDPALVRESYRNFLENEKTELENYQDWISIYGYQKRGAVVDFMEGALLADIDSQDPSCSMLEFGHLLGKLGQLKLLRSSDIIFIKSILKSPLVKSFNESEKSWLLFMLCVLQLPEYLDDFLSEVLGERILMREHAKRSQLLQVIYRACKKLPIELFVGLEERESMLERFEQIAAVAYRREMIEARRNEKIKKKKYKKNKKSFDFYSDDNTN
>NZ_CP016303.1|WP_016857976.1|1663889_1664660_-|helix-turn-helix-domain-containing-protein
MKIKNIQNVLNERHKKQITKMVIWFVQIGKIECKIQIQTASGNNSEMVFKSGWRGFVAINPSSLQIQSGSLRYKRINVMMMAKLQAFIDKSLVKKSVQHISKSNEAFAVVEVPDSSILHSLREIEYWLLGETLNPKSGTDQFLNLLRNTEWYWVVYFLLNEFNGNNRLKNLCQRYGLSLAHFRRICRIALGNTTKVALRDWRMVKAILDLVLKNQNLTEVAFEHGYASLSHFSSEVKEALGVSPKKLLQTITHTTN
>NZ_CP016303.1|WP_052735030.1|1664870_1665194_-|hypothetical-protein
MLFSLAGTYSYFDFYRMSQGVNAHFHNRLLKNAMQLLDQEQKNIFEAHLNRILKNELSLTKICSQVKKIGMPMYIQNYMNANQVFDIDIDATKNWENALQGYLHCRM
>NZ_CP016303.1|WP_095591396.1|1665747_1666584_+|transcriptional-regulator
MNNILSHSEKYIFGEFTLTADALLSYKNKIVKVPPKEFSILMLLLDSAGVLISKDDFLEKVWPNEFVSEESLTRCIYVLRRLLHENKNNRYIDTVYGKGYRFIQPVTQSERFAESQCSLAVLPFKLPQQFDSLMIHDFLIQSLSKYTYSGLNVLPSTLINSCKDYDGIMCFLEKMKPNYYLSAHTINDGDISSLRIELIRTHDHSIVHREKFDICDNVHLTCLNLQGVIHKLLVRHIPSLNKKSSSVPVMKEFDTTFAYLNAHQKFYSHKLYNIKKSL
>NZ_CP016303.1|WP_029589138.1|1666791_1667457_+|ribonuclease-T
MSEDNTLNINKNDINTLNHRFRGYYPVVIDVETAGFNTKTDALLEIAAVTLFMDKEGWLHIEQSMHFHVEPFSGANFEPEALAFNGIDPHSPLRDAKSEFEVLKKIFKWVQKGMKEQYCKRAIIVAHNAGFDHAFVMNAAKRAGLKQNPFHPFSTFDTAALSGLALGQTVLAKACLTAGLNFDMSRAHSALYDTQQTARLFCELVNRWKRLGGWPPSPLHS
>NZ_CP016303.1|WP_016858095.1|1667462_1667816_-|Grx4-family-monothiol-glutaredoxin
MTTVEKIQFQIKNNLILLYMKGSPKIPSCGFSAQAVNILSACGERFAYVDILQHPDIRVELPKYANWPTFPQLWVNGELVGGCDILTEMHQKGELKELLQFQYQEKLSPITGDKKSK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP016303_2	2.1\|526635\|18\|NZ_CP016303\|CRT	526635-526652	18	NZ_CP016303.1	526611-526628	2	0.889
NZ_CP016303_2	2.2\|526671\|18\|NZ_CP016303\|CRT	526671-526688	18	NZ_CP016303.1	526611-526628	2	0.889
NZ_CP016303_3	3.1\|1065557\|29\|NZ_CP016303\|CRISPRCasFinder	1065557-1065585	29	NZ_CP016303.1	388724-388752	2	0.931
NZ_CP016303_3	3.1\|1065557\|29\|NZ_CP016303\|CRISPRCasFinder	1065557-1065585	29	NZ_CP016303.1	394412-394440	2	0.931

1. spacer 2.1|526635|18|NZ_CP016303|CRT matches to position: 526611-526628, mismatch: 2, identity: 0.889

cgaggaagaacccgaaga	CRISPR spacer
cgaggaagaactcgagga	Protospacer
***********.***.**

2. spacer 2.2|526671|18|NZ_CP016303|CRT matches to position: 526611-526628, mismatch: 2, identity: 0.889

cgaagaagaacccgagga	CRISPR spacer
cgaggaagaactcgagga	Protospacer
***.*******.******

3. spacer 3.1|1065557|29|NZ_CP016303|CRISPRCasFinder matches to position: 388724-388752, mismatch: 2, identity: 0.931

gtggcaccgcaagcagcggagcttcaagc	CRISPR spacer
gtggcaccgcaagtagtggagcttcaagc	Protospacer
*************.**.************

4. spacer 3.1|1065557|29|NZ_CP016303|CRISPRCasFinder matches to position: 394412-394440, mismatch: 2, identity: 0.931

gtggcaccgcaagcagcggagcttcaagc	CRISPR spacer
gtggcaccgcaagtagcggcgcttcaagc	Protospacer
*************.***** *********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP016303_2	2.3\|526707\|30\|NZ_CP016303\|CRT	526707-526736	30	HE983844	Pseudomonas phage vB_PaeP_C1-14_Or complete genome	5687-5716	3	0.9
NZ_CP016303_2	2.3\|526707\|30\|NZ_CP016303\|CRT	526707-526736	30	HE983844	Pseudomonas phage vB_PaeP_C1-14_Or complete genome	5699-5728	5	0.833
NZ_CP016303_2	2.3\|526707\|30\|NZ_CP016303\|CRT	526707-526736	30	NZ_CP015179	Bacillus thuringiensis serovar alesti strain BGSC 4C1 plasmid pBMB57, complete sequence	17441-17470	5	0.833
NZ_CP016303_2	2.3\|526707\|30\|NZ_CP016303\|CRT	526707-526736	30	MT108723	Pseudomonas phage Epa1, complete genome	6868-6897	5	0.833
NZ_CP016303_2	2.3\|526707\|30\|NZ_CP016303\|CRT	526707-526736	30	NC_019813	Pseudomonas phage vB_PaeP_p2-10_Or1, complete genome	5687-5716	5	0.833
NZ_CP016303_2	2.3\|526707\|30\|NZ_CP016303\|CRT	526707-526736	30	NC_048847	Alteromonas phage vB_AmeM_PT11-V22, complete genome	45505-45534	5	0.833
NZ_CP016303_2	2.3\|526707\|30\|NZ_CP016303\|CRT	526707-526736	30	KY629621	Streptococcus virus MS1, complete genome	13036-13065	6	0.8
NZ_CP016303_2	2.3\|526707\|30\|NZ_CP016303\|CRT	526707-526736	30	MN693865	Marine virus AFVG_250M332, complete genome	9266-9295	7	0.767
NZ_CP016303_2	2.3\|526707\|30\|NZ_CP016303\|CRT	526707-526736	30	MN062703	Microbacterium phage McGalleon, complete genome	23638-23667	7	0.767
NZ_CP016303_2	2.3\|526707\|30\|NZ_CP016303\|CRT	526707-526736	30	GU071095	Synechococcus phage S-SM2, complete genome	7646-7675	7	0.767
NZ_CP016303_2	2.3\|526707\|30\|NZ_CP016303\|CRT	526707-526736	30	MH673673	Thermus phage phiLo, complete genome	61641-61670	8	0.733
NZ_CP016303_2	2.3\|526707\|30\|NZ_CP016303\|CRT	526707-526736	30	MG592459	Vibrio phage 1.084.O._10N.261.49.F5, partial genome	64512-64541	8	0.733
NZ_CP016303_2	2.3\|526707\|30\|NZ_CP016303\|CRT	526707-526736	30	NC_042136	Vibrio phage VP4B, partial genome	176016-176045	8	0.733
NZ_CP016303_2	2.3\|526707\|30\|NZ_CP016303\|CRT	526707-526736	30	KX397366	Erwinia phage vB_EamM_ChrisDB, complete genome	170662-170691	9	0.7

1. spacer 2.3|526707|30|NZ_CP016303|CRT matches to HE983844 (Pseudomonas phage vB_PaeP_C1-14_Or complete genome) position: , mismatch: 3, identity: 0.9

cgaggaagaacctgaggaagaacctgagga	CRISPR spacer
tgaggaagagcctgaggaagagcctgagga	Protospacer
.********.***********.********

2. spacer 2.3|526707|30|NZ_CP016303|CRT matches to HE983844 (Pseudomonas phage vB_PaeP_C1-14_Or complete genome) position: , mismatch: 5, identity: 0.833

cgaggaagaacctgaggaagaacctgagga	CRISPR spacer
tgaggaagagcctgaggaagatcctgaagg	Protospacer
.********.*********** *****.*.

3. spacer 2.3|526707|30|NZ_CP016303|CRT matches to NZ_CP015179 (Bacillus thuringiensis serovar alesti strain BGSC 4C1 plasmid pBMB57, complete sequence) position: , mismatch: 5, identity: 0.833

cgaggaagaacctgaggaagaacctgagga	CRISPR spacer
tgaggaaaaacctgaggaaaaacctgagac	Protospacer
.******.***********.********.

4. spacer 2.3|526707|30|NZ_CP016303|CRT matches to MT108723 (Pseudomonas phage Epa1, complete genome) position: , mismatch: 5, identity: 0.833

cgaggaagaacctgaggaagaacctgagga	CRISPR spacer
tgaggaagatcctgaggaagatcctgaagg	Protospacer
.******** *********** *****.*.

5. spacer 2.3|526707|30|NZ_CP016303|CRT matches to NC_019813 (Pseudomonas phage vB_PaeP_p2-10_Or1, complete genome) position: , mismatch: 5, identity: 0.833

cgaggaagaacctgaggaagaacctgagga	CRISPR spacer
tgaggaagagcctgaggaagatcctgaagg	Protospacer
.********.*********** *****.*.

6. spacer 2.3|526707|30|NZ_CP016303|CRT matches to NC_048847 (Alteromonas phage vB_AmeM_PT11-V22, complete genome) position: , mismatch: 5, identity: 0.833

cgaggaagaacctgaggaagaacctgagga	CRISPR spacer
agaacaagaacctgacgaagaaccagagga	Protospacer
 **. ********** ******** *****

7. spacer 2.3|526707|30|NZ_CP016303|CRT matches to KY629621 (Streptococcus virus MS1, complete genome) position: , mismatch: 6, identity: 0.8

cgaggaagaacctgaggaagaacctgagga	CRISPR spacer
gaaggaagaacctaaggaagagcctgaagt	Protospacer
 .***********.*******.*****.*

8. spacer 2.3|526707|30|NZ_CP016303|CRT matches to MN693865 (Marine virus AFVG_250M332, complete genome) position: , mismatch: 7, identity: 0.767

cgaggaagaacctgaggaagaacctgagga	CRISPR spacer
aaaggaagaaccaaaggaagaacctaaagc	Protospacer
 .********** .***********.*.*

9. spacer 2.3|526707|30|NZ_CP016303|CRT matches to MN062703 (Microbacterium phage McGalleon, complete genome) position: , mismatch: 7, identity: 0.767

cgaggaagaacctgaggaagaacctgagga	CRISPR spacer
cgaggaagagccagaggaagaactgtccga	Protospacer
*********.** **********.    **

10. spacer 2.3|526707|30|NZ_CP016303|CRT matches to GU071095 (Synechococcus phage S-SM2, complete genome) position: , mismatch: 7, identity: 0.767

cgaggaagaacctgaggaagaacctgagga	CRISPR spacer
agaggcagaacctgaggtagaacccgcaaa	Protospacer
 **** *********** ******.* ..*

11. spacer 2.3|526707|30|NZ_CP016303|CRT matches to MH673673 (Thermus phage phiLo, complete genome) position: , mismatch: 8, identity: 0.733

cgaggaagaacctgaggaagaacctgagga	CRISPR spacer
agaggaacaacctgaggaagaacttccctt	Protospacer
 ****** ***************.*

12. spacer 2.3|526707|30|NZ_CP016303|CRT matches to MG592459 (Vibrio phage 1.084.O._10N.261.49.F5, partial genome) position: , mismatch: 8, identity: 0.733

cgaggaagaacctgaggaagaacctgagga	CRISPR spacer
tctagaagaagctgaggaagatcctgatgg	Protospacer
.  .****** ********** ***** *.

13. spacer 2.3|526707|30|NZ_CP016303|CRT matches to NC_042136 (Vibrio phage VP4B, partial genome) position: , mismatch: 8, identity: 0.733

cgaggaagaacctgaggaagaacctgagga	CRISPR spacer
atctgaagaatctgaggaagaacctagcga	Protospacer
    ******.**************.. **

14. spacer 2.3|526707|30|NZ_CP016303|CRT matches to KX397366 (Erwinia phage vB_EamM_ChrisDB, complete genome) position: , mismatch: 9, identity: 0.7

cgaggaagaacctgaggaagaacctgagga	CRISPR spacer
tctacaagaagctgcggaagaacctgagtt	Protospacer
.  . ***** *** *************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

249026 : 257422

Bacteriophage(42.86%)

lysis,portal,holin

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_095591325.1\|249026_250265_-\|portal	phage portal protein	A0A1P8DTI5	Proteus_phage	4.0e-158	67.3
WP_029589155.1\|252610_252970_-	HNH endonuclease	Q9B020	Phage_GMSE-1	1.6e-43	77.9
WP_052735025.1\|253031_253511_-\|lysis	lysis protein	Q2A0C4	Sodalis_phage	2.7e-22	43.7
WP_052735024.1\|253596_253869_-	glycoside hydrolase family protein	B6SCY8	Bacteriophage	5.4e-15	66.7
WP_046493798.1\|253971_254469_-	lysozyme	B6SD42	Bacteriophage	7.2e-58	69.6
WP_015873507.1\|254465_254654_-\|holin	holin	B6SD41	Bacteriophage	2.8e-15	69.6
WP_046493773.1\|255830_256013_+	hypothetical protein	NA	NA	NA	NA
WP_157727281.1\|256129_256444_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_095591326.1\|256707_257016_-	hypothetical protein	NA	NA	NA	NA
WP_046493753.1\|257041_257422_-	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	4.4e-15	42.9

DBSCAN-SWA_2

280151 : 400012

119

Escherichia_phage(17.02%)

head,tRNA,tail,plate,lysis,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016857056.1\|280151_280745_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_016857057.1\|281017_281635_+	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA
WP_046493270.1\|281783_282341_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	3.0e-28	40.3
WP_016857059.1\|282384_284304_+	DNA polymerase III subunit gamma/tau	E7DN81	Pneumococcus_phage	1.5e-39	34.2
WP_016857060.1\|284345_284672_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
WP_016857061.1\|284675_285284_+	recombination protein RecR	NA	NA	NA	NA
WP_095591330.1\|286459_288388_+	molecular chaperone HtpG	A0A1B1ISV4	uncultured_Mediterranean_phage	3.1e-109	35.5
WP_016856726.1\|288558_289209_+	adenylate kinase	NA	NA	NA	NA
WP_157727283.1\|289217_289355_+	hypothetical protein	NA	NA	NA	NA
WP_130651579.1\|289359_289629_-	hypothetical protein	NA	NA	NA	NA
WP_016856724.1\|289883_292604_-	preprotein translocase subunit SecA	NA	NA	NA	NA
WP_016856723.1\|292708_293257_+	DUF721 domain-containing protein	NA	NA	NA	NA
WP_046493272.1\|293307_294972_-	asparagine synthase B	A0A0P0C1V4	Ostreococcus_lucimarinus_virus	4.7e-85	39.5
WP_046493291.1\|294985_296701_-	DUF3413 domain-containing protein	NA	NA	NA	NA
WP_016856718.1\|297812_298628_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	8.8e-13	28.6
WP_016856717.1\|298627_299620_-	peptide ABC transporter ATP-binding protein SapD	NA	NA	NA	NA
WP_016856716.1\|299619_300519_-	peptide ABC transporter permease SapC	NA	NA	NA	NA
WP_016856715.1\|300505_301468_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_016856714.1\|301464_302262_-	class II glutamine amidotransferase	NA	NA	NA	NA
WP_016856713.1\|302254_302875_-	D-sedoheptulose 7-phosphate isomerase	NA	NA	NA	NA
WP_016856712.1\|303073_303931_+	RNA polymerase sigma factor RpoH	A0A248SJA5	Salicola_phage	1.1e-40	39.4
WP_016856711.1\|303976_304699_-	NAD(P)H-flavin reductase	NA	NA	NA	NA
WP_046493274.1\|304699_306187_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA
WP_016856709.1\|306306_306795_+	transcription/translation regulatory transformer protein RfaH	A0A068C9G5	Rhizobium_phage	2.8e-06	26.0
WP_095591331.1\|307325_307883_-	ribosome-associated protein	NA	NA	NA	NA
WP_016856706.1\|307908_309069_-	glutathionylspermidine synthase family protein	B2ZXR7	Ralstonia_phage	1.9e-85	45.2
WP_029588919.1\|309089_309782_-	DUF1190 family protein	A0A173GEW8	Erwinia_phage	3.5e-34	39.5
WP_016856703.1\|309886_310744_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_016856702.1\|310745_311828_-	peptide chain release factor 1	NA	NA	NA	NA
WP_016856700.1\|313303_313954_+	outer membrane lipoprotein LolB	NA	NA	NA	NA
WP_046493276.1\|313950_314826_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
WP_095591332.1\|314827_316183_-	L-cystine transporter	NA	NA	NA	NA
WP_016856698.1\|316182_316734_-	metal-dependent hydrolase	A0A127AVX7	Bacillus_phage	9.9e-08	33.3
WP_016856697.1\|316730_317561_-	metal ABC transporter permease	NA	NA	NA	NA
WP_046493282.1\|317560_318436_-	metal ABC transporter permease	NA	NA	NA	NA
WP_016856696.1\|318436_319327_-	ATP-binding cassette domain-containing protein	W5SAS9	Pithovirus	6.7e-14	30.2
WP_046493292.1\|319323_320247_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_016856694.1\|320436_321243_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_016856693.1\|321253_322489_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA
WP_016856692.1\|322661_323411_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
WP_016856691.1\|323464_324172_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_046493284.1\|324460_326509_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA
WP_016856689.1\|326585_327641_+	hemin-degrading factor	NA	NA	NA	NA
WP_016856688.1\|327657_328479_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_016856687.1\|328475_329474_+	iron ABC transporter permease	NA	NA	NA	NA
WP_016856686.1\|329464_330295_+	heme ABC transporter ATP-binding protein	W5SAS9	Pithovirus	1.8e-13	28.3
WP_157727284.1\|330451_330655_-	hypothetical protein	NA	NA	NA	NA
WP_095591407.1\|330914_331277_-	hypothetical protein	U5P0R9	Shigella_phage	2.4e-31	61.0
WP_052734986.1\|334759_335755_-	late control protein	A0A088FRU7	Escherichia_phage	7.1e-57	38.8
WP_046492985.1\|335745_335949_-\|tail	tail protein	A0A1W6JT40	Escherichia_phage	4.9e-13	53.0
WP_072052300.1\|335945_336389_-\|tail	phage tail protein	A0A088FQM4	Escherichia_phage	1.2e-24	43.4
WP_095591333.1\|336385_338899_-	hypothetical protein	A0A0M3LPE0	Mannheimia_phage	3.3e-74	33.7
WP_016857830.1\|338891_339014_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_016857831.1\|339037_339286_-\|tail	phage tail assembly protein	Q75QK8	Wolbachia_phage	1.2e-08	42.3
WP_157727285.1\|339251_339452_-	hypothetical protein	NA	NA	NA	NA
WP_046493496.1\|339974_341135_-\|tail	tail protein	D5LGY7	Escherichia_phage	1.4e-133	54.1
WP_040056153.1\|341314_341626_+	membrane protein	NA	NA	NA	NA
WP_029589100.1\|341540_341876_+	BrnA antitoxin family protein	NA	NA	NA	NA
WP_016857835.1\|342084_342318_+	hypothetical protein	NA	NA	NA	NA
WP_016858128.1\|344765_345302_-\|tail	phage tail protein I	D5LGZ2	Escherichia_phage	4.3e-24	36.1
WP_046493298.1\|345303_346185_-	hypothetical protein	A0A088FQL4	Escherichia_phage	5.1e-83	55.7
WP_046493299.1\|346181_346517_-\|plate	phage baseplate protein	V5YTB2	Pseudomonas_phage	1.3e-31	57.7
WP_046493301.1\|346513_347092_-\|plate	phage baseplate assembly protein V	A0A1B2LRU5	Wolbachia_phage	3.9e-23	36.7
WP_029589149.1\|347081_347594_-	DUF1834 family protein	NA	NA	NA	NA
WP_046493304.1\|347620_348070_-	phage virion morphogenesis protein	A0A2P9JZJ5	Alteromonadaceae_phage	4.4e-22	37.4
WP_016858152.1\|348069_348504_-	DUF1320 domain-containing protein	A0A1X9SGZ3	Bradyrhizobium_phage	1.3e-15	36.6
WP_102135347.1\|348511_348775_-	hypothetical protein	NA	NA	NA	NA
WP_046493305.1\|348913_349834_-\|head	head protein	C9DGP2	Escherichia_phage	2.4e-99	56.9
WP_029589140.1\|350967_351261_-	putative addiction module antidote protein	A0A141GEX5	Brucella_phage	4.0e-16	47.3
WP_046493308.1\|351263_351560_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A141GEX6	Brucella_phage	3.8e-22	52.6
WP_046493309.1\|353242_354682_-\|terminase	phage terminase large subunit	A0A0N9RQZ8	Pseudomonas_phage	3.7e-70	36.2
WP_016857916.1\|355178_355376_-	hypothetical protein	NA	NA	NA	NA
WP_016857915.1\|355379_355784_-	hypothetical protein	A0A2I7R6R1	Vibrio_phage	4.2e-16	40.3
WP_046493316.1\|356394_356739_-	hypothetical protein	NA	NA	NA	NA
WP_016857263.1\|356900_359132_-	hypothetical protein	I6NPA6	Burkholderia_phage	2.3e-63	40.6
WP_016857264.1\|359157_359781_-	hypothetical protein	NA	NA	NA	NA
WP_016857265.1\|359801_359987_-	hypothetical protein	H9C161	Pectobacterium_phage	1.0e-09	47.5
WP_016857266.1\|360066_360762_+	helix-turn-helix domain-containing protein	A0A1B0Z078	Pseudomonas_phage	2.2e-60	48.3
WP_046493049.1\|360791_361580_+	hypothetical protein	A0A2H4J8P0	uncultured_Caudovirales_phage	2.7e-14	27.4
WP_016857268.1\|361746_361953_+	hypothetical protein	NA	NA	NA	NA
WP_016857269.1\|362006_362390_+	hypothetical protein	NA	NA	NA	NA
WP_046493046.1\|362386_363523_+	DUF2800 domain-containing protein	A0A1Q1PW76	Pseudoalteromonas_phage	2.0e-87	46.2
WP_095591334.1\|364248_366156_+	XRE family transcriptional regulator	A0A0S0N7U2	Pseudomonas_phage	6.5e-123	36.8
WP_016857273.1\|366152_366377_+	hypothetical protein	NA	NA	NA	NA
WP_016857274.1\|366373_366700_+	VRR-NUC domain-containing protein	Q4ZD25	Staphylococcus_phage	1.3e-12	41.6
WP_016857275.1\|366696_368127_+	DEAD/DEAH box helicase	A0A2I7R066	Vibrio_phage	4.1e-146	55.2
WP_016857276.1\|368119_368410_+	excisionase family DNA-binding protein	NA	NA	NA	NA
WP_046493241.1\|369644_371021_-\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA	NA	NA	NA
WP_016857279.1\|371134_372778_-	membrane protein insertase YidC	NA	NA	NA	NA
WP_016857280.1\|372780_373050_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	2.2e-13	50.7
WP_016857281.1\|373028_373376_-	ribonuclease P protein component	NA	NA	NA	NA
WP_016857282.1\|373390_373531_-	50S ribosomal protein L34	NA	NA	NA	NA
WP_046493245.1\|373960_381040_+	hypothetical protein	NA	NA	NA	NA
WP_016857719.1\|381231_381816_+	hypothetical protein	NA	NA	NA	NA
WP_029589083.1\|381897_382929_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_046493246.1\|383027_383417_+	hypothetical protein	A0A1W6JP34	Morganella_phage	9.7e-18	26.3
WP_082093623.1\|383945_385001_+	hypothetical protein	NA	NA	NA	NA
WP_157727286.1\|385276_385462_-	hypothetical protein	NA	NA	NA	NA
WP_072052320.1\|385452_385644_-	hypothetical protein	NA	NA	NA	NA
WP_095591335.1\|386051_386285_+	hypothetical protein	NA	NA	NA	NA
WP_016857836.1\|386350_387379_+	hypothetical protein	NA	NA	NA	NA
WP_157727286.1\|387667_387853_-	hypothetical protein	NA	NA	NA	NA
WP_059108268.1\|387843_388053_-	hypothetical protein	A0A077KB22	Edwardsiella_phage	3.0e-10	54.4
WP_095591336.1\|388447_389974_+	hypothetical protein	NA	NA	NA	NA
WP_157727325.1\|389980_390343_-	hypothetical protein	NA	NA	NA	NA
WP_016857906.1\|390730_390892_-	hypothetical protein	A0A192Y7L1	Salmonella_phage	3.0e-05	64.1
WP_046493767.1\|391277_391544_+	HigA family addiction module antidote protein	NA	NA	NA	NA
WP_046493765.1\|391587_392055_-\|lysis	lysis protein	Q2A0C4	Sodalis_phage	3.6e-19	48.1
WP_082093638.1\|392140_392482_-	lysozyme	B6SCY8	Bacteriophage	2.9e-18	66.2
WP_046493763.1\|392864_393119_-	hypothetical protein	NA	NA	NA	NA
WP_095591337.1\|393257_393734_-	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	9.4e-15	42.7
WP_095591338.1\|394135_395635_+	hypothetical protein	NA	NA	NA	NA
WP_046493619.1\|395892_396129_-	hypothetical protein	NA	NA	NA	NA
WP_052734987.1\|396434_397496_+	hypothetical protein	NA	NA	NA	NA
WP_082093603.1\|397614_397776_-	hypothetical protein	NA	NA	NA	NA
WP_016858254.1\|398080_398401_-	hypothetical protein	NA	NA	NA	NA
WP_016858271.1\|398940_399198_+	hypothetical protein	NA	NA	NA	NA
WP_082093602.1\|399173_399572_+\|tail	phage tail tape measure protein	A0A1S5SFC1	Streptococcus_phage	9.6e-05	32.0
WP_072052300.1\|399568_400012_+\|tail	phage tail protein	A0A088FQM4	Escherichia_phage	1.2e-24	43.4

DBSCAN-SWA_3

469777 : 583063

104

Enterobacteria_phage(23.08%)

portal,lysis,capsid,head,tRNA,tail,integrase,protease,holin

attL 481204:481263|attR 503774:504164

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_095591342.1\|469777_471703_-\|protease	ATP-dependent zinc metalloprotease FtsH	G8DDJ2	Micromonas_pusilla_virus	5.9e-116	44.0
WP_029588995.1\|471762_472389_-	23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE	NA	NA	NA	NA
WP_015874311.1\|472540_473017_-	transcription elongation factor GreA	NA	NA	NA	NA
WP_016857215.1\|473431_474262_+	co-chaperone DjlA	NA	NA	NA	NA
WP_016857214.1\|474277_474769_-	YajQ family cyclic di-GMP-binding protein	NA	NA	NA	NA
WP_016857213.1\|475069_476473_-	hypothetical protein	NA	NA	NA	NA
WP_016857212.1\|477046_477592_-	hypothetical protein	NA	NA	NA	NA
WP_130651582.1\|477749_478001_-	hypothetical protein	NA	NA	NA	NA
WP_095591343.1\|480009_481203_-\|integrase	tyrosine-type recombinase/integrase	K7PHK0	Enterobacteria_phage	6.3e-92	48.7
WP_046493225.1\|481177_481405_-	hypothetical protein	A0A1V0E5M4	Salmonella_phage	5.1e-11	51.4
481204:481263	attL	NA	NA	NA	NA
WP_095591344.1\|481979_482663_-	ATP-binding protein	A0A2D1GLT5	Escherichia_phage	8.9e-75	59.3
WP_046493232.1\|483032_483353_+	hypothetical protein	Q3LZQ4	Bacteriophage	1.1e-14	81.5
WP_157727289.1\|483357_483621_-	hypothetical protein	NA	NA	NA	NA
WP_095591345.1\|483867_484518_-	helix-turn-helix domain-containing protein	K7PLZ5	Enterobacterial_phage	1.6e-28	36.8
WP_059108296.1\|484617_484842_+	hypothetical protein	A0A1W6JP24	Morganella_phage	2.1e-09	50.9
WP_050879637.1\|484891_485374_+	hypothetical protein	R9TRN6	Vibrio_phage	8.3e-11	31.3
WP_050879636.1\|485600_486152_+	ash family protein	NA	NA	NA	NA
WP_046493793.1\|486297_487203_+	replication protein	K7PGT1	Enterobacteria_phage	3.4e-37	40.2
WP_046493792.1\|487199_488057_+	ATP-binding protein	K7PLU3	Enterobacteria_phage	2.0e-84	61.0
WP_016858231.1\|488268_489012_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_016858045.1\|489317_489527_+	hypothetical protein	NA	NA	NA	NA
WP_046493493.1\|489822_490146_-	hypothetical protein	NA	NA	NA	NA
WP_046493898.1\|490477_490657_+	hypothetical protein	NA	NA	NA	NA
WP_016857815.1\|496799_497816_-	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	7.6e-30	31.3
WP_052734989.1\|497870_498830_-	murein hydrolase activator NlpD	A0A0K2CNY2	Brevibacillus_phage	2.7e-08	32.4
WP_100103738.1\|498840_499326_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_016857812.1\|499334_500060_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_016857811.1\|500062_500377_-	cell division protein FtsB	NA	NA	NA	NA
WP_016857810.1\|500504_500885_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA
WP_016857809.1\|500894_501464_-	hypothetical protein	NA	NA	NA	NA
WP_095591346.1\|501481_502576_-	DNA-protecting protein DprA	NA	NA	NA	NA
WP_046493065.1\|502714_503773_-\|integrase	tyrosine-type recombinase/integrase	K7PHK0	Enterobacteria_phage	8.9e-90	46.8
WP_046493225.1\|503747_503975_-	hypothetical protein	A0A1V0E5M4	Salmonella_phage	5.1e-11	51.4
WP_157727290.1\|504075_504471_-	hypothetical protein	Q7Y5W2	Haemophilus_phage	4.5e-31	58.5
503774:504164	attR	NA	NA	NA	NA
WP_016857985.1\|504698_505346_-	hypothetical protein	A0A0R6PHV6	Moraxella_phage	2.5e-34	38.2
WP_046493236.1\|505373_506027_-	exonuclease	A0A0U2BXF3	Paracoccus_phage	9.5e-50	47.8
WP_016857986.1\|506044_506620_-	hypothetical protein	G9L666	Escherichia_phage	2.1e-37	47.6
WP_095591347.1\|507669_508077_+	DUF1640 domain-containing protein	Q3LZQ4	Bacteriophage	1.3e-12	81.6
WP_157727291.1\|508081_508363_-	hypothetical protein	NA	NA	NA	NA
WP_040056181.1\|508843_509440_-	helix-turn-helix domain-containing protein	Q76H56	Enterobacteria_phage	2.1e-16	31.6
WP_029589125.1\|509548_509773_+	transcriptional regulator	Q76H55	Enterobacteria_phage	5.0e-19	65.7
WP_050879637.1\|509847_510330_+	hypothetical protein	R9TRN6	Vibrio_phage	8.3e-11	31.3
WP_050879636.1\|510555_511107_+	ash family protein	NA	NA	NA	NA
WP_046493793.1\|511253_512159_+	replication protein	K7PGT1	Enterobacteria_phage	3.4e-37	40.2
WP_095591349.1\|512155_513007_+	ATP-binding protein	K7PLU3	Enterobacteria_phage	6.9e-85	61.4
WP_046493771.1\|513003_513213_+	hypothetical protein	NA	NA	NA	NA
WP_046493753.1\|513209_513590_+	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	4.4e-15	42.9
WP_046493754.1\|513586_513925_+	hypothetical protein	NA	NA	NA	NA
WP_016858311.1\|514066_514312_+	hypothetical protein	NA	NA	NA	NA
WP_095591350.1\|514692_515091_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_016858197.1\|515090_515327_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_046493773.1\|515443_515626_-	hypothetical protein	NA	NA	NA	NA
WP_015873507.1\|516802_516991_+\|holin	holin	B6SD41	Bacteriophage	2.8e-15	69.6
WP_046493798.1\|516987_517485_+	lysozyme	B6SD42	Bacteriophage	7.2e-58	69.6
WP_052735024.1\|517587_517860_+	glycoside hydrolase family protein	B6SCY8	Bacteriophage	5.4e-15	66.7
WP_052735025.1\|517945_518425_+\|lysis	lysis protein	Q2A0C4	Sodalis_phage	2.7e-22	43.7
WP_029589155.1\|518486_518846_+	HNH endonuclease	Q9B020	Phage_GMSE-1	1.6e-43	77.9
WP_095591325.1\|521190_522429_+\|portal	phage portal protein	A0A1P8DTI5	Proteus_phage	4.0e-158	67.3
WP_095591351.1\|522531_523389_+	peptidase S14	K7PH05	Enterobacteria_phage	1.3e-86	57.5
WP_016858055.1\|523401_524688_+\|capsid	phage major capsid protein	K7PM57	Enterobacteria_phage	3.7e-146	67.1
WP_082665831.1\|524738_524948_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_016858053.1\|525048_525432_+\|head	phage head closure protein	U5P0R0	Shigella_phage	3.0e-11	32.4
WP_016858052.1\|525418_525946_+	hypothetical protein	Q8HAC8	Salmonella_phage	1.5e-42	53.8
WP_059108330.1\|525942_526386_+	hypothetical protein	A0A192Y5U4	Salmonella_phage	2.9e-42	56.1
WP_157727292.1\|526461_526788_+	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_095591353.1\|526856_528356_+\|tail	phage tail protein	Q8HAC5	Salmonella_phage	1.5e-159	60.8
WP_059108327.1\|528355_528712_+\|tail	phage tail protein	U5P076	Shigella_phage	2.1e-43	69.5
WP_095591354.1\|528708_529062_+\|tail	phage tail assembly protein	Q8W621	Enterobacteria_phage	4.1e-23	50.0
WP_095591355.1\|529116_530985_+\|tail	phage tail tape measure protein	Q8HAC2	Salmonella_phage	2.4e-162	51.3
WP_095591323.1\|533971_534379_+	hypothetical protein	U5P0R9	Shigella_phage	1.8e-35	54.9
WP_095591406.1\|536282_536906_+\|tail	tail fiber protein	Q9MCR6	Enterobacteria_phage	1.4e-37	47.9
WP_095591356.1\|537079_537526_+	hypothetical protein	NA	NA	NA	NA
WP_157727293.1\|537506_537659_-	hypothetical protein	NA	NA	NA	NA
WP_095591357.1\|537658_538864_-	DNA (cytosine-5-)-methyltransferase	E5E3X6	Burkholderia_phage	9.9e-186	79.6
WP_095591358.1\|539325_539913_+	peptide deformylase	E3SLL2	Synechococcus_phage	1.3e-18	40.2
WP_016856947.1\|539922_540882_+\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	3.1e-09	38.1
WP_095591359.1\|540881_542171_+	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA
WP_016856945.1\|542188_543565_+	Trk system potassium transporter TrkA	NA	NA	NA	NA
WP_016856944.1\|543629_545933_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA
WP_016856941.1\|546614_547658_+	rod shape-determining protein	NA	NA	NA	NA
WP_016856940.1\|547667_548528_+	rod shape-determining protein MreC	NA	NA	NA	NA
WP_016856939.1\|548663_549152_+	rod shape-determining protein MreD	NA	NA	NA	NA
WP_046493553.1\|550759_552205_+\|protease	metalloprotease TldD	NA	NA	NA	NA
WP_046493554.1\|552306_552822_+	DedA family protein	NA	NA	NA	NA
WP_016856936.1\|552837_553599_+	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA
WP_046493571.1\|553651_554260_+	hypothetical protein	NA	NA	NA	NA
WP_016856934.1\|554256_555888_+	ubiquinone biosynthesis regulatory protein kinase UbiB	A0A2P0VMP1	Tetraselmis_virus	8.2e-26	24.5
WP_016856933.1\|555911_556166_+	twin-arginine translocase TatA/TatE family subunit	NA	NA	NA	NA
WP_046493572.1\|556169_556382_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_046493555.1\|556414_557134_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	3.4e-32	34.3
WP_016856930.1\|557141_558092_-	type I pantothenate kinase	NA	NA	NA	NA
WP_029588951.1\|558398_559751_+	chromosomal replication initiator protein DnaA	A0A0A8IKB2	Aurantimonas_phage	3.0e-05	38.2
WP_046493556.1\|559767_560874_+	DNA polymerase III subunit beta	B4UTW9	Rhizobium_phage	1.7e-43	32.3
WP_016856926.1\|560892_561972_+	DNA replication/repair protein RecF	NA	NA	NA	NA
WP_016856925.1\|561996_564411_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	G3M9Z3	Bacillus_virus	2.4e-13	58.7
WP_046493557.1\|564567_565308_-\|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	NA	NA	NA	NA
WP_016856923.1\|565462_566254_+	inositol monophosphatase	NA	NA	NA	NA
WP_016856922.1\|566344_567742_-	class II fumarate hydratase	NA	NA	NA	NA
WP_016856921.1\|567765_568827_-	quinolinate synthase NadA	NA	NA	NA	NA
WP_102135339.1\|569084_569885_-	hypothetical protein	NA	NA	NA	NA
WP_016858098.1\|575854_577459_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	4.1e-62	46.0
WP_046493265.1\|577549_578836_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
WP_016856949.1\|578911_580363_+	Trk system potassium transporter TrkH	NA	NA	NA	NA
WP_016856950.1\|580453_583063_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	4.5e-183	41.1

DBSCAN-SWA_4

635813 : 687637

Bacteriophage(77.5%)

portal,tRNA,tail,integrase,holin,terminase

attL 646064:646119|attR 685052:685107

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016857190.1\|635813_636836_-\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_046493009.1\|637007_637724_+	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_016857130.1\|637864_638542_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
WP_016857131.1\|638555_639368_-	adenine-specific DNA-methyltransferase	A0A1S6L1V5	Vibrio_phage	2.9e-72	51.8
WP_016857132.1\|639487_640591_-	3-dehydroquinate synthase	NA	NA	NA	NA
WP_046493036.1\|640624_641146_-	shikimate kinase AroK	NA	NA	NA	NA
WP_016857134.1\|641248_642082_-	RIO1 family serine kinase	NA	NA	NA	NA
WP_095591361.1\|642192_644337_-	phosphate acetyltransferase	NA	NA	NA	NA
WP_016857136.1\|644392_645616_-	acetate kinase	NA	NA	NA	NA
646064:646119	attL	NA	NA	NA	NA
WP_016857137.1\|646133_647306_-\|integrase	site-specific integrase	Q9T1R0	Acyrthosiphon_pisum_secondary_endosymbiont_phage	1.6e-225	97.9
WP_029588974.1\|647758_649144_-	DEAD/DEAH box helicase	Q3LZN8	Bacteriophage	3.8e-258	93.2
WP_072052301.1\|649154_649487_-	hypothetical protein	A0A2H4J5H6	uncultured_Caudovirales_phage	1.2e-24	52.4
WP_072052302.1\|649536_649749_-	hypothetical protein	NA	NA	NA	NA
WP_016857140.1\|649814_650591_-	hypothetical protein	B6SD57	Bacteriophage	7.9e-96	68.7
WP_016857141.1\|650948_651419_-	KilA-N domain-containing protein	Q3LZN6	Bacteriophage	9.9e-33	51.5
WP_016857142.1\|651525_651822_+	hypothetical protein	Q3LZN5	Bacteriophage	1.1e-21	67.3
WP_157727294.1\|651830_652295_-	VRR-NUC domain-containing protein	Q3LZN4	Bacteriophage	1.4e-44	94.7
WP_102135324.1\|656103_656574_-	HNH endonuclease	R9ZY26	Cellulophaga_phage	6.4e-08	45.9
WP_102135323.1\|656473_656608_-	hypothetical protein	NA	NA	NA	NA
WP_029588976.1\|656897_657680_-	ORF6N domain-containing protein	B6SCX2	Bacteriophage	1.9e-73	58.8
WP_016857146.1\|657728_657950_+	hypothetical protein	NA	NA	NA	NA
WP_016857147.1\|657954_658407_+	hypothetical protein	Q3LZQ4	Bacteriophage	3.2e-20	89.3
WP_016857148.1\|658492_658687_-	hypothetical protein	Q3LZQ3	Bacteriophage	8.5e-15	66.2
WP_016857149.1\|658757_659312_-	DUF2815 family protein	Q3LZQ2	Bacteriophage	2.9e-92	89.1
WP_082093606.1\|659327_660647_-	DUF2800 domain-containing protein	B6SCX9	Bacteriophage	6.7e-228	90.4
WP_046493013.1\|660618_661527_-	hypothetical protein	B6SCY0	Bacteriophage	1.3e-108	70.3
WP_052734988.1\|662094_662877_-	LexA family transcriptional regulator	Q9T1U7	Acyrthosiphon_pisum_secondary_endosymbiont_phage	1.4e-127	88.8
WP_016858029.1\|663174_665430_+	ATPase	Q9T1U5	Acyrthosiphon_pisum_secondary_endosymbiont_phage	0.0e+00	92.3
WP_046493018.1\|665902_666349_+	antitermination protein Q	B6SD12	Bacteriophage	1.7e-79	100.0
WP_157727295.1\|666771_667584_+	toxin	B6SD13	Bacteriophage	7.6e-158	100.0
WP_016857352.1\|667669_668305_+	hypothetical protein	B6SD14	Bacteriophage	9.3e-119	100.0
WP_016857351.1\|668339_668519_+\|holin	holin	B6SD15	Bacteriophage	1.2e-26	100.0
WP_029589018.1\|668535_668820_+\|holin	phage holin, lambda family	B6SD16	Bacteriophage	1.1e-47	98.9
WP_016857349.1\|668830_669271_+	lysozyme	B6SD17	Bacteriophage	8.0e-77	100.0
WP_016857347.1\|669487_669874_+	hypothetical protein	B6SD18	Bacteriophage	5.4e-61	100.0
WP_130651570.1\|669758_670034_+	hypothetical protein	B6SD19	Bacteriophage	3.3e-44	98.9
WP_016857345.1\|670095_670509_+	hypothetical protein	B6SD20	Bacteriophage	4.4e-69	99.3
WP_029589016.1\|670525_671935_+\|terminase	PBSX family phage terminase large subunit	B6SD21	Bacteriophage	2.0e-275	99.8
WP_046493024.1\|671934_674103_+\|portal	portal protein	B6SD22	Bacteriophage	0.0e+00	99.9
WP_016857342.1\|674147_675044_+	phage scaffold protein	B6SD23	Bacteriophage	2.6e-151	100.0
WP_016857341.1\|676382_676574_+	hypothetical protein	NA	NA	NA	NA
WP_016857340.1\|676554_677034_+	packaged DNA stabilization protein p27	B6SCV9	Bacteriophage	1.8e-74	90.6
WP_082093607.1\|676987_678421_+	hypothetical protein	Q9T1S0	Acyrthosiphon_pisum_secondary_endosymbiont_phage	9.4e-260	91.6
WP_016857338.1\|678420_678951_+	hypothetical protein	B6SCW1	Bacteriophage	3.2e-72	85.2
WP_016857337.1\|678950_679418_+	DUF2824 family protein	B6SCW2	Bacteriophage	1.6e-83	94.8
WP_016857336.1\|679395_680025_+	hypothetical protein	B6SCW3	Bacteriophage	5.3e-82	93.6
WP_016857335.1\|680036_681425_+	DNA transfer protein	B6SCW4	Bacteriophage	2.0e-243	95.0
WP_046493028.1\|681424_683302_+	hypothetical protein	B6SCW5	Bacteriophage	7.6e-310	89.1
WP_016858042.1\|683330_684356_+\|tail	tailspike protein p36	B6SCW6	Bacteriophage	9.8e-102	66.4
WP_046493031.1\|684334_684802_+\|tail	tail fiber assembly protein	B6SCW7	Bacteriophage	2.3e-50	67.6
WP_046493316.1\|686276_686621_+	hypothetical protein	NA	NA	NA	NA
685052:685107	attR	NA	NA	NA	NA
WP_046493314.1\|686747_687233_+	M15 family metallopeptidase	A0A2D1GMU0	Marinobacter_phage	4.6e-41	55.2
WP_016857915.1\|687232_687637_+	hypothetical protein	A0A2I7R6R1	Vibrio_phage	4.2e-16	40.3

DBSCAN-SWA_5

1017701 : 1026768

uncultured_Caudovirales_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_029589045.1\|1017701_1019108_+	Si-specific NAD(P)(+) transhydrogenase	A0A2K5B2C5	Erysipelothrix_phage	6.0e-33	27.2
WP_029589044.1\|1019219_1019765_+	inorganic diphosphatase	A0A2H4J8U1	uncultured_Caudovirales_phage	1.6e-50	59.8
WP_016857475.1\|1019857_1021765_+	molecular chaperone DnaK	A0A0N9QXN8	Chrysochromulina_ericina_virus	4.2e-146	49.3
WP_016857474.1\|1021892_1023008_+	molecular chaperone DnaJ	A0A0P0YNN4	Yellowstone_lake_phycodnavirus	8.9e-24	30.4
WP_016857473.1\|1023086_1024262_+	Na+/H+ antiporter NhaA	A0A2H4J5W3	uncultured_Caudovirales_phage	1.5e-85	49.4
WP_016857472.1\|1024502_1024766_-	30S ribosomal protein S20	NA	NA	NA	NA
WP_016857471.1\|1024969_1025284_+	DNA-binding transcriptional regulator Fis	NA	NA	NA	NA
WP_016857470.1\|1025364_1026768_+\|tRNA	glutamate--tRNA ligase	A0A222YZ70	Escherichia_phage	2.7e-09	24.2

DBSCAN-SWA_6

1197191 : 1204121

Planktothrix_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016856830.1\|1197191_1197950_-	phospholipid ABC transporter ATP-binding protein MlaF	G9BWD6	Planktothrix_phage	2.9e-18	30.1
WP_016856829.1\|1198207_1199185_+	arabinose-5-phosphate isomerase KdsD	A0A0A0Q3B9	Pectobacterium_bacteriophage	1.2e-19	35.8
WP_016856828.1\|1199200_1199758_+	3-deoxy-manno-octulosonate-8-phosphatase KdsC	A0A140XBD6	Dickeya_phage	1.7e-47	69.7
WP_016856827.1\|1199771_1200386_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_016856826.1\|1200360_1200906_+	lipopolysaccharide ABC transporter substrate-binding protein LptA	NA	NA	NA	NA
WP_016856825.1\|1200905_1201631_+	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	7.6e-24	29.8
WP_016856824.1\|1201711_1202182_+	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA
WP_016856823.1\|1202279_1203134_+	RNase adapter RapZ	A0A1P8D5W0	Corynebacterium_phage	5.8e-07	29.8
WP_016856822.1\|1203200_1204121_+	aspartate carbamoyltransferase	A7RB08	Paramecium_bursaria_Chlorella_virus	6.9e-46	39.5

Anti-CRISPR protein detection

Acr_ID: NZ_CP016303.1|WP_130651582.1|477749_478001_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP016303.1|WP_130651582.1|477749_478001_-|hypothetical-protein

477749_478001_-

83 aa aa

469777-583063

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP016303_2	Orphan	2.1\|526635\|18\|NZ_CP016303\|CRT	526635-526652	18	526611-526628	2
NZ_CP016303_2	Orphan	2.2\|526671\|18\|NZ_CP016303\|CRT	526671-526688	18	526611-526628	2

1. spacer 2.1|526635|18|NZ_CP016303|CRT matches to NZ_CP016303 position: 526611-526628, mismatch: 2

cgaggaagaacccgaaga	CRISPR spacer
cgaggaagaactcgagga	Protospacer
***********.***.**

2. spacer 2.2|526671|18|NZ_CP016303|CRT matches to NZ_CP016303 position: 526611-526628, mismatch: 2

cgaagaagaacccgagga	CRISPR spacer
cgaggaagaactcgagga	Protospacer
***.*******.******

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP016303

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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