CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP023141	Aeromonas dhakensis strain KN-Mc-6U21 chromosome, complete genome	10 crisprs	WYL,csa3,DEDDh,DinG,RT,cas3	0	6	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP023141_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023141_1

725214-725316

Orphan

Consensus_repeat	Method
TTGATGACACCCAGGCTCTCAAACATG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP023141_1

>merge|NZ_CP023141|1|725214-725316|CRISPRCasFinder
TTGATGACACCCAGGCTCTCAAACATGGCGCGCCCCTCTGGACTTGGAAAAGAGCCCGCTCAGGCAGGTCCAGACGTTGATGACTCCCAGGCTCTCAAACATG

>NZ_CP023141|1|1|725214-725316|CRISPRCasFinder
TTGATGACACCCAGGCTCTCAAACATG	GCGCGCCCCTCTGGACTTGGAAAAGAGCCCGCTCAGGCAGGTCCAGACG
TTGATGACTCCCAGGCTCTCAAACATG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023141.1\|WP_095591711.1\|734066_735041_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176109
NZ_CP023141.1\|WP_042051580.1\|713669_714464_-\|glutamate-racemase	unknown	unknown	gnl\|CDD\|234851
NZ_CP023141.1\|WP_025202473.1\|726933_728118_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224992
NZ_CP023141.1\|WP_095591704.1\|716712_717615_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176120
NZ_CP023141.1\|WP_095591710.1\|730824_732012_-\|trans-2-enoyl-CoA-reductase-family-protein	unknown	unknown	gnl\|CDD\|237460
NZ_CP023141.1\|WP_095591707.1\|722027_722759_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225818
NZ_CP023141.1\|WP_005307030.1\|736016_736178_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023141.1\|WP_043171157.1\|714569_716447_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|226664
NZ_CP023141.1\|WP_095591709.1\|729015_730806_+\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_CP023141.1\|WP_167385260.1\|722752_724426_-\|histidine-kinase	unknown	unknown	gnl\|CDD\|225814
NZ_CP023141.1\|WP_010635645.1\|735132_736032_+\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|183067
NZ_CP023141.1\|WP_005306985.1\|718657_718960_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023141.1\|WP_010635647.1\|733074_734088_+\|tryptophan--tRNA-ligase	unknown	unknown	gnl\|CDD\|183400
NZ_CP023141.1\|WP_005306992.1\|720727_721918_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|273323
NZ_CP023141.1\|WP_026139291.1\|717726_718653_+\|sodium-dependent-bicarbonate-transport-family-permease	unknown	unknown	gnl\|CDD\|377582
NZ_CP023141.1\|WP_095591708.1\|725525_726746_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341031
NZ_CP023141.1\|WP_010635648.1\|732448_732883_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|185073
NZ_CP023141.1\|WP_095591706.1\|719528_720653_+\|5-(carboxyamino)imidazole-ribonucleotide-synthase	unknown	unknown	gnl\|CDD\|235674
NZ_CP023141.1\|WP_005307011.1\|728281_728806_-\|non-heme-ferritin	unknown	unknown	gnl\|CDD\|224445
NZ_CP023141.1\|WP_011704108.1\|719022_719532_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	unknown	unknown	gnl\|CDD\|376377

Protein	Function_ID	Function_description	E-value
NZ_CP023141.1\|WP_095591711.1\|734066_735041_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176109	cd08417, PBP2_Nitroaromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of dinitrotoluene and similar compounds, such as DntR, NahR, and LinR. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. Also included are related LysR-type regulators clustered together in phylogenetic trees, including NodD, ToxR, LeuO, SyrM, TdcA, and PnbR. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.30329e-42
NZ_CP023141.1\|WP_042051580.1\|713669_714464_-\|glutamate-racemase	gnl\|CDD\|234851	PRK00865, PRK00865, glutamate racemase; Provisional.	1.632e-110
NZ_CP023141.1\|WP_025202473.1\|726933_728118_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224992	COG2081, COG2081, Predicted flavoproteins [General function prediction only].	0
NZ_CP023141.1\|WP_095591704.1\|716712_717615_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176120	cd08429, PBP2_NhaR, The C-terminal substrate binding domain of LysR-type transcriptional activator of the nhaA gene, encoding Na+/H+ antiporter, contains the type 2 periplasmic binding fold. NhaR is a positive regulator of the LysR family and is known to be an activator of the nhaA gene encoding a Na(+)/H(+) antiporter. In Escherichia coli, NhaA is the vital antiporter that protects against high sodium stress, and it is essential for growth in high sodium levels, while NhaB becomes essential only if NhaA is not available. The nhaA gene of nhaAR operon is induced by monovalent cations. The nhaR of the operon activates nhaAR, as well as the osmC transcription which is induced at elevated osmolarity. OsmC is transcribed from the two overlapping promoters (osmCp1 and osmP2) and that NhaR is shown to activate only the expression of osmCp1. NhaR also activates the transcription of the pgaABCD operon which is required for production of the biofilm adhesion, poly-beta-1,6-N-acetyl-d-glucosamine (PGA) .Thus, it is suggested that NhaR has an extended role in promoting bacterial survival. This substrate-binding domain has significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.38388e-79
NZ_CP023141.1\|WP_095591710.1\|730824_732012_-\|trans-2-enoyl-CoA-reductase-family-protein	gnl\|CDD\|237460	PRK13656, PRK13656, enoyl-[acyl-carrier-protein] reductase FabV.	0
NZ_CP023141.1\|WP_095591707.1\|722027_722759_-\|response-regulator-transcription-factor	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	7.40489e-74
NZ_CP023141.1\|WP_043171157.1\|714569_716447_-\|TonB-dependent-receptor	gnl\|CDD\|226664	COG4206, BtuB, Outer membrane cobalamin receptor protein [Coenzyme metabolism].	0
NZ_CP023141.1\|WP_095591709.1\|729015_730806_+\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	7.08062e-52
NZ_CP023141.1\|WP_167385260.1\|722752_724426_-\|histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	5.86252e-179
NZ_CP023141.1\|WP_010635645.1\|735132_736032_+\|EamA-family-transporter	gnl\|CDD\|183067	PRK11272, PRK11272, putative DMT superfamily transporter inner membrane protein; Provisional.	1.13998e-23
NZ_CP023141.1\|WP_010635647.1\|733074_734088_+\|tryptophan--tRNA-ligase	gnl\|CDD\|183400	PRK12282, PRK12282, tryptophanyl-tRNA synthetase II; Reviewed.	0
NZ_CP023141.1\|WP_005306992.1\|720727_721918_-\|MFS-transporter	gnl\|CDD\|273323	TIGR00890, Uncharacterized_MFS-type_transporter_YhjX, oxalate/formate antiporter family transporter. This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	6.76309e-104
NZ_CP023141.1\|WP_026139291.1\|717726_718653_+\|sodium-dependent-bicarbonate-transport-family-permease	gnl\|CDD\|377582	pfam05982, Sbt_1, Na+-dependent bicarbonate transporter superfamily. Family of bacterial proteins that are likely to be part of the Na(+)-dependent bicarbonate transporter (sbt) family. Members carry 10TMS in a 5+5 duplicated structure. The loop between helices 5 and 6 in Synechocystis PCC6803 is likely to be the location for regulatory mechanisms governing the activation of the transporter.	1.6576e-128
NZ_CP023141.1\|WP_095591708.1\|725525_726746_+\|MFS-transporter	gnl\|CDD\|341031	cd17478, MFS_FsR, Fosmidomycin resistance protein of the Major Facilitator Superfamily of transporters. Fosmidomycin resistance protein (FsR) confers resistance against fosmidomycin. It shows sequence similarity with the bacterial drug-export proteins that mediate resistance to tetracycline and chloramphenicol. This FsR family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	6.25644e-103
NZ_CP023141.1\|WP_010635648.1\|732448_732883_+\|universal-stress-protein	gnl\|CDD\|185073	PRK15118, PRK15118, universal stress protein UspA.	1.41472e-43
NZ_CP023141.1\|WP_095591706.1\|719528_720653_+\|5-(carboxyamino)imidazole-ribonucleotide-synthase	gnl\|CDD\|235674	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed.	3.14261e-178
NZ_CP023141.1\|WP_005307011.1\|728281_728806_-\|non-heme-ferritin	gnl\|CDD\|224445	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism].	1.81857e-85
NZ_CP023141.1\|WP_011704108.1\|719022_719532_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	gnl\|CDD\|376377	pfam00731, AIRC, AIR carboxylase. Members of this family catalyze the decarboxylation of 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR). This family catalyze the sixth step of de novo purine biosynthesis. Some members of this family contain two copies of this domain.	6.96575e-80

>NZ_CP023141.1|WP_167385260.1|722752_724426_-|histidine-kinase
MLENQMMLLAVFERAALMLMTLFFLTRTRPFQRLFQKRDHTPAELVLVAAIFCLFAVFSTYTGIPVEGALINVRIIAIISGGILFGPWVGIPAGVISGLHRYLIDLDGHTSIPCLIASIIAGLLATWLHLRCRKSRLWLYGILAGMACEGLTMLLIWQLTEPHAVGVEIVSHIAYPMIAGALCIGLIIKLVQDLDDEKELIAAKQAKLALDIANKTLPFFQNIDRHSLSQVCAIIRSEISADAVAITDTRDVLAYVGVGKDYYELDEHHAISAMTQRAVLLDQIIINNDLRQYHLADFHSVIIIPLRENGAVSGTLKIYYRRTHSITSSLKEMAVGLSQLISTQMEVSRIEQLKEMTRKAEFTALQSKINPHFLFNALNAISSLIRIRPQQARQLIANLADYLRYNLNKGDTLIDIQEELQQVRDYVAIEQARFGDKLEVVFEVDDVHIQVPSLLLQPLVENAILHGIQPRSAPGRVTIEVKQLAGGIRVAVRDTGYGISQAVIDGVAAGRVESRSIGLMNVHQRVKLLYGDGLHLKRLEPGTEVSFYLPDQESMPC
>NZ_CP023141.1|WP_095591707.1|722027_722759_-|response-regulator-transcription-factor
MLKAIIVEDEYLAREELIYLVNQHSQIEIVASFEDGLEAFKYLQDHEVDVVFLDIQIPSIDGLLLAKNLHKSSHPPHIVFVTAYKEFAVEAFELEAFDYILKPYNEPRLISLLQKLELAGKSQTGQGSEPGTPHNRTVNLVKGERIIVTPCEQIYYAEADEKLTHVYTRDDRYVMTMTLSEFVSRLPAEGFFRCHRSYCVNINKIREIVPWFNSTYLIRLHDLPFEVPVSRSNIRAFRQLMRL
>NZ_CP023141.1|WP_005306992.1|720727_721918_-|MFS-transporter
MTIDLNRTRYLTLLGTIITQFALGSVYTWSLFNAQLSDKLDEPVSQVAFAFGLLSLSLAVASSLAGKLQERFGVRNVTLGAGVLLGIGFFLTAHASNLAMLYLCAGILVGFADGTGYLMTLSNCVKWFPERKGLISACSIGAYGLGSLGFKYINLLLLSSNGLETTFQLWGLIAMSMVLVGGMLMKDAPKQAAAVQQSESRDFTLAEAMRKPQYWMLALMFLTACMSGLYVIGVAKDIGENMVGLPAVVAANAVAIIAMANLGGRLVLGILSDKMSRIRVITIAQLITLAGMALLLFVPLNANLFFVAVACVAFSFGGTITVYPSLVSDFFGLNNLTKNYGVIYLGFGLGSIIGSIVASLFGGFMATFNLILVLLVVALVLSLTIRLPAPVSVERA
>NZ_CP023141.1|WP_095591706.1|719528_720653_+|5-(carboxyamino)imidazole-ribonucleotide-synthase
MILPPATLGMLGGGQLGRYFVMAAHRLGYKVVVLDPDPTSIAGAAADHHIVAAYDDPTALHDLASRCAAVTCEFENVPATALALLEQYKPVRPAAGAVRICQDRREEKAFLSRAGIPVAPNQTLQPGEPLPELPDHLFPAILKTAREGYDGKGQWTIQAADQLPPALAASGVPCVLEKRLPLEGEFSLTLARSPSGAIGALPLVQNWHSGGILDQTRSPANVPALEADARRIAEQLIAALDYVGVLTVEFFLVAGKLLVNELAPRPHNSGHPSLDNAECSQFELQVRALCDLPLPARIAVRPAMLLNLLGDLWQAGTPDWAALLALPGVHLHLYGKGEPRPGRKMGHVTITAADWPTVEETCQRVRQLLGLPPR
>NZ_CP023141.1|WP_011704108.1|719022_719532_+|5-(carboxyamino)imidazole-ribonucleotide-mutase
MNTPPLIGLVMGSDSDWPVMQAAARILKEHGVPYEARVVSAHRTPDLLFEYAASARERGLRAIIAGAGGAAHLPGMVAAKTTIPVLGVPIPTRQLKGMDSLLSIVQMPKGVPVATFAIGEAGAANAGLFAVSLLSVAQDGDAPRYQQQLDGFRANERDRVLALTLEDPA
>NZ_CP023141.1|WP_005306985.1|718657_718960_+|hypothetical-protein
MQTEIRTLLTVITEANLEPTLLRTLTREGLRGYTITDARGRGDHGERNASWSESGNIRLEAICSREQAERLLAHLQSRYYPDYAMVAFLQPVEIVRPEKF
>NZ_CP023141.1|WP_026139291.1|717726_718653_+|sodium-dependent-bicarbonate-transport-family-permease
MLDVVVLFFLFGLLAGLVRSELKLPPALYDTLSLFLLLAIGLKGGVGLAQQSLQPLLPQLALVILLGMLQTLAGFAVLRLKMNRVDAAATAAHYGSVSVATFAVGVNWLTERGINFESQLSIFLAVMEIPAILVGIVLAQGVSRQTRWRRLAHETFLGKGVTLLLGGMAIGYLAGPDGIAPLKPLFVDLFKGALALFLLEMGLIVARQCQDLRRHGLFLLGFALLMPLASAGLGLVIGQLMGLSLGGLTLLATLAASASYIAVPATMRIAVPQANPGLSLSAVLGVTFPFNIMLGIPLYHSWARHFTE
>NZ_CP023141.1|WP_095591704.1|716712_717615_-|LysR-family-transcriptional-regulator
MLNYKQLYYFWHVARSGSVTRAAEQLHLTPQTVSGQVAELELSLGVALFNRVGRRLALTAAGRQALEQAGAIFSLGADLEHTLRHASQELTMQVGIADSVPRTLAFELLAPAMALATPLRLVCHEERAEQLFSELASHKLDMVLIDRPLPPDSGVRGYNHELGRSPLALFASPELAARARQGFPASLEGLPLLIPGEKSATHDSLLAWYRQQGIHPHLVGQFDDSTLMKSFGKAGMGIFPAPLAMAEEIARLYGVERVATLTEVTLSYYLVSAGRHLSHPGVQAVMAGAKQRLAALGGKK
>NZ_CP023141.1|WP_043171157.1|714569_716447_-|TonB-dependent-receptor
MSKKLLAAALLPTAAFAQPLTIPVNPTMVVTATRVAQPASSVLAPVNVVTRDEIDRLQAQTVTDVVKTLPGVEVVSNGGRGQLSSLRVRGGTSSQTLVLVDGVRSASLTAGMTELNNLPLNQVERIEYIRGARATIYGSDAIGGVINIITRPDPATNKHKFNVGAGSHKQRQAAFSSASQIGEAGQLKVAGGFDDETGYNVHPIAGVNDGDKHGHRGYNAMLDYQHALTGNWDLFGTTRWFRNIAQYDRSSAASAWGPAYHQRNETWTENQSYQLGSRYHDERYLSELRGAFSKQDAYDYPDSSGRDQATDRLYTRQYTLNWVNNVKLDENWTLGGGADWQRDMLDASSRSSGTAFPSDADERDNTGLYALAQFDNQTWQAELSGRSDDNKQFGRHNTWQTGAGWRFVEDYRLSARYGTGFRAPSFNDLYYPSSGNPDLKPEESKSRELMLDGQTAGVEWRVTGYRNDFEQMIQWAPTNPSDSNSLWSPQNVGKARIEGVELEGEFDTGWLSHRVSAEYKDPKDKVTDKQLQLISRKGAKWVTQAQWQQFDGSLSWIYQGERYGDAANTTQLGGYSVWNLAVGYQVAPSWKVSGKINNLLDKEYQTAVGYPADERAYYVTVDYSL
>NZ_CP023141.1|WP_042051580.1|713669_714464_-|glutamate-racemase
MANILVFDSGMGGLTIYREIRRALPAHNYLYCFDNANFPYGELSEPALIAACTRLVTTMVARHHIDLVVIACNTASTIALPALREALAIPVVGVVPAIKPAAALTRNGCIGLLATPGTVSREYTHELIAQFAPGKRVLLKGATELVIEAERKLAGLPVNMALLREVLADWLEGEEHPDTLVLGCTHFPLLDEEIRQLMPACQLVDSGSAVAKRVAHLLTGLVTTPTRMEDVGGSAYCTRLDAQTQKLTAPLQAWGLSSLEEVGF
>NZ_CP023141.1|WP_095591708.1|725525_726746_+|MFS-transporter
MEKSLSTDQPLAAAAAHDALNRTSYPVIAAISFSHLLNDMMQSVLLAIYPLLKLGLNLSFAQIGLITLTYQFTGSLLQPLIGLYTDRRPMPYSLPFGMGFTMIGLLSLSQAASFGAVLLSAMLIGIGSSVFHPESSRVARMAAGSQPGLAQSLFQIGGNLGSAIGPLLAALIIVPRGQSSAAWFSLFALVGVIVLSLVGRWSSHHAANFHKRMKAHLGHGLSRRQIGWSLAILGLLMFSKFFYMASLSSYYTFYLMDKFSLSLDSAQLYLFAFLFAVAAGTVLGGPIGDRIGRKRVIWISILGVAPFTLLLPHVDLFWTSVLSVIIGLILASAFSAILVYAQELVPGKIGTISGLFFGIAFGMGGIGATLLGQLADATSIETVYRVCAYLPLIGLLTVFLPTLRKG
>NZ_CP023141.1|WP_025202473.1|726933_728118_-|NAD(P)/FAD-dependent-oxidoreductase
MKQFDVVVIGAGAAGLMCAAQAGYRGRSVLVLDNAKKPGRKILISGGGRCNFTNHQAGPHAFLSANPHFCKSALARYTQQDFIELVDRHGLNYHEKTLGQLFCDESAKEIVDILLTECDWAGVALQFQTEILTVSKNDEVFVLTTSQGEITCHSLVVATGGLSMPKLGATPYGFKLAEQFGLKVLPTRAGLVPFTLHQADKEAFADLAGVSLPVAVTAEDGTCFKEAMLFTHRGLSGPAILQISSFWLAGEKIHINLLPELDIAATLREWAQAHPAQELKTVLGRELPKRFVDKLVELGQLVSKPMRQYNERELEAVATLLGDWQILPNGTEGYRTAEVTLGGVDTNELSSKTMEARKVAGLYFIGEVVDVTGWLGGYNFQWAWSSGWVAGQYC
>NZ_CP023141.1|WP_005307011.1|728281_728806_-|non-heme-ferritin
MLAKAMIEKLNEQINLEFYSSNLYLQMSAWCEDKGFEGAATFLRQHAVEERQHMERLFTYVSETGAMPLLGAIDAPPHEFKSLGDIFRTTLEHEYHITKCINGLAHVAFTTQDYSTFNFLQWYVAEQHEEEKLFKSIVDRLSLVGEDGKGLYFIDKELAELAKGAPASIMDGNA
>NZ_CP023141.1|WP_095591709.1|729015_730806_+|GGDEF-domain-containing-protein
MALALLWMTQLQAAPSLLKEAELQAARDPVGYLQRLDASPQQDMELFYARSLAQAALGRYPQALLDNARARGLASAQQETLRLLDFRLQQIALTLDTEAPDQALTLLEQLRPAVAGHPQQTSEWHALNGLALYRTQQLSPAIAELKTAFRLKQSVPDSPIASLQCARLLMTLGNLYADLNLAREAEGYYLEALQRMVQLGEPNSQIIIRANMARLYIDTDRPTQARRLLDNLLSNPDLAPDYRAIILGYQAMALNAQHDWAGALRTLDEAQALYRQLGYPEAGTRLQETRARALQGSGEKQLALQVLTSQGSTGAASKALQASLLADQGRYPEAYQALSEYVSDYKQHFNQTLSQHAAAFQAEMDLARSEASNRVLQQENENKRQQLLHQQSARHYQLMLVGLLAGALLLLGLTTHRLHRSSRHLYKLATFDQLTELPNRRALLERLASRWQQEGPLTLIIIDIDHFKQINDRHGHQAGDRAIQRLARELRSWAPDLQLVGRWGGEEFLVAVPLPAADCWYLAEQLRQRIGQIEQPRMTISIGVAGRSAADDGLGQLIHRADMAMYQAKRQGRNQTILATEPGSPEEPEALASSVA
>NZ_CP023141.1|WP_095591710.1|730824_732012_-|trans-2-enoyl-CoA-reductase-family-protein
MIIHPQIQGCVARNCHPIGCRAAVLQQIARIRAAGPFNGPKRVLVLGASSGFGLASRIALAFGAGADTIGVSFERGPSDKGLGSAGWYNNIWFRTEAEQAGRVAINLIGDAFSDQMRQQAIDVIRQQLGQVDLVIYSLASGIRVLPDGTQVRSVLKTTGQPFSGWGLDLEHDTLVQQSLDPATPEEIRDTVSVMGGEDWQLWLQALQQADCLAPGAQTVAYSYIGPESTYPLYRDGTIGYAKEHLHATAETINLQLAEIGGHAWVSVCKALVTKASAYIPVLPVYLGLLMGVMKERGVHEGCIEQMQRLFAGKMYGPQGVVADGNRLIRMDDHELDPAVQAAVSALWSKVTPDNFHALGDFAGLRQDFMQLNGFELAGVDYGEPVDVASLTELLP
>NZ_CP023141.1|WP_010635648.1|732448_732883_+|universal-stress-protein
MNGTYYKHILAAIDLSEDNRKVIEKAVDRARSNGAKLSVIHVDVDLKDLYTEMIDIDIDNVQDQVIAEAKEKLEAFLASVDYPIEKKLVICGDLSERVNQAVRDYQIDLLVCGHRQSFWSLLTSSARQLMNTVPCDLLVVPLQK
>NZ_CP023141.1|WP_010635647.1|733074_734088_+|tryptophan--tRNA-ligase
MHNPVILTGDRPTGKLHIGHYVGSLRQRVAAQHHYRQFVMIADLQALTDNGHNPAKVTDHVLEVMADYLAAGLDPAKTTFCLQSALPALAELTTYYLNLVSVARLERNPTVKAEIQQKGFERSLPAGFLIYPVSQAADITAFRATHVPVGEDQLPMLEQTNEIVRRFNSLVGKEVLTECQPILSDTGRLPGIDGKAKMSKSLGNTIELGMSSDEIKQAVFAMYTDPNHLKVSDPGQVEGNTVFAYLDAFHPDKALVAEMKAHYQRGGLGDMRCKQVLNDCLQTLLAPMRERREAAIADKRQLLRLLQQGTEQARALTDEVLAEVKGAMGLDYFAGLN
>NZ_CP023141.1|WP_095591711.1|734066_735041_-|LysR-family-transcriptional-regulator
MELPLSRLDLNLLTVFDMLMQERNVTRAAERLHLSQSTVSHALGRLRTALDDPLFVMSRREMMPTERAKALAGPVRQALAMLEQGLRQAKGFDPASARRIFRIATPGSVEHGLVPALVERLHRHAPHCRLEVCELANSDYERELEKGELDLVIGFADANHLSPRLWREPWFNNPLVCLSPLGSELPDVLGPDDLVSRPHIHTSSWGHSQAMVDLWLARFGVERELGVRLPSFMAVPPLMATGRYLVVVPEMIGRHFCRYYPLRLHQLDPAIPIVYLMAGHPLTAHDEAIGWFKGLLHRLAFERYGADALGSPAQRGADQFNPAK
>NZ_CP023141.1|WP_010635645.1|735132_736032_+|EamA-family-transporter
MRSYLLLLAIGLLWGSQFIFMHQAVTELPPIMVAAGRALCGSLTLGLLCLFMRLKSEHTPWRTYMLIALLDATLPFIMVAWGQQYVDSAIAAVVMGCIPFVTILMAPLLVSGEKITKGGLVSVIIGFVGVLVLFWPKLASGMNAGLLGAMAILFGASCFAIGLLMIKRFAKDHPVVVARNILISSAIQLLLAAPFVTDLSALTLPSQQAIGAVAVLGVFCTGLVYFLYMALIQKAGPTFASFSNYLVPLFGVMLGALFLGEQIQSTTGVALALILGSVALNQWAQQRRVQREAALCQAS
>NZ_CP023141.1|WP_005307030.1|736016_736178_+|hypothetical-protein
MSGILTTLCGGLVVIAGWQYRQRLVGLLGLLMVLLPWFFDSKLQAMLSYALSA

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Crispr_ID: NZ_CP023141_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023141_2

1545581-1545728

Orphan

Consensus_repeat	Method
CGCAGGATCAAGAGGGCGGCGGCAAAGCGCCGGGTCTTGGGCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP023141_2

>merge|NZ_CP023141|2|1545581-1545728|CRISPRCasFinder
CGCAGGATCAAGAGGGCGGCGGCAAAGCGCCGGGTCTTGGGCAGGTTAGTGTGGCTCAGTCGGCCAGCACTACTCGCTCGGCTGACAGATGGTGCATCCATTCACGCAGGATCAAGAGGGCAGCGGCAAAGCGCCGGGTCTTGGGCAG

>NZ_CP023141|2|2|1545581-1545728|CRISPRCasFinder
CGCAGGATCAAGAGGGCGGCGGCAAAGCGCCGGGTCTTGGGCAG	GTTAGTGTGGCTCAGTCGGCCAGCACTACTCGCTCGGCTGACAGATGGTGCATCCATTCA
CGCAGGATCAAGAGGGCAGCGGCAAAGCGCCGGGTCTTGGGCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023141.1\|WP_017764057.1\|1543203_1544073_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP023141.1\|WP_095592041.1\|1541292_1541727_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP023141.1\|WP_005309014.1\|1550921_1551482_-\|carbonic-anhydrase	unknown	unknown	gnl\|CDD\|100039
NZ_CP023141.1\|WP_095592043.1\|1544292_1545525_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883
NZ_CP023141.1\|WP_095592042.1\|1541853_1543101_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223587
NZ_CP023141.1\|WP_065017934.1\|1552428_1552713_+\|Pathogenicity-locus	unknown	unknown	unknown
NZ_CP023141.1\|WP_095592038.1\|1537936_1538701_+\|CphA-family-subclass-B2-metallo-beta-lactamase	unknown	unknown	gnl\|CDD\|293845
NZ_CP023141.1\|WP_017788712.1\|1546261_1547170_+\|S-adenosyl-l-methionine-hydroxide-adenosyltransferase-family-protein	unknown	unknown	gnl\|CDD\|224824
NZ_CP023141.1\|WP_095592037.1\|1534600_1536304_+\|amidase	unknown	unknown	gnl\|CDD\|180626
NZ_CP023141.1\|WP_095592046.1\|1561765_1562446_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP023141.1\|WP_005308985.1\|1540226_1540658_-\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|225039
NZ_CP023141.1\|WP_157737158.1\|1536597_1537278_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023141.1\|WP_017779351.1\|1560485_1561769_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|236532
NZ_CP023141.1\|WP_017779352.1\|1559955_1560456_+\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|240037
NZ_CP023141.1\|WP_095592044.1\|1547363_1550414_+\|cytochrome-c-peroxidase	unknown	unknown	gnl\|CDD\|376999
NZ_CP023141.1\|WP_095592039.1\|1538866_1540159_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240533
NZ_CP023141.1\|WP_095592040.1\|1540654_1541296_-\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224103
NZ_CP023141.1\|WP_095592045.1\|1552709_1553759_+\|nitronate-monooxygenase	unknown	unknown	gnl\|CDD\|240081
NZ_CP023141.1\|WP_005309011.1\|1550482_1550776_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023141.1\|WP_010635071.1\|1551712_1552360_+\|ribonuclease-T2-family-protein	unknown	unknown	gnl\|CDD\|238513

Protein	Function_ID	Function_description	E-value
NZ_CP023141.1\|WP_017764057.1\|1543203_1544073_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.66159e-39
NZ_CP023141.1\|WP_095592041.1\|1541292_1541727_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	9.7368e-16
NZ_CP023141.1\|WP_005309014.1\|1550921_1551482_-\|carbonic-anhydrase	gnl\|CDD\|100039	cd00710, LbH_gamma_CA, Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.	4.04445e-79
NZ_CP023141.1\|WP_095592043.1\|1544292_1545525_+\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.81708e-18
NZ_CP023141.1\|WP_095592042.1\|1541853_1543101_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	9.99445e-152
NZ_CP023141.1\|WP_095592045.1\|1552709_1553759_+\|nitronate-monooxygenase	gnl\|CDD\|240081	cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.	4.9705e-80
NZ_CP023141.1\|WP_095592038.1\|1537936_1538701_+\|CphA-family-subclass-B2-metallo-beta-lactamase	gnl\|CDD\|293845	cd16287, CphS_ImiS-like_MBL-B2, metallo-beta-lactamases, subclass B2; MBL-fold metallo-hydrolase domain. Includes Aeromonas hydrophyla CphA, Aeromonas veronii ImiS, and Serratia fonticola Sfh-I. MBLs (class B of the Ambler beta-lactamase classification) are a diverse group of metallo-enzymes that are capable of catalyzing the hydrolysis of a wide range of beta-lactam antibiotics. MBLs have been divided into three subclasses B1, B2 and B3, based on sequence/structural relationships and substrates, with the B1 and B2 MBLs being most closely related to each other. B2 MBLs have a narrow substrate profile relative to subclass B1 MBLs that includes carbapenems, and they are active with one zinc ion bound in the Asp-Cys-His site, binding of a second zinc ion in the modified 3H site (Asn-His-His) inhibits catalysis.	1.28574e-159
NZ_CP023141.1\|WP_017788712.1\|1546261_1547170_+\|S-adenosyl-l-methionine-hydroxide-adenosyltransferase-family-protein	gnl\|CDD\|224824	COG1912, COG1912, Uncharacterized conserved protein [Function unknown].	3.75556e-123
NZ_CP023141.1\|WP_095592037.1\|1534600_1536304_+\|amidase	gnl\|CDD\|180626	PRK06565, PRK06565, amidase; Validated.	0
NZ_CP023141.1\|WP_095592046.1\|1561765_1562446_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.40363e-82
NZ_CP023141.1\|WP_005308985.1\|1540226_1540658_-\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|225039	COG2128, COG2128, Uncharacterized conserved protein [Function unknown].	1.66248e-27
NZ_CP023141.1\|WP_017779351.1\|1560485_1561769_-\|HAMP-domain-containing-protein	gnl\|CDD\|236532	PRK09470, cpxA, envelope stress sensor histidine kinase CpxA.	1.36311e-49
NZ_CP023141.1\|WP_017779352.1\|1559955_1560456_+\|NUDIX-domain-containing-protein	gnl\|CDD\|240037	cd04681, Nudix_Hydrolase_22, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	2.41088e-48
NZ_CP023141.1\|WP_095592044.1\|1547363_1550414_+\|cytochrome-c-peroxidase	gnl\|CDD\|376999	pfam03150, CCP_MauG, Di-haem cytochrome c peroxidase. This is a family of distinct cytochrome c peroxidases (CCPs) that contain two haem groups. Similar to other cytochrome c peroxidases, they reduce hydrogen peroxide to water using c-type haem as an oxidisable substrate. However, since they possess two, instead of one, haem prosthetic groups, bacterial CCPs reduce hydrogen peroxide without the need to generate semi-stable free radicals. The two haem groups have significantly different redox potentials. The high potential (+320 mV) haem feeds electrons from electron shuttle proteins to the low potential (-330 mV) haem, where peroxide is reduced (indeed, the low potential site is known as the peroxidatic site). The CCP protein itself is structured into two domains, each containing one c-type haem group, with a calcium-binding site at the domain interface. This family also includes MauG proteins, whose similarity to di-haem CCP was previously recognized.	3.74733e-75
NZ_CP023141.1\|WP_095592039.1\|1538866_1540159_+\|hypothetical-protein	gnl\|CDD\|240533	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli Wzx and related proteins from other gram-negative bacteria are thought to act as flippases, assisting in the membrane translocation of lipopolysaccharides including those containing O-antigens. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	6.31792e-09
NZ_CP023141.1\|WP_095592040.1\|1540654_1541296_-\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|224103	COG1182, AcpD, Acyl carrier protein phosphodiesterase [Lipid metabolism].	1.38314e-36
NZ_CP023141.1\|WP_010635071.1\|1551712_1552360_+\|ribonuclease-T2-family-protein	gnl\|CDD\|238513	cd01062, RNase_T2_prok, Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far. This family includes RNase Rh, RNase MC1, RNase LE, and self-incompatibility RNases (S-RNases). Plant T2 RNases are expressed during leaf senescence in order to scavenge phosphate from ribonucleotides. They are also expressed in response to wounding or pathogen invasion. S-RNases are thought to prevent self-fertilization by acting as selective cytotoxins of "self" pollen. Generally, RNases have two distinct binding sites: the primary site (B1 site) and the subsite (B2 site), for nucleotides located at the 5'- and 3'- terminal ends of the sessil bond, respectively. This CD includes the prokaryotic RNase T2 family members.	4.99041e-41

>NZ_CP023141.1|WP_095592043.1|1544292_1545525_+|MFS-transporter
MSSSLCAAAPSTAATSHRAILLFLPLALMSALLNSSVPTPLYPHYQQALALSDVSLTLIYGGYAGGVLISLFGVGNLAGRVSDLRAMILPALLAVLGGALLFSLADSFWSLLLARVLAGIGTGALTGAANVALLRFGPRDGGKRAALSATLSFTAGLALGPVFSGLALQLECYPTQLPFLLIMGLAACAMAGVALSWPSRAQGAPAAETQQGRGSLGEGLKATGVAFFICALALFTAWAVAASLLAIGPKVASQLLGLRDLGLFGYLIAAYMVLSGLCQLWARRLDARHTMQSGALALALCMLLFAGAVHAQSWWLAVVGLLVAGYAQGAVFVGSATLVNRIAPAASHARLVSLFYVIAYVANWVPVLLGWVSDGAGVQAAVDLLTVGSVLISLGLAWAAWRTRFEPAAG
>NZ_CP023141.1|WP_017764057.1|1543203_1544073_-|LysR-family-transcriptional-regulator
MINWDDARFFLALARQGTLRGAAGVLGVDQATVGRRITALEQNLGSKLFIRTPKLYDLSPLGEAMLADASAMEQAIKAIERKASAGDQSLCGEVRIATTDTLAQAFVLPALTLLRERHPGIRLSLQTAVSVSDIAYREADLAIRGLRPDNDELVIKRLTTIEMGLYASRDYLARHGTPKSGHALSQHALLLFARELVSRHWHSLCGEPLHEPNVVLQCNAQLLLLAAARQGLGIALLSTFLADKEPELVRVLPTLCDPVDIWLVLHPDLQKASRVRAVVDALEEVFHCR
>NZ_CP023141.1|WP_095592042.1|1541853_1543101_-|DEAD/DEAH-box-helicase
MSIASFADLALSPRLQQTLTELGYAAPTPVQAGAIPLILAGRDLMAGAQTGTGKTAAFVLPLLEQLLQHPASDAPRPIRALVLVPTRELAVQVHESVTRYAKGSDLTSTLVYGGVSIAAQVEALKAGVDLLIATPGRLLDHLRQGALTLAELRHLVFDEADRMLDMGFMDEIKALLKQIPADRQTLLFSATCDDNLFALSKVLLHDPALIEVAPRNTTAAEVEQRVYTVDGDRKLALVEHMLKVKGWAPALIFSRTRQGADKLAQQLGKAGINALAFHGDLSQGAREKVLLEFRAGTLQALVATDVAARGLDITDLNYVINMEFPFVAEDYVHRIGRTGRAGNKGLAITLFSPEDAPLLEKVEAVLDTRLPQQWFPGFEPDLTRFEPEPRRSSKAAQKQRARKQALAGNKSKARR
>NZ_CP023141.1|WP_095592041.1|1541292_1541727_-|GNAT-family-N-acetyltransferase
MAHTLHPLDDEAAFAASFTLMQQLRPHLSSPERYVAQLTRQTQQGYRLLAVRDAERIVGLAGYRLQENLIYGRFVYIDDLVVSPDLQRSGLGAQLLDAVRAEAMRLGCDHLVLDTGLHNALAQRFYFRCGLLSRGMHFCEDLRP
>NZ_CP023141.1|WP_095592040.1|1540654_1541296_-|NAD(P)H-dependent-oxidoreductase
MNQVLLINASAQGTASHANRLALDLVACLRQAHPALALVERPVGTDTLPALSQAYVQALTTTTPFDAPELALSETLIRELEQSDALLIATPLHNFTLPAALKLWIDYVLRIHRTFRSSAEGKLGLLADRPVYVLVGSGGFHQGPRAGQPDFLTPYLRHALNTLGLFNIHFFYLQGLVFGDEAVRQTIDTNRALLAQQPLFSRLADPHHLGVLP
>NZ_CP023141.1|WP_005308985.1|1540226_1540658_-|carboxymuconolactone-decarboxylase-family-protein
MTQPRLPFSTLSAEAYQGLRATSDALAAGPLGAPLLELVYLRISQINGCAFCLGKHAKTLRECEVSQQKLDCLAGWRVSDLFSERERAALAWAETLTYVHEAGAPDERYAPLKSHFSDREISDLTLAAALMNAFNRLAVGMLL
>NZ_CP023141.1|WP_095592039.1|1538866_1540159_+|hypothetical-protein
MHAIQDEQPDSLGRLKQAFITGMWASLASIIIGFAFKVWLAQWVAKGDLALFNSVVDLISLSLILMTGFRSSMVVSYSQTKNDRDIINIFRYFLIGMVLLTWGLVIPYIKHGLHIRAEYLQLVGVIFGLGLKVYFTNLVAMYRMYGISNRVTWLEPLANGLLFMACYFALGLDALASLFYGLTFSSLGIAGYMYLHRRRAIATRPLARVELGPEMRSYVKKSFTASLEAGASILMIYITVLLTIRHFSLDELGDFQVVVRPIFTYMTLLFVFPIYRFVLPELAVNLRSGDHRQIRLIRRWIFRLSAIVSLVFFLVMLLAGKPLVSLLFPADYLGAVPVLLHFSLFFIFMMLNGYQLAYIKAHGHFTQSLLIRAVGIVALVAAYYLVARFTTNVVAIIVALGLGYLVMFVLSTLAEQRILRALPPVLATDS
>NZ_CP023141.1|WP_095592038.1|1537936_1538701_+|CphA-family-subclass-B2-metallo-beta-lactamase
MMKGWIKCGLAGAVVLMASFWGGSVRAAGMSLTQVSGPVYVVEDNYYIQENSMVYFGARGVTVVGATWTPDTARELHKLIKRVSSKPVLEVINTNYHTDRAGGNAYWKSIGAKVVSTRQTRDLMKSDWAEIVAFTRKGLPDYPDLPLVLPNVVHEGNFTLQEGKLRAFYAGPAHTPDGIFVYFPDEQVLYGNCILKEKLGNLSFADVKAYPQTLERLKAMKLPIKTVVGGHDSPLHGPELIDHYEALIKAAPQS
>NZ_CP023141.1|WP_157737158.1|1536597_1537278_-|hypothetical-protein
MSEDSKKNGISIIMLLSWVGIAGATSASAAWTVGRAFMADELEQYKSANHLKIQDAIIKLTTLSDSLNKKLDKINDYENLIKEKQEMQSIINQLRTEKNTIQDNNKKLLQQKEKEINTYKRTLQEKDEIISQTNNRILSLVGATIDIPVGQALPVGNKKIKVGVTSTTTMYNWASVVCGSYNNPTMKVGDAFEKDIDDKTYTITLTKINNTSAEFSYETSKKRNTL
>NZ_CP023141.1|WP_095592037.1|1534600_1536304_+|amidase
MIEVTEVSIAELRGALEAGRTTAVELVKAYLARIKAYNGPETDTKLNALVVPNPDALKEAQASDERRARGETLGPLDGIPYTAKDSYLVKGLTAASGSPAFKDLVAQRDAFTVERLRAAGAICLGKTNMPPMANGGMQRGVYGRAESPYNADYLTAPFASGSSNGAGTATAASFSAFGLAEETWSSGRGPASNNGLCAYTPSRGVISVRGNWPLTPTMDVVVPYARTMADLLEVLDVVVADDADTRGDLWRLQPWVQLPKASEVRPASYLELAVKADALKGKRLGVPRMFINKDELAGTSDNPGIGGPTGQRIHTRDSVIALWEQARQALEAAGAEIIEVDFPLVSNCEGDRPGAPTVFNRGIVSPEFLNDELWELSGWAFDDFLRANGDPKLKQLADVDGPQIFPHDPGTLPNREGDLAAGMEEYVNMAKRGIKRFDEIPTVPDGLRGLEKTRKLDLEDWMDGLKLDAVLFPTVADVAPADADVNPASADIAWSNGIWVANGNLAIRHLGVPTVTVPMGVMADIGMPVGLTFAGRAYDDNNLLRFASAFESTGSKRMVPPRTPPLG
>NZ_CP023141.1|WP_017788712.1|1546261_1547170_+|S-adenosyl-l-methionine-hydroxide-adenosyltransferase-family-protein
MDIRTAPRALALALLLASGLATANEALVIQTDFGLKDGAVSAMKGVAFGVDRTLPLYDLTHEIPAYNIWEASYRLYQTLQYWPKGTVFVSVVDPGVGTDRKSVVLKTKSGHYIVSPDNGTLTLVAEHFGIDTVRQIDEKTNRLKGSEKSYTFHGRDVYAYTGARLASGAISYEQVGPKLPAEVVKIPYQPAVAEQDGTLRGTIPILDVQYGNVWTNIDDSLLTKAGINKGDNACIKISEGDALKYEGKAPYVSSFGDVPEGQPLVYLNSLLQVSVALNMDSFAAQHQVQSGANWHISLKKCS
>NZ_CP023141.1|WP_095592044.1|1547363_1550414_+|cytochrome-c-peroxidase
MKTSLLLVSLLILTACNDNHSQAPVPSVPVVTPPVVEPPVEPPVVTPPTEPPVEPVPTHTRSELTVRLDVTTRLGLGAALLLRQAATGIVVSGEVGEERPLVMTLPAGLLLDQPLELVGSDGSYILRAATARVADLGATALSARRADAPSLRLDEEETALFLLADRNGDGTLDQSEWGQLAEIRLQQQTLIQDYAALLLAQRQPGAELNYPDSWQMLLALRADQGERSWYRRSNSAPIESARRLLYPAQPSQPDEPETAELLRLDEQGRLTSGTDWRCLHDVRSTAGVKGSQYWLHASGSSALPQASRAGLGVVPTGCGRSDWRLPGLAEFERLLAADKQSWRYPHTFALAVPTRIWLQDGAGRPALYQPATGSWLEEGEGSVIWYALAPYPVRPSVIRDDSMPDMAALRAQYAGPAAQWPAARVDEGVEWQELGPLPAVPFPADNPYSRAKVVLGQQLFFDKRLSRAQDISCASCHDPQKGWSDGLSVSVGHQGQKGTRNAPSILNSAFSSSQFWDGRVASLEEQSLHPIQNPVEMALDHDELLARLQASRDYPAAFATAFGDEGISLERIAKAIATFERTIISRDSDFERFVQGDGQALSDKALWGMHLYRTDGRCMNCHSGPLLSQYRFESVGLAYYGRNLEDRGRFLHTRQKADMGRFKTPSLRDVAFTAPYMHNGVFPILAQRIGSSVQGVVAMYNFGVTKWSSGVGFPTGVAQYDPFFPQASDHLHALGLSNDELDAIGEFLRSVSAEPRRTPATVAELGLSGVADEAPVPAIVIDLQVTPAAPRLEVGQALALQAELRLSDGTRNPVQGPLQWRSMTPERVSVDGDGVLRALAVGPARVLVSTGERMLELAVQVVDAQPDFSQGCRHPELAAGELIFVCPLTRAEADRLALAYDGSARDEDGDYNPFPHDYVVMNQERARDYCQQLVARGHDDWRLPAARELTALFAAYHQVGEEMKLLTEQGWPLYSRLWSSDAPNDDGEAPLLDPGSGELITDLPQEAHGVACVRAR
>NZ_CP023141.1|WP_005309011.1|1550482_1550776_-|hypothetical-protein
MSRYPLALTLLLASLSAQACELPAPPAGRPDVRPPALPAPLYHASKLGQDPQATAQALFKNIPPAEADKRYEVVVSVRELPPQPIRLQPAAAPLKGQ
>NZ_CP023141.1|WP_005309014.1|1550921_1551482_-|carbonic-anhydrase
MIRKNPSGHLPVIDESAYIDKTAIICGKVIIKENVFVGPYAVIRADEVDASGDMEPIVIGANSNIQDGVVIHSKSGAAVTIGEYTSIAHRSIVHGPCEVGNRVFIGFNSVLFNCHIGDGAVVRHNSVVDGCDLPPEFYVPSTTRINQQSDLDHIPRVSVDAAEFSEDVAHTNIDLVKGYKALSNEF
>NZ_CP023141.1|WP_010635071.1|1551712_1552360_+|ribonuclease-T2-family-protein
MKKIVVLLGMLLAPWFSSAVQAKGEAGAFDYYAMALSWSPEHCAIKPADRDQCSRQLGFVLHGLWPQYQRGYPSSCTRERLDPAMEQQFAGLYPSRFLYRHEWEKHGTCSGLSQHDFHQLASDLRQKVKIPAAYQSPAEPLRKSRFQLKADLASANDWLAPDNITVACADGGRFLREVYICLNKEGTDAVTCSDEMQKRELRSCGQPDFLLRSVR
>NZ_CP023141.1|WP_065017934.1|1552428_1552713_+|Pathogenicity-locus
MKSKQGFSGEERALLLGVKGVGPTVIGRLEQLGYHNLVQLAAADTSHIVQLVASMLGSTCWQNSPQARAAIDGAIALARSQVGGVTPERQEATS
>NZ_CP023141.1|WP_095592045.1|1552709_1553759_+|nitronate-monooxygenase
MTLFAELGLRYPIIQAPMAGVQDSALALAVTRAGALGSLPAAMLSLATLREELSRLAASGGPFNINFFCHRQEAPDPAVQARWLQRLAPYYDEYGVRDTAGTAAPSRAPFNAEHAAMVAEFKPAVVSFHFGLPEPELLARVKTSGAKILASATTVAEARWLADHGADAIIAQGLEAGGHRGHFLEDDLSLQQGTFTLLPQIVEAVRLPVIAAGGIVDGVGIRAALALGASAVQMGTAFLCCHEATTSTLHRAALHSPAGHHTALTNLFSGRPARGIVNRLMRELGPLSEAVPAFPHASGALAALRSAAEQRGDAGCSPLWAGQNVSGCRDWPAAELISRWVKEAGLADV
>NZ_CP023141.1|WP_017779352.1|1559955_1560456_+|NUDIX-domain-containing-protein
MFCPRCGSGTLQQRSEKEFACGCGFHYFQNVASAVMVALCWQDELLVAVRARDPGRGLLDLPGGFVDPGESLEEALVRELKEELGLDLAGETPRYLGSYANVYPYDDVVYHTCDTVFLLELAHKPLVVAADDVAACEWRKLAGLAPAEFAFRSTGAAISQLQRLRG
>NZ_CP023141.1|WP_017779351.1|1560485_1561769_-|HAMP-domain-containing-protein
MILKGRLFWKILFGFWFTIIMMSQLLWVAFSLYRHEGPPEQRMANQLAERQLEAAASLLQRQGPAAVAALQASWPAQERRLLQLEPITTEPATTLGGRILLGADGQRYRLDYDGAGLQQLLAPPQPHRNWLNMPPPMWWIGGLGGLFFSALLAWHLTRPMNRFRQGFARLAQGDLAVRLYPAMRRRHDEISDAARDFDAMAERLQLLVESREQLLHDVSHELRSPLARLQLAIGLAQQDPARIEGSLERIQLETQRMDKMIGELLTLTRAGHGERDGEEYYDLQGLVDAVVSDARYEAQHMGVEIKTWVDETREYTVCGQAELIRRALDNVLRNALRFSQAGQCIHLTLMHQGSEFVIEVADQGMGVDESKLSSIFDPFVRIGSPAAGKGYGLGLAITRKAIQAQGGRVEARNGEEGGLIVTLHLPG
>NZ_CP023141.1|WP_095592046.1|1561765_1562446_-|response-regulator-transcription-factor
MKILLVDDDLELGTMLSEYLGGEGFATTHVLTGKSGVQHALSGNYAAVVLDIMLPDLNGSEVLRQIRRDSRIPVIMLTAKGDNIDRVIGLEMGADDYVPKPCYPRELVARLRAVLRRVEPAPANPGKEQGLRLGELVLSPATRQCHWQTQPLELTATEFNLLELLLRSPERVVSKDELSLHGLGRPREPYDRSVDVHICNIRQKLQALAGDAVGIETVRSIGYRLA

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Crispr_ID: NZ_CP023141_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023141_3

2224436-2224524

Orphan

Consensus_repeat	Method
TTTACTGAATACCCAGCAACTCCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP023141_3

>merge|NZ_CP023141|3|2224436-2224524|CRISPRCasFinder
TTTACTGAATACCCAGCAACTCCACATCGAAGATCAGCACGGGCGCTGGGTGGGATCTGGCCGGTTTACTGAATACCCAGCAGCTCCAC

>NZ_CP023141|3|3|2224436-2224524|CRISPRCasFinder
TTTACTGAATACCCAGCAACTCCAC	ATCGAAGATCAGCACGGGCGCTGGGTGGGATCTGGCCGG
TTTACTGAATACCCAGCAGCTCCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023141.1\|WP_095592324.1\|2234435_2235713_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
NZ_CP023141.1\|WP_095592318.1\|2213917_2217172_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|182169
NZ_CP023141.1\|WP_095592323.1\|2231995_2233459_-\|NAD-dependent-succinate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143421
NZ_CP023141.1\|WP_043159657.1\|2213052_2213730_-\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NZ_CP023141.1\|WP_095592321.1\|2223422_2224190_-\|dioxygenase	unknown	unknown	gnl\|CDD\|153375
NZ_CP023141.1\|WP_005303036.1\|2235790_2236291_-\|SRPBCC-domain-containing-protein	unknown	unknown	gnl\|CDD\|176856
NZ_CP023141.1\|WP_095592316.1\|2211007_2211709_+\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|237368
NZ_CP023141.1\|WP_095592322.1\|2230557_2231847_-\|4-aminobutyrate--2-oxoglutarate-transaminase	unknown	unknown	gnl\|CDD\|236032
NZ_CP023141.1\|WP_157737171.1\|2209320_2209812_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023141.1\|WP_167385316.1\|2210341_2210722_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023141.1\|WP_010633351.1\|2225130_2226285_-\|sodium-dependent-phosphate-pump	unknown	unknown	gnl\|CDD\|162157
NZ_CP023141.1\|WP_017765716.1\|2228350_2228500_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023141.1\|WP_095592319.1\|2217358_2218291_-\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|226229
NZ_CP023141.1\|WP_065016932.1\|2226533_2226914_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023141.1\|WP_065016933.1\|2227007_2228351_-\|APC-family-permease	unknown	unknown	gnl\|CDD\|223605
NZ_CP023141.1\|WP_005303048.1\|2228856_2230200_-\|APC-family-permease	unknown	unknown	gnl\|CDD\|223605
NZ_CP023141.1\|WP_095592317.1\|2211762_2212926_+\|MFS-transporter-TsgA	unknown	unknown	gnl\|CDD\|235151
NZ_CP023141.1\|WP_095592320.1\|2218302_2223186_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|236848
NZ_CP023141.1\|WP_017765712.1\|2233769_2234384_+\|HTH-type-transcriptional-regulator-PuuR	unknown	unknown	gnl\|CDD\|182158
NZ_CP023141.1\|WP_095592314.1\|2207583_2209164_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562

Protein	Function_ID	Function_description	E-value
NZ_CP023141.1\|WP_095592324.1\|2234435_2235713_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	4.60979e-76
NZ_CP023141.1\|WP_095592318.1\|2213917_2217172_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|182169	PRK09959, PRK09959, acid-sensing system histidine kinase EvgS.	6.23625e-94
NZ_CP023141.1\|WP_095592323.1\|2231995_2233459_-\|NAD-dependent-succinate-semialdehyde-dehydrogenase	gnl\|CDD\|143421	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like. Succinate-semialdehyde dehydrogenase, mitochondrial (SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent oxidation of succinate semialdehyde (SSA) to succinate. This group includes the human aldehyde dehydrogenase family 5 member A1 (ALDH5A1) which is a mitochondrial homotetramer that converts SSA to succinate in the last step of 4-aminobutyric acid (GABA) catabolism. This CD also includes the Arabidopsis SSADH gene product ALDH5F1. Mutations in this gene result in the accumulation of H2O2, suggesting a role in plant defense against the environmental stress of elevated reactive oxygen species.	0
NZ_CP023141.1\|WP_043159657.1\|2213052_2213730_-\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	5.80762e-18
NZ_CP023141.1\|WP_095592321.1\|2223422_2224190_-\|dioxygenase	gnl\|CDD\|153375	cd07363, 45_DOPA_Dioxygenase, The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine. This subfamily is composed of plant 4,5-DOPA Dioxygenase, the uncharacterized Escherichia coli protein Jw3007, and similar proteins. 4,5-DOPA Dioxygenase catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine (4,5-DOPA). The reaction results in the opening of the cyclic ring between carbons 4 and 5 and producing an unstable seco-DOPA that rearranges to betalamic acid. 4,5-DOPA Dioxygenase is a key enzyme in the biosynthetic pathway of the plant pigment betalain. Homologs of DODA are present not only in betalain-producing plants but also in bacteria and archaea. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon.	2.31259e-99
NZ_CP023141.1\|WP_095592316.1\|2211007_2211709_+\|purine-nucleoside-phosphorylase	gnl\|CDD\|237368	PRK13374, PRK13374, DeoD-type purine-nucleoside phosphorylase.	5.33797e-163
NZ_CP023141.1\|WP_010633351.1\|2225130_2226285_-\|sodium-dependent-phosphate-pump	gnl\|CDD\|162157	TIGR01013, Sodium-dependent_phosphate_transport_protein, Phosphate:Na+ Symporter (PNaS) Family. [Transport and binding proteins, Cations and iron carrying compounds].	4.72144e-39
NZ_CP023141.1\|WP_005303036.1\|2235790_2236291_-\|SRPBCC-domain-containing-protein	gnl\|CDD\|176856	cd07814, SRPBCC_CalC_Aha1-like, Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity, and may regulate the dwell time of Hsp90 with client proteins. Aha1 can act as either a positive or negative regulator of chaperone-dependent activation, depending on the client protein, but the mechanisms by which these opposing functions are achieved are unclear. Aha1 is upregulated in a number of tumor lines co-incident with the activation of several signaling kinases.	2.3911e-21
NZ_CP023141.1\|WP_095592319.1\|2217358_2218291_-\|diguanylate-cyclase	gnl\|CDD\|226229	COG3706, PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms].	1.37946e-93
NZ_CP023141.1\|WP_095592322.1\|2230557_2231847_-\|4-aminobutyrate--2-oxoglutarate-transaminase	gnl\|CDD\|236032	PRK07495, PRK07495, 4-aminobutyrate--2-oxoglutarate transaminase.	0
NZ_CP023141.1\|WP_065016933.1\|2227007_2228351_-\|APC-family-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	4.40119e-41
NZ_CP023141.1\|WP_005303048.1\|2228856_2230200_-\|APC-family-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	5.48648e-43
NZ_CP023141.1\|WP_095592317.1\|2211762_2212926_+\|MFS-transporter-TsgA	gnl\|CDD\|235151	PRK03699, PRK03699, putative transporter; Provisional.	2.93206e-162
NZ_CP023141.1\|WP_095592320.1\|2218302_2223186_-\|PAS-domain-S-box-protein	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	8.86161e-111
NZ_CP023141.1\|WP_017765712.1\|2233769_2234384_+\|HTH-type-transcriptional-regulator-PuuR	gnl\|CDD\|182158	PRK09943, PRK09943, HTH-type transcriptional regulator PuuR.	2.46324e-115
NZ_CP023141.1\|WP_095592314.1\|2207583_2209164_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	2.65555e-86

>NZ_CP023141.1|WP_095592321.1|2223422_2224190_-|dioxygenase
MSIAPVWFISHGAPDLVLRDQPATHFLKSLRLGALKGLVVISAHWFTRSELQINVEPNPALMYDFYGFPEPLYHIRWPASSPLWLQEAVSDQLLLAGLPAEPVRRELDHGVWSPLSLMDPASSVPLVQLSIPASFTPRQLWQLGEALQQLRAQGIGILASGAITHNLRALGPENSPVPGWARSFVDWLELTMAEGDRAALEDYRARAPGAVESHPHDDHLRPLFVALGAAGQDKPVKLHDSWDGGSLYMGSYRFA
>NZ_CP023141.1|WP_095592320.1|2218302_2223186_-|PAS-domain-S-box-protein
MRNHHPFLGLNRSAGLVLLIGLLLSLLGTLFLHYSNDKQVQASITAATEHVADTVKARLDLYQYGLRGVRGAILTAGEHAFDNEDFVRYSLTRDVDSEFPGARGFGFIRRVKDAELDDFIQRARRDGRPGFTLQLLSPYRGEHFIIQFIEPLSRNKAAIGLDIASEPSRREAALAAIRSGEVRLTPPITLVQATGKPRQSFLMLMPIYRTVTTPATPEEREAAGFGWSYTPLLMEELLDALHLESPAFHIRLIDVTDPRHIQPFYTSAIDHESRNPHHITMSRAAEREIHGRRWQIRLDAHPLFVAQLNQTSPYVVLFTGGLFTLLLTLLARMRAQGQQQRLQLIEEQARLAAIVAGASDGIIAKTLNGVIVSWNKGAEDLFGYPAGEALTRTDSALFQTDHDSASEKALLADLRQGVRIPSFSARRRHRDGHLLDLSISIAPIYDHQGKLVGTSETIRDITAQKQAEAKILELNANLEHQVAERTAELSKINVLLSNVLRSASAISIIAADLEGTITLFNEGAEQLLGYSAADVVGKETPGIFHTRDEMQARGVELSAQYGEEISGFQVFVYKPEREGAESREWTYVRKDGSRFPVTLVITAIRDEQGISRGYLGIGLDITDSKAAEKKLAESLEITRAILDTAVNPIMTMDPDGRIHSLNPAGQTAFGYQAGEIQGRQVQTLLQSSDEHALGEAPLGALSDSQLAALMEREFIGRRRDGSEFPLQMSIGRMQAAGSSMFVCIMTDMTQQLAQRNEILSTRDQLQMAADVAELGIWSWELGSNALSWNNRMFELYDLPLTLREEGLNYQHWANRVHPDDLAATTASLNRAVAGTGIYDPVFRVMQDNGDHRVIQAGAKVERDSSGQALRVIGFNRDITAQTELESRLLYAKEQADAASQTKSSFLANMSHEIRTPLNAVLGMLQLIQYTELTARQLDYVVKAHSAANSLLGLLNDILDYSKIEASKLQLDLHPFDIELLMRDLAIVLDGNQRQKEIEVMFDIDPHLPNLLIGDSMRLQQVLTNLAGNALKFTIKGQVVITMVLLARHEQTVTIRVAVTDSGIGISAHQLERIFESFTQAEASTTRRFGGSGLGLVICKRLLKLMGAELRVESEPGRGSRFWFDITLAQAAPQSLKEACPDLAPPPYILVVDDSELAAELLQRTLLQLGWQAELVHSGAEAVRRVGEARALGRPFDIVLMDWSMPGMDGLNAAAQIRQQAGQDPAPGVIMVTAYGHEVFTEAHQSGATPFVSLLTKPVTPKQLAEAIYQALHGQDVAPALPAQHTRRLSGLTLLVVEDNLLNRQVACELLSCEGARVLLAECGRDGVAMVLQQAPSFDAVLIDMQMPDIDGLEATRQIRAHPQFANLPIIAMTANASEADRQLCLAAGMNEHVGKPIALEQLVSTLLAQLGKAGQPALAQPPSPAASEALLEAESVIRQRFDNDIELLQRILGLFGPDMAEQLEALHQAIAAGQVTEACRILHAIKGSASTMGACRLATLAKAQEQALLHADQSQAAALLADAGWLQLLQETVRLSLESLDKTFAPPPDTTAPPADDALSLAEWREAMQRILTLLEDGNLAAVELTEALAPKTPPQLHAAFHQFAGLIENLEFDAALKLGKSLCVNQ
>NZ_CP023141.1|WP_095592319.1|2217358_2218291_-|diguanylate-cyclase
MVPWNLPTNRRPKLLIVDDQAINIRLLHQLFREECEIFMATSGEQALALCRSLLPDLVLLDVIMDGMSGHEVCQQLKADPDTRDIPVIFVTAQQEETDEEYGLALGAVDFISKPISPNIVRARVKTHITLKLQGDLLRNLAMLDGLTGIPNRRQFDDELTRQWRQGCRDNTPLSLIMLDVDYFKRYNDRYGHQAGDHCLQAIAAVLAERLGRPHDLVARYGGEEFACVLPNTPLASAVHLADSMCNAVRELAIEHLASEVARVVTISLGVVCAIPSQTGTPQQLLEAADRQLYRAKEAGRARVAADGEGG
>NZ_CP023141.1|WP_095592318.1|2213917_2217172_-|transporter-substrate-binding-domain-containing-protein
MNLIRPLLLLCLLLPLCAQALTLHSRPYLQSPPAPASTADQPWLAEMTTLRVGVLRHDYRPFAMIGPDDHFEGIAADYLDILARALQKPVKLRAFNDTRSALAALRAGDLDLVNLGNLSLSGPDQAGIALSQRYFSSAPVFSALAAEQGPLLLPGQRVATVRGYVNEAAFKRYYPDLVLVNYPSNVAAFDAVFFGHEPLLLSDPHSLHYLNSERFDKIRQRSQAQPAIAADGFRFAVSADNPRLLALLNHALAGVSDITRSLIFNQWNGPIRDIVERPSDLYSREERAWLASAGPVKVWLMDDLYPYGVRDYDNQLTGMSVEMLEKISKRSGLRFEFVSYGSEQARKEALLKGELDLIGAISRPVAEGYRLRPSLPYATDDIYVLVARKGDALSGDLAQLAGKRVGSTIYNPIARGLADSQVSFLESADEAMAAVNEGRLDAAIVPLYFAQHAVEGGRLQQIRIAGPADDQPIRMGFAGLPANRMLMDIIDKTILSIAPNELAMMSYQWRNRKLPAPTFMERNAPYFYLLLAGLCAVALLLFYRNRMLNRLARSEQASRRQLEEHVRFIEALGESLPHPIVVRDKGGKVILCNSKYLATLNAPIERVLGTSFAEGLKGLLGAEAIAALEQDFQQVLRSGSPILSDRIFSQRGPRQFVYHWMVPYFDYRGAISGVINGWIDITERKTMEEALRRAKEQADRASRAKSDFLATMSHEIRTPMNAILGMLELASQDPALARHTGEQLRIASESANGLLDLIGDVLDISSIEAGQLTLAPEPCELAPLLHSVARACKGMAQQKGLGYRVELPPLPRVLIDPLRLRQIVFNLLGNAIKFTERGEVSLQASLTGSTEQPLLHLIIRDSGVGIAPDKLPRLFSPFYRAHDPYQFAGTGLGLNIARMLCQLMGGKIAVSSELGSGTELRIRLPLTPLAAPHEPLGAASPPAGPLLVPSPRPVAPTRLRVLVVDDNHANQVLLRQQLKHLGHEVCVRGNGAEALQASQSQPFDLVITDCQMPLMDGFELTRRLRARGHTLPIWGFTAHATARERELCLAAGMDDCLYKPIGLARLRTALASLEQTNAGALSPV
>NZ_CP023141.1|WP_043159657.1|2213052_2213730_-|Crp/Fnr-family-transcriptional-regulator
MQLKPLLKGRFQPHWQAGHDLIEQVVSSCITERRLIPEGEPLMRQGEPLRDLVLVKSGRIAMGHTAMNGRRFQLGTLECDHQLFGEMEFFTGYRCQLDIIAEEPLEVARIDGEQLEQALVAHPKVALFFATAIAIDYQDTVDIFTCRMLYPISYNIALDLYHSHCHHNPVSGFRKGYQEAERFGTTDRVYRRAVKELMDKGWVERGEEGLQIRDLAGLKAFLEQP
>NZ_CP023141.1|WP_095592317.1|2211762_2212926_+|MFS-transporter-TsgA
MNNKLSLTAISFLANFVMAGFATQFGMLIDPIAAKFGADVNQVASIFSLLNGGALAGTIAAFFLIEKVGLKRMTLICYGLIALAAAALHLTGSLYVVMAAMTVIGLCGGVGLCIAGTLVVSVWQARMQSTMLVVQDATFNVAGVVFPLVTTYTLTHAMAWSWSYLAVGVVALATMLVAVLTNFRSCEAGGESAGNEHSEWNLGIISGGLGLFLGMLALYTFLTWAPMFVKNKFGIPFEEAGNIITQYWTAALLGALVSTAIVTRIAIRTFLLVIITLAMGMTALIVTTDNLSQLPYLTYGYGFVCAALYNAFIAYGVSFVRQASSKNVSYILISGSAGAMFSPAISAMFEQVIGLQAVMYAIPLIYGVILAMLVASLRMARPQPCLA
>NZ_CP023141.1|WP_095592316.1|2211007_2211709_+|purine-nucleoside-phosphorylase
MTAHINANPGDFAETVIMPGDPLRARYIAETFLTDAREVTNVRNMLGYTGYYNGQRISVMGHGMGIPSMVLYAHELVNDFGVKRIIRIGSLGATQHHVQMRDVILAQAAGTDSPTNAKRSAGYQMATSADFALLHKAFTKAQEKGIPVKVGNIFTGDLYYDPDENLIPALEKFGVLGIDMEVAGLYGLAHQQGIEALAILTVSDHCLTGEETTAEERQLSFNQMIELALHTAL
>NZ_CP023141.1|WP_167385316.1|2210341_2210722_+|hypothetical-protein
MKRIAILFGLLCGSVLLANPVFANDAAQLQCEAQAAAKKLAGAAKTSFVGKCVKDAAGAVSGECEKAAADKKLAGAAKNSFIQKCVKTGAAMDPAARCEKAAADKKLAGAAKNSFVQKCVKDSAAK
>NZ_CP023141.1|WP_157737171.1|2209320_2209812_-|hypothetical-protein
MKKIIYVIFLLTPILSHADWHLAYKSDIQGNVTHGNICSLLNYVKNGYDVKVVVDGENQQTNTSWHVSITPTAVAYKENYVYARVASQTSEYYNKDGVIDFVPTNNINDLYRAESMVDNLGRLITITYSLNGDRLTHNKTVTQVATKWFVDTASPILVNAACQ
>NZ_CP023141.1|WP_095592314.1|2207583_2209164_+|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MTHIACHINALQLPFGACTAPLTFTLPAAGCTLIGRNGIGKSLLLELLTGQRRAASGKIEWLTPINWLSQFAPAQDYADGASVADVIGWGEPLRALERIEQGSCALDDFELLADRWNLRSDLADLLAEAGLRLDAHAPVSTLSGGQLTRLRLLALFARSAHFLLLDEPDNHLDASGIAWLSQRLASHSGGYLLVSHDRRLLNQGSQILELGEQGLQSASLSFEAFLAQQAELQAAHSARLAQAERREKAAARSVQKVREQAARRASQGRRERGSQARILLDFKAEQAGKSLGKMLDRHERGHSAQVEARAEAAAALAAVQPLVMQWPAKSDRKGAAQPLVITAARHRRWHDQQVDLVLQRGARCLLAGRNGSGKSSLLQMLRSELAPEAGSFRINGRMACLDQGLSLIALDLSPLANLLAAAPTLSESEARTRLAGIALRGARALAPSHGLSGGERLKLGLLMVLAQLPDLLLLDEPDNHLDHPSRQLLIQVLADYPGTLLLVSHDPEFVAGVGIEREYCLEGEEG
>NZ_CP023141.1|WP_010633351.1|2225130_2226285_-|sodium-dependent-phosphate-pump
MHSTPSFAQQQTRRTGPLFNWLAVITLIYLILVAVGAVSHGFKGFSGGAEGAAQIFAFANNPFVALLLGILATALVQSSSTVTSVIVGLVAGGLPIGMAIPMVMGANLGTTITNTIVSLGHIRDRGEFRRAFAAATVHDFFNLLAVFIFLPLELMFGLLQKSAEALATLLVGSADMSMKGMDFMKPLISPALNFIDDLVAFLPGKGPAIATIVIGILLILGCVTWLGKVLQRVLVGRAKEVLHKALGRGPLTGIASGTLVTVMVQSSSTTTSLMIPLAGGGVFSTRQLYPFTLGANIGTTITALLAATAISGAGAKLALTIALVHVLFNLFAVVLIYGVPFLRELPVKAAEGLARVGSENKLLALGYVAGLFFALPALMMVAAK
>NZ_CP023141.1|WP_065016932.1|2226533_2226914_+|hypothetical-protein
MRAWVLCLSLGLLSVGAQASVLKSECNLDKAMKNEALNATLGVKGRCDTDKLVRQQKEKAGAEVKKHTTDVLEQKSAGLKEGKSQLQGTQQKVNQAGQQLKQTQQDVKAVAKDPLKAAATAVINQG
>NZ_CP023141.1|WP_065016933.1|2227007_2228351_-|APC-family-permease
MAGAKLLKTLTLFQVVVMGLAYLTPMAVFDTFAIVGDITEGRVATAYLLALGGILLTAISYGHLVRKFPSAGSAYTYAQKVFNPYIGFMVGWSSLLDYMFMPMINILLAKIYLTAMFPGVEPWIFIFGLVTVMTFLNLRGINLVANFNGVIVFIQLAIITVFLGLMGWGIYQGEGAATLLSSRPFHFESASMVPLFTGATILCFSFLGFDGLSSLSEETPNAGKVIPRAIVLTALIGGIIFVTVSYFLQLYFPDLARFKEPDAVLPEIALYVGGTLFQSVVLVCTTVAVLASGMAAHAGVSRILYVMGRDRMIPERVFGYIHPKYRTPAINVLMVGALALSAVSFDLDMALALVNFGALVAFTFVNLSVIGQFWVREKRNKSLKEHLLFLLLPLLGAATIGALWINLEQSSLELGLIWAGLGVTYLFLRLAVFRIPFRQYEEAADSQ
>NZ_CP023141.1|WP_017765716.1|2228350_2228500_-|hypothetical-protein
MGHFIAFLPVPAGVRHLSVPQTGAPCVQRRAASLIPSPFAALAITEEKA
>NZ_CP023141.1|WP_005303048.1|2228856_2230200_-|APC-family-permease
MNAQPVGLKKSLKLWHVVIMGLAYLTPMAVFDTFGIVTEITEGHVPTAYLFALIGMLFTAMSYGHLVRKFPSAGSAYTYAQKVFHPYVGFMVGWVSLLDYMFMPMINMLLAKIYMEALFPSVEPWTYILGLAAVMTFLNLRGIKLVANFNSLIVIMQFSIIAVFIGLIAWGVYHGEGLGTVASSRPFFSDQMAVAPLLTGASILCLSFLGFDAITTLSEETPNADRVIPRAIVLTALIGGVLFISVSYFLQLFFPDISRFQQPDAVLPEIALYVGGKLFQAVVLVCTTVAVLASGLASHAGVSRLLYVMGRDRALPSRFFAYIHPTWQTPALNVLLVGILALSAVSFDLEMALALINFGALVAFTFVNLAVIAHFYVKLGHNKTLRDHLIFLLLPLCGAACIGVLWLNLEPASFELGLIWAALGALYLLLRLTVFRVQLRRPETDAS
>NZ_CP023141.1|WP_095592322.1|2230557_2231847_-|4-aminobutyrate--2-oxoglutarate-transaminase
MSQSASNKAWQARREAAVVNGVGTLLPVFIDRAQNAELWDVEGNRYIDFASGIAVLNTGHNHPRVVAAVRAQLEKFSHTCFQVTPYPGYIELAEKLNALVPGPTPKRTLFLSTGAEAVENAIKIARAHTGRSGTIAFKGGFHGRTMMGMALTGKVVPYKTGFGPFPGEVYHLPFPSDYLGVSEADALAALDLCFSSDIEPTRVAAIIIEPVQGEGGFYPASASFMQRLRQLCDQHGILLICDEIQSGFCRTGKTFATEYSGIEPDIMTLAKSLAGGFPLSAVVGKAEVMNAAKPGGLGGTYAGSPIACAAALAVLEVIEEERLNQQAQAQGEQIKARLQQLAERFDCIGDIRGPGAMVAMELVKQRYANQPDADLTKRLVAEAGKRGLVLLACGVRANVIRFLAPLTASPAIIEEGLTLLEQALQAAHA
>NZ_CP023141.1|WP_095592323.1|2231995_2233459_-|NAD-dependent-succinate-semialdehyde-dehydrogenase
MSASQPALSLIKSLAYIDGRWCEASGGRRFEVHNPATGQVITQVPDMDEGDTRRAIAAAHAAQPGWAALTAKERSNRLYAWFELIMANQEELARIMTCEQGKPLAEAKGEVAYGASFIQWFAEEGKRAYGRTIPGFSSDRRLATIKQPVGVVAAITPWNFPIAMITRKAGPALAAGCTIVIKPAAETPLCALALAALAEQAGIPAGVINIVTSHQAAAVGNELCNNKTVRKLSFTGSTRIGKLLMRQCADTMKKLSLELGGNAPFIVFDDADLDAAIAGALASKYRNAGQTCVCANRILVQAGIYDAFAEKLTAAVKAFKVGDGMSEGTQIGPLINPAAASKVAELVKQATAAGAELLLGGEAHPAGPLFYQPTILGKVDKTNPILQEEIFGPVAPLVRFETEAEAIALANDTPYGLAAYFYGRDIARVWRVAEQLEYGMVGINEGIISTELAPFGGIKESGLGREGAAEGLEEYLETKYLCFGGIR
>NZ_CP023141.1|WP_017765712.1|2233769_2234384_+|HTH-type-transcriptional-regulator-PuuR
MQQPQGETRWQSMTDNPLAQSTQAQSMGERLAATRRRLGLSQRRVAELSGLTHGAICMIEQDKVSPSVASLQKLLSVYELPLSRFFAEEEVASTPSVVIRAEQLIELGSQGVSMKLVHNGNNRRQLGFMLETYAPGTDTGGQVTHLGEEVGTVLEGSVILTVAGQTYQLSAGDSYVIDTGEPHSFSNPSGQVCRIVSAHTPANF
>NZ_CP023141.1|WP_095592324.1|2234435_2235713_+|FAD-binding-oxidoreductase
MTEHVNSYYAASANQHAPYPTLTEQLECDVCVIGAGYTGLSSALHLVEKGYSVVVLEAARVGFGASGRNGGQIVNSYSRDIDTIEANCPPEQARLLGSMLFEGGQIIRERIKRYNIQCDLQEGGVFAAETEKQLHELKAQKARWEKWGNDKLELLDADGVREVVASDRYVGALLDKSGGHIHPLNLALGEAEAIRLQGGKIFEQSAVTSITPGQPALVKTAKGAVKARYVVVAGNAYLGNLVPELAGKSMPCGTQVIATEVLGEERARSLLPQNYCLEDCNYLLDYYRTSGDHRLIYGGGVVYGARDPADIERLIIPKMLKTFPQLADVKVEFTWTGNFLLTLSRLPQFGRIGHNIYYMQGYSGHGVTCTHLAGKLLSEVLSGQAERFDAFAKLPHYPFPGGRLFRIPFTAAGAAWYTLRDRLGV
>NZ_CP023141.1|WP_005303036.1|2235790_2236291_-|SRPBCC-domain-containing-protein
MDNKQIEGNIFVPAHIDDVWRAWTTESGLRSFLAPECLMVPEPNGPFEIYFRPDAPLGERGSEGCRVMAVMPHDLLSFSWNFPPSLPHIRQQKTQVCLRFVPEGQGTRLYFLQTGWANDPDWDQGYAYFRDEWLETSLPRLQYRFTHGPIDWNNPPDKQQLKSLAQ

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Crispr_ID: NZ_CP023141_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023141_4

2455714-2455925

Orphan

Consensus_repeat	Method
GATGAGCAAGATGAGCATCAACAAACAGATTACCGGTCAGTTCAACGACTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP023141_4

>merge|NZ_CP023141|4|2455714-2455925|CRISPRCasFinder
GATGAGCAAGATGAGCATCAACAAACAGATTACCGGTCAGTTCAACGACTAGGGCGTGTTGGTGCAACAAGGGTTATGGGGATGAGCAAGATGAGCATCAACAAACAGATTACCCGTCAGTTCAACGACTAAGGCATACTCGGAGCATCAAGGATTATTGGTATGGACAATATGAACCTCAACAAACACATCTCCGGTCAGTTCAATGCCGA

>NZ_CP023141|4|4|2455714-2455925|CRISPRCasFinder
GATGAGCAAGATGAGCATCAACAAACAGATTACCGGTCAGTTCAACGACTA	GGGCGTGTTGGTGCAACAAGGGTTATGGGGATGAGCAAGATGAGCATCAACAAACAGATTACCCGTCAGTTCAACGACTAAGGCATACTCGGAGCATCAAGGATTATTGG
TATGGACAATATGAACCTCAACAAACACATCTCCGGTCAGTTCAATGCCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023141.1\|WP_017783968.1\|2450037_2450577_+\|tRNA-adenosine(34)-deaminase-TadA	unknown	unknown	gnl\|CDD\|182786
NZ_CP023141.1\|WP_167385328.1\|2458117_2458660_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023141.1\|WP_167385330.1\|2465658_2466447_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270347
NZ_CP023141.1\|WP_042051994.1\|2446952_2448560_-\|malate-synthase-A	unknown	unknown	gnl\|CDD\|236432
NZ_CP023141.1\|WP_005302745.1\|2442745_2443372_+\|uracil-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234653
NZ_CP023141.1\|WP_174704178.1\|2444709_2445453_+\|DnaA-inactivator-Hda	unknown	unknown	gnl\|CDD\|181224
NZ_CP023141.1\|WP_095592420.1\|2463881_2464625_-\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP023141.1\|WP_041203158.1\|2464608_2465568_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP023141.1\|WP_095592419.1\|2462376_2463144_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|366132
NZ_CP023141.1\|WP_010633493.1\|2466923_2468252_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|183266
NZ_CP023141.1\|WP_017778548.1\|2453053_2454703_+\|phosphate-ABC-transporter-permease-PstA	unknown	unknown	gnl\|CDD\|227318
NZ_CP023141.1\|WP_017786247.1\|2456778_2458095_+\|HlyC/CorC-family-transporter	unknown	unknown	gnl\|CDD\|224173
NZ_CP023141.1\|WP_167385329.1\|2461307_2462147_-\|sterol-desaturase-family-protein	unknown	unknown	gnl\|CDD\|225546
NZ_CP023141.1\|WP_164465069.1\|2449277_2449424_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023141.1\|WP_095592417.1\|2459841_2461242_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|129983
NZ_CP023141.1\|WP_005302736.1\|2454877_2455696_+\|phosphate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|184582
NZ_CP023141.1\|WP_095592416.1\|2458929_2459832_+\|homocysteine-S-methyltransferase-family-protein	unknown	unknown	gnl\|CDD\|376828
NZ_CP023141.1\|WP_005302742.1\|2445565_2446879_-\|isocitrate-lyase	unknown	unknown	gnl\|CDD\|237893
NZ_CP023141.1\|WP_095592415.1\|2450783_2453021_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226956
NZ_CP023141.1\|WP_095592412.1\|2443516_2444536_+\|DUF2066-domain-containing-protein	unknown	unknown	gnl\|CDD\|378267

Protein	Function_ID	Function_description	E-value
NZ_CP023141.1\|WP_017783968.1\|2450037_2450577_+\|tRNA-adenosine(34)-deaminase-TadA	gnl\|CDD\|182786	PRK10860, PRK10860, tRNA-specific adenosine deaminase; Provisional.	2.43691e-87
NZ_CP023141.1\|WP_167385330.1\|2465658_2466447_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270347	cd13629, PBP2_Dsm1740, Amino acid-binding domain of the type 2 periplasmic binding fold superfamily. This subfamily includes the periplasmic binding protein type II (BPBII). This domain is found in solute binding proteins that serve as initial receptors in the ABC transport, signal transduction and channel gating. The PBPII proteins share the same architecture as periplasmic binding proteins type I (PBPI), but have a different topology. They are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBPII proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the family includes ionotropic glutamate receptors and unorthodox sensor proteins involved in signal transduction.	1.14147e-130
NZ_CP023141.1\|WP_042051994.1\|2446952_2448560_-\|malate-synthase-A	gnl\|CDD\|236432	PRK09255, PRK09255, malate synthase; Validated.	0
NZ_CP023141.1\|WP_005302745.1\|2442745_2443372_+\|uracil-phosphoribosyltransferase	gnl\|CDD\|234653	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed.	3.08223e-134
NZ_CP023141.1\|WP_174704178.1\|2444709_2445453_+\|DnaA-inactivator-Hda	gnl\|CDD\|181224	PRK08084, PRK08084, DnaA inactivator Hda.	5.91863e-112
NZ_CP023141.1\|WP_095592420.1\|2463881_2464625_-\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	3.17801e-153
NZ_CP023141.1\|WP_041203158.1\|2464608_2465568_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	1.04753e-89
NZ_CP023141.1\|WP_095592419.1\|2462376_2463144_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|366132	pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3.	3.76342e-12
NZ_CP023141.1\|WP_010633493.1\|2466923_2468252_-\|MFS-transporter	gnl\|CDD\|183266	PRK11663, PRK11663, glucose-6-phosphate receptor/MFS transporter UhpC.	0
NZ_CP023141.1\|WP_017778548.1\|2453053_2454703_+\|phosphate-ABC-transporter-permease-PstA	gnl\|CDD\|227318	COG4985, COG4985, ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism].	1.29592e-94
NZ_CP023141.1\|WP_017786247.1\|2456778_2458095_+\|HlyC/CorC-family-transporter	gnl\|CDD\|224173	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only].	2.02316e-133
NZ_CP023141.1\|WP_095592417.1\|2459841_2461242_+\|amino-acid-permease	gnl\|CDD\|129983	TIGR00905, Arginine/ornithine_antiporter, transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions. [Transport and binding proteins, Amino acids, peptides and amines].	7.30282e-159
NZ_CP023141.1\|WP_167385329.1\|2461307_2462147_-\|sterol-desaturase-family-protein	gnl\|CDD\|225546	COG3000, ERG3, Sterol desaturase [Lipid metabolism].	4.40618e-38
NZ_CP023141.1\|WP_005302736.1\|2454877_2455696_+\|phosphate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|184582	PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional.	0
NZ_CP023141.1\|WP_095592412.1\|2443516_2444536_+\|DUF2066-domain-containing-protein	gnl\|CDD\|378267	pfam09839, DUF2066, Uncharacterized protein conserved in bacteria (DUF2066). This domain, found in various prokaryotic proteins, has no known function.	4.18513e-67
NZ_CP023141.1\|WP_005302742.1\|2445565_2446879_-\|isocitrate-lyase	gnl\|CDD\|237893	PRK15063, PRK15063, isocitrate lyase; Provisional.	0
NZ_CP023141.1\|WP_095592415.1\|2450783_2453021_+\|ABC-transporter-permease-subunit	gnl\|CDD\|226956	COG4590, COG4590, ABC-type uncharacterized transport system, permease component [General function prediction only].	0
NZ_CP023141.1\|WP_095592416.1\|2458929_2459832_+\|homocysteine-S-methyltransferase-family-protein	gnl\|CDD\|376828	pfam02574, S-methyl_trans, Homocysteine S-methyltransferase. This is a family of related homocysteine S-methyltransferases enzymes: 5-methyltetrahydrofolate--homocysteine S-methyltransferases also known EC:2.1.1.13; Betaine--homocysteine S-methyltransferase (vitamin B12 dependent), EC:2.1.1.5; and Homocysteine S-methyltransferase, EC:2.1.1.10,.	1.6923e-75

>NZ_CP023141.1|WP_005302736.1|2454877_2455696_+|phosphate-ABC-transporter-ATP-binding-protein
MINVTTAATQHTATDLLNLSPEQTALEVKDLNLYYGNKQALFNVNMKIPKGQVTAFIGPSGCGKSTLLRCINRMNDLVEICRIEGEIQLHGHNIYDKSVDVSALRRQVGMVFQRPNPFPKSIYENVVYGLRLQGINDRRTLDEAAERSLRGAALWDEVKDRLHDNAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLTIEELINELKSQFTVVIVTHNMQQAARVSDQTAFMYMGELIEYSDTNTIFTTPAKKKTEDYITGRYG
>NZ_CP023141.1|WP_017778548.1|2453053_2454703_+|phosphate-ABC-transporter-permease-PstA
MGKWFKSGAPWIWMTGGAVSLSLVAVLGLLLLIGWRGLVYFWPHPIYEWQLEDAQGNKSVLIGEINDRELVPVERLRAAGLPLAGEERELLTRYLVKTGNREFVDLDFRWVLETDIKSQSLPAELAMVERATNGNFYGYIVAVKEDGRELTSDLHPALQRVLARANGLSSQADDLQKGDIGSINYQLERLRLKERKAELDDKLTDQLKAELASERQALNDRYQVLEKELFSLRAQADRDSITVKDMRGELVTMPMSKVLDVVWPNDMSLPAKVGYWFHQIGKFVSDDPREANTEGGVFPAIFGTVFMVFLMAIIVTPLGVIAAVYLHEYAGKNSLTKIIRIAVINLAGVPSIVYGVFGLGFFVYTLGGSLDQLFYPEALPSPTFGSPGVIWSALTLAILTLPVVIVSTEEGLARIPSTIRQGSLALGATQAETLWRIVLPMASPAIMTGLILAIARAAGEVAPLMLVGVVKLAPTLPMDGNFPYLHVERKFMHLGFHIYDVGFQSPNVEAARPLVYATSFLLVTVIVGLNLTAIGIRNHLREKFRSLEH
>NZ_CP023141.1|WP_095592415.1|2450783_2453021_+|ABC-transporter-permease-subunit
MSSESLHLVMAGSRKRRIKDKLAKYGVTTGGALVLVALLLIFFYLLYVVKPIFNGASMEPTASFTLPIQGKTAWLGVEEQNEIGYRFSDQGQVNFFAVQNDGKVKVGQSLGQAQVKGDITAVAPPSPGQKLMAYGFADGKAQVVQPAFKVSYPNDVRVIEPSLQYPFGEEPVVVDPAGKALSLMVFEATKDKMATAAVTADGRGVMMVMSGEENFLSGEVEWSAQNYTIPSLPRHVDQMLLTPNLRILFVRDGNRLSVYDIHNLNDISLRNVLEINAPDANVTRVELLSGASSLLVGNDNGVISQWFEVARDGKRQFTQIRDFKGDGAVAQLTPEHFRKGFISADKSGSISFFHATGETKLLSEKVEGGALSALAISPRHNVLLMQQGDAFKLFAVENEHPEVTWSALWQQVWYEGYPEPQYVWQSTSASNDFEAKLSLVPLVFGTLKASFYAMVFAVPLGVAGAIYTAYFMSAGLRKYVKPTVEIMAALPTVILGFLAGLWLAPIIEGALPGVVLLLILLPMGMLLTALIWNYLPERGKSWLPEGWHAILLIPVLLLIGWGAFAVSPLIENAFMHGDSRIWLTHDMGIKFDQRNSLVVGIAMGFAVIPTIFSIAEDAVFSVPKHLTQGSLALGATPWQTLSRVVILTASPGIFSAVMMGLGRAVGETMIVLMATGNTPIMDFSMFQGLRTLAANIAVEMPESEVGSSHYRVLFLAAFVLFVFTFLFNTLAEFIRQRLREKYSSL
>NZ_CP023141.1|WP_017783968.1|2450037_2450577_+|tRNA-adenosine(34)-deaminase-TadA
MKPSDVAAQASQHEQDERWMRHAMALAARAEGIGEIPVGAVLVLGEEIVAEGWNRSISEHDACAHAEVMALRAAGERLQNYRLLDTTLYVTLEPCCMCAGALIHSRVKRVVYGARDLKTGAAGSVFEILQDPRHNHRVELTGGVLAEACSAQLSDFFRRRRAEKKAARLALQQTPAADD
>NZ_CP023141.1|WP_164465069.1|2449277_2449424_-|hypothetical-protein
MTQAVETQPEHSPLPQPATETGANQYVAEHGPIVRLDIVDLAAPDDDY
>NZ_CP023141.1|WP_042051994.1|2446952_2448560_-|malate-synthase-A
MSAPAQTHCSARLRIQGEMHPDYAQILTPDAVALVSELVERFAPQRDELLKQRVARQARIDGGELPDFLPETAHIRASDWTVRGIPADLQDRRVEITGPVERKMVINALNANVKVFMADFEDSLAPAWNKVIEGQINLRDAVNGTIAYQSPEGKSYTLNADPAVLICRVRGLHLPEKHVTFDGAPIPGGLFDFALYFLHNHKALLAKGSGPYFYVPKLQSHLEGRWWSEVFAWTEDKFGLPRGTIKATVLIETLPAVFEMDELLYQMKDHIVALNCGRWDYIFSYIKTLKNHPDRVLPDRQVVTMDKPFLSAYSRLLIKTCHKRGALAMGGMAAFIPAKDAAVNEQVFAKVHADKQREADNGHDGTWVAHPGLADTAMAVFNATIPAGAKNQIGVLREQDAPITAADLLAPCEGERTEAGMRTNIRVALQYLEAWINGNGCVPIYGLMEDAATAEISRTSIWQWIRHGKSLSNGQVVTKDLFRQMLAEEQEVVKREVGEARWQSGRFAEASALMEEITCADTLIDFLTLPGYERL
>NZ_CP023141.1|WP_005302742.1|2445565_2446879_-|isocitrate-lyase
MALTREQQIQAIEKDWAQNPRWKGIKRGYSAEDVVNLRGSLQPQHTLAQRGADKLWELIHGGAKKGYVNCLGALTGGQAVQQAKAGIEAIYLSGWQVAADNNLSSTMYPDQSLYPANSVPSVVERINNSFARADQIQWANKVGPQDEGFIDYFLPIVADAEAGFGGVLNAFELMKGMIEAGAAGVHFEDQLASVKKCGHMGGKVLVPTQEAVQKLVAARLAADVCGTSTLVIARTDANAADLLTTDADPYDADFLTGERTAEGFYKVRAGIDQAIARGLAYAPYADMVWCETAKPDLDEARKFAEAIKAQFPDRILAYNCSPSFNWKKNLDDATIARFQQELSDMGYKYQFITLAGIHNMWFHMYELAYQYARGEGMKHYVEMVQQPEFAAAERGYTFVAHQQEVGTGYFDKVTTVIQGGQSSVTALTGSTEEDQFH
>NZ_CP023141.1|WP_174704178.1|2444709_2445453_+|DnaA-inactivator-Hda
MIHLPANVTVKAQRVKQPAQLSLAVQLPDDETFVSFYPGNNAHLITALKNAAIGQGSPFLYFWGAKGSGRSHLLHATCAEVNARDAAAAYLSLDQFEQLDPSMLDALESLPLVCLDSLEAIAGNSLWERALFDFYNRWKEKGEGTLVVTGCSAPRKLGLQLPDLASRLDWGVSFHLDELDDEGKLSALQLRAELRGFKLPIDVGRFLLNRLSRDMRTLLTTLNQLDNASFRAKRKLTIPFVKEILEL
>NZ_CP023141.1|WP_095592412.1|2443516_2444536_+|DUF2066-domain-containing-protein
MLKRVVTALCCGLSFMVSAAQVTDLYQGKAPTSGDMAAAQSQALGEVLVKVTGKRDILTQPAVVKALAAPGAFVQHYGYQDVGPVKFLKADFDVTKVNALVAESKFALLGPARPQVAIWLVINEGERRILPDQSSDGWAAALRTQAQAMGLPVSIPLMDLDDNMAVNATDVWGRFADPILKASQRYGAEMVVLGKLTPEGDKWSIDWGLYGPKAGGELSELTRGEGAGSQAEVAQTFADALAGWLVQNYGARISGVASSQTLVVEGLSGIDGMITVQKMLQGMASVTKVEIGKLEGDKVTFNLSLQGDKAELIRGLQLESRLRQLADTPEGLSYQWSQP
>NZ_CP023141.1|WP_005302745.1|2442745_2443372_+|uracil-phosphoribosyltransferase
MKVVEVKHPLVKHKIGLMREGDISTKRFRELAKEVGSLLTYEATSDFETEKVTIDGWNGPVEVDQIKGKKVTVVPILRAGLGMMDGVLEHMPSARVSVVGIYRDEETLQPVPYFEKIVSNIEERLALVIDPMLATGGSMIATIDLLKKKGCQSIKVLVLVAAPEGIKALEAAHPDVELFCASIDQGLNEKGYIVPGLGDAGDKIFGTK
>NZ_CP023141.1|WP_017786247.1|2456778_2458095_+|HlyC/CorC-family-transporter
MSFADSLFFLMLLVAGSVFFSLSEISLAASRKIKLQVMADEGNRHAEKVLALQAQPGNFFTVVQIGLNTVAILGGILGESALNPAIKELVSEFYQGPWLSEISSATSFVFVTGMFILIADLMPKRLAMTMPERIAVVVVRPMLLCVTLLMPLVWLFNGMANGLFRLLRISMVRNDEITSDDIYAVMDAGAEAGVIQREEHQLIENVFELQSLGVTSAMTARESLIYFTLQEGEESIKAKIAEHPHNKFLVCDHNLDSIKGFVDSKELLIRVISGQSIDLNSGSLVQNVIIIPDTLNLYEAMEYFKNHRGDFAVVMNEYALVVGIVTMNDLMSTVMGEWATHVVEEQIVQRDENSWLVDGVTPISDVMRAFDIEEFPENQNYETIAGFIMYMLRKIPKRTDSVKYAGYKFEVVDIDSYKIDQLLVTRVEATPADKPAQE
>NZ_CP023141.1|WP_167385328.1|2458117_2458660_+|hypothetical-protein
MKMQSHSRALACVALALALGACSQSAPRKATPVAKPAAPKAAVVMPQPDPDAVVQSAVAEPSPVFDEEYHGPDQGSLESVTALFARGYIESAMRETMLAAVHSDYPLLGMRDVRLTDPVAKFLTSAQARTTAHDYLYAGVQRRLGRPLSPAQWEQIWQGYPQQGRVSDWVRQTKRVLAGR
>NZ_CP023141.1|WP_095592416.1|2458929_2459832_+|homocysteine-S-methyltransferase-family-protein
MDTQALWILDGGMGRELARRGAPFRQPEWSALALMEAPETVREVHRAYAASGAQVITTNSYALVPFHIGEARFAAEGEELAALAGQLAREVADEQPGSVQVAGSLPPLFGSYRADLFDAGRVSELATPLIRALSPRVDFWLAETMSLIAEPLAIQALLPEDGKPFWVSFTLEDEAPGSEPTLRSGERVADAVTALASAGVNAILFNCCQPEVIDAALKVARAGLHALGRTDVRLGAYANAFPPQPKEATANDGLDEIRTDLGPLDYLGWAERWRAAGASLIGGCCGIGPEHIEALASRLR
>NZ_CP023141.1|WP_095592417.1|2459841_2461242_+|amino-acid-permease
MKESKIGLWSLTALVFSSMVGAGIFSLPQNMAEVAGARAVLIGWAITGVGILALAMSFLYLSRLRPELDGGIYSYARAGFGDLVGFFSAWGYWLCATIGVVGYLVIAFAALGSFVDTPERVWFGEGNTLAAFIGESCILWAVHLLVARGVQQAALFNLVATLAKSLPLLLFILFACYWFDPVTFAADQEGSTLATPVSEQVRNTMLITLWVFTGIEGAAVLSARARNRRDVGTATVLGVVLALLLYVLISVLALGILSRPELAALPNPSMAGLMAQMTGSWGKLLISAGLIVSVLASYVSWTLFSAEVPFSAAHHGAFPAIFRRQNRNGTPIASLWLTSLTVQGCLLLVWLLGKGYTNLLLVSTSMILVPYLLIGLFLLKLASSGQGNLLMRAVALVSSSYGFWLLYAAGMEYLLLSLLLYGPGLLLFLYSRRQLRAEQPLSGRERLLAGVTLLSLIPAVWTFAHV
>NZ_CP023141.1|WP_167385329.1|2461307_2462147_-|sterol-desaturase-family-protein
MDVQLLLLYLSPIFVAFIGWEMLYLRKHGAAFPSAGYQWKDLFANATLALMHQGGDALAAIAIAYLYDILWGWRLLDIGLNVWSLLLLFLLQDLCYWLFHFASHHVRWLWASHVVHHSSERLNLSTAFRQSLMYPVSGMWLFWIPMILIGFPPEAVVATVLLSLGFQFFVHTQVVGKLGWLEAIFNTPSHHRVHHASNAKYIDRNFAGVLIIWDRLFGTFVEEDLGEPCRFGITKPIHSFNPLTLTFHEWRDMLQEARGLPWRQKLAVLFGKPAGPASR
>NZ_CP023141.1|WP_095592419.1|2462376_2463144_+|transporter-substrate-binding-domain-containing-protein
MGVCLLAQAKTRVEILADANYPPYSWQEGEEVKGIYADIVRSVTASMDGYEVVIKAMPWRRGLSMVEQGSAFAIFPPYYLPDGRPWMWPYSQPLLDEELVVMCGTGVAVNTPQAQFPTDYYGLRFGMNAGFTIGGALFWQAIKEQKIGLEEVKSNRENLLKIVRGRVDCTVNDRLSLLYELLSMIKGNQLAVADMSQLKQGPVLSREQGFLGYSRKGEFDFKEDFVEQFDKHLYELKKRDGIRTIVEQYLGKSPR
>NZ_CP023141.1|WP_095592420.1|2463881_2464625_-|amino-acid-ABC-transporter-ATP-binding-protein
MRAATDPIIKASSVEKFYGSEVHALKNVSTQVAEGEVVVIVGPSGSGKSTFLRTLNQLETINDGQIVVDGISLTEPGDVNKLREEVGMVFQSFNLFPHLSVLDNICLAPQKVRGLSRKDAEDRAKALLLKVGLSNKAQSYPSQLSGGQQQRVAIARALAMQPRIMLFDEPTSALDPEMVGEVLDVMKGLAREGMTMVVVTHEMGFAREVADRVLFMESGELLVDEKPADFFDNPPSPRLCQFLSQVL
>NZ_CP023141.1|WP_041203158.1|2464608_2465568_-|amino-acid-ABC-transporter-permease
MEKQPNQLLWHGVFLLIVLAALFGIYKAVQSVDYTWRWERIPQYIAYQAEQKNYAEFDGTVVAGTTEADKGKLFLQNDLDPNQRQPIAVSGGQVAQGDTVFRGDTLDTQLSWTAGPIAWGVWMTIKLSLVAGIFAILLGTLAGLARLSPNPALRNLAITYVELIRGTPLLVQIFIVYFFIGTVLNLDRFTAGVAALAVFTGAYVAEIVRAGISSIHKGQMEAGRSLGMTSAQTMRYVILPQAFKRVLPPLAGQFINLIKDSSLVSVISITDLTKAGREVVSSTFSPFEVWFTVALLYLVLTGTLSFLVRRLEVKYARSN
>NZ_CP023141.1|WP_167385330.1|2465658_2466447_-|transporter-substrate-binding-domain-containing-protein
MIKKLILSTLLLCGLANAAPSSTLDAVLERGVLRVGFDAGYQPFEMTNKQGQYIGFDVDLAKLVAKEMGVKVEFVNTAWDGIIPALLTDKFDVIMGGMTVTPQRNLRVNFADPYIVVGQTIVLRKDKAGEIKSFTDLNDPKYKIAVKLGTTGEQAVKRLIPKATLLQFETQDDAKLEVINGKVDAFVYDLPYNAIFATQNKGAVVHLDKPFTFEPLAWAIRKGDQDTLNWFNNYLRQIKGDGSYDRLYKKWFESTAWLDQLK
>NZ_CP023141.1|WP_010633493.1|2466923_2468252_-|MFS-transporter
MLSFMRSAPPQPLIRDQAEIDACYRHWRLHILLTMYLGYAVFYFTRKSFNFAMPDMLASGMLAKADIGMLWTLFYITYGCSKFFSGIISDRANPRYFMGLGLMATGVINILFGLSSSLWLFAALWVANAFFQGWGWPPCSKLLTSWYSRSERGFWWSAWNTAHNVGGALIPLIVSTLALQHGWRYGMIVPGLIAIVAGLFLCWRLRDTPSAMGLPTVGEWRSDALELAQQTQDAGLSHRQILRKYVLGNPYIWLLACCYVLVYVVRTAINDWGNLYMTEQRGFNLMSANSAISMFEVGGFIGALVAGWGSDKLFNGNRGPMNLIFAVGILLSVGSLWLMPFFSYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKNSAGAATGFVGLFAYMGAALSGYPLAKVMEIWHWQGFFVVISVAAGVSALLLLPFLKAQAPRPREVA

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Crispr_ID: NZ_CP023141_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023141_5

2491229-2491348

Orphan

Consensus_repeat	Method
GGGCATTGCGCTGGCGATGCTTGGTGTAATCCTGCGCTTTGGCT	CRISPRCasFinder

1 spacers

DinG

The CRISPR arrays of NZ_CP023141_5

>merge|NZ_CP023141|5|2491229-2491348|CRISPRCasFinder
GGGCATTGCGCTGGCGATGCTTGGTGTAATCCTGCGCTTTGGCTGGGATAACGGCCGTCATTTGCCGTCTTGGCGAGGGGCATGCGCTGGCGATGCTTGGTGTAATCCTGCGCTTTGGCT

>NZ_CP023141|5|5|2491229-2491348|CRISPRCasFinder
GGGCATTGCGCTGGCGATGCTTGGTGTAATCCTGCGCTTTGGCT	GGGATAACGGCCGTCATTTGCCGTCTTGGCGA
GGGGCATGCGCTGGCGATGCTTGGTGTAATCCTGCGCTTTGGCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023141.1\|WP_167385331.1\|2480213_2482286_-\|ATP-dependent-DNA-helicase-DinG	DinG	COG1199_DinG_CAS-IV-A	gnl\|CDD\|236966
NZ_CP023141.1\|WP_095592426.1\|2477113_2478262_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|179614
NZ_CP023141.1\|WP_005302702.1\|2494278_2494467_+\|Trm112-family-protein	unknown	unknown	gnl\|CDD\|183328
NZ_CP023141.1\|WP_095592429.1\|2487981_2488476_-\|DUF2062-domain-containing-protein	unknown	unknown	gnl\|CDD\|378263
NZ_CP023141.1\|WP_167385332.1\|2483965_2484907_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|180519
NZ_CP023141.1\|WP_095592431.1\|2496261_2498112_+\|excinuclease-ABC-subunit-UvrC	unknown	unknown	gnl\|CDD\|234792
NZ_CP023141.1\|WP_010633507.1\|2485081_2486272_+\|aspartate/tyrosine/aromatic-aminotransferase	unknown	unknown	gnl\|CDD\|181731
NZ_CP023141.1\|WP_095592432.1\|2500802_2501336_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023141.1\|WP_011706585.1\|2488469_2488988_-\|DUF2062-domain-containing-protein	unknown	unknown	gnl\|CDD\|378263
NZ_CP023141.1\|WP_043160279.1\|2482667_2483735_+\|porin	unknown	unknown	gnl\|CDD\|225744
NZ_CP023141.1\|WP_010633516.1\|2498414_2498969_+\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|182763
NZ_CP023141.1\|WP_174704179.1\|2488925_2491217_+\|DNA-internalization-related-competence-protein-ComEC/Rec2	unknown	unknown	gnl\|CDD\|236924
NZ_CP023141.1\|WP_095592430.1\|2493153_2494155_+\|tetraacyldisaccharide-4'-kinase	unknown	unknown	gnl\|CDD\|234808
NZ_CP023141.1\|WP_005302696.1\|2495428_2496073_+\|UvrY/SirA/GacA-family-response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|236538
NZ_CP023141.1\|WP_005302704.1\|2491384_2493154_+\|lipid-A-ABC-transporter-ATP-binding-protein/permease-MsbA	unknown	unknown	gnl\|CDD\|183016
NZ_CP023141.1\|WP_147323350.1\|2499661_2500462_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023141.1\|WP_010633503.1\|2479379_2480039_-\|DUF2057-domain-containing-protein	unknown	unknown	gnl\|CDD\|378258
NZ_CP023141.1\|WP_010633514.1\|2494463_2495216_+\|3-deoxy-manno-octulosonate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|235473
NZ_CP023141.1\|WP_095592428.1\|2486349_2487858_-\|DUF853-family-protein	unknown	unknown	gnl\|CDD\|283518
NZ_CP023141.1\|WP_095592433.1\|2501361_2501553_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP023141.1\|WP_167385331.1\|2480213_2482286_-\|ATP-dependent-DNA-helicase-DinG	gnl\|CDD\|236966	PRK11747, dinG, ATP-dependent DNA helicase DinG; Provisional.	0
NZ_CP023141.1\|WP_095592426.1\|2477113_2478262_+\|MFS-transporter	gnl\|CDD\|179614	PRK03633, PRK03633, putative MFS family transporter protein; Provisional.	0
NZ_CP023141.1\|WP_005302702.1\|2494278_2494467_+\|Trm112-family-protein	gnl\|CDD\|183328	PRK11827, PRK11827, protein YcaR.	7.00289e-22
NZ_CP023141.1\|WP_095592429.1\|2487981_2488476_-\|DUF2062-domain-containing-protein	gnl\|CDD\|378263	pfam09835, DUF2062, Uncharacterized protein conserved in bacteria (DUF2062). This domain, found in various prokaryotic proteins, has no known function.	1.25673e-29
NZ_CP023141.1\|WP_167385332.1\|2483965_2484907_+\|hypothetical-protein	gnl\|CDD\|180519	PRK06298, PRK06298, type III secretion system protein; Validated.	0.0036972
NZ_CP023141.1\|WP_095592431.1\|2496261_2498112_+\|excinuclease-ABC-subunit-UvrC	gnl\|CDD\|234792	PRK00558, uvrC, excinuclease ABC subunit UvrC.	0
NZ_CP023141.1\|WP_010633507.1\|2485081_2486272_+\|aspartate/tyrosine/aromatic-aminotransferase	gnl\|CDD\|181731	PRK09257, PRK09257, aromatic amino acid transaminase.	0
NZ_CP023141.1\|WP_011706585.1\|2488469_2488988_-\|DUF2062-domain-containing-protein	gnl\|CDD\|378263	pfam09835, DUF2062, Uncharacterized protein conserved in bacteria (DUF2062). This domain, found in various prokaryotic proteins, has no known function.	3.616e-46
NZ_CP023141.1\|WP_043160279.1\|2482667_2483735_+\|porin	gnl\|CDD\|225744	COG3203, OmpC, Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane].	6.72079e-34
NZ_CP023141.1\|WP_010633516.1\|2498414_2498969_+\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	gnl\|CDD\|182763	PRK10832, PRK10832, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase.	1.69788e-83
NZ_CP023141.1\|WP_174704179.1\|2488925_2491217_+\|DNA-internalization-related-competence-protein-ComEC/Rec2	gnl\|CDD\|236924	PRK11539, PRK11539, ComEC family competence protein; Provisional.	2.83486e-114
NZ_CP023141.1\|WP_095592430.1\|2493153_2494155_+\|tetraacyldisaccharide-4'-kinase	gnl\|CDD\|234808	PRK00652, lpxK, tetraacyldisaccharide 4'-kinase; Reviewed.	1.50784e-172
NZ_CP023141.1\|WP_005302696.1\|2495428_2496073_+\|UvrY/SirA/GacA-family-response-regulator-transcription-factor	gnl\|CDD\|236538	PRK09483, PRK09483, response regulator; Provisional.	2.47463e-165
NZ_CP023141.1\|WP_005302704.1\|2491384_2493154_+\|lipid-A-ABC-transporter-ATP-binding-protein/permease-MsbA	gnl\|CDD\|183016	PRK11176, PRK11176, lipid A ABC transporter ATP-binding protein/permease MsbA.	0
NZ_CP023141.1\|WP_010633503.1\|2479379_2480039_-\|DUF2057-domain-containing-protein	gnl\|CDD\|378258	pfam09829, DUF2057, Uncharacterized protein conserved in bacteria (DUF2057). This domain, found in various prokaryotic proteins, has no known function.	3.53434e-49
NZ_CP023141.1\|WP_010633514.1\|2494463_2495216_+\|3-deoxy-manno-octulosonate-cytidylyltransferase	gnl\|CDD\|235473	PRK05450, PRK05450, 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional.	8.6908e-155
NZ_CP023141.1\|WP_095592428.1\|2486349_2487858_-\|DUF853-family-protein	gnl\|CDD\|283518	pfam05872, DUF853, Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. BMEI1370 is thought to be an ATPase.	0

>NZ_CP023141.1|WP_174704179.1|2488925_2491217_+|DNA-internalization-related-competence-protein-ComEC/Rec2
MLVFLECRRIRQPALYESFGHIETLLNTCTMDLRLLSFALGASSSLLWPWLPSWEWGGLMLLLAFPLAGCRCWRLLFLLLGILWMQGNLHYRLAWLDQLGKKTSHIITAQLQSAEPEGDKFVRLVLRVNRLDEQALTPAPLVRINAYQALPTMTAGSRLTLEVSLKPAHGLANEAGMDGRRLLLGKGITATGNLRRVIQIEAVPAGLRERWLARAAVSWQDLSQGPLLAALTFGEQAGITTEQWSLFRGSGLTHIIAISGQHIALVAVLGWWLGRLFGLRGAILLALLFAALYSWLAGFAVATERALIMVLVWSLLRWRRREWPAHRVWLWAFVVLTLWDPFALYSAGFWLSFLAVALLLVASLLEAKPGLVRLQGLLLLGLLPLQLALFEGIAPLSLLLNLLALPLFCIGIIPLALVGVLLAQLSGELAHLLFWLADVGLQWILWALERLASQWQLWWPVPGWVLPLTALLTLLWCAWHVPGGRPLLLPGGVALLLAAWPAPTHWQLRVLDVGQGLAVLITRGERGILFDTGDRYPGGYNMADAVILPLLNRLDVRVLDYLVISHKDRDHAGNRRAILQALPVRHELSSFDFGRFTTLCRRGQQWRWQGLEMAVLWPQQPGGGHNNDGCVLQIRDGERRILLSADIERQAEQRLLALEGEGLASTLLVSPHHGSRTSSTAPFVAAVAPRYVVHSAGFMNQWGFPRPEVVARYREAQQWVTGLDGEILVEPAPDGLRIRAERKQGPWFRRNGDWWRPALWPAR
>NZ_CP023141.1|WP_011706585.1|2488469_2488988_-|DUF2062-domain-containing-protein
MPKRLIQRWLPDPATLKEHKHLRLFGKLLLDANLWHLNRRSAAGAFAVGLFMAWVPLPCQMLLAAGGAIACRVNLPLSVALVWLSNPFTMPPLFYGAYLTGCQLLGQSSQHIEIEFTWAWLVSVFETVAPPLLLGSLVLALLSSLIGYALIRTCWRISTVRQWQKRKVARAC
>NZ_CP023141.1|WP_095592429.1|2487981_2488476_-|DUF2062-domain-containing-protein
MLNRWFARFKIDPDTLRQQKWFALFGERLLAPALWQGGPRALSGAVAVGIFACWFPIPMHSLIAVGLALAFSLNLPLALLAVWFNNPLTLPFMYLYAYRTGCLVLHKTPEPFHLTWTLHWLEHEAATLVPPFLLGSLLLAVLTAATGGLLTLLLLRLGKLVRPR
>NZ_CP023141.1|WP_095592428.1|2486349_2487858_-|DUF853-family-protein
MAEPLTLAYASGHPLALLPAMANRHGLITGATGTGKTVTLQVLAEGFSRLGVPVFLADVKGDLSGLGAAGAGSAKLDARLAQLGIPAPAFAASPTLFWDLFAEQGHPVRATVSDMGPLLLARLLGLNDTQSGVLELVFKVADDEGLLLLDLKDLRAMVQFAGDNAKSLTTRYGNVSTASIGAILRNLLTLESAGGDHFFGEPMLDIQDLLQTDEAGHGHINVLAASKLTQSSRLYACFLLWLLSELFEQLPEVGDPDKPVLVFFFDEAHLLFNDAPKALLEKIELVVRLIRSKGVGVYFVTQSPADIPDSVLGQLGNRVQHALRAFTPSDQKAVRIAANTLRANPAFDAAGVITELGVGEALVSLLDEKGRPSMVERAFIAPPASRIGPLSDAERQALIQGSLLHGRYETPEDRESAFERLNGGKGTTTGEQGSESSSNGESGLLDALNGILFGRTGPRGGQHDGVVQTAAKSVARTIGSEVGRQLVRGVLGSLLGGGKRRR
>NZ_CP023141.1|WP_010633507.1|2485081_2486272_+|aspartate/tyrosine/aromatic-aminotransferase
MFEKVVAAPADPILGLTEAFRADSRSHKINLGVGIYKDETGATPILHCVKKAEQKLLTDEKTKNYLGIEGNIEYGRIVQQLLFGQDSALVNSGRAKTAQAPGGTGALRIAAEFVVRNNLAKTIWISDPTWANHVSVFQAAGLTVKWYKYYDAATKGLDFAAMQASLAEAQAGDLVLLHGCCHNPTGIDPTADQWRALARQSAAAGWLPLFDFAYQGFARGIEEDAEGLRIFAECHDELLVASSFSKNFGLYNERVGAFTLVSATKAIADVAFTQVKTVIRANYSNPPSHGAAVVTAVVSDPALYAEWVEEVAAMRVRIREMRELLVEKLAARGVNQDFSFIREQNGMFSFSGLSKDQVERLKSEFAIYIVGSGRISVAGITRANIDPLCDAIAKVL
>NZ_CP023141.1|WP_167385332.1|2483965_2484907_+|hypothetical-protein
MIDFSHPQWRELARQLLDNPTSVVRARQWQPLLGLLKDNQLLLALGNHHYELTPAGRRYLTRELTLAEIATAPPTPEEWLHGQGWQLAEQVNERVLAALYRKSEVSFTPNEQIDFEDKGIRLCSDQQVRLRAPQPFSLFFSGGTLLDAAPWLQALGEVALPERNLASLGKILWGEGELLRVITTDSVGAFAELVLPAGSLLIWAPASAQQALQQVIAALPPQVQWSHLTSLDPSGVDRVLTLAQRLGRPASWWLPTVLAPIMTAYALPLADSRPWEPSRIPKSLLAVCSGLVESNGGLSAEVCALAPQWHAIG
>NZ_CP023141.1|WP_043160279.1|2482667_2483735_+|porin
MKKTILAIAIPALFASAANAAVVYDKDGTTFDVYGRVQANYYGDHNTADSTAASGYKDVDGELVGSSRLGWSGKIALNNTWSGIAKTEWQVSAENSANKFDSRHIYVGFDGTQYGKIIFGQTDTAFYDVLEPTDIFNEWGDAGNFYDGRQEGQVIYSNTYGGFKGKLSYQTNDDKAVKVTDVGQGIKETAVYGADVKRNYGYAAAAGYDFDFGLGLNAGYSYSDLENTKTNNTGDKKEWALGAHYAINGFYFAGVYTQGDLSYDNTTGGDKDKGRGYELAASYNVDAWTFLAGYNFKEAKVKSNTAGAEYKDLLDETLLGVQYAFTSKLKAYTEYKIQGIDKLDDEWTVALQYNF
>NZ_CP023141.1|WP_167385331.1|2480213_2482286_-|ATP-dependent-DNA-helicase-DinG
MLSTRLKTTIRNTYRQIADGLPGFVPRKEQNFLVAEIAKTLTGEYDKQRRILVAEAGTGIGKSLSYAQGAIPVARLTQKKLVISTATVALQEQLIHKDLPFYHRHSELPFRFMLVKGRQRYCCEHLLEQAASGSEMANFEFDFGALSKHKPSDADKECYQALWQAYTEGKWDGDRDNWPKPINDNCWDRIAADRHTCNKALTHHQHCPFHRARNDMDAADVLVVNHALLLSDLTMGGGIILPPPDECLYVLDEAHHLPTIARDHGAASASVKGSRRWLEKLAQGAGKLARTLNKESLLDPQLKLQDALASLQPDLKALEQWLAANDRLFNEEKQCRFADGVLPDPLPMLAENLKEASKKALRALDRMQGAIGEALKDGEIRRKDAEPLLAESGFYLQRLEGFCALWEMLGRHVAEGKTPLARWMVKSDDGDIWLHASPIEVGYLLEEWLWSRCLGAVLVSATLTALSSFSYFRHQVGLKEHDGTRYLRLRSPFDYQKAELYLPKMEHEPSAPAFTQELVSILPRLLAGKEASLVLFSSYRQMNEVVVGLRAKGLSLLVQGEASRNALLTLHKQKCDGGQASILFGTGSFSEGLDLPGHYLTNLVITKLPFAVPNSPVEEATAEWVEKRGGNPFLQLTVPEASRKLIQACGRLIRKEADRGRVTILDRRLLTKRYGKGLLDALPPFRRRIE
>NZ_CP023141.1|WP_010633503.1|2479379_2480039_-|DUF2057-domain-containing-protein
MKLTVLVPALAGLLWAGSALADAQLEVNNPYVVQLIDGQSINPKLLDKTSTYPIKAGKHQLVVAFEGNYSSRSDTKLVTAEPLVINFTAADNQKLVLDYKKPRNESEANQFVKEQKVALKDKSSGQVVTTEQFVLPKVEGFQLTRDYQQELINMGKAFNQPKTVAVSTAAVMAANSAPVQVAPSKAQSNPEALTQLQNWYNKADAETRKAFQIWVIQQQ
>NZ_CP023141.1|WP_095592426.1|2477113_2478262_+|MFS-transporter
MTIYTRPVLLLLCGLLLLTLSIAVLNTLVPLWLAHEQLPTWQVGMVGSSYFSGNLLGTLLAGTLIRRCGFNRSYYLASALFAAGCVGLGITLDFWSWLGWRFIAGIGCAMIWVVVESALMCSGNAHNRGRLLAAYMMVYYLGTVLGQLLVSKLPTGLMEVLPWASGLILAAILPLLFTRIVSERSEAQGSTRVWSMLLLRQARLGVDGCIISGIVLGSLYGLMPLYLNHQGVSDAGIGYWMAVMVSAGILGQWPVGRLADRFGRLPVLRVQVLVVILGCGAMLGGVAMGPALFILGAAGFTLYPVAMAWACEKVEHHQLVAMNQALLLSYTIGSLLGPAYTALLMQHLSDNLLFIMIAGVALLYLLMLLRPMGKHSTPVAHA
>NZ_CP023141.1|WP_005302704.1|2491384_2493154_+|lipid-A-ABC-transporter-ATP-binding-protein/permease-MsbA
MQQETSQDSWPVFKRLLGYVRDRKLGLIGGIIGMLGYAAVDTTFVYSIKPLIDKGINGNDPTVLKWMPFFVLGIVALRGVANFLSNYCMAWVGNHVVMRLQQQVFNHMVAMPMSFFDRQNTGHLLSKVTYDASQVSSAASTTLVTLVREGATVIGLLGLMFWHSWQLSVIFLVVGPVVGIIIGLISRRFRQISRHIQQAVGDITTSTEQMLKGHKEVLMFGGQKVEEKRFFKVSNNMRQQTMKMVAADAIGSPVVQMVASIALAAFLYVATIDSVRSELTAGTFTVMITSMMMLLKPLKSLTDVNNQFQRAITACHSLFGLLDTEPEQDTGTRTLERARGEIEFRNVTFTYPTKDTPALHNVSFKVEAGKSVALVGRSGSGKSTIASLLTRFYDIEQGEILLDGVNIRDYRLSELRKQYALVSQHVHLFNDTVASNIAYAAEEQYSLDEIKQAARIAHADEFVSKMSNGYDTVVGENGASLSGGQRQRIAIARALLRDAPVLLLDEATSALDTESERHIQAAIDELCKARTSLVIAHRLSTIEKADEILVIDEGHIVERGNHAALMAQQGTYAQLRAIQFGHATAGGNA
>NZ_CP023141.1|WP_095592430.1|2493153_2494155_+|tetraacyldisaccharide-4'-kinase
MLERLWYAKSGWRWLLAPFALLFAVVSGTRRYAYRHGWRKGYRASLPVIVVGNISVGGNGKTPVVVWLVEQLQARGYRPGVVSRGYGGKAPHYPYRLDAASTTAQAGDEPVLIARRCGCPVVVAPKRADAVRLLEQSGEVDIIITDDGLQHYALARDIELVVVDGARRFGNACLLPMGPLREPVTRLKRVDAIICNGGEPGRGEYPMQLVADAPRRVRDDTPLAAPLSGSVDALAGIGHPPRFFATLEGLGYQLDQRVAYGDHHPFDRDELVGRFAGKPLLMTEKDAVKCRAFALENWWYLPVSAELPASLLDTLLHKLGASGKGQGATKAQG
>NZ_CP023141.1|WP_005302702.1|2494278_2494467_+|Trm112-family-protein
MALDIKLLDIIACPVCKGKLHYNKSVHELVCRFDKLAYPLEEGIPVLLENRARPLNSDELSS
>NZ_CP023141.1|WP_010633514.1|2494463_2495216_+|3-deoxy-manno-octulosonate-cytidylyltransferase
MSFVVVIPARYASTRLPGKPLADIHGKPMVQHVVEKALQSGADRVIVATDDERVQQALAGQTGFEVCMTSKDHQSGTERLAEVCRHYGFAADTIVVNVQGDEPLIPPVIIRQVADNLAAASAPMATLSVPIQDAEEAFNPNAVKVVTDQDGYALYFSRASIPWDRDRFAASREQIGDHYQRHIGIYAYRAGFIQRYVDWAPSALEQVEALEQLRVLWYGEKIHVAQALEAPPVGVDTQADLDKVRALLAN
>NZ_CP023141.1|WP_005302696.1|2495428_2496073_+|UvrY/SirA/GacA-family-response-regulator-transcription-factor
MINVFLVDDHELVRTGIRRILEDVRGIKVVGEAQSGETAVTFCRQNHPDVILMDMNMPGIGGLEATRKILRIRPDVRIIVLTIHSENPFPTKVMQAGAAGYLTKGAAPDEMIHAIRLVHSGQRYISPEIAQQMALSQFASADENPFKSLSERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFSKLNINGDVELTHLAIRYGMLDADTL
>NZ_CP023141.1|WP_095592431.1|2496261_2498112_+|excinuclease-ABC-subunit-UvrC
MTSSEPLFDSKAFLSVVTHQSGVYRMYDSGGTVIYVGKAKDLKKRLASYFRANVDSIKTRTLVRQIADVQVTVTHTETEALILEHNLIKQYQPRYNVLLRDDKSYPWIIITAHQHPRIGVHRGARKVKGEYFGPYPSGGAVRESLHLMQKIFPVRQCEDAVYANRSRPCLLYQLKRCAGPCVAGLVSEAEYAQQVELAKLFLAGKNQQVIGELVGKMESASGDLRFEEAARYRDQIQALRRVTEQQSVSGNVLDELDVVGVAFEQGTACIHVLFIRQGKVLGSRSYFPKVPADTQLDEVVQSFLLQFYLSGQGGRQIPSEVLLDVALEDENVIAETLSQTAGYKVRVVSRTRAERARFIKLASINAQTALRSRLAHKSTTTARYDQLEELLELERPIARMECFDISHTMGERTVASCVVFNREGPLSSEYRRFNIDGITGGDDYAAMEQALERRFGKQQEPDKVPDVLFIDGGLGQLRRAEEILARQLEFLGGKYPLLVGIAKGVTRKAGLETLILGESHEELHLPADMPALHLIQHIRDESHRFAITGHRARRAKARTTSTLEDIPGVGPKRRQALLKYLGGLQEVKKAGVEELAKVPGISQELAQSIHDALHSL
>NZ_CP023141.1|WP_010633516.1|2498414_2498969_+|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase
MTNIPNLLTFFRILLIPVFVILFYLPYQWSYLAAAIVFILAAATDWFDGYLARKLNQSTAFGAFLDPVADKIMVAAALVVIVEHYNTIWVTIPAMTMIGREIIISALREWMAELGKRSSVAVSWIGKWKTMIQMVSLTGLIWQYDIWMVWLAYVLLYVATVLTFWSMFQYMKAAWGDLSYHSRF
>NZ_CP023141.1|WP_147323350.1|2499661_2500462_-|hypothetical-protein
MRTKSLAWKVSASISTLLLQGISFGTWADGEQVCSSEQLAAIKASLPSGTELTAGACKTLPNQPEVTLTSYIFPDSADHHDEMSLPTSIWRVELISQGKVQQRFEETIEEDASIRIGSASIWLDTAPYLLAKGERAFGVRLDIGYGPSCADGFSSRFLHLFRLHNGTLLRVINGAPMLHTYIRKGVPCSPGKIDLERGISYIQVLPGMSNGLHDLRVVTKAKTETIEQDGTSQTSSQRTLSTTLRFNGHEYPVGEWNNLPSKEWWK
>NZ_CP023141.1|WP_095592432.1|2500802_2501336_+|hypothetical-protein
MTGQISWQMRASGLVVALLGIGGLWMAMVFGSEFMDLQALTPADPLRMNDWRGWFAIFVSLLAAPFMLYAGGKLILSRDMPEPDLSSKAVKRRVIFVVSLIVIAAGLGLLTQKVSMSNIERLGWEQCYVKQTSWRFGKEIYSQNCEAHGLMKLDHALDRLSLEALKEKLNKEMFEQK
>NZ_CP023141.1|WP_095592433.1|2501361_2501553_-|hypothetical-protein
MSQTKTRALVEGGRLRRAVAGELQHLEAPRSWMGTESANIFQLLLQLMNVVEQLAGQLSPIIE

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Crispr_ID: NZ_CP023141_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023141_6

2882818-2882923

Orphan

Consensus_repeat	Method
AAAGCCCTGGGCCTGGATTTGGAGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP023141_6

>merge|NZ_CP023141|6|2882818-2882923|CRISPRCasFinder
AAAGCCCTGGGCCTGGATTTGGAGGTAGCGCAATGAACCAGCATCAATATCTGGGCTGGCAGAGTGGGCAGCCAAATCTGAAAGCCCTGGGTCTGGATTTGGAGGT

>NZ_CP023141|6|6|2882818-2882923|CRISPRCasFinder
AAAGCCCTGGGCCTGGATTTGGAGGT	AGCGCAATGAACCAGCATCAATATCTGGGCTGGCAGAGTGGGCAGCCAAATCTG
AAAGCCCTGGGTCTGGATTTGGAGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023141.1\|WP_095592611.1\|2885522_2888624_+\|non-ribosomal-peptide-synthetase	unknown	unknown	gnl\|CDD\|236668
NZ_CP023141.1\|WP_095592616.1\|2899415_2900219_-\|amonabactin-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
NZ_CP023141.1\|WP_095592610.1\|2884614_2885526_+\|isochorismatase-family-protein	unknown	unknown	gnl\|CDD\|238495
NZ_CP023141.1\|WP_005301825.1\|2872988_2874293_+\|inosine/guanosine-kinase	unknown	unknown	gnl\|CDD\|185033
NZ_CP023141.1\|WP_157737183.1\|2900262_2901330_-\|amonabactin-ABC-transporter-permease-subunit-1	unknown	unknown	gnl\|CDD\|376439
NZ_CP023141.1\|WP_095592609.1\|2882929_2884591_+\|(2,3-dihydroxybenzoyl)adenylate-synthase	unknown	unknown	gnl\|CDD\|236803
NZ_CP023141.1\|WP_095592614.1\|2897467_2898412_-\|amonabactin-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223687
NZ_CP023141.1\|WP_005301823.1\|2874481_2874844_+\|DUF2750-domain-containing-protein	unknown	unknown	gnl\|CDD\|378546
NZ_CP023141.1\|WP_095592604.1\|2875012_2875507_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023141.1\|WP_157737179.1\|2871368_2872343_+\|ferrochelatase	unknown	unknown	gnl\|CDD\|234585
NZ_CP023141.1\|WP_095592605.1\|2875469_2877110_-\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|225110
NZ_CP023141.1\|WP_011706317.1\|2872416_2872809_+\|MAPEG-family-protein	unknown	unknown	gnl\|CDD\|226311
NZ_CP023141.1\|WP_157737181.1\|2889529_2895853_+\|amonabactin-biosynthesis-non-ribosomal-peptide-synthetase-AmoG	unknown	unknown	gnl\|CDD\|237054
NZ_CP023141.1\|WP_157737182.1\|2898568_2899354_+\|amonabactin-biosynthesis-phosphopantetheinyl-transferase-AmoD	unknown	unknown	gnl\|CDD\|225524
NZ_CP023141.1\|WP_095592607.1\|2880799_2881351_-\|lipoprotein	unknown	unknown	gnl\|CDD\|182579
NZ_CP023141.1\|WP_095592612.1\|2888644_2889394_+\|2,3-dihydro-2,3-dihydroxybenzoate-dehydrogenase	unknown	unknown	gnl\|CDD\|236190
NZ_CP023141.1\|WP_095592606.1\|2878651_2880652_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023141.1\|WP_095593504.1\|2877298_2878573_+\|glucose-1-phosphate-adenylyltransferase	unknown	unknown	gnl\|CDD\|234824
NZ_CP023141.1\|WP_157737180.1\|2881397_2881640_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023141.1\|WP_095592613.1\|2895849_2897394_+\|amonabactin-biosynthesis-glycine-adenylation-protein-AmoH	unknown	unknown	gnl\|CDD\|341281

Protein	Function_ID	Function_description	E-value
NZ_CP023141.1\|WP_095592611.1\|2885522_2888624_+\|non-ribosomal-peptide-synthetase	gnl\|CDD\|236668	PRK10252, entF, enterobactin non-ribosomal peptide synthetase EntF.	0
NZ_CP023141.1\|WP_095592616.1\|2899415_2900219_-\|amonabactin-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	1.03003e-109
NZ_CP023141.1\|WP_095592610.1\|2884614_2885526_+\|isochorismatase-family-protein	gnl\|CDD\|238495	cd01013, isochorismatase, Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems. Isochorismatase is part of the phenazine biosynthesis pathway. Phenazines are antimicrobial compounds that provide the competitive advantage for certain bacteria.	4.40527e-115
NZ_CP023141.1\|WP_005301825.1\|2872988_2874293_+\|inosine/guanosine-kinase	gnl\|CDD\|185033	PRK15074, PRK15074, inosine/guanosine kinase; Provisional.	0
NZ_CP023141.1\|WP_157737183.1\|2900262_2901330_-\|amonabactin-ABC-transporter-permease-subunit-1	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	5.87743e-65
NZ_CP023141.1\|WP_095592609.1\|2882929_2884591_+\|(2,3-dihydroxybenzoyl)adenylate-synthase	gnl\|CDD\|236803	PRK10946, entE, (2,3-dihydroxybenzoyl)adenylate synthase.	0
NZ_CP023141.1\|WP_095592614.1\|2897467_2898412_-\|amonabactin-ABC-transporter-substrate-binding-protein	gnl\|CDD\|223687	COG0614, FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component [Inorganic ion transport and metabolism].	3.59845e-55
NZ_CP023141.1\|WP_005301823.1\|2874481_2874844_+\|DUF2750-domain-containing-protein	gnl\|CDD\|378546	pfam11042, DUF2750, Protein of unknown function (DUF2750). This family is conserved in Proteobacteria. The function is not known.	1.61684e-36
NZ_CP023141.1\|WP_095593504.1\|2877298_2878573_+\|glucose-1-phosphate-adenylyltransferase	gnl\|CDD\|234824	PRK00725, glgC, glucose-1-phosphate adenylyltransferase; Provisional.	0
NZ_CP023141.1\|WP_157737179.1\|2871368_2872343_+\|ferrochelatase	gnl\|CDD\|234585	PRK00035, hemH, ferrochelatase; Reviewed.	1.35691e-161
NZ_CP023141.1\|WP_095592605.1\|2875469_2877110_-\|GGDEF-domain-containing-protein	gnl\|CDD\|225110	COG2200, Rtn, c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms].	3.61306e-46
NZ_CP023141.1\|WP_011706317.1\|2872416_2872809_+\|MAPEG-family-protein	gnl\|CDD\|226311	COG3788, COG3788, Uncharacterized relative of glutathione S-transferase, MAPEG superfamily [General function prediction only].	8.12452e-24
NZ_CP023141.1\|WP_157737182.1\|2898568_2899354_+\|amonabactin-biosynthesis-phosphopantetheinyl-transferase-AmoD	gnl\|CDD\|225524	COG2977, EntD, Phosphopantetheinyl transferase component of siderophore synthetase [Secondary metabolites biosynthesis, transport, and catabolism].	1.82312e-45
NZ_CP023141.1\|WP_095592607.1\|2880799_2881351_-\|lipoprotein	gnl\|CDD\|182579	PRK10598, PRK10598, lipoprotein; Provisional.	1.64827e-86
NZ_CP023141.1\|WP_095592613.1\|2895849_2897394_+\|amonabactin-biosynthesis-glycine-adenylation-protein-AmoH	gnl\|CDD\|341281	cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase. The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity.	0
NZ_CP023141.1\|WP_157737181.1\|2889529_2895853_+\|amonabactin-biosynthesis-non-ribosomal-peptide-synthetase-AmoG	gnl\|CDD\|237054	PRK12316, PRK12316, peptide synthase; Provisional.	0
NZ_CP023141.1\|WP_095592612.1\|2888644_2889394_+\|2,3-dihydro-2,3-dihydroxybenzoate-dehydrogenase	gnl\|CDD\|236190	PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated.	2.80516e-161

>NZ_CP023141.1|WP_157737180.1|2881397_2881640_-|hypothetical-protein
MIMIINLYLCGGKILALKSPGQWDFYADKTGTYLWILPVVARRAGPTPLARMSTAANIPYEAATKTADSPPALAASAIYP
>NZ_CP023141.1|WP_095592607.1|2880799_2881351_-|lipoprotein
MLKHLLLLPLSLLLAACSLTQYNVSEGEINQYLKERVAFEKQLGIPGIMSSKIRLDEMQSRIGRRQADRIELDAAGDLQVMSPLGSQQMKIRFSLSARPDYVAEQGAIYLRDLELLSVKTEPADVGTALTPLLPTFNQSLSLFLSQTPVYRLDGSRQNEARIKEKVEALKVEPGRLVIPFKLM
>NZ_CP023141.1|WP_095592606.1|2878651_2880652_-|hypothetical-protein
MRKTVLVQAIACALLSGAAHAAVKVEDKTFNTAANMLAYTEFELSGEPLAEALGLDLDVLDANRADEPTPFDFAAGIESYEYSEEAMYALNYQSGMGPHLVNGPQNLARGGTMATLGQRVLAMADAVGFPADEVPQGMYPLSLPYASANPEFTQAVNATPVNGDQITIKTAKGHEKSVKTQVPAYFRDYATLRWSGSDNLLVPAAVGGILLKEVMWSQDFLGGMHVAETDEEVEAASATMDQDGKHKLGVSAADGFNGMMLTEQSIDKLAILQGQLGFDGKQLGAKITPQYDPAKGIVYFPHQVKVTETAKNEVGAIGKLEVVDGSAQLRDAWMMLWPLSEFYAFTDQRSANTNQNPAFHAVFDGAPFAAAPAANKGSDAAKLVAGDDAFSLALNLSGMVFKNLNALHLEPKAGTLVDSWQAGKQGKHVTTFDAAYSLVALQIFQRAQDALPVGYAAGDNGELNLKTAQGQQALVLIRQQADFILANLKGKNGLVHDGITLGGKLDAGQSIDAQFAAIRGLTAAFLATSDAKYRTAARELFIAADKAYFNQKAGTWLAGKQGEYTPWTQAAISGALRSAMLNLRNEGSEKAPALELAQLTQRYVSWFRGTVNGGMQMAEWIGDSGENVIEGAGGDTDEDGVPQVTAAGGKHGTAMVMAAKALITEK
>NZ_CP023141.1|WP_095593504.1|2877298_2878573_+|glucose-1-phosphate-adenylyltransferase
MLLEPVNTAKARQLLNQSMALVLAGGRGSRLKQLTDNRAKPAVHFGGKFRIIDFVLSNCINSGIRRVGVVTQYKSHSLLRHLQSGWSFLRYQMNEFIDLLPAQQRVDEVHWYRGTADAIYQNVDIIRDYGPKYIVVLAGDHIYKMDYAAMLLDHVRLGAKVTVACIEVPRAEASAFGVMDIDEQRKIRAFVEKPANPPAMPGNEHVSLASMGIYIFEAEYLYQLLEEDIHNQESKHDFGMDVIPRIVGEGKAFAHPFTMSCVGAKEGLKPYWRDVGTLDSFWEANMDLASVVPELDIYDENWPIWTSQTMTPPAKFVQDRNGQHGMTINSMFAGGSIVSGSFVLNSVLFTHVRVHSFCTLDQAVIFPGVEIGSGCRLRRVVVDKGCKLPDGLVVGENADEDSRRFYRSEQGIVLVTKEMLAKLE
>NZ_CP023141.1|WP_095592605.1|2875469_2877110_-|GGDEF-domain-containing-protein
MLNKLGSNQLMVMALICAPLLLLQGLWLAFASTPLTLLLILATSLLGFGLLIRLVMRLQQADRERQEQVWCRALQLRDPTCLETPTAQAALQQLLAHFNEAELDAHRQISELHNQATQDELTQLQNRHAFRRDMTELLQRDQDTQTATLVLVRATELGKLNAQRGFQSGDAYIKDIANLINKVVSRFPGHQVYRISGADFAVLVRPEANIPPPLLGRDLKIAFDHYQQQHELESAAYSGLTRLSSGQKIEAILARADLALARAQTETVNGWAIQQDDNVVELQGQHHWKLVLTELLEQERIDFTYQPIQPMHRSMLAYNEIYTRFSSADGTVLPTDTLFAMAQRLDMVMRLEQMLVIHVMRQYRAFGSNQSRWGINLSSNLLQNSAFLIWLDRQLLNDPNTSANLVFELDEEHLERNLTGAKRVFELLRRNGSRSAICNFGKGIGSFNLFRELKPDYIKLDPALITGLEQDLTNQQFVRMIVDVSHRMGCQVIAEGVEQLGQKQLLQGMYVDGLQGYLIARPQPLRPDISQLGLFTEDASTSTESE
>NZ_CP023141.1|WP_095592604.1|2875012_2875507_+|hypothetical-protein
MFVFDVTGAAGERAEIRVQALDWGQSGPVTFHCDDDRLAVLLLTDCRCDAVGFFNLLAGCKPLYLEQWLSYLQETGRIAKQSCQLESPAQENYLAKAGLEHEELNALLGQVYQVAGFNRLQINRYLKNRHNPTALATRYDQKELERYRQLNDIILTLLKLKHPQ
>NZ_CP023141.1|WP_005301823.1|2874481_2874844_+|DUF2750-domain-containing-protein
MSKLTDNLDANFQLFIEEVRESGQVWGLRYGEDWVVCRSAEFEDADVMPLWSAEEDARLHCVDEWADYEPEVIELEEFLDIWINDLDEDDVLVGPNWNADLEGQELEPIELAKALVELDA
>NZ_CP023141.1|WP_005301825.1|2872988_2874293_+|inosine/guanosine-kinase
MKFPGQRKSKHYFPVDRRDPLISQSAELSERGKAYVVGIDQTLVDIEAHVDLAFLERYGLSRGHSMLISDEVAEQIYDELKSNNMVVSEFAGGTIGNTMHNYSVLADSHSILLGVMSQDIRIGSYAYRYLCNTSSRVNLDYLQPVDGPVGRCFTFITEGGERSFGINAGKMDHLDVAHIPEEIIKESSALVITAYLVRGEDGTPMKDAAMAAVRYAREAGVPVVLTLGTRFVIESDPQWWRDFISENVTVLAMNEEEGEALTGFSDPLAAADKALDWADMVLCTAGPVGLYMAAYTEDDFKRETTLPLLPGVIPEFNMYEFSRPMTRSGCRVPKRIYSHISPYMGGPEKIKNTNGAGDGALSAVLHDMVANAYHRSAVPNSAKHVAEFLTYSSLSQVCKYANRVSYEVLAQSSPRLSRGLPEKEDSLEEVYWER
>NZ_CP023141.1|WP_011706317.1|2872416_2872809_+|MAPEG-family-protein
MMHITLIYAGLLGLLFLLLSFWVVKRRAQFKVMIGEGEAPEMRAAIRAHGNFAEYVPLTLLLMALCELAGVGAFWLHAGGLALLVGRILHAIGIQIPKAPNLPRLVGTLLFWLALGLFSVLALAQGLAAG
>NZ_CP023141.1|WP_157737179.1|2871368_2872343_+|ferrochelatase
MTTKTGILLVNLGTPAAPTTAAVKAFLSQFLHDQRVVDLPRYLWCPLLHFIILPTRSPKVAKLYQQVWTEQGSPLMVISQQQRAALEQELRREGVEVPVALAMTYGSPSLEEGWQALKAKGVNRVILLPLYPQYSVSTTASVFDGWSRAMKKERNLPVVRLIRDYHAHPEYIQALAMSVRRHWEQHGQGEHLLMSFHGIPERYEREGDPYGQQCRRTAALLAEALGLDASQWTASFQSRFGKEEWLKPYTDVTIGGLPATGIKRLDVICPAFAADCLETLEEIQVQNREIFMAAGGEQFEYIPALNSDQAHIRMMVSLICRELA
>NZ_CP023141.1|WP_095592609.1|2882929_2884591_+|(2,3-dihydroxybenzoyl)adenylate-synthase
MTHSNRFLPYTRWPDELAQRYRAKGYWRGEPLTAMLARQCERAPDAEAILCGERRFSYGELDAVSSRLAENLARHGLGVGDTALVQLPNVAEFYLVFFALLKAGIAPVNALFSHNRLELASYAEQIRPRLFIGSLAHPLFASKGRESELLTTMGAELVLLDGDTGELGLSRWLAKVAEGEPVKSGPTPANEVAFFQLSGGSTGTPKLIPRTHDDYYYSVRRSVELCGLGPHTCYLCALPAPHNFPLSSPGALGVFEAGGTVVLAPDPSPISCFPLIARHRINLTSLVPPAVSLWLQAAEADPAARTQLESLDLLQVGGAKLGEAVASKIGPLLGCRLQQVFGMAEGLVNYTRLDDPDEKIIHTQGRPMSPDDEVRILDEAGNPVAPGESGALHTRGPYTFRGYYQSPAHNARVFDSEGFYCSGDLVVQDADGYLTVVGRQKDQINRGGEKIAAEEVENQLLHHPAITHAALVSMPDSAMGEKSCAFIVTTEPGLKPLALRKFLRERGVADFKLPDRFETLDALPMTAVGKIDKQGLRARIAHAIAANQSLTTA
>NZ_CP023141.1|WP_095592610.1|2884614_2885526_+|isochorismatase-family-protein
MAIPTLNNYAMPSQWKANKVDWTLEPKRAALLIHDMQEYFTAFYGENSPLIAALTERLAAVRKQCKALGIPVFYTAQPKDQSPEDRALLNDMWGPGLNKRPEQQQVVAALCPERDDTVLVKWRYSAFQRSELEQMLKELGRDQLIIGGIYGHIGCMMTACDAFMRDIQPFFLADGVADFSLADHQMALDYVATRCGKVIRCEEVLALAPASASAAQPTNPLLTYEGLKARLLSHIDEDEGEFDPDENLIDYGLDSVRIMALLTEWRAAGVELGFVDLAKLPTLNGWWRLIESKLAAQALEVTP
>NZ_CP023141.1|WP_095592611.1|2885522_2888624_+|non-ribosomal-peptide-synthetase
MNRFPLTIPQQGLWSGHLLNDDKAMFNTAECIAFDGKVEVAVLAAALAKAVGECEALRGHFEQDGETVCFVPADLPLAYEEASLERDDETLARAWAWADLRRPFELTQEAPCRFALLRGPGRDYLYSCVHHIALDGFGATLLFQRIAELYAEGLAGEMNSPSPFGSLAEVLAEEAGREQSGKNAAARTFWQEQLQGWPEVTSFGSLRAPIAAEFIRESRPLPAALWQSLTGFADEHKLGWPDLLLAGLSAQLSLSSGQDKTLLGLMMMNRIGSASLTVPCMQMNITPLALTLGEELDLAGAAGAVAKAKRGVRKHQHYRYELLRRDLGLVGGDKRLFGPLVNIMPFDHARRFGQLSAHILNISAGPVEDLTIEVQVGVDGQPRLDLDANPGCYCQADLAAIADTLFALLGRWLAEPAQTLGALKGDWLAEQRASALIAGPAHEVIKARPVLDALCHFAAQTPHKIALIQSSEQGEVRFSYEALLARCEQMAAALQAAGVAPGDKVGVMLARTPQAIFAQLAVLLAGAVYVPLDPDQPLERQGHILRLGEVKTLITQAEYRHKLASLFAGRTLLAGDLVSDDRLNQPAADRAVAYLMFTSGSTGLPKGVAVSHGALDHFAAAARCRYRLDEEARMLQFAPFNFDASIEEVFATLSAGATLVLRTDALLESMPAFAAGVEQMGITHLDLPTAFWNEWVVALTAGQAHIPAGLTTVIIGGEAVYPEQLAQWQRQGRSDVRLFNTYGPTETTVVVTTQELQQEDPSQAQLPIGLPLAGMLALVLGAGEQPAEEGELVLLGPQLANGYVGGVQGSFGTLKVGEQELPVYRTGDRVRLVAGRLVYLGRRDNEFKISGYRIQPGEVEAQLLALPGVDEACVQGVSIGSVRRLVAFVAGSERDSRVIKAQLARVLPAAMIPTDYRHYDQLPRTGSNKLDRKALLAAYQAGGEALTLGSETENRVGAIWQQILGLATMAPTDNFFELGGQSLQTIQIVNRLGAEFGVQVKVSDVFDHPRLDDFCRFLDGLLAEDEESVEMVW
>NZ_CP023141.1|WP_095592612.1|2888644_2889394_+|2,3-dihydro-2,3-dihydroxybenzoate-dehydrogenase
MAFDFTGKRVWVTGAGRGIGREVATQFVAAGAIVVGLDLAFPEADYPYATRLLDIGDSKAVNACCAALLVDGGLDVLVNGAGVLRLGSTETLSDDDWHDCMTVNASGVFYLLRALVPHFKEQRRGAIVTIGSNAAHVPRMQMAAYCASKAAVTSLTQTVGLELAPFGVRANLVSPGSTDTPMLRGMLPSEEAMARTIAGLPEQFKLGIPLRKVATPAEIAHTVLFLASDLASHITLQDLVVDGGATLSA
>NZ_CP023141.1|WP_157737181.1|2889529_2895853_+|amonabactin-biosynthesis-non-ribosomal-peptide-synthetase-AmoG
MNNMILLLKQLERQGVKLALNDKGQLISQSSKEAVTPAIGATIKAHKNELVRCLAARAAFEAPILAQREAEGARQGPLSSSQSGLWFIEQYEEASHLYNMPVYFRVKGELDTAALEFAFDHLFARHPSMRTRFIKDEAGRGAQEILPHTPFKLQIEDVSAEPIAEREAYVARRVREEIGRPFSLTQGDLSRVHLIRLGSREHVLLITQHHIISDGWSVKNMFADLKRAFLAHQNREPLQVSELPLTYIDYARWFNSPRFLDYHAEFKPFWVDRLGGSPEVHGLPLDKPRPAHQDSGGELVFSTIESDLWESFKRLCQRHSTSNFIGLHALFALLMVRQSGEKEVVIGTPLAYRERHEIESLVGFFVNTLVLRTQLSGKPSFVDYLQQCREEDLAAFDHQLYRFEALAEAIGADRTTAINPIFQIMLVYQAKVDFNDLIPGCQLVEETSPVLPAKTDISVKVTELMDSVRVDWLFATALFERETVQALADRLLHLMRAVVAAPETDIWQLPLEAGTDQAALAAQLADLPRDYPSRDTLLCHIERCVIQLPDALAVSDGAQSLTYGELEARANRLAHWLQAQGVTPGAAIGIQARRDVAFVIALLACWKAGAAYVPLDPAYPAERLAHILGDASISLVLGGVPDPRLGEALAGTTAEYHDLQGLVLDKMPTSTPALPRDAAMLAQIIYTSGSTGLPKGVMVEQGSLVNLMADHGERIALDQDGAMFNCMSLSFDAGNMTTLLPLYCGAALHFGEPGEGVIGAAIACGASHMILPTALLANLLPPTDLGSLKAIGFGGEACPSSLVERWGERVALFNMYGPTECTVTALCAQLTPGGPITIGRPVNHLKALILDEGGNLCPVGVPGELCLAGLGLARGYLNLPERTQEAFIELAFDATNGERTHRLYRTGDRALLRRDGNIQYLGRIDEQIKLRGYRIEPGEIETRLAELCPAIRQIKVVVQEGRLLAYACLQAGAREPDGDALLQRAGECLPEYMVPARLCWLPEMPLTPNGKLDLRRLPAIVWQQSKGEPQNELEQTVLAIWQGVLKQPLGVEDDFFRLGGDSILSIQLTTRLRDAGLHCSVKDVFEAKTVRRLCRQLSQQQAVSHRSEQGSLTGEFPLHPIQHWFFEQGFAKPGHWNQGVILRLPAGVDDEDLRGWLNALRQHHDALRLAVTPAGQCYLAELPLPPLPTLDAANFDEAELQARLTELQGELDPASGHTLAWARLRNLSLEGDREGEGDTVEGLFLAFHHLVIDAVSWRILAEDLARVSRGEPLPAKGSSYRQWGEGLAAYAKREEDQLGFWLAQGEGSQGHLLEAARAADGRAAASLLQLSQETTARLIDTANQAYFTRVPDLLLAALTRTLSEQGYGSRHCVMLEGHGREAIDAELDVSRTLGWFTSAYPLALADAGAWDALVCATKEQLRAVPDKGVGFNALRLHHPRGWALPEALIVFNYLGVSHQGEAAQPWQPLPLAPGAPTSPDNLPRELVSLHGGVFDGRLTLRQVGALNQQASDALMARLADNLTALVDHCCTVKAPRHTPSDFPGIILSQAALDRVLSEREVETLLPMTSLQQSMFHHRALLPRDHAYHLQTEIDYHQPLDVAIYRQAWQGQIARWPALRSELVLADGVALQRILKRAELPFHYEDLSEVGNEAGEAEARVQAYREQDLARPIPLDQAPLLRLACFKLASDHHKVIFSAHHGVLDGWSGPVLLGSLHRGYQALMNGLLPQREPDTAWLEFGRHIASQARSAEAYWQGREELLTKPNDLACLFGVTLDARASGRHTQLRPAVCATALPAEVATLLARRARELGVTAGLLAQYAWHRLLARRSGDAVTLVGNVTPGRDYPIEGITASVGLYINSLPLALEWRTELTLAEHIARLQTDLMALNEHGTQSLAALTKGRSRLFQSLFVFENYPMPAAPVAPEPHQLVPRFGTVVEKVELPLSLVVSSRGETLQLRLEFDGEQIPEARAEAVLADWLAELDWLAQADLSQPASVVATAQPPVMPQVAATPSTVTQVAAPGLAQPPAEARVLVALWERQCGVPGIWQQTLCELGVDSVQQLALLAALNEAFGQERAPLTLQTLKAHPSPSRLYRHWLVRQTEAAL
>NZ_CP023141.1|WP_095592613.1|2895849_2897394_+|amonabactin-biosynthesis-glycine-adenylation-protein-AmoH
MTVTIKHEAPLVQTRPAPREGAANLGARLAACLAASPLTPAIRMGGEDLSEGGSDEQWLSYGALNDRVAQIAARLQGLAVGERVGLYLSRSPDLVASLLACLRLGLTFVPLEPDFPVERLQGIARQARLSAVICDGDRPAPAFGCPLRTLDGPAAAGSVSWPRVDDALAAYMMFTSGSTGEPKGVVISRRALLCFLDGIRERLGLSPSCHWLFITTPAFDISLLEMLGPLWGGGRLTVAGGEHNKDPLGMQALLEADPSINWLQATPACWRMLLKAGWQGRNTLTALCGGEALDSGLAEQLCARTRRLWNCYGPTEATVWSLVSEVRWPPTDGQITISHSLPGYRHWVLDEAGQQVAEGECGELCIESPALCEGYWRKPALTRAAFLRLATHRLYRTGDRVRRLGTDRFLYLGRRDDQVKLRGFRIELGEVEAGLRRQAGVQEAAVRLVGEGDEAMLVGYVEAKSGVTLNRLALRKGLQATLPHYMVPARLILLEALPKTGSGKLDRKALPLPE
>NZ_CP023141.1|WP_095592614.1|2897467_2898412_-|amonabactin-ABC-transporter-substrate-binding-protein
MKISSPLAAVLMLASLVGFQAQAGSETRQVTDADGKTQVVPAQPKRVVVLSEIDLDSALTLGLQPVGTVNGRGQSTLPRYLLQQAGKEIAVVGDLDNPNLEKLIDLEPDLILTGQTKPELLALLKEIAPTVVTGNWGDSWKEIFNRSAHVLNRDAEAKTFLAQYDARLQEARSKLAKHQGERLSIVRWNPKGPSYMHSGTFASSVVEEMGLTRPTHQIGDKTPHSPALSLESLNLLDGDWLVIGTLSANGDAVDAMKQAEQTPAFQQLGAIKSKRFGAVDGSLWTSTGGPQAALKVIDDVEQLLAKPDAAPITQ
>NZ_CP023141.1|WP_157737182.1|2898568_2899354_+|amonabactin-biosynthesis-phosphopantetheinyl-transferase-AmoD
MMFIATAPACSLDRFIVQADSLPLPGAAHLALQRVCFDPAAFTPACYDAAGMVLPASLQRAAPKRLGEFLAGRLAAREALRPFHLAKHPVAIGNAREPCWPAGFEGSISHSLLQGRGMALCAVRPGRAGMGLDLEGWLAEGQASELWPGIASGEEWARLAAAARAVGLSRAEALTLIFSAKESLFKALYPKVGRYFDFLDARWLTMTEQTLTLELVDSLTPTLPAGWRCTLYWQPMYWQALHWQTGHWQTRPGGVLTSLLL
>NZ_CP023141.1|WP_095592616.1|2899415_2900219_-|amonabactin-ABC-transporter-ATP-binding-protein
MTLTINHLQFGYQHKPVFNDISFTIPQGKLVGIVGPNGGGKSTLLKLLAGQEQQQAGEILLKGKPLASYGKKALARELAYLPQRPLVPAGIQVEQLVQYGRHPHQGWFNQWSEEDARMVSWACERMQLGDILQQSASSLSGGQAQRVWLAMVLAQDADIILLDEPTSALDIGHQTEVMEAIHQITAEGKTVLIVIHDLATAARYCDELIALGDGGIQAMGPAREVVTKSLIDRLYQTDVDILHAPGDGAPIIVPRRRPHAFAMKQQA
>NZ_CP023141.1|WP_157737183.1|2900262_2901330_-|amonabactin-ABC-transporter-permease-subunit-1
MNNSIHPSLTTTLPTGTVCLRVGSRTLLLHRRAWLITLGLLVALVLLSLLALTLGSGKLTMLGVIQTLLGEGNRLSEVTVFKIRLPRIVAVLVAGAAMGLSGCLVQTLIRNRLATPDMIGVNEGASLAIIAFSLYLTLGSWPWWAAPLGALFAAAVLYALCNKPGEQGYLFVVIGIGVSEMMNAIGQFVMSTQSLVHLTSLYLWNMGNFVGQGYSTVLPVGILILLVCPWVVYLSRALGVLRLGPVTAQSLGVNVNRVQLGVLAQAIVVAALGTAIGGPVVFIAMAAPVLASWLSRDRIVPLWIAALCGALLLLASDTLVRVLASPHEVATGIMTRILGGLLLLFILLKDRQKAD

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Crispr_ID: NZ_CP023141_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023141_7

2908668-2908785

Orphan

Consensus_repeat	Method
ACATATTGGGATAGTTGGGGCCGCAGCCGCCCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP023141_7

>merge|NZ_CP023141|7|2908668-2908785|CRISPRCasFinder
ACATATTGGGATAGTTGGGGCCGCAGCCGCCCTTCTGGGCTGCGCATCCTTGTTATCTGCGCAGGTCTGCATGGGCAAGCCTGTTACATATTGGGATAGTTGGGGCCACAGCCGCCCT

>NZ_CP023141|7|7|2908668-2908785|CRISPRCasFinder
ACATATTGGGATAGTTGGGGCCGCAGCCGCCCT	TCTGGGCTGCGCATCCTTGTTATCTGCGCAGGTCTGCATGGGCAAGCCTGTT
ACATATTGGGATAGTTGGGGCCACAGCCGCCCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023141.1\|WP_095592630.1\|2922262_2922682_-\|biopolymer-transporter-ExbD	unknown	unknown	gnl\|CDD\|223917
NZ_CP023141.1\|WP_095592614.1\|2897467_2898412_-\|amonabactin-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223687
NZ_CP023141.1\|WP_167385353.1\|2916428_2918024_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP023141.1\|WP_157737183.1\|2900262_2901330_-\|amonabactin-ABC-transporter-permease-subunit-1	unknown	unknown	gnl\|CDD\|376439
NZ_CP023141.1\|WP_167385354.1\|2918284_2919655_+\|heme-anaerobic-degradation-radical-SAM-methyltransferase-ChuW/HutW	unknown	unknown	gnl\|CDD\|236368
NZ_CP023141.1\|WP_157737182.1\|2898568_2899354_+\|amonabactin-biosynthesis-phosphopantetheinyl-transferase-AmoD	unknown	unknown	gnl\|CDD\|225524
NZ_CP023141.1\|WP_095592618.1\|2902430_2904404_-\|siderophore-amonabactin-TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|227112
NZ_CP023141.1\|WP_017786872.1\|2911367_2912294_+\|electron-transfer-flavoprotein-subunit-alpha	unknown	unknown	gnl\|CDD\|224936
NZ_CP023141.1\|WP_157737184.1\|2904461_2905691_-\|siderophore-amonabactin-export-MFS-transporter	unknown	unknown	gnl\|CDD\|340882
NZ_CP023141.1\|WP_095592616.1\|2899415_2900219_-\|amonabactin-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
NZ_CP023141.1\|WP_005301619.1\|2906708_2907170_-\|DUF2919-domain-containing-protein	unknown	unknown	gnl\|CDD\|378569
NZ_CP023141.1\|WP_095592626.1\|2915276_2916332_+\|3-deoxy-7-phosphoheptulonate-synthase-AroG	unknown	unknown	gnl\|CDD\|236435
NZ_CP023141.1\|WP_167385352.1\|2910517_2911267_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
NZ_CP023141.1\|WP_010633771.1\|2913779_2915063_+\|3-phosphoshikimate-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|237003
NZ_CP023141.1\|WP_005301617.1\|2907312_2908260_-\|magnesium/cobalt-transporter-CorA	unknown	unknown	gnl\|CDD\|213369
NZ_CP023141.1\|WP_095592628.1\|2919728_2921093_-\|exodeoxyribonuclease-VII-large-subunit	unknown	unknown	gnl\|CDD\|234714
NZ_CP023141.1\|WP_017779624.1\|2901343_2902360_-\|amonabactin-ABC-transporter-permease-subunit-2	unknown	unknown	gnl\|CDD\|376439
NZ_CP023141.1\|WP_095592620.1\|2905942_2906695_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023141.1\|WP_095592629.1\|2921194_2922124_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|273359
NZ_CP023141.1\|WP_095592624.1\|2912518_2913607_+\|3-phosphoserine/phosphohydroxythreonine-transaminase	unknown	unknown	gnl\|CDD\|235428

Protein	Function_ID	Function_description	E-value
NZ_CP023141.1\|WP_095592630.1\|2922262_2922682_-\|biopolymer-transporter-ExbD	gnl\|CDD\|223917	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion].	9.84655e-39
NZ_CP023141.1\|WP_095592616.1\|2899415_2900219_-\|amonabactin-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	1.03003e-109
NZ_CP023141.1\|WP_167385353.1\|2916428_2918024_-\|HAMP-domain-containing-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	4.62556e-59
NZ_CP023141.1\|WP_157737183.1\|2900262_2901330_-\|amonabactin-ABC-transporter-permease-subunit-1	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	5.87743e-65
NZ_CP023141.1\|WP_167385354.1\|2918284_2919655_+\|heme-anaerobic-degradation-radical-SAM-methyltransferase-ChuW/HutW	gnl\|CDD\|236368	PRK09058, PRK09058, heme anaerobic degradation radical SAM methyltransferase ChuW/HutW.	0
NZ_CP023141.1\|WP_157737182.1\|2898568_2899354_+\|amonabactin-biosynthesis-phosphopantetheinyl-transferase-AmoD	gnl\|CDD\|225524	COG2977, EntD, Phosphopantetheinyl transferase component of siderophore synthetase [Secondary metabolites biosynthesis, transport, and catabolism].	1.82312e-45
NZ_CP023141.1\|WP_167385352.1\|2910517_2911267_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	3.56583e-88
NZ_CP023141.1\|WP_017786872.1\|2911367_2912294_+\|electron-transfer-flavoprotein-subunit-alpha	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	3.08317e-115
NZ_CP023141.1\|WP_157737184.1\|2904461_2905691_-\|siderophore-amonabactin-export-MFS-transporter	gnl\|CDD\|340882	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily. This family is composed of purine efflux pumps such as Escherichia coli NepI and Bacillus subtilis PbuE, sugar efflux transporters such as Corynebacterium glutamicum arabinose efflux permease, multidrug resistance (MDR) transporters such as Streptomyces lividans chloramphenicol resistance protein (CmlR), and similar proteins. NepI and PbuE are involved in the efflux of purine ribonucleosides such as guanosine, adenosine and inosine, as well as purine bases like guanine, adenine, and hypoxanthine, and purine base analogs. They play a role in the maintenance of cellular purine base pools, as well as in protecting the cells and conferring resistance against toxic purine base analogs such as 6-mercaptopurine. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The NepI-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.11554e-38
NZ_CP023141.1\|WP_095592614.1\|2897467_2898412_-\|amonabactin-ABC-transporter-substrate-binding-protein	gnl\|CDD\|223687	COG0614, FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component [Inorganic ion transport and metabolism].	3.59845e-55
NZ_CP023141.1\|WP_005301619.1\|2906708_2907170_-\|DUF2919-domain-containing-protein	gnl\|CDD\|378569	pfam11143, DUF2919, Protein of unknown function (DUF2919). This bacterial family of proteins has no known function. Some members are annotated as YfeZ however this cannot be confirmed.	1.68167e-44
NZ_CP023141.1\|WP_095592628.1\|2919728_2921093_-\|exodeoxyribonuclease-VII-large-subunit	gnl\|CDD\|234714	PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed.	0
NZ_CP023141.1\|WP_095592626.1\|2915276_2916332_+\|3-deoxy-7-phosphoheptulonate-synthase-AroG	gnl\|CDD\|236435	PRK09261, PRK09261, phospho-2-dehydro-3-deoxyheptonate aldolase; Validated.	0
NZ_CP023141.1\|WP_010633771.1\|2913779_2915063_+\|3-phosphoshikimate-1-carboxyvinyltransferase	gnl\|CDD\|237003	PRK11860, PRK11860, bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidylate kinase.	0
NZ_CP023141.1\|WP_005301617.1\|2907312_2908260_-\|magnesium/cobalt-transporter-CorA	gnl\|CDD\|213369	cd12835, EcCorA-like_1, Escherichia coli Mg2+ transporter CorA_like subgroup. A bacterial subgroup of the Escherichia coli CorA-Salmonella typhimurium ZntB_like (EcCorA_ZntB-like) family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This subgroup includes the Mg2+ transporters Escherichia coli CorA and Salmonella typhimurium CorA (which can also transport Co2+, and Ni2+). Structures of the intracellular domain of Vibrio parahaemolyticus and Salmonella typhimurium ZntB form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA, and Mrs2p. Natural variants such as GVN and GIN, such as occur in some ZntB family proteins, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport.	4.66071e-150
NZ_CP023141.1\|WP_017779624.1\|2901343_2902360_-\|amonabactin-ABC-transporter-permease-subunit-2	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	3.7273e-73
NZ_CP023141.1\|WP_095592618.1\|2902430_2904404_-\|siderophore-amonabactin-TonB-dependent-receptor	gnl\|CDD\|227112	COG4771, FepA, Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and metabolism].	9.05598e-150
NZ_CP023141.1\|WP_095592629.1\|2921194_2922124_-\|EamA-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	8.1192e-19
NZ_CP023141.1\|WP_095592624.1\|2912518_2913607_+\|3-phosphoserine/phosphohydroxythreonine-transaminase	gnl\|CDD\|235428	PRK05355, PRK05355, 3-phosphoserine/phosphohydroxythreonine transaminase.	0

>NZ_CP023141.1|WP_005301617.1|2907312_2908260_-|magnesium/cobalt-transporter-CorA
MITAYILNNKVLDIVTLGPDDIVPDNTVWLDAYKPDTAEREWLTGLFLEEVPDKEELDDIEASARFYWDTDGLHIHSLFPQRIGRDTKGVHVSFTLRNNLLISIREDDIGLVRLLRHYMRQDRLEVEDALDILLEVQNLKVEYLSDLIEDGYKTLENTADQIFEPDQINPMLKELMAQEEANGQIRLSLHDTRRALRFLKRSLRQRMTGEQNKWIDEMLHDVESLLPHTQFLFDKINFQLEASMGVTNLEQNKVIKIFSVAAVIFLPPTLIASIYGMNFGRMPELAWEYGYPLSLVLMVMSSLGTGLFFKRKGWL
>NZ_CP023141.1|WP_005301619.1|2906708_2907170_-|DUF2919-domain-containing-protein
MTLYPEHRYDDHGQLRPPLWFWPIALLLTRSVWLFLMAGVTRESGSAILTLFYPDRLTLYISLLTDVPAMLALLACGGTYQQTRSFRAWLRRHSPLLLLCSAVSGLLMQLHSLNLQKWSFSWPTALVLVATLWSLWYLLRSRQLREYAVDQPH
>NZ_CP023141.1|WP_095592620.1|2905942_2906695_+|hypothetical-protein
MRRWNWCGLWLLWGLWCLPLRAEVKVIPVFETQAAVQTLKDLYPELGVSAMGNQLVLSGSAAQLQEAEAALAKFNQPPQSLLIEWRVDGASSGQQAGVGLGRDAAKRQWLLEGNAQQYQHSQNDSWQVRGLSGRPVLLQMGTYQPVTFYQWRGGQVVGLMPLVNGLYATATLIGDRVQIALSSEQARLEQGTINRGQSATEVSGSPGQWLTVGELSTSAAQQGSSLGTQLQGGGGTQSDRQTLQIRVTRQ
>NZ_CP023141.1|WP_157737184.1|2904461_2905691_-|siderophore-amonabactin-export-MFS-transporter
MKPVTTTPAAIHLALLVNMLSMGSMMMVMPLGPDLVISLGMQPEQTGYFSGGATLGAALMGLIAAPWLDRVNRKPALLVLLTLRFLLLMACTLVQDSQQLLVLFVLSGCVAGPLAAILMAAVLDLVPPAERGRRLAYVGMAFSLAAILVVPIALVLAQWFGWQSPFLLFGVCGLLLALLSSRLLPSLPVNRAPHGSGLRQLLASPLCQGALLILCLQMFGHFLLIPHFANYFQFNLAFPREQIAALYLCGGLASMATMRLCGGWIDQGRARAAILITSLLLALITLLGFAMPVGVPVYLLFTLFMALSSARSSSTLAITASIPAPHQRAAFMSFQGTVTNVAAGLGSLLSARLLVSDQSGALHGFAGLAWINIGCGLLACGGVWLLLKGLAQTRNNNNPESGPARQGSQ
>NZ_CP023141.1|WP_095592618.1|2902430_2904404_-|siderophore-amonabactin-TonB-dependent-receptor
MQLQPGVFRLNPILLSLGLIALPGLAQAEAPKANETLVVTATQTKHTELSAPASVSVVTRTDLDKMNANNIGEALKHVPGVNVIGTNPTGRNEIKIRGMGGDYTLLLINGKRVNARETLGSSFGNDFDLSSIPMAAIERIEVIRGPVSSLYGADALGGVVNVILRQAKEQTEAAFGYTHTMPTKGDGGDANRGNAFVSGALIDNKLLGSLVVEGYQRDRWHSDQSNNKDADALEKREVVNMLSSLKWLVSDNQDVEFDLGYNQNDMDSYFNNVPRAPTAPATPHNVQKLDRLSLGVTHNGRWEHFDSRARYYFEQTDLMDDSQLNGGAADVTQTNHTVDGQLSGYLGDHLLTSGAEFRKTELEHSRSITNGSVDASQSALYLQDEFGFGDLALTLSGRLDHHETYGNEFSPRAYALYKLSDEWVIKGGAGKAFKAPTLAQSSEGFATTACRGACKVVGNPDLKPETAVSYELGTAYEAQRFGAGLTGFHNDIEDLIQSDQWGPGYRPSVMTYLNVKKARVKGLELTGWVDVMDDVKLTGNWTMLDSEDKSTGDDLAKTPDHTGNLSLDWQATEIVSTNLAWQYVGSQFIKVPMHNSQALKSDSYQTLDVNTKWKVTPALDFKLGITNLTNTKRDQVATDADFILEGRTVYAGVDYKL
>NZ_CP023141.1|WP_017779624.1|2901343_2902360_-|amonabactin-ABC-transporter-permease-subunit-2
MQRHQTHLFWLGVILLFLLICLSLATGAGVYGGREVAGFLLGDPALVADEKLAMIVHTLRLPRTLCALVVGVSLALAASMLQSATRNPLAEPGLLGVNAGAVFALVIGLTYFGVESAYGYLLWSGMGALLGNLIVLGLGLMVGRSNPLKLILVGVALSATFGGLSNFLLLSNQVVLEQFRFWNLGSLAASDLDAVLTVMPFALLGLLLTLALCRQLTLMQMGDNQALALGIRPTRVRIGVLLAATLFTACAIAIAGPIGFVGFLAAYCARLVEPVRLAIQVRFSALFGVLFLLGADILARWLIQPFELPNGVILALIGAPVLILVVRSGGFRALLAVK
>NZ_CP023141.1|WP_157737183.1|2900262_2901330_-|amonabactin-ABC-transporter-permease-subunit-1
MNNSIHPSLTTTLPTGTVCLRVGSRTLLLHRRAWLITLGLLVALVLLSLLALTLGSGKLTMLGVIQTLLGEGNRLSEVTVFKIRLPRIVAVLVAGAAMGLSGCLVQTLIRNRLATPDMIGVNEGASLAIIAFSLYLTLGSWPWWAAPLGALFAAAVLYALCNKPGEQGYLFVVIGIGVSEMMNAIGQFVMSTQSLVHLTSLYLWNMGNFVGQGYSTVLPVGILILLVCPWVVYLSRALGVLRLGPVTAQSLGVNVNRVQLGVLAQAIVVAALGTAIGGPVVFIAMAAPVLASWLSRDRIVPLWIAALCGALLLLASDTLVRVLASPHEVATGIMTRILGGLLLLFILLKDRQKAD
>NZ_CP023141.1|WP_095592616.1|2899415_2900219_-|amonabactin-ABC-transporter-ATP-binding-protein
MTLTINHLQFGYQHKPVFNDISFTIPQGKLVGIVGPNGGGKSTLLKLLAGQEQQQAGEILLKGKPLASYGKKALARELAYLPQRPLVPAGIQVEQLVQYGRHPHQGWFNQWSEEDARMVSWACERMQLGDILQQSASSLSGGQAQRVWLAMVLAQDADIILLDEPTSALDIGHQTEVMEAIHQITAEGKTVLIVIHDLATAARYCDELIALGDGGIQAMGPAREVVTKSLIDRLYQTDVDILHAPGDGAPIIVPRRRPHAFAMKQQA
>NZ_CP023141.1|WP_157737182.1|2898568_2899354_+|amonabactin-biosynthesis-phosphopantetheinyl-transferase-AmoD
MMFIATAPACSLDRFIVQADSLPLPGAAHLALQRVCFDPAAFTPACYDAAGMVLPASLQRAAPKRLGEFLAGRLAAREALRPFHLAKHPVAIGNAREPCWPAGFEGSISHSLLQGRGMALCAVRPGRAGMGLDLEGWLAEGQASELWPGIASGEEWARLAAAARAVGLSRAEALTLIFSAKESLFKALYPKVGRYFDFLDARWLTMTEQTLTLELVDSLTPTLPAGWRCTLYWQPMYWQALHWQTGHWQTRPGGVLTSLLL
>NZ_CP023141.1|WP_095592614.1|2897467_2898412_-|amonabactin-ABC-transporter-substrate-binding-protein
MKISSPLAAVLMLASLVGFQAQAGSETRQVTDADGKTQVVPAQPKRVVVLSEIDLDSALTLGLQPVGTVNGRGQSTLPRYLLQQAGKEIAVVGDLDNPNLEKLIDLEPDLILTGQTKPELLALLKEIAPTVVTGNWGDSWKEIFNRSAHVLNRDAEAKTFLAQYDARLQEARSKLAKHQGERLSIVRWNPKGPSYMHSGTFASSVVEEMGLTRPTHQIGDKTPHSPALSLESLNLLDGDWLVIGTLSANGDAVDAMKQAEQTPAFQQLGAIKSKRFGAVDGSLWTSTGGPQAALKVIDDVEQLLAKPDAAPITQ
>NZ_CP023141.1|WP_167385352.1|2910517_2911267_+|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MKLLVAVKRVLDYNVKVRVKSDGSDVELANVKMGINPFCEIAVEEGVRLREAGVASELVVVTFGPEAAAEQLRHALALGADRARHYVTGETLTPLTVARALQQVCEREKPDLVLLGKQSIDSDNNQVGQMLAALNDWPLATFASAIKLVEGELQVTREIDGGLETLGMALPAVVTVDLRLNEPRFASLPNIMKAKRKPLESAPFADLGVEPAGQTRLLGVMAPAARSAGIMVGSVDELLDKLKHEAKVL
>NZ_CP023141.1|WP_017786872.1|2911367_2912294_+|electron-transfer-flavoprotein-subunit-alpha
MSVLIIAEHHQGQLADNVARLVTAGGQLGGEVHLLLLGQGLTEAGEQAAALQGVSRVLLAEHPMLAEGLSDGVDPLLAHIARDYQHCLMAASTQGKDLLPRVAARLGVEMLSEVTGIESGDTFLRPIYAGNAVARVASSAPIKVLTIRPTAFAKAASGGQAEVERLPVSEVTCRTRLIERRAVRSARPELAAARVVVSGGRALGSKAQFALIEALADKLGGAVGASRAAVDAGFVANDLQVGQTGKVVAPELYIAVGISGAIQHLAGMKESKVIVAINKDSEAPIFQVADYGLVGDLFTLLPELTAKL
>NZ_CP023141.1|WP_095592624.1|2912518_2913607_+|3-phosphoserine/phosphohydroxythreonine-transaminase
MSKQIYNFCAGPAMLPVEVMERAQREFCNFQGLGASVMELSHRGKPYMAVAEKAEADLRELLAVPDNYKVLFMHGGGRGQFSAVPMNLLGGVNKKADFLLTGVWSQSAVDEAKKYGDIQTFQGVAKNEQGISHLLPTPAFRADAAYVHYCPNETIDGIEMFDIPATGEVPLVADLSSTILSRSIDVSRFGIIYAGAQKNIGPSGLAIAIVRDDLLNQARADVPSIFDYQLTAKNDSMFNTPPTYAWYLAGLVFEWLKEQGGLAAMEARNKEKADFLYGYLDQSSFYGNQVDASCRSRMNIPFQLKNAELDKLFLAESEAAGLLALKGHRIVGGMRASLYNAMPLEGVKALVSFMDGFAKRHG
>NZ_CP023141.1|WP_010633771.1|2913779_2915063_+|3-phosphoshikimate-1-carboxyvinyltransferase
MNSLRLEPISRVAGEVNLPGSKSVSNRALLLAALARGTTRLTNLLDSDDIRHMLAALTQLGVKYKLSADKTECTVHGLGRSFAVKEPVNLFLGNAGTAMRPLCAALCLGSGEYTLGGEPRMEERPIGHLVDALREAGAHIQYLKKDGYPPLVVDAKGLWGGDVHVDGSVSSQFLTAFLMAAPMAAGDTRIHIKGELVSKPYIDITLHIMKQFGVVIEHDNYKLFYIKGNQSYVSPGDFLVEGDASSASYFLAAGAIKGKVRVTGIGKHSIQGDIHFADVLEKMGARITWGDDFIEAEQAPLHGIDMDMNHIPDAAMTIAVAALFAEGPTSIRNIYNWRVKETDRLHAMATELRKLGVEVEEGRDFITVTPPAQLKHAAIDTYNDHRIAMCFSLVALSDTAVTINDPGCTSKTFPDYFDKLASISQRA
>NZ_CP023141.1|WP_095592626.1|2915276_2916332_+|3-deoxy-7-phosphoheptulonate-synthase-AroG
MQHQTDDVRISEIKELLPPVAVLEKFPATEVASNTVFESRQAIHQILAGEDQRLLVVIGPCSIHDPAAALEYGKRLKVLRDELKGQLEIVMRVYFEKPRTTVGWKGLINDPYLDNSCQINDGLRIGRKLLLDLNDMGQPTASEFLDMITPQYVADLMSWGAIGARTTESQVHRELASGLSCPVGFKNGTDGTIKVAIDAIGAASAPHHFLSVTKYGHSAIVATRGNPDCHIILRGGREPNYSAAHVDEVVKGLDKAGLPQKVMIDFSHANSSKQFKNQMLVAEDVAGQLRAGSKAVFGVMVESHLVEGRQDLVEGCELTFGQSITDACIGWADTETLLRNLADAVATRNAG
>NZ_CP023141.1|WP_167385353.1|2916428_2918024_-|HAMP-domain-containing-protein
MQNLSLNWKIFLPLALVIGCTFALSFELSAWLQRDLAIRLAGEKVESAANTYMDQLNVLMMTGAIANRQIVQTKLKSEAGIVEARLIRAPAVTSLFGPGHPDQQIEDKLDERAINQGETILEQQGNQLTLIKPFKAYKEYRGTQCTTCHQVAEGTVMGAVRISYDLSHTFGEIHRNNLILSGSLVAVFGLGFGLLGWVLQRYIKRPVRHLQLAMTRMAKERDLSLPLINPNRDELGEMTRAVSDMVQGFRHSLQEVESATHQLYQESNQIRQVATQTEGSARQQESMTVQVAAAVSELAASSHEVREHARKSAELSALTNQDAANTSRLAQHSINDMGEMSAEIERVDKVIQQLDNRCLAVDGVLEVIKGIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRALSNRSRAASEEISQMIAALQNEAQSAVSVIGDAKAKADESIHKTEATLAAMQNIICRISSINDLNAQMAQSAEEQDRVCSEVDGSVSDIRNTSNDTLGQAHAANLASVQLVEQCRKLEQLLKTYRW
>NZ_CP023141.1|WP_167385354.1|2918284_2919655_+|heme-anaerobic-degradation-radical-SAM-methyltransferase-ChuW/HutW
MTPLLTPTMTGLATPDPLKFAFGAKTSAHASRGGVRPFTLDHADWQAWWRRESEADERALYIHIPFCRKRCSFCNFFENGANPARITRYVNALCGALARAAETPFVQSRPFSAVYVGGGTPTDMSADELAMLAAAIRRFPLTPDAEVTLEGRLNGFDDAKWHSALAGGFNRFSFGVQSFDTEVRQAAARFDDRETLLTRLGELTRHDDAVIVADLIFGLPGQDDAVWRQDIADVMVSGVHGVDLYQLIAMAGTHLARAEAKGKLGWAADGQQRATMYAYGAQTLEQGGWQRLSCSHWRRGEAEQSRYNQMAKRGAEILPFGAGAGGNVHGHGLMYGRDLALWHEALAADQRAPGMVMGRNPNGRLDGLLRGALDCGWLALARLPTPLRAHLQPLFEAWQQHGLATLSDARLELTLAGRFWNVNLQAGLFEYLQLNPLAGSGTAPADAAQAVRHSLV
>NZ_CP023141.1|WP_095592628.1|2919728_2921093_-|exodeoxyribonuclease-VII-large-subunit
MNYRNEPSQSRQQQVFTVTRLNSAVRMILEQDLGLVWLTGELSNLAMPSSGHWYFSLKDMSAQVRCAMFKGNNRRVAFRPQDGMQVLVQARVSLYEPRGDYQLIIESMQPAGDGVLALRFEELKRRLGAEGLFDEGRKRPLPREPRAVGLITSATGAALHDMLTVLKRRAPDLPVFIYPTQVQGSAAISQIVSAIALANRRAEVDVLIVGRGGGSLEDLWCFNEEAVARAIAHSAIPVVSAVGHEVDVTISDFAADLRAPTPSAAAELVAPDQSARAQRLAHLKQQLLQAMSRQQTAARHDFILLQKRLDHQDPKRRLEQQSQRLDELSARLQQLMNHRLHQGERRLANLELRLQGKSPERLLATGKRRHQLAEERLHALIAKRQDLASHRLAMLSTRLDGVSPLATLGRGYSITRTQSGEVISRAAQVDAGQTLVTQLAEGQLRVRVEEVHQP
>NZ_CP023141.1|WP_095592629.1|2921194_2922124_-|EamA-family-transporter
MKPADYGRLLLLATIWGASFLFMRIAAPAFGAVNTTFLRVLFALIGLAVMLLLLRAPIGFQGKLKSAMLLGVINSAIPFLMYAIAALWLPAGYSAILNATTPLMGALIGFSCFNERLDRRKWLGVVLGVIGISLITTTGEVSAGGHLLPGVLACLFATACYGLAGFLTRSWITHRGGLDAKLVAFGSQLGASLFLLPFFAYQLAAGPAVDWAVPTAWASVLAVGVVCTALAYLLYFRLIADIGPLRSLTVTFLIPPFGILWGALVLGETLSQGFVLGGLVVCLSVWLVTSQASTPAVQARAQPQDPDAR
>NZ_CP023141.1|WP_095592630.1|2922262_2922682_-|biopolymer-transporter-ExbD
MAFGKLSDEGDDQPLSEINMIPMIDVMLVLLIVFMITAPLLTNAVKLELPEASSQLNQPDKQDINLAIDGAGKIYWNDQEVDEAALLARMESAGQAEGELPEIQLRIDRKVEYGIIARVMAQASRHGLHKIAFVSQPEP

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Crispr_ID: NZ_CP023141_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023141_8

4127650-4127754

Orphan

Consensus_repeat	Method
GAAGATATGAGCGACAAATTCCAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP023141_8

>merge|NZ_CP023141|8|4127650-4127754|CRISPRCasFinder
GAAGATATGAGCGACAAATTCCAAGGCCGGATCATGGCCTGCAGCGGATATCTGCCAGTGAATGAACAGAACAAGGCCGCGAAGATATGAGCGACAAATTCCAAG

>NZ_CP023141|8|8|4127650-4127754|CRISPRCasFinder
GAAGATATGAGCGACAAATTCCAAG	GCCGGATCATGGCCTGCAGCGGATATCTGCCAGTGAATGAACAGAACAAGGCCGC
GAAGATATGAGCGACAAATTCCAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023141.1\|WP_095593125.1\|4114859_4115336_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP023141.1\|WP_095593134.1\|4135758_4137738_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372638
NZ_CP023141.1\|WP_095593540.1\|4115756_4116869_+\|DUF4297-domain-containing-protein	unknown	unknown	gnl\|CDD\|372918
NZ_CP023141.1\|WP_157737198.1\|4119325_4119520_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023141.1\|WP_024942908.1\|4135432_4135762_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023141.1\|WP_095593131.1\|4131347_4131755_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023141.1\|WP_095593132.1\|4132367_4133987_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NZ_CP023141.1\|WP_095593130.1\|4129976_4131107_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|225406
NZ_CP023141.1\|WP_010634594.1\|4128468_4129839_+\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|236452
NZ_CP023141.1\|WP_095593127.1\|4123852_4124620_+\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|334031
NZ_CP023141.1\|WP_172442681.1\|4134639_4135308_-\|pyridoxamine-5'-phosphate-oxidase	unknown	unknown	gnl\|CDD\|235555
NZ_CP023141.1\|WP_024942910.1\|4137947_4139159_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|237857
NZ_CP023141.1\|WP_095593128.1\|4124697_4125615_+\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|211334
NZ_CP023141.1\|WP_017409976.1\|4123546_4123852_+\|PTS-fructose-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|224362
NZ_CP023141.1\|WP_010634593.1\|4126336_4127443_+\|tRNA-2-thiouridine(34)-synthase-MnmA	unknown	unknown	gnl\|CDD\|234664
NZ_CP023141.1\|WP_095593129.1\|4125710_4126178_+\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239647
NZ_CP023141.1\|WP_095593126.1\|4119518_4121426_+\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|182066
NZ_CP023141.1\|WP_010634589.1\|4121841_4123248_+\|hexose-6-phosphate:phosphate-antiporter	unknown	unknown	gnl\|CDD\|236564
NZ_CP023141.1\|WP_005298877.1\|4131819_4132335_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|225695
NZ_CP023141.1\|WP_095593133.1\|4133986_4134601_-\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|223698

Protein	Function_ID	Function_description	E-value
NZ_CP023141.1\|WP_095593125.1\|4114859_4115336_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	4.96538e-11
NZ_CP023141.1\|WP_095593134.1\|4135758_4137738_-\|hypothetical-protein	gnl\|CDD\|372638	pfam13582, Reprolysin_3, Metallo-peptidase family M12B Reprolysin-like. This zinc-binding metallo-peptidase has the characteristic binding motif HExxGHxxGxxH of Reprolysin-like peptidases of family M12B.	9.58388e-32
NZ_CP023141.1\|WP_095593540.1\|4115756_4116869_+\|DUF4297-domain-containing-protein	gnl\|CDD\|372918	pfam14130, DUF4297, Domain of unknown function (DUF4297). This presumed domain is functionally uncharacterized. This domain family is found in bacteria and archaea, and is typically between 207 and 221 amino acids in length.	8.9861e-06
NZ_CP023141.1\|WP_024942910.1\|4137947_4139159_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|237857	PRK14902, PRK14902, 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB.	4.32523e-82
NZ_CP023141.1\|WP_005298877.1\|4131819_4132335_-\|N-acetyltransferase	gnl\|CDD\|225695	COG3153, COG3153, Predicted acetyltransferase [General function prediction only].	5.23133e-51
NZ_CP023141.1\|WP_095593132.1\|4132367_4133987_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	3.86736e-30
NZ_CP023141.1\|WP_095593130.1\|4129976_4131107_+\|cupin-domain-containing-protein	gnl\|CDD\|225406	COG2850, COG2850, Uncharacterized conserved protein [Function unknown].	1.29826e-121
NZ_CP023141.1\|WP_010634594.1\|4128468_4129839_+\|adenylosuccinate-lyase	gnl\|CDD\|236452	PRK09285, PRK09285, adenylosuccinate lyase; Provisional.	0
NZ_CP023141.1\|WP_095593127.1\|4123852_4124620_+\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|334031	pfam00359, PTS_EIIA_2, Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2.	2.85646e-17
NZ_CP023141.1\|WP_172442681.1\|4134639_4135308_-\|pyridoxamine-5'-phosphate-oxidase	gnl\|CDD\|235555	PRK05679, PRK05679, pyridoxal 5'-phosphate synthase.	4.91357e-125
NZ_CP023141.1\|WP_095593128.1\|4124697_4125615_+\|pseudouridine-synthase	gnl\|CDD\|211334	cd02566, PseudoU_synth_RluE, Pseudouridine synthase, Escherichia coli RluE. This group is comprised of bacterial proteins similar to E. coli RluE. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. Escherichia coli RluE makes psi2457 in 23S RNA. psi2457 is not universally conserved.	6.6819e-90
NZ_CP023141.1\|WP_017409976.1\|4123546_4123852_+\|PTS-fructose-transporter-subunit-IIB	gnl\|CDD\|224362	COG1445, FrwB, Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism].	3.11113e-40
NZ_CP023141.1\|WP_010634593.1\|4126336_4127443_+\|tRNA-2-thiouridine(34)-synthase-MnmA	gnl\|CDD\|234664	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.	0
NZ_CP023141.1\|WP_095593129.1\|4125710_4126178_+\|NUDIX-hydrolase	gnl\|CDD\|239647	cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	6.35e-68
NZ_CP023141.1\|WP_095593126.1\|4119518_4121426_+\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|182066	PRK09765, PRK09765, PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional.	1.56603e-128
NZ_CP023141.1\|WP_010634589.1\|4121841_4123248_+\|hexose-6-phosphate:phosphate-antiporter	gnl\|CDD\|236564	PRK09556, uhpT, hexose-6-phosphate:phosphate antiporter.	0
NZ_CP023141.1\|WP_095593133.1\|4133986_4134601_-\|glutathione-S-transferase-family-protein	gnl\|CDD\|223698	COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	5.44682e-44

>NZ_CP023141.1|WP_010634593.1|4126336_4127443_+|tRNA-2-thiouridine(34)-synthase-MnmA
MTDNSQIKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDTDEYCSAAQDLADAKAVCDKLGMKLHTINFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEELGATYIATGHYVRRDDSTGRPRLLRGLDTNKDQSYFLYTLSETQVGQSLFPVGDLEKPEVRRIAEQLDLITAKKKDSTGICFIGERKFKDFLAKFLPAQPGPIETVDGKVIGEHQGLMYHTLGQRKGLGIGGRKDATEEAWYVVDKEVERNTLIVAQGEHPRLYSDGLIASQLHWVDRTPIREPRRCTVKTRYRQEDIPCLIQPIDDETIRVIFDEKQAAVTPGQSAVFYDGEVCLGGGIIEQRFSHPV
>NZ_CP023141.1|WP_095593129.1|4125710_4126178_+|NUDIX-hydrolase
MSDHPPLPARLTVAALVHWQGRFLLVEEEIKGQRRFNQPAGHVEPGEDLVQAACRELKEETGLTAAPTAWLGVYLYKPADSEATFVRIAVIFDLEKAPGQHHPEDPDGDVLACHWLTLEEIAECKAALRSPLVWQCIQDYLAGARLPLSALKAFI
>NZ_CP023141.1|WP_095593128.1|4124697_4125615_+|pseudouridine-synthase
MHAMKSARPRLSLSARPDTEHKAKGPATARPSQRREAQHAMRDKEGERKPAPAPADRKLLLLNKPYMVLCQFTDEAGRETLKDYITEPGIYAAGRLDRDSEGLLLLTNDGKLQARLTQPGEKTPKTYWVQVEGVPSEEKLAALRAGVELNDGMTLPAGARIMDEPAVWPRNPPIRERKEIPTCWLEIKIVEGRNRQVRRMTAHIGHPTLRLVRYAIGEWTLDGLAPGESRALPAPELAAAPRQSAVHGKPRASAKPQGAGSNSKARPTRHAQHQERDSREASPRSANRSGGRGTARRPARSKPSE
>NZ_CP023141.1|WP_095593127.1|4123852_4124620_+|PTS-sugar-transporter-subunit-IIA
MLIREISFHCRLGLTITQAKQLSRLAGLFKSHIQFINVTRRQAVEATNQLSLLTLATQPGDLCLLLIEGLDAELAHMAFTCWCVELGQPLGRPGSAALAEQRLGQALPDYCFTLAQLGHATAPLDKAQALAVLVDLLPAALISDRPMLEQAIAVREQLAATIIRPGLAMPHVICPAIRRPALSLLSSSEPIEWGSALGPVQTLILLAVPAGLAPEQLRPLTRLARALIDEQVGTALLHAGSSPARQAIVIDGLLG
>NZ_CP023141.1|WP_017409976.1|4123546_4123852_+|PTS-fructose-transporter-subunit-IIB
MKILAVTACPTGIAHTYMAAEALQKAADKLGLKIKVETQGAMGLENILTARDIAGADLVLIASDIEIEQKDRFLGCPIHQVALEAVLLDAVAVLKTAAPGV
>NZ_CP023141.1|WP_010634589.1|4121841_4123248_+|hexose-6-phosphate:phosphate-antiporter
MFKLLEQVRVPTLNLPVEARRKLWFKPFMQSYLVVFIGYLTMYLIRKNFNIAQNDMIQEYGLSMTELGMIGLGFSITYGVGKTIVSYYADGKNTKQFLPLMLILSSLCMLGFSASMGGTGFSLYLMIFFYAASGFFQSCGGSCSYSTITKWTPRNKRGTYLGMWNLSHNVGGAGAAGVALFGANYLFDGNVLGMFIFPSIIALIVGFVGLRFGSDSPEAYGLGKVEELFDEVASEEDVATEEQKLTKWQIFVKYVLLNKVIWLLCFANIFLYVVRIGIDQWSTVYAHQELGFSKDVAIQGFTFFEVGALVGTLMWGYLSDLANGRRGLVACVALALIIATLGLYQHATTQFMFLGSLFLLGFLVFGPQLLIGVAAVGFVPKQGISVADGVKGTFAYLIGDSFAKLGLGMIADGTPIFGLTGWSGTFAALDMAAAACLVLMACVAVAEERKIRRIKRELKAATLATQSV
>NZ_CP023141.1|WP_095593126.1|4119518_4121426_+|PTS-sugar-transporter-subunit-IIA
MITTLINEQLIALDLKATRKEEVFTEMTRLLAAQGKVSDEQQFIKDLWAREELDNTGFEEGVALPHAKSAAVSTPAVAIGISRAGIEYGAEDGKPSRLFFMIASPAGGANHHIEVLAELSAKLIEEGFIDALLAAKTPTDALALLLEKKEETVATPAADKGLIIGVTGCPAGIAHTYLAAESLERAAKELGFEVKVETNGSIGVKNSPTAAEIARASAIVVACDKQVDMARFNGKPLIKTGVKAPIKDGKGLIEQALKAPAYVADKDERKSEEKSSGGSSDLYRYLMNGVSHMIPFVVTGGLLIALALAIGGDPTPSGMQIPAGSMWNQILNVGVAAFTLMIPILAGYIAYAIGDRPALAPGFIGGWIANNGSFYGADAGTGFIGAIIAGLLVGYLVRWIATRHYHKMVQPLVPILIAPIVGSLFIAAVFIFIIGAPIADMMTGLNAMLLSMSGGSLVLLGIVLGGMAGFDMGGPVNKVAFLFSVGMIASGQTQFMGAMACAIPAAPLGMSLATVLGRKLGIFDATEIEAGKAAGAMGLVGISEGAIPFAARDPLAVIPANVLGSMTAAVMAFLFGITNSVAHGGPIVALLGAVNKPLLALLCMICGAIVTGVVAVALKKLRVKKSDEVTLAKAA
>NZ_CP023141.1|WP_157737198.1|4119325_4119520_-|hypothetical-protein
MAFSLLLAGACWHFFLGYRPGHADKSDPTIIPPAGQRTYRTKLRNTGFLCDMALCVILIALQTS
>NZ_CP023141.1|WP_095593540.1|4115756_4116869_+|DUF4297-domain-containing-protein
MNKAANSGIDALLGFEFQRNCALYLLLNDYEQFKERNFFICIEHHDDFLYCYRTNCHQLIEEVHAFQAKKLSGNVWSINERFSEILTKMLGVGISLKSDPITKSKDYSHKLTFISNSNIELKYTPKKIEKTKGKKELIYTLNEQNCKCKYSTIPDEIKNKIKEKVITFCESNQTAYHDSELENLHIQWIDFPRTKKLQIDTLVGLMCRKFPHVFDPVAAVELLLSLFREVESTYNQGKIITLLDSSKRVEGNEIKLAIDIIENEQKTFNLWRNNSAALSRAFRIPIGIQSNLENHIRNTFELLKDMNNNEHQIIKCFVRENDFSMDYYSYDEMFESYLFKIKETHTLRLSNIDIFFSTLCSFVEYHGKAL
>NZ_CP023141.1|WP_095593125.1|4114859_4115336_+|GNAT-family-N-acetyltransferase
MTFVEMAPGQLPLALLLEADPAEQRIAAYLPGAWGFAALAGNEVVGACVTGLVGEQTAEIFNISVAPNRQRQGIGSGLLRFVLTSLAGKGVHRVELGTGSFGHQLTYYQRHGFRVDGVIKDHFLIHYPEPLMEHGIQHKDMLRLSLMLEPNNPLHSGQ
>NZ_CP023141.1|WP_010634594.1|4128468_4129839_+|adenylosuccinate-lyase
MELSALTAVSPIDGRYGDKADALRPIFSEFGLLRFRVEVEVRWLQKLASHAGIPEVPALSAAASALLDGIVSNFNESDAARIKQIERTTNHDVKAVEYFLKEKVEVNPELAAVSEFIHFACTSEDINNNSHGLMLKTAREEVIKPYCEKLIAEIKRLAAEYRDMPLLSRTHGQPATPSTMGKEMANVAYRLERQLKQIMAVEILGKINGAVGNYNAHISAYPEVDWHQFSEEFVTSLGLTWNPYTTQIEPHDYIAELFDAMARFNTILIDFDRDVWGYISLGHFKQRTIAGEIGSSTMPHKVNPIDFENSEGNLGLANAVFQHLASKLPISRWQRDLTDSTVLRNLGVAVGYSLIAYQATLKGISKLEANADAMAADLDANWEVLAEPIQTVMRRYGIEKPYEKLKELTRGRRVDAEGMRTFIDTLELPEAVKVELKKLTPANYIGDAQRLVDLLK
>NZ_CP023141.1|WP_095593130.1|4129976_4131107_+|cupin-domain-containing-protein
MYQLNLDIAHFLEHYWQKRPLLIKGGFTDFQDPISPDELAGLAMEEVIESRLVTRFNNKWEAAHGPFESYDHLGEENWTVLVQACNHWAPEVNELALPFQFIPGWRFDDVMVSFSTPHGGVGPHIDNYDVFITQGQGKRHWRVGDATPLNEFAAHAALLHCEPFEAIIDVIMEPGDILYIPPGFPHEGYAIEPSLNFSVGFRAPDAKALISSFADHLIDNEIRTERYGDADLKPRARHGEIQPHELHRLRELMQQALDDETLFKEWFGTMISEAKHDLDVSPMEPDYSAEEVADLLTQGEPAIKVPGLRSVWFSGESQTCYIDGEAWTLPSEDAAAISLLCDKDMVTQADMVELADQAGFLQLLTRLVNRGYWFFN
>NZ_CP023141.1|WP_095593131.1|4131347_4131755_+|hypothetical-protein
MQISTRPMPLPGYGNAYPKLTPEQLNQGRDKALDKRDEYVATQEEKETTRRTLAVSYTEQQQDKAAVDRYLQASGQESDEQSAPTAVDLYRMEERHQQQQQLGDYLQYRQSPLGKQLAGMTGAEDRKGNLLDTRA
>NZ_CP023141.1|WP_005298877.1|4131819_4132335_-|N-acetyltransferase
MLRTERPGDMLPVYDLVSAAFGRTDEAELVNRLRECGAAVVTMVEEEEYEFMGHLMLSPITINGVEGPWLGLAPVAVHPDWQGQGIGSDLVREGLDTALEMDWKAVVVLGDPTYYSRFGFRPASEFGLHCIYEVPADCFMAMELQEGGLAGVQGEVLYHPLFDELPEETAS
>NZ_CP023141.1|WP_095593132.1|4132367_4133987_-|GNAT-family-N-acetyltransferase
MELLIERALWQPHWAPVLQAWQRQGHGWQLLQSKVDECLPSDTGGLWSCCPPDGVRSASALLAAWLDGDLPGQQAVDPSRQILISGSASLLTLAREEGLLTLGPQGADLTLTEQDDLGAVLNRLLACRLTVPMLAEPPSRSEPALQLRPLLALDEAEVVRYCSDAALARYTLNIPHPYPPEAARDWLAGCWRKAALGLGWSWALTLPAGEGHAPLVGVISLHWNGELAWWVGVPWQNRGLATRAARLVKVFAFDRLQLPVLTARHMPDNHASGRVMAKLGMRYCGRRALSGQRQSLSQNQSEVSYWQLARSQTLAAPLERQLAPLLADARVVAAILQTQVGEGAPQRLALFMTNRDEAEEGEPAAAPPDGPLAVEYYDQDALAQAEPEQLHLLRGLLLKDAEEQGLDYLLQLASLQRQGPVLLTRAERRQRLRWLAREESRLALLAAEPLTHRYHLLDLLVAMPALLDELAGRWHRDADDTLAWLAQAEPPLFNAYRTAITRLQPADLHELLVQVADRFPESTLPFLDKDAQGGGQFVE
>NZ_CP023141.1|WP_095593133.1|4133986_4134601_-|glutathione-S-transferase-family-protein
MRLYGDLKSGNCYKPWLLARWLELPLDWVPVDVLAGETRTPDFLALNPNGKIPVLELAQGDTLAESNAILFYLAQGSPLWPAEPRQQAEVLKWLFFEQYSHEPYIAVARFIVHYLGRPESQEARLDGLKAGGEKALSVLEQRLKQSPYLCGEAPTIADLALYAYTHVAEEGIFSLQGWPAIRAWIARIEAHPRHLSLPVACQAG
>NZ_CP023141.1|WP_172442681.1|4134639_4135308_-|pyridoxamine-5'-phosphate-oxidase
MGGKERRKIKMMDVADLRREYTRGGLHRADLPAEPLALFEKWLAQACEARLTDPTAMVVGTVDADGQPWQRTVLLKHYDAEGMVFYTNMGSRKAHQLEGNPRISLLFPWHTLDRQVHVTGRVEKMSTFEVMKYFHSRPKDSQIAAWVSKQSTRISARGVLEAKFLELKQKFANGEVPLPSFWGGFRVRIDTVEFWQGGEHRLHDRFYYTREGEGWHIERLAP
>NZ_CP023141.1|WP_024942908.1|4135432_4135762_-|hypothetical-protein
MRAAWLVLASLLGGCQADADTLEQAVSASLAKQDYRLIVRAGRGEVAPGIAPEQQASAKARCGVRYLEGLGDVIKPGQQEAQAKLAAYAADYNRRMLAHCPSLPATDRQ
>NZ_CP023141.1|WP_095593134.1|4135758_4137738_-|hypothetical-protein
MQLMKFSPLALVVASLMSSGGLAAKEWDTVAARATAADGYEVRANQFRVAKVPIDYFAGLQAGARSLTLPLPDGGEVTFTLQAYDLLPADQAAKFPEIKTFKGHNPAAPVETGRFDLGPLGFHAMFTHQGKTVFVDPLSNAEGYAVYYQQDAYSRLGEEADKVIGSDASKALAHKVQVDGNVRKRYVIAISAAGEYTQFHGGSKVLATAAIATLLNRVNEVYQRDVGAEFQLASGNDNIIFTDPISDPFTNTDSDAALNITVQSNAQALPSEPLGAFDIGHVVNTGGGGLAGLGVLCTTGRSRGVTGSSTPQGDAFFIDYVAHEIGHQFGADHTFNGTTNSCGSGNRVADQAWEPGSGTSIMAYAGICGEENIQPHGDPYFHSKSIEQMRAHMATVPTCGTSIDLVNNAPQAAAGASRIIPANTPFVLKGAGADLDGDPLTYTWEQIDLGTESSSLATMVDDGSRPLFRFVSPTSSPERILPSLPSLLSGTLAKGEAWPTTNRDLNFRLTVRDGKGGVASDDMKLQVVNTGSAFRLTAPLGVSLTPGASQAVSWDVAGTSLAPISCSKVDLLLTQNEGASWSSLAVSQPNSGSATVTLPADLASDARLKVACSDNIFFAISPAKLPVVQSGGSSGGGGGGALGLWTLALALLGWQRRRG
>NZ_CP023141.1|WP_024942910.1|4137947_4139159_+|methyltransferase-domain-containing-protein
MLKSPLLPRLGDLVVAIVDDVLGQGLTLDRAYARQFSGIELKPQEQARIALVTGDLLRRLSLYCALTGIQVRQAEKYVWPLLHSWHAFHKIAQPNHPTLDRFNEEAFRRRLTEAKKNPVLMDGCPTWLEKLGSEQLGDAWPAERAALTAMPKRYLRVNTLKCTRDELQAALAKEQVTTVPVEGVESALEVTSDAALFRTNAFADGWFEQQDAGSQHIAAALDVAPGMRVIDACAGAGGKTLHLAAMMKGKGRLLAMDVEEWKLENLKQRARRAGAHNVETRVITSSKTVKRLKESADRLLLDVPCSGLGVLKRNPDAKWRDTAERLPVLVALQEEILQRYSQMVKVGGMLVYATCSILPEENRQQVDKFLAANDNFRLLGDHTVSPAATGFDGFYLARIERIA

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Crispr_ID: NZ_CP023141_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023141_9

4198073-4198457

Orphan

Consensus_repeat	Method
TGGGTCAGCACGTTGGCNCCNCCCANCANCA	CRT

6 spacers

The CRISPR arrays of NZ_CP023141_9

>merge|NZ_CP023141|9|4198073-4198457|CRT
TGGGTCAGCACGTTGGCGCCCCCCAGCATCACCGCAGAGAGATCGCCATCACCGACCCGGGTCAGCACGTTGGCAGCCCCCAGCAGCAGCGCCTGGGTATCCCCCTGACCAATCTGGGTCAGCACGTTGGCGCCGCCCCCCAGAATGGCCTGTACCTTGCCGTTGCCCTTCTTGGTCAGCACGTTGGCGCCCCCCAGCAGCACGGCGCGGGTATCGGCAGCCTCGTCCCCCTGGGTGACGTGAGTCAACACGTTGGCACCGCCCAGCAGTCCGGCCGTCAGCTGGCCCGCGCCGAACTTGGTCAGCACGTTGGCACCGCCCACAGACAGGGCATCGAGCCGGCCGTTGCCGACCTGGGTCAGCAGGTTGAAACCGCCCCCCGCCA

>NZ_CP023141|9|1|4198073-4198457|CRT
TGGGTCAGCACGTTGGCGCCCCCCAGCATCA	CCGCAGAGAGATCGCCATCACCGACC
CGGGTCAGCACGTTGGCAGCCCCCAGCAGCA	GCGCCTGGGTATCCCCCTGACCAATC
TGGGTCAGCACGTTGGCGCCGCCCCCCAGAA	TGGCCTGTACCTTGCCGTTGCCCTTC
TTGGTCAGCACGTTGGCGCCCCCCAGCAGCA	CGGCGCGGGTATCGGCAGCCTCGTCCCCCTGGGTGACG
TGAGTCAACACGTTGGCACCGCCCAGCAGTC	CGGCCGTCAGCTGGCCCGCGCCGAAC
TTGGTCAGCACGTTGGCACCGCCCACAGACA	GGGCATCGAGCCGGCCGTTGCCGACC
TGGGTCAGCAGGTTGAAACCGCCCCCCGCCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023141.1\|WP_005298747.1\|4182015_4182384_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378968
NZ_CP023141.1\|WP_024942930.1\|4183634_4184726_-\|HD-GYP-domain-containing-protein	unknown	unknown	gnl\|CDD\|225971
NZ_CP023141.1\|WP_095593143.1\|4178673_4179738_-\|ACR3-family-arsenite-efflux-transporter	unknown	unknown	gnl\|CDD\|213563
NZ_CP023141.1\|WP_005298732.1\|4211170_4212025_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|183082
NZ_CP023141.1\|WP_010634629.1\|4177295_4178072_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|211400
NZ_CP023141.1\|WP_010634645.1\|4207483_4208158_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|182755
NZ_CP023141.1\|WP_167385389.1\|4208157_4209540_+\|GHKL-domain-containing-protein	unknown	unknown	gnl\|CDD\|182754
NZ_CP023141.1\|WP_005298729.1\|4212188_4213628_+\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|235619
NZ_CP023141.1\|WP_095593149.1\|4201745_4203833_+\|type-I-secretion-system-permease/ATPase	unknown	unknown	gnl\|CDD\|273831
NZ_CP023141.1\|WP_095593146.1\|4182881_4183421_+\|NifB/NifX-family-molybdenum-iron-cluster-binding-protein	unknown	unknown	gnl\|CDD\|376832
NZ_CP023141.1\|WP_010634637.1\|4184996_4186325_+\|30S-ribosomal-protein-S12-methylthiotransferase-RimO	unknown	unknown	gnl\|CDD\|237838
NZ_CP023141.1\|WP_167385388.1\|4205190_4207356_+\|type-I-secretion-system-permease/ATPase	unknown	unknown	gnl\|CDD\|273831
NZ_CP023141.1\|WP_005298749.1\|4181642_4182011_-\|arsenite-efflux-transporter-metallochaperone-ArsD	unknown	unknown	gnl\|CDD\|377741
NZ_CP023141.1\|WP_095593151.1\|4209852_4210821_-\|glucokinase	unknown	unknown	gnl\|CDD\|234716
NZ_CP023141.1\|WP_095593145.1\|4182576_4182885_+\|DUF134-domain-containing-protein	unknown	unknown	gnl\|CDD\|224261
NZ_CP023141.1\|WP_010634639.1\|4200557_4201019_-\|RTX-toxin-activating-lysine-acyltransferase-RtxC	unknown	unknown	gnl\|CDD\|367187
NZ_CP023141.1\|WP_167385387.1\|4178184_4178610_-\|glutaredoxin-dependent-arsenate-reductase	unknown	unknown	gnl\|CDD\|182200
NZ_CP023141.1\|WP_065018234.1\|4203829_4205194_+\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902
NZ_CP023141.1\|WP_026139305.1\|4201039_4201369_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023141.1\|WP_095593144.1\|4179839_4181603_-\|arsenical-pump-driving-ATPase	unknown	unknown	gnl\|CDD\|275109

Protein	Function_ID	Function_description	E-value
NZ_CP023141.1\|WP_005298747.1\|4182015_4182384_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|378968	pfam12840, HTH_20, Helix-turn-helix domain. This domain represents a DNA-binding Helix-turn-helix domain found in transcriptional regulatory proteins.	4.31162e-12
NZ_CP023141.1\|WP_024942930.1\|4183634_4184726_-\|HD-GYP-domain-containing-protein	gnl\|CDD\|225971	COG3437, COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms].	1.00923e-61
NZ_CP023141.1\|WP_095593143.1\|4178673_4179738_-\|ACR3-family-arsenite-efflux-transporter	gnl\|CDD\|213563	TIGR00832, Uncharacterized_transporter_slr0944, arsenical-resistance protein. The Arsenical Resistance-3 (ACR3) Family (TC 2.A.59) The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport. [Cellular processes, Detoxification, Transport and binding proteins, Anions].	8.53976e-129
NZ_CP023141.1\|WP_005298732.1\|4211170_4212025_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|183082	PRK11302, PRK11302, DNA-binding transcriptional regulator HexR; Provisional.	0
NZ_CP023141.1\|WP_010634629.1\|4177295_4178072_-\|hypothetical-protein	gnl\|CDD\|211400	cd11524, SYLF, The SYLF domain (also called DUF500), a novel lipid-binding module. The SYLF domain is named after SH3YL1, Ysc84p/Lsb4p, Lsb3p, and plant FYVE, which are proteins that contain it. It is also called DUF500 and is highly conserved from bacteria to mammals. Some members, such as SH3YL1, Ysc84p, and Lsb3p, which represent the best characterized members of the family, also contain an SH3 domain, while family members from plants and stramenopiles also contain a FYVE zinc finger domain. Other members only contain a stand-alone SYLF domain. The SYLF domain of SH3YL1 binds phosphoinositides with high affinity, while the N-terminal SYLF domains of both Ysc84p and Lsb3p have been shown to bind and bundle actin filaments, as well as bind liposomes with high affinity.	9.62177e-09
NZ_CP023141.1\|WP_010634645.1\|4207483_4208158_+\|response-regulator-transcription-factor	gnl\|CDD\|182755	PRK10816, PRK10816, two-component system response regulator PhoP.	3.94292e-81
NZ_CP023141.1\|WP_005298729.1\|4212188_4213628_+\|pyruvate-kinase	gnl\|CDD\|235619	PRK05826, PRK05826, pyruvate kinase; Provisional.	0
NZ_CP023141.1\|WP_095593149.1\|4201745_4203833_+\|type-I-secretion-system-permease/ATPase	gnl\|CDD\|273831	TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking].	0
NZ_CP023141.1\|WP_095593146.1\|4182881_4183421_+\|NifB/NifX-family-molybdenum-iron-cluster-binding-protein	gnl\|CDD\|376832	pfam02579, Nitro_FeMo-Co, Dinitrogenase iron-molybdenum cofactor. This family contains several NIF (B, Y and X) proteins which are iron-molybdenum cofactors (FeMo-co) in the dinitrogenase enzyme which catalyzes the reduction of dinitrogen to ammonium. Dinitrogenase is a hetero-tetrameric (alpha(2)beta(2)) enzyme which contains the iron-molybdenum cofactor (FeMo-co) at its active site.	5.90266e-08
NZ_CP023141.1\|WP_010634637.1\|4184996_4186325_+\|30S-ribosomal-protein-S12-methylthiotransferase-RimO	gnl\|CDD\|237838	PRK14862, rimO, 30S ribosomal protein S12 methylthiotransferase RimO.	0
NZ_CP023141.1\|WP_167385388.1\|4205190_4207356_+\|type-I-secretion-system-permease/ATPase	gnl\|CDD\|273831	TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking].	0
NZ_CP023141.1\|WP_005298749.1\|4181642_4182011_-\|arsenite-efflux-transporter-metallochaperone-ArsD	gnl\|CDD\|377741	pfam06953, ArsD, Arsenical resistance operon trans-acting repressor ArsD. This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs.	2.80401e-59
NZ_CP023141.1\|WP_095593151.1\|4209852_4210821_-\|glucokinase	gnl\|CDD\|234716	PRK00292, glk, glucokinase; Provisional.	0
NZ_CP023141.1\|WP_095593145.1\|4182576_4182885_+\|DUF134-domain-containing-protein	gnl\|CDD\|224261	COG1342, COG1342, Predicted DNA-binding proteins [General function prediction only].	1.70681e-35
NZ_CP023141.1\|WP_010634639.1\|4200557_4201019_-\|RTX-toxin-activating-lysine-acyltransferase-RtxC	gnl\|CDD\|367187	pfam02794, HlyC, RTX toxin acyltransferase family. Members of this family are enzymes EC:2.3.1.-. involved in fatty acylation of the protoxins (HlyA) at lysine residues, thereby converting them to the active toxin. Acyl-acyl carrier protein (ACP) is the essential acyl donor. This family show a number of conserved residues that are possible candidates for participation in acyl transfer. Site-directed mutagenesis of the single conserved histidine residue in Escherichia coli HlyC resulted in complete inactivation of the enzyme.	1.1123e-54
NZ_CP023141.1\|WP_167385387.1\|4178184_4178610_-\|glutaredoxin-dependent-arsenate-reductase	gnl\|CDD\|182200	PRK10026, PRK10026, arsenate reductase (glutaredoxin).	1.16967e-90
NZ_CP023141.1\|WP_065018234.1\|4203829_4205194_+\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	7.85054e-123
NZ_CP023141.1\|WP_167385389.1\|4208157_4209540_+\|GHKL-domain-containing-protein	gnl\|CDD\|182754	PRK10815, PRK10815, two-component system sensor histidine kinase PhoQ.	1.06697e-68
NZ_CP023141.1\|WP_095593144.1\|4179839_4181603_-\|arsenical-pump-driving-ATPase	gnl\|CDD\|275109	TIGR04291, Arsenical_pump-driving_ATPase, arsenical pump-driving ATPase. The broader family (TIGR00345) to which the current family belongs consists of transport-energizing ATPases, including to TRC40/GET3 family involved in post-translational insertion of protein C-terminal transmembrane anchors into membranes from the cyotosolic face. This family, however, is restricted to ATPases that energize pumps that export arsenite (or antimonite).	0

>NZ_CP023141.1|WP_010634637.1|4184996_4186325_+|30S-ribosomal-protein-S12-methylthiotransferase-RimO
MSNTKQAPKVGFVSLGCPKNLVDSERILTQLRTEGYDVVPSYDDAELVVVNTCGFIDSAVQESLEAIGEALAENGKVIVTGCLGAKENQIREIHPKVLEITGPHAYEEVLGHVHKYVEKPTHNPFTSLVPAQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGEVLAEAKRLKEAGVKEILVISQDTSAYGVDVKHRTGFYDGMPVKTSMVALCEELAKLGMWVRLHYVYPYPHVDDVIPLMRDGKVLPYLDIPLQHASPRILKLMKRPGTVERTLERIQKWREICPEITLRSTFIVGFPGETEEEFQMLLDFIDKAELDRVGCFKYSPVEGAKANELPDPVPAEVQEERFQRFMELQQQVSIRKLARKVGKEMLVLIDEVDEEGATGRSAADAPEIDGLVYLNGETGLKPGDMVKVRIDEADEYDLWASLID
>NZ_CP023141.1|WP_024942930.1|4183634_4184726_-|HD-GYP-domain-containing-protein
MESSFGEKVQNVHATLRQRFDKLSRVAVAIYDQQTDKLKTFAHSTEGGSPLLQYEVKLSEVPSLRYLAERQQPRVLDTLGSLQGSPAEHSRKLLAAGYESSYTEPLLFNSRLFGFLFCDAREPGYFDAAIRGELAAYAQILAAIIAVEFFSIQTLNGALTTAREFSRYRDEETANHLHRMSGYSRLIAREVAAHYPLNDEEVEFIHLFSELHDIGKIAVPDAILLKPGKLTPEEYAVMKIHPLKGREMIALMIKEFGLDGIHHTDMLKNIIAYHHERFDGQGYPEGLAGQAIPLEARIVTVADVFDALTSERPYKQAWPFETAFEYLKTHAGSQFDPVCVAAALRSKEAFRAIHQQYRDPAIT
>NZ_CP023141.1|WP_095593146.1|4182881_4183421_+|NifB/NifX-family-molybdenum-iron-cluster-binding-protein
MNQNVNTAAVPGNHAILLSRGRPSAHVSRAEQLQIVSPAGEVLATMSNPANGEGCRGKQALLATLQAHAVTQVLVRNIGEHMLGRLLDAGISVWQYRSAHLDLSAAHFQPLTDASQGSPSRRKASKASKASKAGNLVKGIRPSCNGRKEKQIGRESGCHQAEQCGCNHQQGDEPCHTCC
>NZ_CP023141.1|WP_095593145.1|4182576_4182885_+|DUF134-domain-containing-protein
MPRPKIARRICGRPANSCFKPNGVPMHELEQVALADDEFEALRLVDLEGMQQQEAARLMGVSRQTLANTLKRARYKVVECLSLGKALLMQPDVPQPGGETAQ
>NZ_CP023141.1|WP_005298747.1|4182015_4182384_-|helix-turn-helix-transcriptional-regulator
MNKETATKVFESLASGIRLDVWRLLVKAGLDGRVAGELAGELDIAPNTLSFHLKAMLNAGLLSVEQEGRFLRYRANIPLMLDLIGYLTEECCAGHPEACGMMRAESTCSPHVLPAQPCCHKE
>NZ_CP023141.1|WP_005298749.1|4181642_4182011_-|arsenite-efflux-transporter-metallochaperone-ArsD
MSVIQIFDPALCCASGVCGTEVDQALVTFAADLAWAREQGVAIERFNLAQQPLQFAETPAVSAFLTHAGEEGLPLVLVEGQVVLTGRYPSRGELARYAGLPAPQATIKGIVKAACRPGSGCC
>NZ_CP023141.1|WP_095593144.1|4179839_4181603_-|arsenical-pump-driving-ATPase
MYHFMTNPPPFLFFTGKGGVGKTSLACASAVALCDAGKRVLLVSTDPASNVGQVFATDIGNRITAIAAVPGLSALEIDPPAAAKAYRERIVGPVRGKLPEHVVRSIEEQLSGACTTEIAAFDEFTALLTDPALRSEYDHILFDTAPTGHTIRLLQLPGAWSEFLAQGKGDASCLGPLAGLEKQRSQYAEAVAALADGVRTRLVLVARAQHSTLREVARTHEELAAIGLANQQLVINGLFPEDAIAGDTLAQAIWRREQQALADMPQGIKGLARDQVPLLATNLVGLDSLRQLLQPQDAGGQAPLATSAHLPAQPELSSLVDELAADGHGLIMLMGKGGVGKTTLAAAVAVELASRGLPVHLTTSDPAAHLGETLAGSLPHLEVSRIDPRAETERYRAQVLASKGAALDEQGRALLEEDLRSPCTEEIAVFQAFSRIIREAGKRFVVMDTAPTGHTLLLLDATGAYHREIARQMGNKGLHFTTPMMQLQDPKQTKVLIVTLPEPTPVQEAANLQADLRRAGIEPWAWLINHSLQQAAVSSPLLQLRAERQLPHVEAVERQHASRYAVVPLLAEEPVGADALRRLCQHH
>NZ_CP023141.1|WP_095593143.1|4178673_4179738_-|ACR3-family-arsenite-efflux-transporter
MSATCDAKSQPAIGFFERYLTAWVALCILVGIGLGQGLPDLFKAIGAMEVAKVNLPVGLLIWVMIIPMLLKIDFGALHQVKGHLKGIGVTLFINWLVKPFSMAFLGWLFIRVLFADWLPADQLDSYVAGLILLAAAPCTAMVFVWSRLTNGDPYFTLSQVAVNDLIMVFAFAPLVALLLGVSSIIVPWDTLLTSVVLYIVIPVIIAQLLRKALLKKGEAHFDGVMTRIQPWSVAALLLTLVLLFAFQGNAIIEQPLAIALLAVPILIQVLFNSGLAYWLNRKVGEKHSVACPSALIGASNFFELAVAAAISLFGFHSGAALATVVGVLIEVPVMLLVVRIVNASKPWYEAGLSR
>NZ_CP023141.1|WP_167385387.1|4178184_4178610_-|glutaredoxin-dependent-arsenate-reductase
MSAITIYHNPECGTSRNTLELIRNSGVEPTVIHYLETPPSRDELVALIAAMGMPVRELLRKNVPPYEALGLAEDRFSDDALIDAMLAHPILINRPIVVTPLGTKLCRPSEVVLDILPDQQKGAFAKEDGEQVVDEHGKRLR
>NZ_CP023141.1|WP_010634629.1|4177295_4178072_-|hypothetical-protein
MKIRFLVIATALALTSAPGLADWAKVKAAATELGNAVSDTSKEAWQSVTDFSKATWASVSQWGSEAFNTAGAWTDKSVATGKEWLAVADKKLDEMLEPKTADEARLALNTMADTALVRLFNEQPSAKLLFDKAYGYAVFDSRKFSLMLHTNQGAGVAVNRATGKHTYMKMFGAGLAAGLGGKFYQQVILFEDKARFDAFVSQGWEATSEVGAVAGKESAELTAKYNGGMAIYQIGEKGLLLDANISGSKYWVDKDLTR
>NZ_CP023141.1|WP_010634639.1|4200557_4201019_-|RTX-toxin-activating-lysine-acyltransferase-RtxC
MHLVLQPTEPNWQQKQHMLGGVMLLSQHSSLHRRYSVAEWQQRILPAFELNQFCYYEDSHGRPVAFCNWAFVSLSIRNTLLAAERELIREDWQSGDHIFIPEMIAPYGHARAVVSDLRRRIFLPWKGQRVCTVRGHVHAEHGQCVRRVQWFSI
>NZ_CP023141.1|WP_026139305.1|4201039_4201369_-|hypothetical-protein
MTEQFVQTVSSVNYNKGIFSLYFVGQDPLKMAQGVMAESDNELALKQTVHMPAAGFMYMVSMIKNMLEDPRMAAEFDKLIAAGLIPAAPADVQESAPAATAQAAPRKKK
>NZ_CP023141.1|WP_095593149.1|4201745_4203833_+|type-I-secretion-system-permease/ATPase
MTAHDESVLACLKIITGLLGCPPKDIDITPDEPFDIIIDRLQQQTDSRIRQRHIAPRKLAKQTLPLVLLSDSGSPFVLAQRQGEQALILDPAVGNPQVIDQQALLARWNGRVYQVRRQQSRFDIRWFIPAFLQQKRLLGEILLFSLVLQLLALISPLFFQVVMDKVLVHQAWSTLDVLVFGLLITALVEVCLRGLREYQYAHTANRIDIQLGLRMVQHLFALPLLYFKSRQVGAIVTRVQELNTIREFLTGTMFTLTVDVLFMFVFLAVMASLSGMLTLVILLSIPAYVLIAWWITPRMQQAVEQQFGHAAANTAFLNETVAGAETLKSLALEPRFVRRWDEQTSQMVTAGYRVQQLNNASQHGVMWLQKLVSAGVLWLGASEVISLQLTIGQLIAFNMMAGHVAQPLSRLVELWGQFIQTRIAVDKLGDMLNLPPEHQRDGAGQVSAGAIQLERVRFRYQPDAPLIIDDLSLTIAPGETLGVVGGSGSGKSTLARLLLRLYQPEQGEIFIDGQPIRQLPLHHLRQQMGVVLQENHLFNKSVRDNIAQSVPHASLDQIIRAATLAGAHDFILRLPLGYDTVLAEGGSSLSGGQRQRLAIARTLLADPRILIFDEATSALDDESQALIQRNMRQIACGRTVITIAHRLSTVRQCDRIIVLQRGKIVEQGDHASLLARGEHYARLWRLQQDLHEETP
>NZ_CP023141.1|WP_065018234.1|4203829_4205194_+|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit
MNLRTWLARFRQPRPPRQADTHYGFLPAHLALAETPPSPFARITALTLSAGVLLTLLWACWGELDIQATASGRLLVLGRSQLIQSYEQARVVTIHVEDGQVVAADAPLLTLNTLGVSQDLSRLRQQQAFQYQTLIRYQALYREQTPDQHPDYARLTPEQQQALVENYQSELHEFHSTLSNLQAELGVNQANQAARRGDMASLTTLLANIRPRLQARQTLSQSQAISRVEYLEQEKELLETQRQLAQQRAELEVLQSQQQSLQERLAGFKAQKQREWIEKRQQARLQLTAIEQELAKLREREHLEVIRAPVAGTVQQLAIHTQGAVVQPAQQLLVIVPNEGVQLAEVKILNKDIGFVHEGQAVSIKVDAFPYTRYGTIDGELVSVSRDATADEQLGLVFAARVKLSQGEMLIDNQPVRLTPGMSVVAEIKTDRRRVIDYLLSPIREYQAEALRER
>NZ_CP023141.1|WP_167385388.1|4205190_4207356_+|type-I-secretion-system-permease/ATPase
MKMDQTHAADRAPVANGTLAALTHAAHQLMLTADADQLAHALGCDLAPPDLTVREAAAHLGLRSALSQGPGCPLAALPLPALLKRDGRWYTITAITPAGWQLFDPASGTSSLQPLPSQAEAAQWHFLLLAQQDLTPAEVKFGLGWFSPAVLRQQKQLRDVFCFAILLQLIALASPLLFENIIDKVLVGRSLGSLHVLALAMVALACAEPLYGFLRGQVFGHLANQVNAELSGKLYRHLVGLPIGYFKTRQTGQIIARVKEMAQIRQFLTGSTLMLVLDLLFILLFVGVMSHYAPRLTACVLGSLLIYFLLWLLIGPLVRKKVEAEYQADADATSFLTEAVTGIETIKTTATERRFYQEWQRLLARQLRRGFQAKKVGLAAAQGIDLVQKLTAALLLWLGVGEVLNGRMSPGELVAFNMLAGHVTQPVLRLAQVWQDFQHTLIALRRVGDILDEAPEHGNHGLASVPALQGAIEFRHIRFRYQPDAPEVLANLSFAIEPGQFIGITGPSGCGKSTLTRLLQRLYVPQHGQVLVDNMDLAIADPVSLRRNMSVVLQESVLFSGTIADNIRICRPDATQAELEQAAQLAGALTFIRELPQGFEQQVGEKGARLSGGQRQRIALARALLVNPRILLLDEATSALDYESEAAIMANMAAIRRGRTLISIAHRLNTLREADRILVMEAGQIVESGSHHELLAREGLYARLWRQQTSDDELPAMARTG
>NZ_CP023141.1|WP_010634645.1|4207483_4208158_+|response-regulator-transcription-factor
MKILLVEDDKLLNHHLTTLLTEAQNQVHSTESAQVALHYAADYPIDVAIIDLGLPDMDGLQLIRQLREQQIPFPIIVLTARGNWQDKVEGLEAGADDYLVKPFQKDELLARLNALVRRSAGFISPRVKAGDYELDLSRKELTIAGTPVVLTSFEYLILEYLMRNARQVVSKQQLLDQLYGDGEGDPNTIEVMVSRLRKKLDPEGLIQPISTIRRQGYIFNLSCS
>NZ_CP023141.1|WP_167385389.1|4208157_4209540_+|GHKL-domain-containing-protein
MGFRLPRPMRLIRRSLHIKLMLSAMLVIALIMSFSVYILYLGHTDEQAQKASTRMQENLSKLFSSKMPDAQASTDLGRLTPDAIDPNLDTLICRADGQLSWSSLHMPEVIQVKDSICDDLMKYLGGLDQDYFFKRLTIKNGESYFIYSLRFLRNHGDGPTTYYVVMVDSAKRYLLQTRDYLYQCIRQALLAYALLGALLLLTSFWSLGSLRTMARQIDEIRAGKREALSNDYERELTPLTESVNQLLENERQQTQRYQHALNDLAHSLKTRLALIQMTAQEVKLGRDIHDNINEQILTMDQIIQYQLRRAVTGRKRLASKGTEPVPLIEKLLASLAKVYRHKKLQTRFKFDDDVFFAGEQGDLMELMGNLLDNAFKFAISEIKVTVSRRLDRLRIEIEDDGPGIDPGKSQQIFQRGVRADSSPGQGIGLAVVTEIVHSYGGQIMVDESPLGGARFTLDLP
>NZ_CP023141.1|WP_095593151.1|4209852_4210821_-|glucokinase
MQHTHALVGDVGGTNARLALCELATGTISRAKTYSGLAHPTLEAVVRLYLDEHKVQVGEACIAIACPINGDWVAMTNHSWEFSISEMQANLGLTRLQVINDFTAVSMAVPVLEESDRIQLGGAAPVAGKPIAIYGAGTGLGVAHLVQAGEQWLSLPGEGGHVDFAANSEEEDAVLQVMRAELGHVSAERLLSGPGLVNIYRGLVKSDGREPQAFEPKDITERALAGECLDCRRTLSLFCVLMGRFAGNLALNMGTFGGVYIAGGIVPRLQEFFIGSGFRVAFEDKGRFKSYLKDIPVFLITHEGPGLLGAGAYLRQSLGIKL
>NZ_CP023141.1|WP_005298732.1|4211170_4212025_+|MurR/RpiR-family-transcriptional-regulator
MNTLDKITNNLESFSKSERKVAEVILASPQTAIHSSIATLAKMADVSEPTVNRFCRRLDTKGFPDFKLHLAQSLANGTPYVNRHVEAEDGPDTYTAKIFESTMACLDAAKNSLDISAINRCVDILTQSKKISFFGLGASSAVARDAQNKFFRFNIPVVSFDDIVMMRMSCINSSEGDVVVLISHTGRTKALVEIAALARENDATVIGMTAKDSPLARECNLVLSMDVPEDTDVYMPMASRIAQLALVDVLATGFTLRRGMKFRENLKKVKEGLRESRFDTPHSS
>NZ_CP023141.1|WP_005298729.1|4212188_4213628_+|pyruvate-kinase
MPRRTKIVTTLGPATDREGILEGIIRAGADMVRMNFSHGTAEDHILRANQVRDIAAKLGRHVAIMGDLQGPKIRVSTFKDGKIYLAIGDKFILDAALGKGEGCQEQVGIDYKSLPNDVVPGDILLLDDGRVQLKVEQVEGTRIHTTVTVAGPLSNNKGINKKGGGLSAPALTEKDKEDIKTAARMNVDYLAVSFPRCGDDLRYARELAREAGSNAKIVAKVERAETVATDEAMEDIILGSDAVMVARGDLGVEIGDPELVGVQKKLIRHSRRLNRVVITATQMMESMINAPLPTRAEVMDVANAVLDGTDAVMLSAETAAGQFPIETVTSMASVCVGAEKHPSLNVSNHRMSYTFTSVEEAVAMSTMYAANHLEGVKAIVALTESGTTPLLMSRISSGLPIFALSPHNKTLAWTNLYRGVTPVLFDGDETKPVYEVCRDALDVLKAKGLLQSGDMVLLTHGDKMETVGSTNTCKVMMVE

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Crispr_ID: NZ_CP023141_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023141_10

4640056-4640153

Orphan

Consensus_repeat	Method
AATACAAGCGCATCGCCAAGTAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP023141_10

>merge|NZ_CP023141|10|4640056-4640153|CRISPRCasFinder
AATACAAGCGCATCGCCAAGTAACAGGGCAAACAAGTGCGGCTTCTGCATCAGCCGCACCGTTCCCACCACGACGAGTACAAGCGCATCGCCAAGTAA

>NZ_CP023141|10|9|4640056-4640153|CRISPRCasFinder
AATACAAGCGCATCGCCAAGTAA	CAGGGCAAACAAGTGCGGCTTCTGCATCAGCCGCACCGTTCCCACCACGACG
AGTACAAGCGCATCGCCAAGTAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023141.1\|WP_005304162.1\|4649709_4650522_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP023141.1\|WP_167385401.1\|4637026_4637536_-\|YgjV-family-protein	unknown	unknown	gnl\|CDD\|378474
NZ_CP023141.1\|WP_095593348.1\|4642263_4643094_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP023141.1\|WP_095593343.1\|4630917_4631706_+\|heme-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|237422
NZ_CP023141.1\|WP_011704892.1\|4634740_4634929_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023141.1\|WP_005304159.1\|4647426_4648725_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP023141.1\|WP_043171015.1\|4637593_4638169_-\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NZ_CP023141.1\|WP_095593344.1\|4631756_4632572_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|366132
NZ_CP023141.1\|WP_005304122.1\|4635136_4635991_+\|lytic-transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|381594
NZ_CP023141.1\|WP_095593345.1\|4632559_4633186_-\|YitT-family-protein	unknown	unknown	gnl\|CDD\|224203
NZ_CP023141.1\|WP_167385400.1\|4636100_4636937_+\|5'-methylthioadenosine-nucleosidase	unknown	unknown	gnl\|CDD\|350159
NZ_CP023141.1\|WP_095593351.1\|4644963_4647396_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_CP023141.1\|WP_095593347.1\|4640247_4640583_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023141.1\|WP_095593346.1\|4633509_4634529_+\|NAD-dependent-epimerase	unknown	unknown	gnl\|CDD\|187563
NZ_CP023141.1\|WP_005304160.1\|4648724_4649720_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP023141.1\|WP_095593350.1\|4643778_4644789_-\|phosphotransferase	unknown	unknown	gnl\|CDD\|225719
NZ_CP023141.1\|WP_095593349.1\|4643113_4643782_-\|nucleotidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|133044
NZ_CP023141.1\|WP_167385399.1\|4629871_4630903_+\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	unknown	unknown	gnl\|CDD\|376439
NZ_CP023141.1\|WP_005304142.1\|4640843_4642187_+\|NCS2-family-permease	unknown	unknown	gnl\|CDD\|225161
NZ_CP023141.1\|WP_005304166.1\|4650526_4650889_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098

Protein	Function_ID	Function_description	E-value
NZ_CP023141.1\|WP_167385401.1\|4637026_4637536_-\|YgjV-family-protein	gnl\|CDD\|378474	pfam10688, Imp-YgjV, Bacterial inner membrane protein. This is a family of inner membrane proteins. Many of the members are YgjV protein.	2.15178e-42
NZ_CP023141.1\|WP_095593348.1\|4642263_4643094_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.66066e-141
NZ_CP023141.1\|WP_095593343.1\|4630917_4631706_+\|heme-ABC-transporter-ATP-binding-protein	gnl\|CDD\|237422	PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.	7.04534e-123
NZ_CP023141.1\|WP_005304160.1\|4648724_4649720_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP023141.1\|WP_005304159.1\|4647426_4648725_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	2.75892e-162
NZ_CP023141.1\|WP_043171015.1\|4637593_4638169_-\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	4.76979e-16
NZ_CP023141.1\|WP_095593344.1\|4631756_4632572_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|366132	pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3.	2.73249e-18
NZ_CP023141.1\|WP_005304122.1\|4635136_4635991_+\|lytic-transglycosylase-domain-containing-protein	gnl\|CDD\|381594	cd00254, LT-like, lytic transglycosylase(LT)-like domain. Members include the soluble and insoluble membrane-bound LTs in bacteria and LTs in bacteriophage lambda. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.	1.77612e-39
NZ_CP023141.1\|WP_095593345.1\|4632559_4633186_-\|YitT-family-protein	gnl\|CDD\|224203	COG1284, COG1284, Uncharacterized conserved protein [Function unknown].	5.29452e-39
NZ_CP023141.1\|WP_167385400.1\|4636100_4636937_+\|5'-methylthioadenosine-nucleosidase	gnl\|CDD\|350159	cd09008, MTAN, 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidases. This subfamily includes both bacterial and plant 5'-methylthioadenosine/S-adenosylhomocysteine (MTA/SAH) nucleosidases (MTANs): bacterial MTANs show comparable efficiency in hydrolyzing MTA and SAH, while plant enzymes are highly specific for MTA and are unable to metabolize SAH or show significantly reduced activity towards SAH. MTAN is involved in methionine and S-adenosyl-methionine recycling, polyamine biosynthesis, and bacterial quorum sensing. This subfamily belongs to the nucleoside phosphorylase-I (NP-I) family, whose members accept a range of purine nucleosides as well as the pyrimidine nucleoside uridine. The NP-1 family includes phosphorolytic nucleosidases, such as purine nucleoside phosphorylase (PNPs, EC. 2.4.2.1), uridine phosphorylase (UP, EC 2.4.2.3), and 5'-deoxy-5'-methylthioadenosine phosphorylase (MTAP, EC 2.4.2.28), and hydrolytic nucleosidases, such as AMP nucleosidase (AMN, EC 3.2.2.4), and 5'-methylthioadenosine/S-adenosylhomocysteine (MTA/SAH) nucleosidase (MTAN, EC 3.2.2.16). The NP-I family is distinct from nucleoside phosphorylase-II, which belongs to a different structural family.	1.6177e-62
NZ_CP023141.1\|WP_095593351.1\|4644963_4647396_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_CP023141.1\|WP_095593350.1\|4643778_4644789_-\|phosphotransferase	gnl\|CDD\|225719	COG3178, COG3178, Predicted phosphotransferase related to Ser/Thr protein kinases [General function prediction only].	1.84727e-72
NZ_CP023141.1\|WP_095593346.1\|4633509_4634529_+\|NAD-dependent-epimerase	gnl\|CDD\|187563	cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimerase, extended (e) SDRs. This subgroup contains UDP-D-glucuronic acid 4-epimerase, an extended SDR, which catalyzes the conversion of UDP-alpha-D-glucuronic acid to UDP-alpha-D-galacturonic acid. This group has the SDR's canonical catalytic tetrad and the TGxxGxxG NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	0
NZ_CP023141.1\|WP_005304162.1\|4649709_4650522_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	2.78545e-147
NZ_CP023141.1\|WP_095593349.1\|4643113_4643782_-\|nucleotidyltransferase-family-protein	gnl\|CDD\|133044	cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.	2.92669e-80
NZ_CP023141.1\|WP_167385399.1\|4629871_4630903_+\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	6.54622e-79
NZ_CP023141.1\|WP_005304142.1\|4640843_4642187_+\|NCS2-family-permease	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	1.01055e-172
NZ_CP023141.1\|WP_005304166.1\|4650526_4650889_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	3.20202e-66

>NZ_CP023141.1|WP_043171015.1|4637593_4638169_-|Crp/Fnr-family-transcriptional-regulator
MTSLPSAPSLAATLVAMGLAPAIGEPLAARLPRLTLQPGQPLLAQGAMQESAFYIERGIARACHYARDGQERCKEFYFEGELCLLYDSWLSGSPARYQLEAVTALQLVRVPLALLDEPAWQPVCMALLRQQLCYKECKEAFLLLHSPEERYRELCRTFPHWPARLTQVQLANYIGISPVTLSRIRRRINTG
>NZ_CP023141.1|WP_167385401.1|4637026_4637536_-|YgjV-family-protein
MMSLFLWSQLVVSLALLLDLLSFQLRARRAILACLALSCALNGAHFALLGQWSAALLLWLASLRFVVSMLATRRLLMWLFMGLSCLAVLATYQGPLVLLGLLASLLQTRAAFCPDDRLLRRWMLLGTLCWLVNNLLVGSPVAALMEGLFLVSNLVGYYRHYGRKVLPAG
>NZ_CP023141.1|WP_167385400.1|4636100_4636937_+|5'-methylthioadenosine-nucleosidase
MNFIKRCSRLLTLFALFSSAVVAANPAPAPILIQGAMDVEVETLVAALKEKQELTVGAWTYWQGTLSGYPVVVSRTEVGLANAAAATTLAMERFRPRFVINQGTAGGHDPALHRGDIVIGTKSFNMGAYRSDLTPAEQGVDPSKWHNFEVTMRLRDNGKLVEHTAFAGDPELVGRALGMADGYRHGRVVPGIIGTADEWNRQVARINWLHQTYQTAAEEMETSSAALVAEAYKVPFVGIRVLSNSDLHGEEFDPQTAIHCQQFVIDYAKALISGFNKA
>NZ_CP023141.1|WP_005304122.1|4635136_4635991_+|lytic-transglycosylase-domain-containing-protein
MSSLSENRLFLLLFLSLLLAGNVQAAAQSRDFRQAPKALSALKQGQQAQSQGNLTQAIHFYCAAATTGNPEGYFRIGRLLATGPGSVRNPRMANAYLAMAIRLGNQQAIRYYNSRVGNAVMGDQCGSGVGGSGGYFAAIPTTPFNLEAYLARQSPAKQKLANMLRHAAKRHRIDERLVLAIAIAESNLDSRAVSPKNAQGLMQLIPETQQRFGVTRPFDPEQNIKGGVAYLKWLHTHFDGNWTLMSAAYNAGEKSVEQYGGIPPYQETQQYVRRVLYFAGHKQP
>NZ_CP023141.1|WP_011704892.1|4634740_4634929_+|hypothetical-protein
MIRILLLLGAALSAYGLQQSHTLAPLLSLLGLLSLWVASEIRLMYRQLPAAEPDEQPYHLDV
>NZ_CP023141.1|WP_095593346.1|4633509_4634529_+|NAD-dependent-epimerase
MKYLVTGAAGFIGFHVARRLCEAGHQVVGLDNLNDYYEVSLKEARLAMLTPFPHFRFVEGELADRAGMAALFAEGQFERVIHLGAQAGVRHSLENPFAYSESNLTGMLTVLEGCRQHDIQHLIYASSSSVYGMGEQLPFSADQQVDHPVSLYAATKKSGELMAHAYSALYGLPTTGLRFFTVYGPWGRPDMAIARFTHAILAGEPIDVYNQGDLSRDFTFIDDIVEGILAVAELPPRPNPHWHAGEQSPAESAAPYRILNIGHGQPVRLLDFIEALEQALDKPAIKRMLPMQAGDMHATWADSEPLHTLTGLRPATSIEEGVAAFVRWYLDYYQPAELV
>NZ_CP023141.1|WP_095593345.1|4632559_4633186_-|YitT-family-protein
MDNTPVSAQSARTAHPLYEDIIALLTAAGFVSLGIFLFHQVGLLTGGTAGLALLLQQVTGLSFGLLFFGMNLPFYALAWLRMGPRFTLNTFVSVATVSFMTDHLNAVLQIGKIEPVYAALIGGTLIGMGLLIMFRHKSSLGGFNILALFIQERFGIRAGKLQMGLDCTIVIASFFVVQPWILALSVVAAIICNLVLTLNHKPGRYQLA
>NZ_CP023141.1|WP_095593344.1|4631756_4632572_+|transporter-substrate-binding-domain-containing-protein
MPARLLLLWLLSPLCVAAPLRLVVQEFAPYSFMGSDNQPTGAMVDMVKEACSYWPEGCQITLRPNLRARKELDLGEVDGMFPLAWSDARAKTLSYSVPLCKASWGIFAHVDEIDAPLTLARLGHARIGVTRGSFSETLLRQLDDTLHQQGIPPMQLELNVNDDYANLLKIERQGRYNLYFSNLDVALYRLNLSGASKIRLWQKSHEANYYIAFNRQRMSEAQLAAFNQILTRLEAQGNLLRHRVHWGLSSPLSDHRLHTLFPPGSQRPHAN
>NZ_CP023141.1|WP_095593343.1|4630917_4631706_+|heme-ABC-transporter-ATP-binding-protein
MSASSTLLHCRQLSLSRGGRPILDRLDLSLQAGSLTALLGPNGAGKSSLLKCLTGELEHEGEIDLFGRERREWAGNELAHRVGVLPQSSSLNFPFLCEEVVAMGRLPHSEPASRRDEIVRAAMTHAGVDHLAGRLYPGLSGGERQRVQFARVLAQIWQAPEEPQQARLLLLDEPTSALDLKYQHQLLTMARALAARHTAVLVVLHDLNLAARYADRLVMLEQGRVMADGPPREVLTPDLIDRLYDYPARVITDPQGMYTVVL
>NZ_CP023141.1|WP_167385399.1|4629871_4630903_+|iron-chelate-uptake-ABC-transporter-family-permease-subunit
MMRLPLPWLLCLTGGALALLLVGSLATGPMALSFGESLRALFAGQGSGIEAHKLLIVQEIRLPRTLLCIAVGGILGLCGAVMQGLFRNPLADPGIIGVSGGAALGAALAIVLLAPLGQQWQSLLGIGLLPLLAFLGGALTTTLVYLLGTREGGTSVTVMLLAGVAVTALSGAVIGLLTYLADDQMLRNLSLWQMGSLAAGKPVDVTLALLTLVALLILFLRDANPLNALLLGEGEARHLGIQVQSLKRRLILLTAAGVGVAVAVAGMIGFVGLVVPHLVRLLAGPNHVRLLPLSALLGAALLLGADMLARTLLAPAEMPVGIITALLGAPFFIWLLVKGRRTL
>NZ_CP023141.1|WP_095593347.1|4640247_4640583_+|hypothetical-protein
MTTQPTTEKKLTIQIRVEPGCLGPDGKAHIETFCAAAVRIFAAVEPELVSWTLLPRYDKQLPEQEFFIDGRKLSEEQASLFLRRMGRELGEVQDKLDSVLAQLVERYFKTL
>NZ_CP023141.1|WP_005304142.1|4640843_4642187_+|NCS2-family-permease
MNQPHQAPAQAAGQGLLERLFALKGHGTNARTEVIAGITTFLTMVYIVFVNPQILSAAGMDTQAVFVTTCLIAGIGSILMGLLANLPIALAPAMGLNAFFAFVVVAGMGYSWQVGMGTIFWGAMGLLILTLLRVRYWLIANIPLTLRVGITAGIGLLIALLGLHNAGIVVASPATMVTVGNLTSLPCLLGLLGFFLICIFSARGVHSAVLIAIVVTTTLGWLFGDVTFKGFVSMPPSIEPVFGQLDLMGSLDISLAGIIFSFMLVNLFDSSGTLIGVTNRAKLADDKGHFPRMKQALLVDSASSVGGAFMGTSSVTAFIESSSGVAVGGRTGLTAIVVGLLFLLAIFFSPVAAMVPAYAAAGALIYVGVLMCSELTRVKWEDLTEAVPAFMTAVMMPFSFSITEGIAVGFISYCVMKAGTGRWREINPCVLVVALLFVLKFVWVDSH
>NZ_CP023141.1|WP_095593348.1|4642263_4643094_-|co-chaperone-DjlA
MRIWGKVLGAFFGFLLGNIFGALLGLWIGHRFDRGMGLNFRRAPTQQQQAVFFHATFAVMGHIAKASGQVTEQEIRVASNLMDRMRLAGEQRARAQESFRQGKEADFPLRETLAEFRQASQGQRDILRFFLEVQLQAAFADGKVEASERAILHTIADELGFSRIELARILAMAEAQMNFFNRAHGGQYQNGGQGGQQYRQEAPSRDRLKDAYQLLGVSESDSEQEIKRAYRKEMSKHHPDKLAAKGLPPEMMEMAKEKTQEIQQAWEWIREARGIR
>NZ_CP023141.1|WP_095593349.1|4643113_4643782_-|nucleotidyltransferase-family-protein
MKAMILAAGRGERMRPLTDSLPKPLLAVGGKPLIVHHIEKLKAAGVTTLVINHAWLGHKLVEALGDGSALGVSIHWSAEESALETAGGIVQALPLLGSDPFLVINGDTWLDLDYRTLVSQPLGDQLAHLWLVPNPPQHPAGDFALEAGKVVDTPSLTFSGVGLYDPAAFAGLAAGARKLAPLLREWMVQGRVGGSLLAGEWRDIGTAQRLHELDDQLQGRTH
>NZ_CP023141.1|WP_095593350.1|4643778_4644789_-|phosphotransferase
MHDRDSLLLHWARRISGDASLQLTLISGDASFRRYHRGGGLIWVDANPKTEKNHEFVRNASALHTSGLLAPEVRAVDYEQGLLAVTDLGDTQLIGCLNADNVQAWYGKAIALLPRLGAVELDLEPFDSAFMARENSIFPEWLLGHHLQLTLSDEEQLLLAETFACLTENNLAQPQGVMHRDFHSRNLMVCGCETPDESELAVIDFQDMVIGPLSYDLVSLLKDCYVRWPDTVIEQGMRLGFDTLQQAKLLGGLDYAAFRRGADLTGMQRHLKAAGIFTRLYHRDGKSGYLKDIPRTLGYVVDVCRSHGAAYPVLARFGQWLEQVVLPGLARSGVTS
>NZ_CP023141.1|WP_095593351.1|4644963_4647396_+|LPS-assembly-protein-LptD
MTKRTLGYSYPIALTISLVPALTPAIVQAAPLTPPPATGILDGLCYDYVPKIEKLAPGTDANAQPVEVDADRLEAKQGGTAVYQGDVKVRQGVRKFDSDYAELDQKSRDVIAIGNIYYNDGQITVTSDKTLKSNLDTKNSELEEGKYQVHGSPVRGSADRVTMTNNNQNITLEGAQYTTCPPGQEVWTLKAGSIDIDQTEVFGEAWNASLWLYDYPVFYFPYINFPIKDERKTGLLYPGYTQSSKNGMDITQPFYWNIAPNYDATITSRFMDRRGLMEQVQFRYMPDPAHVGSLYFENLANDKQYDETPSLNQAMSDGHRYLLNANHTSLFADNAMRVSLDYTKVRDRDYNYFNDFSPKVGTQVENQLQQSLMAGYFQPNWNINTEVRTYQILLASAQQPHELMPRIDHNYYQQGSWYDLAWNTEITKFGYNNAQAIAQNQGGAYTGTRVYTAPTLTMPLINEAGYYLDSQYKLMYTRYDQEVPNNMSQTFVSRFTPAGANGVTLDEGIITRTLPSFRLKGGMTFERNQNWFGGDANQTLEPEFQYLYVPYKDQDNIGVYDSTTMRQDYYSLFSDRRYAGLDRISDSNRISIGLTSRVYDEVGDERIRLAVAQAFDFVAPRVKLYPSETLTTNTRSPLSFEGDAKINEQWFAHAGAQYDMDQSRLSSANSALEYRHEKLISQLNHRFVRDANYDLENRGQVTDLNQIGLLLTTPLNDQWHLYGGYYQELNQSVKSDRKVGLKYDSCCWSINFNLEWVNTPDNVTLRPTSERSLGIQFEMKGLGSVGTGTKGTSLDTEALPYIRPFNLRDQ
>NZ_CP023141.1|WP_005304159.1|4647426_4648725_+|peptidylprolyl-isomerase-SurA
MKKTLISLLTAGLFGAMSQGAFAAPELMDKVLAVVNKDVVLASQQEALVQKVKISAQENGQSLPDDATLRKQALDRLIQESLQLQLAERQGLKISDTQLEQAIQSIAADNKMTLDQLRAQLDREGLTYAQYREEVRREILMNEVRRNQVRRRINISEQEVKQVVDILAKQGQQQQQYHVGHIQVALPDNPSAEQLNAAKSKIERILAALKQGADFRKMAIAESSGPKALEGGDWGWMSPQEMPTLMAEAVQGAKKGDIVGPLRSGAGLHIIKVFDSKGQQQVVQTEVRARHILIKPSIILSEEKAKGMLDGILHDIKSGKASFASLAEKYSEDPGSAVQGGELGWSDPNVYVPEFRDMVNRLQPGQISEPFRTTHGWHIVQLEERRSQDATTKAQEQRAYQLIYNRRFTEESQAWLDELRDEAYIQIEGAGS
>NZ_CP023141.1|WP_005304160.1|4648724_4649720_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MTCRRLAITPGEPAGIGPDLVLQIAQQDWPHQLVVIADPALLRERAALLGLPVELLPYDAGQPAQPQRAGTLTVCPVPLGAAVIPGKLDEGNGAYVLATLQRACDGNMSGEFAAVVTGPVHKGIINQAGVSFSGHTEFFAQQSNTADVVMLLATEGLRVALATTHIPLAYVAMAITEDRLGKVIRILDADLKAKFGIAKPRIYVCGLNPHAGEGGHLGREEIDVIEPALAGLRQEGIDLVGPLPADTLFQEKYLKDADAVLAMYHDQGLPVLKYKGFGSSVNITLGLPFIRTSVDHGTALDLAGKGLADSGSLITAINHAIKMVEKKRYEQ
>NZ_CP023141.1|WP_005304162.1|4649709_4650522_+|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MSSKVHMGHTARKRFGQNFLHDRYVIDQIVAAINPQPGQNLVEIGPGLAALTEPVAAQMDKMTVVELDRDLAARLREHPTLKDKLTVIEADAMRFDFSTLMGEGKGPLRIFGNLPYNISTPLIFHLCEFADRVEDMHFMLQKEVVLRLAAGPGSKAYGRLSVMTQYYCQVVPVLEVGPGAFKPAPKVDSAVVRLIPHKNPTIVAKDIRCLNRVCTEGFGQRRKTIRNSFSNFITDAQLTELGIDGNLRPENLSLEQFVMIANWLADQPKA
>NZ_CP023141.1|WP_005304166.1|4650526_4650889_+|Co2+/Mg2+-efflux-protein-ApaG
MATPHILVRPYPSYVADSKDPYQFHYLIEIENLGPGPAQLLRRRWLITDANGKMLEVEGPGVVGEQPVIAPGETFRYQSGVPLATPLGVMEGSYTLQDESGQQFEVPIAPFTLAVPHIIN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP023141_9	9.5\|4198344\|26\|NZ_CP023141\|CRT	4198344-4198369	26	KT809302	Haloarcula californiae icosahedral virus 1, complete genome	29435-29460	3	0.885
NZ_CP023141_9	9.5\|4198344\|26\|NZ_CP023141\|CRT	4198344-4198369	26	NC_003903	Streptomyces coelicolor A3(2) plasmid SCP1, complete sequence	62386-62411	3	0.885
NZ_CP023141_9	9.5\|4198344\|26\|NZ_CP023141\|CRT	4198344-4198369	26	NC_003903	Streptomyces coelicolor A3(2) plasmid SCP1, complete sequence	293613-293638	3	0.885
NZ_CP023141_9	9.6\|4198401\|26\|NZ_CP023141\|CRT	4198401-4198426	26	NZ_CP050092	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b6, complete sequence	114483-114508	3	0.885
NZ_CP023141_9	9.1\|4198104\|26\|NZ_CP023141\|CRT	4198104-4198129	26	NZ_CP029356	Azospirillum sp. CFH 70021 plasmid unnamed1	613162-613187	4	0.846
NZ_CP023141_9	9.1\|4198104\|26\|NZ_CP023141\|CRT	4198104-4198129	26	NZ_CP032325	Azospirillum brasilense strain MTCC4035 plasmid p4, complete sequence	49555-49580	4	0.846
NZ_CP023141_9	9.1\|4198104\|26\|NZ_CP023141\|CRT	4198104-4198129	26	NZ_CP015319	Mesorhizobium amorphae CCNWGS0123 plasmid pM0123a	41244-41269	4	0.846
NZ_CP023141_9	9.1\|4198104\|26\|NZ_CP023141\|CRT	4198104-4198129	26	NZ_CP015322	Mesorhizobium amorphae CCNWGS0123 plasmid pM0123d, complete sequence	555172-555197	4	0.846
NZ_CP023141_9	9.1\|4198104\|26\|NZ_CP023141\|CRT	4198104-4198129	26	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	749292-749317	4	0.846
NZ_CP023141_9	9.1\|4198104\|26\|NZ_CP023141\|CRT	4198104-4198129	26	NZ_CP007796	Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence	641609-641634	4	0.846
NZ_CP023141_9	9.3\|4198218\|26\|NZ_CP023141\|CRT	4198218-4198243	26	MN693551	Marine virus AFVG_25M463, complete genome	4012-4037	4	0.846
NZ_CP023141_9	9.5\|4198344\|26\|NZ_CP023141\|CRT	4198344-4198369	26	MH509442	Mycobacterium phage Aminay, complete genome	49284-49309	4	0.846
NZ_CP023141_9	9.5\|4198344\|26\|NZ_CP023141\|CRT	4198344-4198369	26	NZ_CP015737	Shinella sp. HZN7 plasmid pShin-01, complete sequence	198252-198277	4	0.846
NZ_CP023141_9	9.5\|4198344\|26\|NZ_CP023141\|CRT	4198344-4198369	26	AP021850	Deinococcus grandis ATCC 43672 plasmid: pDEGR-1 DNA, complete genome	182668-182693	4	0.846
NZ_CP023141_9	9.5\|4198344\|26\|NZ_CP023141\|CRT	4198344-4198369	26	NC_017957	Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence	93336-93361	4	0.846
NZ_CP023141_9	9.5\|4198344\|26\|NZ_CP023141\|CRT	4198344-4198369	26	NC_047756	Caulobacter phage Sansa, complete genome	1504-1529	4	0.846
NZ_CP023141_9	9.5\|4198344\|26\|NZ_CP023141\|CRT	4198344-4198369	26	NC_047756	Caulobacter phage Sansa, complete genome	79674-79699	4	0.846
NZ_CP023141_9	9.6\|4198401\|26\|NZ_CP023141\|CRT	4198401-4198426	26	NZ_CP050092	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b6, complete sequence	476522-476547	4	0.846
NZ_CP023141_9	9.6\|4198401\|26\|NZ_CP023141\|CRT	4198401-4198426	26	NZ_CP050098	Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b4, complete sequence	330008-330033	4	0.846
NZ_CP023141_9	9.6\|4198401\|26\|NZ_CP023141\|CRT	4198401-4198426	26	NZ_CP025015	Rhizobium leguminosarum strain Norway plasmid pRLN3, complete sequence	380375-380400	4	0.846
NZ_CP023141_9	9.6\|4198401\|26\|NZ_CP023141\|CRT	4198401-4198426	26	NZ_CP053440	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eF, complete sequence	335527-335552	4	0.846
NZ_CP023141_9	9.6\|4198401\|26\|NZ_CP023141\|CRT	4198401-4198426	26	NZ_CP022999	Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-A, complete sequence	625528-625553	4	0.846
NZ_CP023141_9	9.6\|4198401\|26\|NZ_CP023141\|CRT	4198401-4198426	26	NZ_CP054022	Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence	13961-13986	4	0.846
NZ_CP023141_9	9.6\|4198401\|26\|NZ_CP023141\|CRT	4198401-4198426	26	NZ_CP054032	Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence	974361-974386	4	0.846
NZ_CP023141_9	9.6\|4198401\|26\|NZ_CP023141\|CRT	4198401-4198426	26	NZ_CP054032	Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence	632175-632200	4	0.846
NZ_CP023141_9	9.6\|4198401\|26\|NZ_CP023141\|CRT	4198401-4198426	26	NC_012853	Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132503, complete sequence	258532-258557	4	0.846
NZ_CP023141_9	9.6\|4198401\|26\|NZ_CP023141\|CRT	4198401-4198426	26	NC_017958	Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence	715970-715995	4	0.846
NZ_CP023141_9	9.6\|4198401\|26\|NZ_CP023141\|CRT	4198401-4198426	26	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	729430-729455	4	0.846
NZ_CP023141_9	9.6\|4198401\|26\|NZ_CP023141\|CRT	4198401-4198426	26	NZ_CP022565	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK01, complete sequence	205743-205768	4	0.846
NZ_CP023141_9	9.6\|4198401\|26\|NZ_CP023141\|CRT	4198401-4198426	26	NZ_CP036516	Lichenihabitans psoromatis strain PAMC 29148 plasmid p_unnamed1, complete sequence	118706-118731	4	0.846
NZ_CP023141_9	9.1\|4198104\|26\|NZ_CP023141\|CRT	4198104-4198129	26	NZ_CP045120	Rubrobacter sp. SCSIO 52909 plasmid unnamed1, complete sequence	153879-153904	5	0.808
NZ_CP023141_9	9.1\|4198104\|26\|NZ_CP023141\|CRT	4198104-4198129	26	NC_027340	Erwinia phage phiEa2809, complete genome	19906-19931	5	0.808
NZ_CP023141_9	9.1\|4198104\|26\|NZ_CP023141\|CRT	4198104-4198129	26	NC_048702	Erwinia phage vB_EamM-Bue1, complete genome	18572-18597	5	0.808
NZ_CP023141_9	9.2\|4198161\|26\|NZ_CP023141\|CRT	4198161-4198186	26	NC_007960	Nitrobacter hamburgensis X14 plasmid 2, complete sequence	20142-20167	5	0.808
NZ_CP023141_9	9.5\|4198344\|26\|NZ_CP023141\|CRT	4198344-4198369	26	NZ_CP015091	Pelagibaca abyssi strain JLT2014 plasmid pPABY1, complete sequence	42089-42114	5	0.808
NZ_CP023141_9	9.5\|4198344\|26\|NZ_CP023141\|CRT	4198344-4198369	26	NZ_CP029209	Nitratireductor sp. OM-1 plasmid pOM-1, complete sequence	796727-796752	5	0.808
NZ_CP023141_9	9.6\|4198401\|26\|NZ_CP023141\|CRT	4198401-4198426	26	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	724133-724158	5	0.808
NZ_CP023141_9	9.6\|4198401\|26\|NZ_CP023141\|CRT	4198401-4198426	26	CP006880	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence	1375015-1375040	5	0.808
NZ_CP023141_9	9.6\|4198401\|26\|NZ_CP023141\|CRT	4198401-4198426	26	NC_016586	Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence	352328-352353	5	0.808
NZ_CP023141_9	9.6\|4198401\|26\|NZ_CP023141\|CRT	4198401-4198426	26	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	635593-635618	6	0.769
NZ_CP023141_9	9.6\|4198401\|26\|NZ_CP023141\|CRT	4198401-4198426	26	NZ_CP017105	Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence	1216657-1216682	6	0.769
NZ_CP023141_9	9.6\|4198401\|26\|NZ_CP023141\|CRT	4198401-4198426	26	NZ_CP035502	Sphingosinicella sp. BN140058 plasmid p1, complete sequence	143907-143932	6	0.769
NZ_CP023141_5	5.1\|2491273\|32\|NZ_CP023141\|CRISPRCasFinder	2491273-2491304	32	NZ_CP032924	Agrobacterium tumefaciens strain 1D1108 plasmid pAt1D1108b, complete sequence	152273-152304	9	0.719

1. spacer 9.5|4198344|26|NZ_CP023141|CRT matches to KT809302 (Haloarcula californiae icosahedral virus 1, complete genome) position: , mismatch: 3, identity: 0.885

cggccgtcagctggcccgcgccgaac	CRISPR spacer
cggccttcaggtggcccgcgccgaag	Protospacer
***** **** **************

2. spacer 9.5|4198344|26|NZ_CP023141|CRT matches to NC_003903 (Streptomyces coelicolor A3(2) plasmid SCP1, complete sequence) position: , mismatch: 3, identity: 0.885

cggccgtcagctggcccgcgccgaac	CRISPR spacer
ccgccgtgagctggcccgcgccgacc	Protospacer
* ***** **************** *

3. spacer 9.5|4198344|26|NZ_CP023141|CRT matches to NC_003903 (Streptomyces coelicolor A3(2) plasmid SCP1, complete sequence) position: , mismatch: 3, identity: 0.885

cggccgtcagctggcccgcgccgaac	CRISPR spacer
ccgccgtgagctggcccgcgccgacc	Protospacer
* ***** **************** *

4. spacer 9.6|4198401|26|NZ_CP023141|CRT matches to NZ_CP050092 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b6, complete sequence) position: , mismatch: 3, identity: 0.885

gggcatcgagccggccgttgccgacc	CRISPR spacer
tggcaccgagccggccgttgccgagc	Protospacer
 ****.****************** *

5. spacer 9.1|4198104|26|NZ_CP023141|CRT matches to NZ_CP029356 (Azospirillum sp. CFH 70021 plasmid unnamed1) position: , mismatch: 4, identity: 0.846

ccgcagagagatcgccatcaccgacc	CRISPR spacer
gggcagagagttcgccgtcaccgacc	Protospacer
  ******** *****.*********

6. spacer 9.1|4198104|26|NZ_CP023141|CRT matches to NZ_CP032325 (Azospirillum brasilense strain MTCC4035 plasmid p4, complete sequence) position: , mismatch: 4, identity: 0.846

ccgcagagagatcgccatcaccgacc	CRISPR spacer
cccgaccgagatcgccatcaccgacc	Protospacer
**  *  *******************

7. spacer 9.1|4198104|26|NZ_CP023141|CRT matches to NZ_CP015319 (Mesorhizobium amorphae CCNWGS0123 plasmid pM0123a) position: , mismatch: 4, identity: 0.846

ccgcagagagatcgccatcaccgacc	CRISPR spacer
ccgcatagagatcgccataaccgcca	Protospacer
***** ************ **** *

8. spacer 9.1|4198104|26|NZ_CP023141|CRT matches to NZ_CP015322 (Mesorhizobium amorphae CCNWGS0123 plasmid pM0123d, complete sequence) position: , mismatch: 4, identity: 0.846

ccgcagagagatcgccatcaccgacc	CRISPR spacer
ccgcatagagatcgccataaccgcca	Protospacer
***** ************ **** *

9. spacer 9.1|4198104|26|NZ_CP023141|CRT matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 4, identity: 0.846

ccgcagagagatcgccatcaccgacc	CRISPR spacer
cccgacggagatcgccatcaccgacc	Protospacer
**  * .*******************

10. spacer 9.1|4198104|26|NZ_CP023141|CRT matches to NZ_CP007796 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence) position: , mismatch: 4, identity: 0.846

ccgcagagagatcgccatcaccgacc	CRISPR spacer
cccgaccgagatcgccatcaccgacc	Protospacer
**  *  *******************

11. spacer 9.3|4198218|26|NZ_CP023141|CRT matches to MN693551 (Marine virus AFVG_25M463, complete genome) position: , mismatch: 4, identity: 0.846

tggcctgtaccttgccgttgcccttc	CRISPR spacer
ctgcctttaccttgccgatgcccttc	Protospacer
. **** ********** ********

12. spacer 9.5|4198344|26|NZ_CP023141|CRT matches to MH509442 (Mycobacterium phage Aminay, complete genome) position: , mismatch: 4, identity: 0.846

cggccgtcagctggcccgcgccgaac	CRISPR spacer
cggccgtgagcgggcccgcgccgaga	Protospacer
******* *** ************.

13. spacer 9.5|4198344|26|NZ_CP023141|CRT matches to NZ_CP015737 (Shinella sp. HZN7 plasmid pShin-01, complete sequence) position: , mismatch: 4, identity: 0.846

cggccgtcagctggcccgcgccgaac	CRISPR spacer
cctccgtcggctggccggcgccgaac	Protospacer
*  *****.******* *********

14. spacer 9.5|4198344|26|NZ_CP023141|CRT matches to AP021850 (Deinococcus grandis ATCC 43672 plasmid: pDEGR-1 DNA, complete genome) position: , mismatch: 4, identity: 0.846

cggccgtcagctggcccgcgccgaac	CRISPR spacer
cggcagccagctggcccgcgccgcgc	Protospacer
**** *.**************** .*

15. spacer 9.5|4198344|26|NZ_CP023141|CRT matches to NC_017957 (Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence) position: , mismatch: 4, identity: 0.846

cggccgtcagctggcccgcgccgaac	CRISPR spacer
cttccgtcagctgatccgcgccgaac	Protospacer
*  **********..***********

16. spacer 9.5|4198344|26|NZ_CP023141|CRT matches to NC_047756 (Caulobacter phage Sansa, complete genome) position: , mismatch: 4, identity: 0.846

cggccgtcagctggcccgcgccgaac	CRISPR spacer
ctcccgtctgctggcccgcgctgaac	Protospacer
*  ***** ************.****

17. spacer 9.5|4198344|26|NZ_CP023141|CRT matches to NC_047756 (Caulobacter phage Sansa, complete genome) position: , mismatch: 4, identity: 0.846

cggccgtcagctggcccgcgccgaac	CRISPR spacer
ctcccgtctgctggcccgcgctgaac	Protospacer
*  ***** ************.****

18. spacer 9.6|4198401|26|NZ_CP023141|CRT matches to NZ_CP050092 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b6, complete sequence) position: , mismatch: 4, identity: 0.846

gggcatcgagccggccgttgccgacc	CRISPR spacer
tcgcatcgaacgggccgttgccgacc	Protospacer
  *******.* **************

19. spacer 9.6|4198401|26|NZ_CP023141|CRT matches to NZ_CP050098 (Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b4, complete sequence) position: , mismatch: 4, identity: 0.846

gggcatcgagccggccgttgccgacc	CRISPR spacer
tcgcatcgaacgggccgttgccgacc	Protospacer
  *******.* **************

20. spacer 9.6|4198401|26|NZ_CP023141|CRT matches to NZ_CP025015 (Rhizobium leguminosarum strain Norway plasmid pRLN3, complete sequence) position: , mismatch: 4, identity: 0.846

gggcatcgagccggccgttgccgacc	CRISPR spacer
tcgcatcgaacgggccgttgccgacc	Protospacer
  *******.* **************

21. spacer 9.6|4198401|26|NZ_CP023141|CRT matches to NZ_CP053440 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eF, complete sequence) position: , mismatch: 4, identity: 0.846

gggcatcgagccggccgttgccgacc	CRISPR spacer
tcgcatcgaacgggccgttgccgacc	Protospacer
  *******.* **************

22. spacer 9.6|4198401|26|NZ_CP023141|CRT matches to NZ_CP022999 (Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-A, complete sequence) position: , mismatch: 4, identity: 0.846

gggcatcgagccggccgttgccgacc	CRISPR spacer
gggcttcgagccggccgttcccgagt	Protospacer
**** ************** **** .

23. spacer 9.6|4198401|26|NZ_CP023141|CRT matches to NZ_CP054022 (Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence) position: , mismatch: 4, identity: 0.846

gggcatcgagccggccgttgccgacc	CRISPR spacer
tcgcatcgaacgggccgttgccgacc	Protospacer
  *******.* **************

24. spacer 9.6|4198401|26|NZ_CP023141|CRT matches to NZ_CP054032 (Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence) position: , mismatch: 4, identity: 0.846

gggcatcgagccggccgttgccgacc	CRISPR spacer
tcgcatcgaacgggccgttgccgacc	Protospacer
  *******.* **************

25. spacer 9.6|4198401|26|NZ_CP023141|CRT matches to NZ_CP054032 (Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence) position: , mismatch: 4, identity: 0.846

gggcatcgagccggccgttgccgacc	CRISPR spacer
tggcgccgagccggccgttgccgagc	Protospacer
 ***..****************** *

26. spacer 9.6|4198401|26|NZ_CP023141|CRT matches to NC_012853 (Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132503, complete sequence) position: , mismatch: 4, identity: 0.846

gggcatcgagccggccgttgccgacc	CRISPR spacer
tggccccgagccggccgttgccgagc	Protospacer
 *** .****************** *

27. spacer 9.6|4198401|26|NZ_CP023141|CRT matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 4, identity: 0.846

gggcatcgagccggccgttgccgacc	CRISPR spacer
gggcatcgggccggccgtcgccggtc	Protospacer
********.*********.****..*

28. spacer 9.6|4198401|26|NZ_CP023141|CRT matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 4, identity: 0.846

gggcatcgagccggccgttgccgacc	CRISPR spacer
gggcatcgagccggccgtcggcgttc	Protospacer
******************.* ** .*

29. spacer 9.6|4198401|26|NZ_CP023141|CRT matches to NZ_CP022565 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK01, complete sequence) position: , mismatch: 4, identity: 0.846

gggcatcgagccggccgttgccgacc	CRISPR spacer
tggcgccgagccggccgttgccgagc	Protospacer
 ***..****************** *

30. spacer 9.6|4198401|26|NZ_CP023141|CRT matches to NZ_CP036516 (Lichenihabitans psoromatis strain PAMC 29148 plasmid p_unnamed1, complete sequence) position: , mismatch: 4, identity: 0.846

gggcatcgagccggccgttgccgacc	CRISPR spacer
cggcatcgagcagggcgttgccgatc	Protospacer
 ********** ** *********.*

31. spacer 9.1|4198104|26|NZ_CP023141|CRT matches to NZ_CP045120 (Rubrobacter sp. SCSIO 52909 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.808

ccgcagagagatcgccatcaccgacc	CRISPR spacer
acgcatagaggtcgccatcaccgaga	Protospacer
 **** ****.*************

32. spacer 9.1|4198104|26|NZ_CP023141|CRT matches to NC_027340 (Erwinia phage phiEa2809, complete genome) position: , mismatch: 5, identity: 0.808

ccgcagagagatcgccatcaccgacc	CRISPR spacer
gaccacagagatcgcaatcaccgacc	Protospacer
   ** ********* **********

33. spacer 9.1|4198104|26|NZ_CP023141|CRT matches to NC_048702 (Erwinia phage vB_EamM-Bue1, complete genome) position: , mismatch: 5, identity: 0.808

ccgcagagagatcgccatcaccgacc	CRISPR spacer
gaccacagagatcgcaatcaccgacc	Protospacer
   ** ********* **********

34. spacer 9.2|4198161|26|NZ_CP023141|CRT matches to NC_007960 (Nitrobacter hamburgensis X14 plasmid 2, complete sequence) position: , mismatch: 5, identity: 0.808

gcgcctgggtatccccctgaccaatc	CRISPR spacer
gcgcctgggtctcctcctgaccatcg	Protospacer
********** ***.******** .

35. spacer 9.5|4198344|26|NZ_CP023141|CRT matches to NZ_CP015091 (Pelagibaca abyssi strain JLT2014 plasmid pPABY1, complete sequence) position: , mismatch: 5, identity: 0.808

cggccgtcagctggcccgcgccgaac	CRISPR spacer
cggccgtcagctcgcccgcgtcgctg	Protospacer
************ *******.**

36. spacer 9.5|4198344|26|NZ_CP023141|CRT matches to NZ_CP029209 (Nitratireductor sp. OM-1 plasmid pOM-1, complete sequence) position: , mismatch: 5, identity: 0.808

cggccgtcagctggcccgcgccgaac	CRISPR spacer
gcaccgtcagcttgcccgcaccgaac	Protospacer
  .********* ******.******

37. spacer 9.6|4198401|26|NZ_CP023141|CRT matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 5, identity: 0.808

gggcatcgagccggccgttgccgacc	CRISPR spacer
ccgcatcgagccggccgtcgccgaga	Protospacer
  ****************.*****

38. spacer 9.6|4198401|26|NZ_CP023141|CRT matches to CP006880 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence) position: , mismatch: 5, identity: 0.808

gggcatcgagccggccgttgccgacc	CRISPR spacer
gggcatcgagcaggccgttgcgttgc	Protospacer
*********** *********    *

39. spacer 9.6|4198401|26|NZ_CP023141|CRT matches to NC_016586 (Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence) position: , mismatch: 5, identity: 0.808

gggcatcgagccggccgttgccgacc	CRISPR spacer
aggcatcgagccggccctggccgaga	Protospacer
.*************** * *****

40. spacer 9.6|4198401|26|NZ_CP023141|CRT matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.769

gggcatcgagccggccgttgccgacc	CRISPR spacer
tatcttcgagccggccgttgccgaaa	Protospacer
 . * *******************

41. spacer 9.6|4198401|26|NZ_CP023141|CRT matches to NZ_CP017105 (Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence) position: , mismatch: 6, identity: 0.769

gggcatcgagccggccgttgccgacc	CRISPR spacer
gggcatcgagcaggccgttgcgttgt	Protospacer
*********** *********    .

42. spacer 9.6|4198401|26|NZ_CP023141|CRT matches to NZ_CP035502 (Sphingosinicella sp. BN140058 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.769

gggcatcgagccggccgttgccgacc	CRISPR spacer
cggcatcgagccggccgttgagctgc	Protospacer
 *******************     *

43. spacer 5.1|2491273|32|NZ_CP023141|CRISPRCasFinder matches to NZ_CP032924 (Agrobacterium tumefaciens strain 1D1108 plasmid pAt1D1108b, complete sequence) position: , mismatch: 9, identity: 0.719

gggataacggccgtcatttgccgtcttggcga	CRISPR spacer
ctcatcgcggctgtcatttgccgccttggccg	Protospacer
   ** .****.***********.****** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

59007 : 134902

Aeromonas_virus(72.34%)

portal,capsid,head,plate,holin,transposase,integrase,tRNA,terminase,tail

attL 53925:53941|attR 126755:126771

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
53925:53941	attL	NA	NA	NA	NA
WP_095591434.1\|59007_59994_+\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_005305049.1\|59996_60146_+	hypothetical protein	NA	NA	NA	NA
WP_010636148.1\|60222_60648_-	hypothetical protein	NA	NA	NA	NA
WP_005305063.1\|60749_61022_-	DNA-binding protein HU-alpha	A0A249Y2G7	Serratia_phage	3.6e-11	44.2
WP_128830359.1\|61080_61266_-	hypothetical protein	NA	NA	NA	NA
WP_005305066.1\|61363_61849_+	Rsd/AlgQ family anti-sigma factor	NA	NA	NA	NA
WP_095591435.1\|61950_62331_+	PilZ domain-containing protein	NA	NA	NA	NA
WP_005305075.1\|62408_63773_-	DNA repair protein RadA	NA	NA	NA	NA
WP_010636145.1\|63873_66252_+	PilZ domain-containing protein	NA	NA	NA	NA
WP_005305083.1\|66367_67273_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_095591436.1\|67323_68334_-	phosphoserine phosphatase SerB	NA	NA	NA	NA
WP_005305087.1\|68454_69063_+\|transposase	transposase	NA	NA	NA	NA
WP_095591437.1\|69123_71370_+	PAS domain S-box protein	G3MA91	Bacillus_virus	9.3e-20	32.6
WP_095591438.1\|71439_72156_-	purine-nucleoside phosphorylase	NA	NA	NA	NA
WP_010636141.1\|72233_73442_-	phosphopentomutase	NA	NA	NA	NA
WP_095591439.1\|73456_74788_-	thymidine phosphorylase	A0A0H3UZD4	Geobacillus_virus	1.2e-78	39.8
WP_042007893.1\|74898_75672_-	deoxyribose-phosphate aldolase	NA	NA	NA	NA
WP_005305103.1\|76062_76233_-	DUF1427 family protein	R4TMJ4	Halovirus	6.3e-06	60.0
WP_005305106.1\|76358_77633_-	NupC/NupG family nucleoside CNT transporter	NA	NA	NA	NA
WP_017781074.1\|77846_78635_-	TatD family hydrolase	NA	NA	NA	NA
WP_005305113.1\|78673_79291_+	type IVa pilus pseudopilin TppF	NA	NA	NA	NA
WP_005305116.1\|79259_79442_-	DUF5363 family protein	NA	NA	NA	NA
WP_174704189.1\|79524_80034_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_095591440.1\|80206_81559_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	2.6e-94	42.9
WP_010636134.1\|81884_83294_-	ammonium transporter	NA	NA	NA	NA
WP_095591441.1\|83874_84939_-\|integrase	site-specific integrase	A5X9F3	Aeromonas_virus	1.0e-170	85.3
WP_157737145.1\|84935_86039_-	acyltransferase family protein	NA	NA	NA	NA
WP_039040888.1\|86258_86975_-	LexA family transcriptional regulator	A5X9F5	Aeromonas_virus	3.4e-125	93.7
WP_015985385.1\|87122_87338_+	hypothetical protein	A5X9F6	Aeromonas_virus	2.5e-31	100.0
WP_095593432.1\|87367_87877_+	phage regulatory CII family protein	A5X9F7	Aeromonas_virus	3.9e-83	92.3
WP_095591443.1\|87887_88346_+	hypothetical protein	A5X9F8	Aeromonas_virus	1.6e-75	94.1
WP_157737146.1\|88414_88591_+	hypothetical protein	NA	NA	NA	NA
WP_095591444.1\|88563_88767_+	hypothetical protein	A5X9F9	Aeromonas_virus	4.8e-29	94.0
WP_095591445.1\|88763_88955_+	hypothetical protein	A5X9G0	Aeromonas_virus	3.6e-26	93.7
WP_039040893.1\|88951_89161_+	hypothetical protein	A5X9G1	Aeromonas_virus	2.2e-29	98.6
WP_095591446.1\|89157_89694_+	DNA methyltransferase	U3PDF3	Vibrio_phage	3.7e-68	67.1
WP_095591447.1\|89690_89948_+	hypothetical protein	A5X9G3	Aeromonas_virus	6.6e-31	82.4
WP_174704166.1\|89944_92275_+	replication endonuclease	A5X9G4	Aeromonas_virus	0.0e+00	92.3
WP_095591449.1\|92271_92769_+	hypothetical protein	A5X9G5	Aeromonas_virus	5.1e-72	84.0
WP_095591450.1\|92765_92990_+	hypothetical protein	A5X9G7	Aeromonas_virus	5.5e-26	79.7
WP_095591451.1\|92986_93319_+	hypothetical protein	A0A219YB20	Aeromonas_phage	8.5e-15	44.2
WP_157737147.1\|93902_94124_+	hypothetical protein	NA	NA	NA	NA
WP_095591453.1\|94204_95260_+	ImmA/IrrE family metallo-endopeptidase	A0A0U4JD08	Gordonia_phage	1.5e-28	29.5
WP_095591454.1\|95260_95740_+	PIN domain-containing protein	NA	NA	NA	NA
WP_095591455.1\|95775_96027_-	ogr/Delta-like zinc finger family protein	A5X9H0	Aeromonas_virus	6.8e-41	96.4
WP_095591456.1\|96092_97106_-\|portal	phage portal protein	A5X9H1	Aeromonas_virus	8.3e-186	94.7
WP_095591457.1\|97102_98917_-\|terminase	terminase ATPase subunit family protein	A5X9H3	Aeromonas_virus	0.0e+00	97.0
WP_095591458.1\|99092_99956_+\|capsid	GPO family capsid scaffolding protein	A5X9H4	Aeromonas_virus	7.6e-148	90.6
WP_095591459.1\|99966_101043_+\|capsid	phage major capsid protein, P2 family	A5X9H5	Aeromonas_virus	3.3e-201	98.3
WP_095591460.1\|101046_101772_+\|terminase	terminase endonuclease subunit	A5X9H6	Aeromonas_virus	4.3e-136	98.8
WP_095591461.1\|101944_102406_+\|head	head completion/stabilization protein	A5X9H7	Aeromonas_virus	2.9e-69	91.5
WP_174704167.1\|102402_102927_+\|tail	phage tail protein	A5X9H8	Aeromonas_virus	1.0e-91	92.4
WP_095591463.1\|102923_103610_+	phage virion morphogenesis protein	A5X9H9	Aeromonas_virus	2.0e-119	96.5
WP_039040908.1\|103614_104739_+	DUF2586 family protein	A5X9I0	Aeromonas_virus	1.4e-189	88.5
WP_039040909.1\|104742_105198_+	DUF2597 family protein	A5X9I1	Aeromonas_virus	3.2e-73	88.7
WP_039040910.1\|105207_105417_+	TraR/DksA family transcriptional regulator	A5X9I2	Aeromonas_virus	1.8e-26	84.1
WP_095593433.1\|105440_105752_+\|holin	phage holin, lambda family	A5X9I3	Aeromonas_virus	1.3e-25	60.4
WP_095591464.1\|105753_106233_+	TIGR02594 family protein	A0A1I9KFD8	Aeromonas_phage	9.0e-66	71.1
WP_095591465.1\|106229_106661_+	hypothetical protein	NA	NA	NA	NA
WP_095591466.1\|106784_107048_+\|tail	putative phage tail assembly chaperone	A5X9I7	Aeromonas_virus	7.9e-32	79.3
WP_095591467.1\|107239_109009_+\|tail	phage tail tape measure protein	A5X9I9	Aeromonas_virus	6.2e-144	46.9
WP_095591468.1\|109008_109332_+	DUF2590 family protein	A5X9J0	Aeromonas_virus	9.7e-48	86.9
WP_095591469.1\|109328_110516_+\|plate	baseplate J/gp47 family protein	A5X9J1	Aeromonas_virus	3.1e-184	83.2
WP_095591470.1\|110508_111189_+\|tail	phage tail protein	A5X9J2	Aeromonas_virus	2.0e-87	75.3
WP_095591471.1\|111188_114191_+\|tail	phage tail protein	A5X9J3	Aeromonas_virus	3.8e-101	59.0
WP_095593434.1\|114457_114907_+	hypothetical protein	A5X9J6	Aeromonas_virus	2.0e-35	57.0
WP_095591472.1\|114903_115464_+	hypothetical protein	A5X9J7	Aeromonas_virus	9.5e-67	78.7
WP_095591473.1\|115460_117071_+	hypothetical protein	A5X9J8	Aeromonas_virus	1.6e-244	75.8
WP_005305129.1\|118052_118574_+	RDD family protein	NA	NA	NA	NA
WP_010636091.1\|118743_119814_-	LPS export ABC transporter permease LptG	NA	NA	NA	NA
WP_017765325.1\|119955_121068_-	LPS export ABC transporter permease LptF	NA	NA	NA	NA
WP_005305141.1\|121240_122749_+	leucyl aminopeptidase	Q6GYZ8	Mycoplasma_phage	9.8e-50	37.6
WP_095591474.1\|122911_123367_+	DNA polymerase III subunit chi	NA	NA	NA	NA
WP_095591475.1\|123432_126285_+\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	3.1e-137	36.2
WP_025201157.1\|126471_127764_+	HlyC/CorC family transporter	NA	NA	NA	NA
126755:126771	attR	NA	NA	NA	NA
WP_005305157.1\|127782_128448_+	DedA family protein	NA	NA	NA	NA
WP_094698346.1\|128586_129414_+	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA
WP_005305164.1\|130731_130920_-	carbon storage regulator CsrA	A0A2I7RT00	Vibrio_phage	2.9e-12	66.7
WP_095591476.1\|131013_132261_-	aspartate kinase	NA	NA	NA	NA
WP_019838968.1\|132277_134902_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	7.4e-77	38.3

DBSCAN-SWA_2

1641196 : 1651146

uncultured_Mediterranean_phage(25.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_043170413.1\|1641196_1641943_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	8.5e-71	54.5
WP_005309437.1\|1641947_1642565_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	4.0e-34	46.4
WP_010635013.1\|1642561_1643143_+	DedA family protein	NA	NA	NA	NA
WP_025202185.1\|1643152_1644208_+	peptidoglycan DD-metalloendopeptidase family protein	A0A0A7NU10	Lactobacillus_phage	3.9e-13	41.8
WP_005309444.1\|1644255_1645239_+	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	2.2e-34	34.1
WP_017764738.1\|1645323_1646337_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	1.5e-107	58.3
WP_005309452.1\|1646516_1646732_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_017780947.1\|1646747_1647191_+	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	2.5e-25	47.9
WP_095592079.1\|1647279_1649067_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.2e-73	40.9
WP_080630672.1\|1649280_1651146_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-34	32.6

DBSCAN-SWA_3

2346376 : 2356593

Enterobacteria_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_043169758.1\|2346376_2347462_+	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	1.1e-98	52.0
WP_043169756.1\|2347461_2348349_+	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA
WP_043169754.1\|2348461_2349346_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	8.2e-105	62.7
WP_043169753.1\|2349402_2349966_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	3.1e-49	52.8
WP_095592374.1\|2349968_2351366_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	1.1e-52	29.0
WP_080760782.1\|2351396_2352761_+	phosphomannomutase	A0A127AWJ1	Bacillus_phage	1.6e-30	27.2
WP_080760781.1\|2352775_2353897_+	GDP-mannose 4,6-dehydratase	M1HXY1	Acanthocystis_turfacea_Chlorella_virus	8.1e-134	66.2
WP_167385322.1\|2353893_2354988_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	A0A2P1ELT3	Moumouvirus	1.2e-44	34.7
WP_011706701.1\|2355052_2355838_+	ABC transporter permease	NA	NA	NA	NA
WP_043169751.1\|2355834_2356593_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.8e-10	24.6

DBSCAN-SWA_4

2687767 : 2700267

Shigella_phage(45.45%)

head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_095592512.1\|2687767_2688193_+	transcriptional regulator	A0A0C4UQZ9	Shigella_phage	1.2e-26	46.7
WP_095592513.1\|2688282_2688942_-	DUF4145 domain-containing protein	NA	NA	NA	NA
WP_095592514.1\|2689084_2689660_+	secretion activator protein	B0ZSJ3	Halomonas_phage	8.7e-15	31.0
WP_095592515.1\|2689656_2689974_+	hypothetical protein	NA	NA	NA	NA
WP_005353373.1\|2689966_2690188_+	hypothetical protein	NA	NA	NA	NA
WP_095592516.1\|2690209_2690437_+	TraR/DksA C4-type zinc finger protein	NA	NA	NA	NA
WP_005345918.1\|2690417_2690732_+	DUF2730 family protein	NA	NA	NA	NA
WP_005345917.1\|2690728_2691025_+	hypothetical protein	A0A0C4UR00	Shigella_phage	6.2e-17	57.0
WP_005353368.1\|2691027_2691603_+	DUF3486 family protein	A0A0C4UQU5	Shigella_phage	1.6e-61	68.9
WP_095592517.1\|2691602_2693162_+	hypothetical protein	A0A2I7S9C5	Vibrio_phage	1.1e-160	58.9
WP_095592518.1\|2693161_2694745_+	DUF935 domain-containing protein	J9SVY0	Pseudomonas_phage	6.3e-132	51.2
WP_095592519.1\|2694744_2696232_+	F protein	A0A2H4IYU7	uncultured_Caudovirales_phage	1.8e-64	50.8
WP_013723702.1\|2696267_2696468_+	hypothetical protein	NA	NA	NA	NA
WP_095592520.1\|2696467_2696914_+	phage virion morphogenesis protein	Q5ZQY1	Pseudomonas_phage	1.5e-14	51.2
WP_095592521.1\|2697137_2698286_+	hypothetical protein	A0A0C4UQU6	Shigella_phage	2.2e-73	47.3
WP_076495064.1\|2698366_2699275_+\|head	Mu-like prophage major head subunit gpT family protein	A0A0C4UQR9	Shigella_phage	1.8e-102	57.6
WP_095592522.1\|2699378_2699840_+	Rho termination factor N-terminal domain-containing protein	NA	NA	NA	NA
WP_095592523.1\|2699841_2700267_+	DUF1320 family protein	B7SDP4	Haemophilus_phage	3.2e-14	36.4

DBSCAN-SWA_5

3586846 : 3632000

uncultured_Mediterranean_phage(14.29%)

protease,plate,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_017779989.1\|3586846_3587605_-\|tRNA	tRNA-(ms[2]io[6]A)-hydroxylase	NA	NA	NA	NA
WP_005300060.1\|3587789_3589310_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.8e-89	42.6
WP_005300057.1\|3589331_3589820_-	CvpA family protein	NA	NA	NA	NA
WP_010634209.1\|3590006_3591302_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	4.4e-91	42.5
WP_026141917.1\|3591641_3592979_-	AAA family ATPase	G3MBE0	Bacillus_virus	1.7e-77	40.9
WP_043158752.1\|3593055_3593664_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_095592913.1\|3593741_3596270_-	DNA translocase FtsK 4TM domain-containing protein	A0A218M9A2	Mycobacterium_phage	1.8e-88	48.4
WP_005300047.1\|3596471_3596963_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_054545048.1\|3597873_3598824_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	9.2e-62	44.2
WP_024941339.1\|3598881_3600129_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	2.9e-15	32.2
WP_005300039.1\|3600236_3600707_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA
WP_095592914.1\|3600726_3601434_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_005300035.1\|3601430_3602147_+	arginyltransferase	NA	NA	NA	NA
WP_005300033.1\|3602215_3602434_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_095592915.1\|3602503_3604756_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.9e-169	44.0
WP_005300028.1\|3604815_3605133_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.4e-14	49.4
WP_005300025.1\|3605362_3605581_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.2e-17	63.2
WP_005300012.1\|3605691_3606555_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	2.3e-27	31.2
WP_157737194.1\|3607522_3608434_-	hypothetical protein	NA	NA	NA	NA
WP_095592916.1\|3608435_3610970_-	hypothetical protein	A0A0X8XCA1	Acaryochloris_phage	1.5e-10	42.6
WP_095592917.1\|3610979_3613025_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	6.2e-31	26.3
WP_005300007.1\|3613035_3613323_-	type VI secretion system PAAR protein	G4KK81	Yersinia_phage	2.3e-08	39.4
WP_017783133.1\|3613580_3615011_-	type VI secretion system ImpA family N-terminal domain-containing protein	NA	NA	NA	NA
WP_095592918.1\|3615057_3618543_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_095592919.1\|3618584_3620030_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_095592920.1\|3620039_3620645_-	type VI secretion system-associated protein TagO	NA	NA	NA	NA
WP_095592921.1\|3620644_3622183_-	sigma-54-dependent transcriptional regulator VasH	NA	NA	NA	NA
WP_095592922.1\|3622185_3624828_-	type VI secretion system ATPase TssH	A0A2C9CYX3	Yersinia_phage	8.2e-92	32.6
WP_167385371.1\|3624848_3625628_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_017764290.1\|3625650_3626985_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_095592923.1\|3626987_3627500_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_042050940.1\|3627499_3628780_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_095592924.1\|3628836_3629835_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_095592925.1\|3629798_3631565_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_010634233.1\|3631568_3632000_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA

DBSCAN-SWA_6

4501607 : 4539317

uncultured_Caudovirales_phage(22.22%)

portal,capsid,head,protease,terminase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_095593268.1\|4501607_4505372_-\|tail	tail fiber domain-containing protein	E5DQP5	Aeromonas_phage	1.2e-51	37.6
WP_095593269.1\|4505423_4505609_-	hypothetical protein	NA	NA	NA	NA
WP_157737201.1\|4505617_4506028_-	hypothetical protein	NA	NA	NA	NA
WP_095593270.1\|4506113_4509938_-	DUF1983 domain-containing protein	A0A1B1IRL4	uncultured_Mediterranean_phage	8.6e-18	22.9
WP_157737202.1\|4509956_4510619_-	hypothetical protein	NA	NA	NA	NA
WP_095593271.1\|4510618_4511173_-	hypothetical protein	NA	NA	NA	NA
WP_157737203.1\|4511659_4512211_-	hypothetical protein	NA	NA	NA	NA
WP_095593273.1\|4512231_4512681_-	hypothetical protein	NA	NA	NA	NA
WP_157737204.1\|4512668_4513235_-	hypothetical protein	NA	NA	NA	NA
WP_095593274.1\|4513279_4516003_-	hypothetical protein	NA	NA	NA	NA
WP_157737205.1\|4516076_4516256_-	hypothetical protein	NA	NA	NA	NA
WP_157737206.1\|4516513_4516948_-	hypothetical protein	NA	NA	NA	NA
WP_095593276.1\|4517030_4517516_-	hypothetical protein	NA	NA	NA	NA
WP_157737207.1\|4517564_4518194_-	hypothetical protein	NA	NA	NA	NA
WP_095593277.1\|4518412_4520293_-\|terminase	terminase large subunit	A0A1P8DTK0	Proteus_phage	6.5e-75	35.5
WP_095593278.1\|4520282_4520708_-\|terminase	P27 family phage terminase small subunit	NA	NA	NA	NA
WP_095593279.1\|4521037_4521778_+	hypothetical protein	NA	NA	NA	NA
WP_157737208.1\|4521875_4522508_-	hypothetical protein	NA	NA	NA	NA
WP_157737209.1\|4523172_4524120_-	DUF3289 family protein	NA	NA	NA	NA
WP_095593282.1\|4524214_4524397_-	hypothetical protein	NA	NA	NA	NA
WP_095593283.1\|4524393_4524825_-	hypothetical protein	NA	NA	NA	NA
WP_157737210.1\|4524936_4525185_-	hypothetical protein	NA	NA	NA	NA
WP_095593285.1\|4525411_4525795_-	DUF1353 domain-containing protein	A0A0A8J9K3	Ralstonia_phage	4.0e-08	37.5
WP_095593286.1\|4525787_4525985_-	hypothetical protein	NA	NA	NA	NA
WP_095593287.1\|4526180_4526489_-	HNH endonuclease	A0A2I7SC46	Paenibacillus_phage	7.7e-10	47.1
WP_095593288.1\|4526589_4527078_-	glycoside hydrolase family protein	K4FB41	Cronobacter_phage	2.8e-22	44.4
WP_095593289.1\|4527078_4527360_-	hypothetical protein	NA	NA	NA	NA
WP_157737211.1\|4527522_4527909_+	hypothetical protein	NA	NA	NA	NA
WP_157737212.1\|4528007_4528796_+	hypothetical protein	NA	NA	NA	NA
WP_095593291.1\|4528989_4529289_-	hypothetical protein	NA	NA	NA	NA
WP_095593292.1\|4529408_4532261_-	hypothetical protein	A0A2H4J326	uncultured_Caudovirales_phage	4.3e-06	30.6
WP_157737213.1\|4532318_4532684_-	hypothetical protein	NA	NA	NA	NA
WP_095593294.1\|4532698_4533088_-	hypothetical protein	NA	NA	NA	NA
WP_095593295.1\|4533291_4533753_-	hypothetical protein	NA	NA	NA	NA
WP_157737214.1\|4533771_4534167_-	hypothetical protein	NA	NA	NA	NA
WP_095593296.1\|4534181_4534730_-	HK97 gp10 family phage protein	NA	NA	NA	NA
WP_095593297.1\|4534731_4535058_-	hypothetical protein	NA	NA	NA	NA
WP_095593298.1\|4535066_4535633_-	hypothetical protein	NA	NA	NA	NA
WP_095593299.1\|4535685_4536915_-\|capsid	phage major capsid protein	NA	NA	NA	NA
WP_095593300.1\|4537201_4538056_-\|head,protease	HK97 family phage prohead protease	A0A2H4JAI0	uncultured_Caudovirales_phage	8.1e-33	38.5
WP_095593301.1\|4537994_4539317_-\|portal	phage portal protein	A0A2D1GNU4	Pseudomonas_phage	2.2e-29	27.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP023141

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection