CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP016769	Candidatus Planktophila lacus isolate MMS-21-148 chromosome, complete genome	1 crisprs	DinG,WYL,cas4,DEDDh,cas3	0	1	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP016769_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016769_1

928610-928702

Orphan

Consensus_repeat	Method
AGTTGAGAATGGATTATTTCCGGGACGTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016769_1

>merge|NZ_CP016769|1|928610-928702|CRISPRCasFinder
AGTTGAGAATGGATTATTTCCGGGACGTGGCGGACGTGGAACTGCAGGTGTTGTTCCACCAGAAGTTGAGAATGGATTATTTCCAGGACGTGG

>NZ_CP016769|1|1|928610-928702|CRISPRCasFinder
AGTTGAGAATGGATTATTTCCGGGACGTGG	CGGACGTGGAACTGCAGGTGTTGTTCCACCAGA
AGTTGAGAATGGATTATTTCCAGGACGTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016769.1\|WP_095671835.1\|918770_919079_+\|AzlD-domain-containing-protein	unknown	unknown	gnl\|CDD\|377512
NZ_CP016769.1\|WP_095671285.1\|925069_925942_-\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|235113
NZ_CP016769.1\|WP_095671286.1\|925952_926384_-\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787
NZ_CP016769.1\|WP_095671280.1\|919344_920082_-\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|234595
NZ_CP016769.1\|WP_095671293.1\|933690_934842_-\|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	unknown	unknown	gnl\|CDD\|234737
NZ_CP016769.1\|WP_095671281.1\|920078_921368_-\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NZ_CP016769.1\|WP_095671288.1\|929227_929506_-\|YlxR-family-protein	unknown	unknown	gnl\|CDD\|377288
NZ_CP016769.1\|WP_095671282.1\|921386_923588_-\|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|131743
NZ_CP016769.1\|WP_095671836.1\|936045_937191_-\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	unknown	unknown	gnl\|CDD\|235472
NZ_CP016769.1\|WP_095671283.1\|923770_924040_-\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NZ_CP016769.1\|WP_095671296.1\|938229_939642_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274522
NZ_CP016769.1\|WP_095671284.1\|924160_925051_-\|bifunctional-riboflavin-kinase/FAD-synthetase	unknown	unknown	gnl\|CDD\|235536
NZ_CP016769.1\|WP_095671292.1\|931935_933669_-\|proline--tRNA-ligase	unknown	unknown	gnl\|CDD\|236405
NZ_CP016769.1\|WP_095671289.1\|929595_930582_-\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|237061
NZ_CP016769.1\|WP_095671279.1\|919075_919333_-\|NrdH-redoxin	unknown	unknown	gnl\|CDD\|131255
NZ_CP016769.1\|WP_095671294.1\|934897_936046_-\|site-2-protease-family-protein	unknown	unknown	gnl\|CDD\|308008
NZ_CP016769.1\|WP_095671295.1\|937207_938206_-\|agmatinase	unknown	unknown	gnl\|CDD\|212516
NZ_CP016769.1\|WP_095671290.1\|930574_931078_-\|ribosome-maturation-factor-RimP	unknown	unknown	gnl\|CDD\|234627
NZ_CP016769.1\|WP_095671291.1\|931148_931934_-\|TSUP-family-transporter	unknown	unknown	gnl\|CDD\|182593
NZ_CP016769.1\|WP_095671278.1\|918048_918765_+\|AzlC-family-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224215

Protein	Function_ID	Function_description	E-value
NZ_CP016769.1\|WP_095671835.1\|918770_919079_+\|AzlD-domain-containing-protein	gnl\|CDD\|377512	pfam05437, AzlD, Branched-chain amino acid transport protein (AzlD). This family consists of a number of bacterial and archaeal branched-chain amino acid transport proteins. AzlD is known to be involved in conferring resistance to 4-azaleucine although its exact role is uncertain.	0.000180919
NZ_CP016769.1\|WP_095671285.1\|925069_925942_-\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|235113	PRK03287, truB, tRNA pseudouridine synthase B; Provisional.	2.01114e-132
NZ_CP016769.1\|WP_095671286.1\|925952_926384_-\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	4.20534e-44
NZ_CP016769.1\|WP_095671280.1\|919344_920082_-\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|234595	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional.	3.90412e-101
NZ_CP016769.1\|WP_095671293.1\|933690_934842_-\|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	gnl\|CDD\|234737	PRK00366, ispG, flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase.	0
NZ_CP016769.1\|WP_095671281.1\|920078_921368_-\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	5.74491e-113
NZ_CP016769.1\|WP_095671288.1\|929227_929506_-\|YlxR-family-protein	gnl\|CDD\|377288	pfam04296, DUF448, Protein of unknown function (DUF448).	4.38923e-13
NZ_CP016769.1\|WP_095671282.1\|921386_923588_-\|polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|131743	TIGR02696, polyribonucleotide_nucleotidyltransferase, guanosine pentaphosphate synthetase I/polynucleotide phosphorylase. Sohlberg, et al. present characterization of two proteins from Streptomyces coelicolor. The protein in this family was shown to have poly(A) polymerase activity and may be responsible for polyadenylating RNA in this species. Reference 2 showed that a nearly identical plasmid-encoded protein from Streptomyces antibioticus is a bifunctional enzyme that acts also as a guanosine pentaphosphate synthetase.	0
NZ_CP016769.1\|WP_095671836.1\|936045_937191_-\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	gnl\|CDD\|235472	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional.	0
NZ_CP016769.1\|WP_095671283.1\|923770_924040_-\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	1.85487e-49
NZ_CP016769.1\|WP_095671296.1\|938229_939642_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|274522	TIGR03329, Phn_aa_oxid, putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.	9.70213e-69
NZ_CP016769.1\|WP_095671284.1\|924160_925051_-\|bifunctional-riboflavin-kinase/FAD-synthetase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	1.61488e-126
NZ_CP016769.1\|WP_095671292.1\|931935_933669_-\|proline--tRNA-ligase	gnl\|CDD\|236405	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional.	0
NZ_CP016769.1\|WP_095671289.1\|929595_930582_-\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|237061	PRK12327, nusA, transcription elongation factor NusA; Provisional.	1.47714e-152
NZ_CP016769.1\|WP_095671279.1\|919075_919333_-\|NrdH-redoxin	gnl\|CDD\|131255	TIGR02200, conserved_hypothetical_protein, Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.	6.6259e-23
NZ_CP016769.1\|WP_095671294.1\|934897_936046_-\|site-2-protease-family-protein	gnl\|CDD\|308008	pfam02163, Peptidase_M50, Peptidase family M50.	9.4445e-50
NZ_CP016769.1\|WP_095671295.1\|937207_938206_-\|agmatinase	gnl\|CDD\|212516	cd09990, Agmatinase-like, Agmatinase-like family. Agmatinase subfamily currently includes metalloenzymes such as agmatinase, guanidinobutyrase, guanidopropionase, formimidoylglutamase and proclavaminate amidinohydrolase. Agmatinase (agmatine ureohydrolase; SpeB; EC=3.5.3.11) is the key enzyme in the synthesis of polyamine putrescine; it catalyzes hydrolysis of agmatine to yield putrescine and urea. This enzyme has been found in bacteria, archaea and eukaryotes, requiring divalent Mn and sometimes Zn, Co or Ca for activity. In mammals, the highest level of agmatinase mRNA was found in liver and kidney. However, catabolism of agmatine via agmatinase apparently is a not major path; it is mostly catabolized via diamine oxidase. Agmatinase has been shown to be down-regulated in tumor renal cells. Guanidinobutyrase (Gbh, EC=3.5.3.7) catalyzes hydrolysis of 4-guanidinobutanoate to yield 4-aminobutanoate and urea in arginine degradation pathway. Activity has been shown for purified enzyme from Arthrobacter sp. KUJ 8602. Additionally, guanidinobutyrase is able to hydrolyze D-arginine, 3-guanidinopropionate, 5-guanidinovaleriate and L-arginine with much less affinity, having divalent Zn ions for catalysis. Proclavaminate amidinohydrolase (Pah, EC 3.5.3.22) hydrolyzes amidinoproclavaminate to yield proclavaminate and urea in clavulanic acid biosynthesis. Activity has been shown for purified enzyme from Streptomyces clavuligerus. Clavulanic acid is the effective inhibitor of beta-lactamases. This acid is used in combination with the penicillin amoxicillin to prevent antibiotic's beta-lactam rings from hydrolysis, thus keeping the antibiotics biologically active.	4.18878e-115
NZ_CP016769.1\|WP_095671290.1\|930574_931078_-\|ribosome-maturation-factor-RimP	gnl\|CDD\|234627	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed.	7.90788e-39
NZ_CP016769.1\|WP_095671291.1\|931148_931934_-\|TSUP-family-transporter	gnl\|CDD\|182593	PRK10621, PRK10621, hypothetical protein; Provisional.	2.40947e-35
NZ_CP016769.1\|WP_095671278.1\|918048_918765_+\|AzlC-family-ABC-transporter-permease	gnl\|CDD\|224215	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism].	8.13719e-29

>NZ_CP016769.1|WP_095671286.1|925952_926384_-|30S-ribosome-binding-factor-RbfA
MGQSHRTQKVADRIKVVVAQLLETKIKDPRLGFVTVTDARVTGDLQNASIFYTVLGDEEQRAATAAALESAKGVIRSAVGRDLQTRITPSIEFFEDGLPESAKALDSLLDKVHVLDAEVAQLRKNATFAGGADPYKVPKVIED
>NZ_CP016769.1|WP_095671285.1|925069_925942_-|tRNA-pseudouridine(55)-synthase-TruB
MDGFLVVDKAPAMTSHDVVAVARKALGTRKVGHAGTLDPMATGVLVLGFGNGTRLLQYITDGDKSYLATVVLGAATVTDDQEGEVISEADTSMITDEEIRSGLSKMVGEIQQRPSSVSAVKVAGERAYDRVRAGEVFELAARTITISSLEVLDIRRTGARIEIDIDVTCSAGTFIRAIARDLGSELAVGGHLSALRRTRVAGFAIDQAITFDALKAQEFKTLDLADVARATFSVRELALDEVAELSFGRPLPSNTGEDIFAALSPDNRLIALLKNESGKAKPIAVFAAAN
>NZ_CP016769.1|WP_095671284.1|924160_925051_-|bifunctional-riboflavin-kinase/FAD-synthetase
MSTGSVVVIGVFDGVHKGHQLLLDRAKEIADGRSIIALTFDPHPMQVFAPDRAPTMLTTLADRVELLKIHNADQVAVLKFNEKFASMAPEDFVKDVLVGQLSVSTVIVGKNFTYGHKAAGNIDSLIKDSLKFNFTVDVQDLKSEENEAISSSRIRKLVVEGKVEEARTLLSRPHRLDGVVVHGEKRGREIGYPTANLGNIDGQTIPADGVYAGWLTVGINFWPAAISIGTNPTFEGVRGRQVEAYALDQEGLELYDKNASIEFGWRLRDTLKFDGLEPLLVQMKLDCDQARALTEG
>NZ_CP016769.1|WP_095671283.1|923770_924040_-|30S-ribosomal-protein-S15
MALTPEVKKEIVAKYGSSATDTGSPEAQVALLSRRIEDITTHLKTNPHDHHNRRGLLLLVGQRRRILQYLSKTDINRYRAIIEKLGIRR
>NZ_CP016769.1|WP_095671282.1|921386_923588_-|polyribonucleotide-nucleotidyltransferase
MEGQEVQTSVAVIDNGKFGKREIRFETGRLARQAAGAAAVYLDDQTMIFSATTASKTPKDQFDFFPLTVDVEEKMYAVGRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFVKGLRNEVQIVVTVMALDPDHMYDVIAINAASMSTQLAGLPFSGPIGGVRVALIDGQWVAFPNHSQVADAVFDMVVAGRISDGDVAIMMVEAEATAKTIELIKSGQPTPTEEVVAQGLDAAKPFIKILCDAQAKLAKVAAKPTAEFPVFLDYQDDVFAAVEKAAKDDLAKAMTIAGKQERETKIDEISAATKESVSGAFEGREKEVPAAFRSLTKKLVRQRVLRDKIRIDGRGLRDIRALSAEVEVIPRVHGSAIFERGETQILGITTLNMLKMEQQLDTLNPENHKRYMHNYNFPPYSTGETGRVGTPKRREIGHGALAERALVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTLAMLNAGVPLKAPVAGIAMGLISDTVDGKVEYVALTDILGAEDAFGDMDFKVAGTKDFITALQLDTKLDGIPASVLAGALHQAKEARLAILDVMNEAIDTPDEMSPFAPRIISVKIPVDQIGAVIGPKGKIINQIQDETGADISIEDDGTIYIGAVDGPSAEAARAQINAIANPQMPEVGERYLGTVVKLAAFGAFISLMPGKDGLLHVSQIRKMHGGKRIENLEEVMKVGDKIQVEIGEIDPKGKLSLVPVLEDGSTPSAE
>NZ_CP016769.1|WP_095671281.1|920078_921368_-|insulinase-family-protein
MSVRRPVVRTVLPSGLRIVTEEVPSVRSAAIGIWVNVGSRDETPAVAGASHFLEHLLFKGTTRRNALEISATIEAVGGEMNAFTSKEYTCFYARVIDTDLPMAIDVVSDLITSSIVSALDVDAERKVVLEEIAMRDDDPSDLVHDLYAETYYGDTQLGRPILGTIKSISDMTRSSVFNYYKKKYLPQDLVVAVAGNIKHKRVVAMVEEALSRDNFLDVKGSPQIRPNTPVKTKPMQSVGLLTRKTEQAHMFYGMEGVARSDERRFAMGVLASALGGGMSSRLFQEIREKRGLAYSVYAYAQQFAGSGQIGFYAGCNPTKAIEVVEIIREVLADVAENGMSHEEVERAKGAVRGSLVLSQEDSGSRMSRIGKNEIVYGQVMGFDEILKAISRVNPTDVREIANEFLTKSPTLALVGPFKSEAKFEKVLKS
>NZ_CP016769.1|WP_095671280.1|919344_920082_-|4-hydroxy-tetrahydrodipicolinate-reductase
MIKVGVLGARGRMGAEVVKAVTEAADLELVAALDLGDSLETLKSTGAQVVVDFTTPDSVMANLEFLANNGIHAVVGTTGFDAARIATLEKLAAANPSVSILIAPNFAIGAVLMMEFATKAAKYFESAEIIELHHPNKVDAPSGTASRTAELMSKARKEAGLGAMPDATTTSLDGARGATVGDIPVHSVRLRGLIAHQEVLLGGLGETLTIRHDSLDRAGFMPGVLLGVRSVISKPGLTFGLEKFM
>NZ_CP016769.1|WP_095671279.1|919075_919333_-|NrdH-redoxin
MAKADITMYGADWCGDCRRSKRLFEELDIQVNHIDVEADASAAEKVIEINGGAKSIPVIVFSDGTHLTEPSDNDLKAKLEALKII
>NZ_CP016769.1|WP_095671835.1|918770_919079_+|AzlD-domain-containing-protein
MEPFWLAVIGTSLFAFLLKILGHSVPKKWLSNPRILKINSLIPIALLSALVAVQSFTQDSRIVADQRMAGVGVAVLALILRAPFPVVVLSAAATSAALFHLN
>NZ_CP016769.1|WP_095671278.1|918048_918765_+|AzlC-family-ABC-transporter-permease
MALPHRGYLGQNAPVSRVNRATAAQSLSVSLTVGAYGIAFGAASVAAGFTVLQSCLLSLLTFTGASQFAVVGVLGAGGSALSGIATATLLGVRNTLYGLRMAPVLNVRGLKRIFAAQLTIDESTGVALSQEHLGVREARQGFWLTGIGVYIFWNLFTLAGALGAQAMGNPAAWGLDAAVPAAFLGLLWPRLTNKSERLLAVAACALALAMTPYFVPGVPIIATALLAVIFGLGAKIWR
>NZ_CP016769.1|WP_095671288.1|929227_929506_-|YlxR-family-protein
MAAMQRGIKPIRTCIVCRKSQEPSQLLRVNCVDGVITPTSGGKSHGRGAWLHLSCGYIAIDRKAFKSAFKLEQAPDLSKFKVFLDERLKSDN
>NZ_CP016769.1|WP_095671289.1|929595_930582_-|transcription-termination/antitermination-protein-NusA
MNKGQVDVDALIALATHKQMPLEDLITEIEAGVLTAYYETDAPKRQARASIDRETGEIVIWVPTFNELGERVSEDRDEPEGFARTATSTVRQVIKLKMRANNDAEIVGEFSASVGDVISGIVQQGRDPKMINVNLGKVEGRIPPQEQVPGEVYNHGDRIKCFVVEVKQGMKGPEIMLSRSHPALVKQLFALEVPEINDRIVEIMEVAREAGHRTKLAVRSHRAGVSPKGSLIGPMGSRANAVMEELHGEKIDIVDWSEDPAQFVAHALSPAKVTKVEIVDLATRSAKVTVPDYQLSLAIGKDGQNARLAARLTGWRIDIHPDTPTVPR
>NZ_CP016769.1|WP_095671290.1|930574_931078_-|ribosome-maturation-factor-RimP
MSLTQSITQLIEPAVTEAGFFLEEVQLTSAGSHRVVTFIVDGQSPLNLDQVTVVSRLISELLDTATFMDETPFTLEVTSPGVDRPLTLPRHWTKNLTRLVKVTLQDGTVTTGRLTEFNEITATLVENIKGRIKTHTVNFADVKRAVVEIEFNRKEEAQNLNDEAGDE
>NZ_CP016769.1|WP_095671291.1|931148_931934_-|TSUP-family-transporter
MFADLTLYTLVFLAAAAFCAGLIDAIAGGGGLIQLPAMLIGLAKTETVVVLGTNKVPSIFGTTASALTYRRNIRVSSKLLIVMAIPAFIGSMGGASLASLIPTEVLKPLVVALLIAVLIYTWKRPQLGQIESMRHSESKRLKISAVAALVIGFYDGIIGPGTGSFLILLLVAVMGFAFLSASAIAKVVNVATNGGAILVFGVNGEILWKIGLTLAIANVCGGLIGVRIALRGGSGLVRKVFMAITAALILKVAFDTFTALR
>NZ_CP016769.1|WP_095671292.1|931935_933669_-|proline--tRNA-ligase
MLRMSSLFLRTLRDDPADAEVPSHKLLVRAGYIRRIAAGIYSWLPLGVITLRNVENIIREEMDKAGFQEVHFPALLPKEAYEATNRWEEYGPSLFRLQDRKGGDYLLGPTHEEMFTLMVKGEYSSYKDLPLTIYQIQNKFRDEARPRSGIIRGREFVMKDSYSFDLTDEGLGISYDKHRDAYITTFDRLHLKYNIVKAVSGAMGGSKSEEFLAPCPTGEDTYVLCPKCGFAANVEAMVTKVTPADASGVPALEELDTPNTPTIDSLVDVLNSKFGGGFTGASTLKNVLLMADKKAISVLVPGDREVDLKRLQAGLPGVEELRVFEVADFAKHPGLVKGYIGPQDAGKFGITVYADPRVAPGTSWVTGANKKDRHARNVVNGRDFTPDAYVEAAEIREGDSCPECSTAVVIDRAIEIGHIFQLGRKYADALGLTVLDQNGKSQVVTMGSYGIGVSRAVAAIAEQSYDEIGLVWPLEVAPAKVHIVATGKEDLPFDTALDIATKLEASGITVMLDDRRDPSAGVKFKDAELIGIPVIIVVGKSLAEGKIELRNRKSGEKSEVAVGDAISAVTTLIASLS
>NZ_CP016769.1|WP_095671293.1|933690_934842_-|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase
MVDLGIPSAPPAPLHPRRKTKQLRVGSVGVGSDSPVSVQSMCTTLTADVNSTLQQIAELTAAGCQIVRVAVPSQDDADALAQIAKKSQIPVIADIHFQPKYIFAAIDAGCAAVRVNPGNIKQFDDKVKEVAKAAGDAGIPIRIGVNAGSLDPRLLAKYGKATPEALAESALWEASLFEEHGFSNLKISVKHHDPVTMVNAYRILAAKCDYPLHLGVTEAGPAFQATIKSATAFGILLAEGIGDTIRVSMSAPPVEEVKVGISILESLNLRQRKLEIVSCPSCGRAQVDVYTLAEKVQAGLEGMTVPLRVAVMGCVVNGPGEAREADLGVASGNGKGQIFVKGEVIKTVPEAMIVETLIEEAMRLAEEMEAAGVGSGEPSVTVK
>NZ_CP016769.1|WP_095671294.1|934897_936046_-|site-2-protease-family-protein
MQLVGILAFIFALLFSVMVHEFGHYLTARRYGMRVSEFFVGFGKRIWSRQRGETEFGIKAIPAGGYCRIDGMTPRDEMPEGEESRAFYRASSGRKLIVLGAGSFLHFVLGYLLLFVLLAGVGVNQVLPVIDSVAANSAAAAAGFQKGDQIIAIDGDRSTDWQDQLLKIRNSEGRPLTFTIERGGVIQDISAAPRMTDIEDGTSRYVLGIINEFGTKRMSPVSSVTRAAELTWRFTSASATSLVQLPTKIPALWGQTFGGEERDQNGLVGVVGVARVSGQAAASGELDLAERLGTFILIVASLNIFVGLFNLLPILPLDGGHMAVAIADEIRALFAKIRRKPRPAAIDVQVLTPITATVFVILAALTVLLLIADILNPISLNF
>NZ_CP016769.1|WP_095671836.1|936045_937191_-|1-deoxy-D-xylulose-5-phosphate-reductoisomerase
MKDLVILGSTGSIGVQALEIVEANPSLFRVVALTAAGSNTDLLIAQAKKFNVPVIGVTKNADQIKAALPNATVIDGPLASTEIAAITCDVVLNGITGSIGLGPTLAALRVGNRVALANKESLVAGGELVMSLAKPDQLLPVDSEHSALWQSLMGGKKSEVSKLVLTASGGPFRDRTDLSAITVAEALNHPTWSMGPVVTINSATLVNKGLEIIEAHYLFAIPYSQIEAVIHPQSVVHSMVEYIDGSTIAQASPPNMKGPISFAINHPDRVKAATTPIDWTQSHTWTFTPIDNERFPAIDLARRCGALGGGLPAIFNAANEVCVASFISGKIGFTSIVETVEEVVQKLGGKSASAPRDLSDVSAIEEDARAIATELLQKVAR
>NZ_CP016769.1|WP_095671295.1|937207_938206_-|agmatinase
MANHGNMYGPSFTFLGIQQCDLDDPKSYADADVIIVGAPIDSGTSHRSGAKFGPQAIRGGDYLPHDAERPHLALRIDALKALKVYDAGDLLMPPGDLVSSLKVLEEATEKISRAGKIPVILGGDHSIASADVAGIAKHRGLGKISMIHFDAHADTGEDQFGALIGHGTPMRRLIESGQVRGDRFLQLGLRGYWPDDKTLNWMRDQGMRSYEMTEIHHRGLNKVLDESFATLTDGCDGVFLSVDIDVVDPGMAPGTGTPEPGGMTSRELLEAVRRICLELPVVGIDVVEVAPPFDSADITAILANRVVLEALSAIAKRRSGTPYSPTQNLLDR
>NZ_CP016769.1|WP_095671296.1|938229_939642_-|FAD-dependent-oxidoreductase
MATIDPSILKHLSQMQPELYWLDQDPLEPLPHPTLIGDVTSDLCIVGAGYTGLWTALLAKEANPEREVVVVEQRETGAGASGRNGGFCSYSLTHGFMNGYGRFKDEMAVIEKLGRENLDAIEATIKKYGIECDFEWNGELRVAVEDWQMKGLEEEANLRNSFGDNVELLSQQQIQSRIKSPIYKGALWDPDGTALVDPARLVWGLERACISLGVKIFENSHVDRLERTKNGMIVHTPYGSVYATKVALATNVFKSLIKRAHKYVVPVYDFQLVTEPLSAEQLESIGWDEREGLSDAGNQFHYYRMTKDNEILWGGYDAIYNFRGKVRQEYETDAETYAHLAEAFLETFPQLRGIKFTHGWGGAIDTCSRFSPFWGMAYRGRVAYVLGYTGLGVGSTRFGAQVMLDLLDGKDNERTRLKMVRKKPMPFPPEPLRFIFIRLTQWSINQADKHQGKRNLWLKLLDSLGLGFDS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP016769_1	1.1\|928640\|33\|NZ_CP016769\|CRISPRCasFinder	928640-928672	33	MN010762	Gordonia phage MintFen, complete genome	38928-38960	7	0.788
NZ_CP016769_1	1.1\|928640\|33\|NZ_CP016769\|CRISPRCasFinder	928640-928672	33	MT553336	Gordonia phage BlingBling, complete genome	38532-38564	7	0.788
NZ_CP016769_1	1.1\|928640\|33\|NZ_CP016769\|CRISPRCasFinder	928640-928672	33	MN586031	Gordonia phage Gambino, complete genome	40801-40833	7	0.788
NZ_CP016769_1	1.1\|928640\|33\|NZ_CP016769\|CRISPRCasFinder	928640-928672	33	MN369740	Gordonia phage Delian, complete genome	38312-38344	7	0.788
NZ_CP016769_1	1.1\|928640\|33\|NZ_CP016769\|CRISPRCasFinder	928640-928672	33	KU998236	Gordonia phage Blueberry, complete genome	40801-40833	7	0.788
NZ_CP016769_1	1.1\|928640\|33\|NZ_CP016769\|CRISPRCasFinder	928640-928672	33	MN096365	Gordonia phage Samba, complete genome	41150-41182	7	0.788
NZ_CP016769_1	1.1\|928640\|33\|NZ_CP016769\|CRISPRCasFinder	928640-928672	33	MK801724	Gordonia phage PhrostedPhlake, complete genome	38359-38391	7	0.788
NZ_CP016769_1	1.1\|928640\|33\|NZ_CP016769\|CRISPRCasFinder	928640-928672	33	MK864263	Gordonia phage Melba, complete genome	38357-38389	7	0.788
NZ_CP016769_1	1.1\|928640\|33\|NZ_CP016769\|CRISPRCasFinder	928640-928672	33	MK878896	Gordonia phage Begonia, complete genome	40314-40346	7	0.788
NZ_CP016769_1	1.1\|928640\|33\|NZ_CP016769\|CRISPRCasFinder	928640-928672	33	MT723935	Gordonia phage Azula, complete genome	40801-40833	7	0.788
NZ_CP016769_1	1.1\|928640\|33\|NZ_CP016769\|CRISPRCasFinder	928640-928672	33	KX557274	Gordonia phage CaptainKirk2, complete genome	38314-38346	7	0.788
NZ_CP016769_1	1.1\|928640\|33\|NZ_CP016769\|CRISPRCasFinder	928640-928672	33	MH153808	Gordonia phage Petra, complete genome	37577-37609	7	0.788
NZ_CP016769_1	1.1\|928640\|33\|NZ_CP016769\|CRISPRCasFinder	928640-928672	33	MT723936	Gordonia phage Hitter, complete genome	38117-38149	7	0.788
NZ_CP016769_1	1.1\|928640\|33\|NZ_CP016769\|CRISPRCasFinder	928640-928672	33	MH020241	Gordonia phage Fenry, complete genome	39822-39854	8	0.758
NZ_CP016769_1	1.1\|928640\|33\|NZ_CP016769\|CRISPRCasFinder	928640-928672	33	MN234161	Gordonia phage Toast, complete genome	40072-40104	8	0.758
NZ_CP016769_1	1.1\|928640\|33\|NZ_CP016769\|CRISPRCasFinder	928640-928672	33	NC_031265	Gordonia phage Guacamole, complete genome	38541-38573	9	0.727
NZ_CP016769_1	1.1\|928640\|33\|NZ_CP016769\|CRISPRCasFinder	928640-928672	33	MK967389	Gordonia phage JasperJr, complete genome	38541-38573	9	0.727

1. spacer 1.1|928640|33|NZ_CP016769|CRISPRCasFinder matches to MN010762 (Gordonia phage MintFen, complete genome) position: , mismatch: 7, identity: 0.788

cggacgtggaactgcaggtgttgttccaccaga	CRISPR spacer
cgccgggggacctgcaggtgttcttccaccagg	Protospacer
**   * *** *********** *********.

2. spacer 1.1|928640|33|NZ_CP016769|CRISPRCasFinder matches to MT553336 (Gordonia phage BlingBling, complete genome) position: , mismatch: 7, identity: 0.788

cggacgtggaactgcaggtgttgttccaccaga	CRISPR spacer
cgccgggggacctgcaggtgttcttccaccagg	Protospacer
**   * *** *********** *********.

3. spacer 1.1|928640|33|NZ_CP016769|CRISPRCasFinder matches to MN586031 (Gordonia phage Gambino, complete genome) position: , mismatch: 7, identity: 0.788

cggacgtggaactgcaggtgttgttccaccaga	CRISPR spacer
cgccgggggacctgcaggtgttcttccaccagg	Protospacer
**   * *** *********** *********.

4. spacer 1.1|928640|33|NZ_CP016769|CRISPRCasFinder matches to MN369740 (Gordonia phage Delian, complete genome) position: , mismatch: 7, identity: 0.788

cggacgtggaactgcaggtgttgttccaccaga	CRISPR spacer
cgccgggggacctgcaggtgttcttccaccagg	Protospacer
**   * *** *********** *********.

5. spacer 1.1|928640|33|NZ_CP016769|CRISPRCasFinder matches to KU998236 (Gordonia phage Blueberry, complete genome) position: , mismatch: 7, identity: 0.788

cggacgtggaactgcaggtgttgttccaccaga	CRISPR spacer
cgccgggggacctgcaggtgttcttccaccagg	Protospacer
**   * *** *********** *********.

6. spacer 1.1|928640|33|NZ_CP016769|CRISPRCasFinder matches to MN096365 (Gordonia phage Samba, complete genome) position: , mismatch: 7, identity: 0.788

cggacgtggaactgcaggtgttgttccaccaga	CRISPR spacer
cgccgggggacctgcaggtgttcttccaccagg	Protospacer
**   * *** *********** *********.

7. spacer 1.1|928640|33|NZ_CP016769|CRISPRCasFinder matches to MK801724 (Gordonia phage PhrostedPhlake, complete genome) position: , mismatch: 7, identity: 0.788

cggacgtggaactgcaggtgttgttccaccaga	CRISPR spacer
cgccgggggacctgcaggtgttcttccaccagg	Protospacer
**   * *** *********** *********.

8. spacer 1.1|928640|33|NZ_CP016769|CRISPRCasFinder matches to MK864263 (Gordonia phage Melba, complete genome) position: , mismatch: 7, identity: 0.788

cggacgtggaactgcaggtgttgttccaccaga	CRISPR spacer
cgccgggggacctgcaggtgttcttccaccagg	Protospacer
**   * *** *********** *********.

9. spacer 1.1|928640|33|NZ_CP016769|CRISPRCasFinder matches to MK878896 (Gordonia phage Begonia, complete genome) position: , mismatch: 7, identity: 0.788

cggacgtggaactgcaggtgttgttccaccaga	CRISPR spacer
cgccgggggacctgcaggtgttcttccaccagg	Protospacer
**   * *** *********** *********.

10. spacer 1.1|928640|33|NZ_CP016769|CRISPRCasFinder matches to MT723935 (Gordonia phage Azula, complete genome) position: , mismatch: 7, identity: 0.788

cggacgtggaactgcaggtgttgttccaccaga	CRISPR spacer
cgccgggggacctgcaggtgttcttccaccagg	Protospacer
**   * *** *********** *********.

11. spacer 1.1|928640|33|NZ_CP016769|CRISPRCasFinder matches to KX557274 (Gordonia phage CaptainKirk2, complete genome) position: , mismatch: 7, identity: 0.788

cggacgtggaactgcaggtgttgttccaccaga	CRISPR spacer
cgccgggggacctgcaggtgttcttccaccagg	Protospacer
**   * *** *********** *********.

12. spacer 1.1|928640|33|NZ_CP016769|CRISPRCasFinder matches to MH153808 (Gordonia phage Petra, complete genome) position: , mismatch: 7, identity: 0.788

cggacgtggaactgcaggtgttgttccaccaga	CRISPR spacer
cgccgggggacctgcaggtgttcttccaccagg	Protospacer
**   * *** *********** *********.

13. spacer 1.1|928640|33|NZ_CP016769|CRISPRCasFinder matches to MT723936 (Gordonia phage Hitter, complete genome) position: , mismatch: 7, identity: 0.788

cggacgtggaactgcaggtgttgttccaccaga	CRISPR spacer
cgccgggggacctgcaggtgttcttccaccagg	Protospacer
**   * *** *********** *********.

14. spacer 1.1|928640|33|NZ_CP016769|CRISPRCasFinder matches to MH020241 (Gordonia phage Fenry, complete genome) position: , mismatch: 8, identity: 0.758

cggacgtggaactgcaggtgttgttccaccaga	CRISPR spacer
cgccgggagacctgcaggtgttcttccaccagg	Protospacer
**   * .** *********** *********.

15. spacer 1.1|928640|33|NZ_CP016769|CRISPRCasFinder matches to MN234161 (Gordonia phage Toast, complete genome) position: , mismatch: 8, identity: 0.758

cggacgtggaactgcaggtgttgttccaccaga	CRISPR spacer
cccccggcgatctgcaggtgttcttccaccagg	Protospacer
*   **  ** *********** *********.

16. spacer 1.1|928640|33|NZ_CP016769|CRISPRCasFinder matches to NC_031265 (Gordonia phage Guacamole, complete genome) position: , mismatch: 9, identity: 0.727

cggacgtggaactgcaggtgttgttccaccaga	CRISPR spacer
caccgggagacctgcaggtgttcttccaccagg	Protospacer
*.   * .** *********** *********.

17. spacer 1.1|928640|33|NZ_CP016769|CRISPRCasFinder matches to MK967389 (Gordonia phage JasperJr, complete genome) position: , mismatch: 9, identity: 0.727

cggacgtggaactgcaggtgttgttccaccaga	CRISPR spacer
caccgggagacctgcaggtgttcttccaccagg	Protospacer
*.   * .** *********** *********.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

29380 : 40884

Indivirus(14.29%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_095670483.1\|29380_32152_+	type I DNA topoisomerase	A0A1V0SCS0	Indivirus	6.3e-111	33.2
WP_095670484.1\|32161_32491_+	GDP-mannose 4,6-dehydratase	A0A1V0SG19	Hokovirus	1.6e-05	32.6
WP_095670485.1\|33228_34197_+	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	1.2e-40	35.6
WP_190276884.1\|34197_34593_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_095670487.1\|34589_34946_-	type II toxin-antitoxin system prevent-host-death family antitoxin	A0A2I6AZZ6	Macacine_betaherpesvirus	7.0e-07	37.9
WP_095670488.1\|35054_37100_+	dTMP kinase	M1PSC7	Streptococcus_phage	6.2e-31	37.8
WP_095670489.1\|37100_38273_+	DNA polymerase III subunit delta'	A0A1V0DYC6	Dinoroseobacter_phage	4.5e-10	26.0
WP_095670490.1\|38272_39796_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_095670491.1\|39792_40884_+	acyltransferase	C6ZR20	Salmonella_phage	4.8e-06	24.9

DBSCAN-SWA_2

659258 : 667406

Cedratvirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_095671053.1\|659258_660011_+	Fe-S cluster assembly ATPase SufC	A0A1M7XV31	Cedratvirus	7.1e-09	34.5
WP_095671054.1\|660031_661276_+	cysteine desulfurase	Q2XUY6	environmental_halophage	2.7e-101	43.6
WP_095671055.1\|661275_661716_+	SUF system NifU family Fe-S cluster assembly protein	A0A0K1LS29	Mycobacterium_phage	2.8e-21	45.9
WP_095671056.1\|661755_662067_+	metal-sulfur cluster assembly factor	NA	NA	NA	NA
WP_190276915.1\|662122_663985_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.5e-44	26.3
WP_095671058.1\|663925_664672_-	SURF1 family protein	NA	NA	NA	NA
WP_095671059.1\|664711_665005_-	DUF3099 domain-containing protein	NA	NA	NA	NA
WP_095671060.1\|665087_665804_+	3-oxoacyl-ACP reductase FabG	Q06VL0	Trichoplusia_ni_ascovirus	2.6e-08	26.4
WP_095671061.1\|665804_666572_+	enoyl-ACP reductase FabI	NA	NA	NA	NA
WP_095671062.1\|666815_667406_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	4.9e-13	31.9

DBSCAN-SWA_3

1040496 : 1050191

Bacillus_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_095671378.1\|1040496_1042320_-	adenylyl-sulfate kinase	A0A076FFS6	Aureococcus_anophage	1.0e-24	24.1
WP_095671379.1\|1042319_1043225_-	sulfate adenylyltransferase subunit CysD	A0A218KDB3	Bacillus_phage	6.2e-07	27.4
WP_095671380.1\|1043254_1044094_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	F8WPX6	Bacillus_phage	3.9e-24	29.1
WP_095671381.1\|1044097_1044556_-	6,7-dimethyl-8-ribityllumazine synthase	NA	NA	NA	NA
WP_095671382.1\|1044555_1045749_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2I2L4Y7	Orpheovirus	2.0e-77	40.0
WP_095671383.1\|1045745_1046354_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.6e-30	39.5
WP_095671384.1\|1046353_1047373_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	2.3e-42	36.2
WP_095671385.1\|1047626_1049174_-	inositol monophosphatase	NA	NA	NA	NA
WP_095671386.1\|1049177_1050191_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.2e-29	35.7

DBSCAN-SWA_4

1149332 : 1161398

uncultured_virus(22.22%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_190276874.1\|1149332_1151642_-	DNA helicase PcrA	A7KV33	Bacillus_phage	1.1e-121	37.6
WP_095671478.1\|1151640_1152366_+	PIG-L family deacetylase	NA	NA	NA	NA
WP_095671856.1\|1152379_1153009_-	peptidylprolyl isomerase	A0A1V0SCU1	Indivirus	1.4e-10	35.5
WP_095671479.1\|1153081_1154635_-	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	1.2e-13	28.4
WP_095671480.1\|1154635_1155745_-	GuaB3 family IMP dehydrogenase-related protein	A0A0N9Q9A5	Chrysochromulina_ericina_virus	1.6e-09	44.9
WP_095671481.1\|1155756_1156872_-	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	6.8e-56	31.6
WP_095671482.1\|1156916_1157792_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_095671483.1\|1157940_1158240_+	WhiB family transcriptional regulator	A0A0R8V0E7	Thermobifida_phage	2.0e-10	45.6
WP_095671484.1\|1158308_1159946_-	chaperonin GroEL	A0A240F779	uncultured_virus	6.3e-151	55.5
WP_095526936.1\|1159948_1160242_-	co-chaperone GroES	A0A221S3C8	uncultured_virus	3.9e-19	56.0
WP_095671485.1\|1160366_1161398_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	5.5e-60	41.9

DBSCAN-SWA_5

1167942 : 1177526

Planktothrix_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_095671493.1\|1167942_1168656_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.2e-15	31.1
WP_095671494.1\|1168648_1169437_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	9.1e-15	29.7
WP_095671495.1\|1169433_1170534_-	alanine racemase	A0A0P0YM39	Yellowstone_lake_mimivirus	1.1e-31	31.5
WP_095671496.1\|1170530_1170872_-	holo-ACP synthase	NA	NA	NA	NA
WP_095671857.1\|1170892_1171528_-	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_095671497.1\|1171563_1173408_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	A7IW18	Paramecium_bursaria_Chlorella_virus	1.7e-104	38.6
WP_095671498.1\|1173414_1174791_-	phosphoglucosamine mutase	A0A127AWJ1	Bacillus_phage	6.3e-19	24.6
WP_095671499.1\|1174809_1175304_-	30S ribosomal protein S9	NA	NA	NA	NA
WP_095671500.1\|1175318_1175771_-	50S ribosomal protein L13	NA	NA	NA	NA
WP_095671501.1\|1175924_1177526_-	ABC-F family ATP-binding cassette domain-containing protein	A0A2H4UUX5	Bodo_saltans_virus	3.1e-25	23.9

DBSCAN-SWA_6

1428316 : 1435283

Bacillus_phage(33.33%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_095671738.1\|1428316_1429867_+	serine/threonine-protein kinase	A0A146JFA3	Tokyovirus	3.6e-23	30.0
WP_095671739.1\|1429868_1430498_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	4.5e-49	50.0
WP_095671740.1\|1430597_1430864_+	cell division protein CrgA	NA	NA	NA	NA
WP_095671741.1\|1430997_1431714_+	response regulator transcription factor	W8CYM9	Bacillus_phage	2.5e-35	37.8
WP_095671742.1\|1431722_1433171_+	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	7.5e-31	30.5
WP_095671743.1\|1433167_1434079_-\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_095671744.1\|1434085_1434637_-	LemA family protein	A0A0C5K8T5	Enterococcus_phage	2.3e-12	29.8
WP_095671745.1\|1434704_1435283_-	dCTP deaminase	I4AZP2	Saccharomonospora_phage	3.2e-73	68.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage