CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP021200	Taylorella equigenitalis strain 79-1587 chromosome, complete genome	4 crisprs	cas3,cas2,cas1,cas4,cas7,cas8c,cas5,DEDDh	0	5	5	2

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP021200_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021200_1

225725-227879

TypeI

Consensus_repeat	Method
GTTTAAACACACAGCCACGCGTACGTGGCTGA	CRISPRCasFinder
GTTTAAACACACAGCCACGCGTACGTGGCTGA	CRT
GTTTAAACACACAGCCACGCGTACGTGGCTGA	PILER-CR

32 spacers

cas3,cas2,cas1,cas4,cas7,cas8c,cas5

The CRISPR arrays of NZ_CP021200_1

>merge|NZ_CP021200|1|225725-227879|CRISPRCasFinder,CRT,PILER-CR
GTTTAAACACACAGTCAAGCGAACGTGACTGAACTTTTGAAGTTTACTTCCGAATAAGTAGTTTAGAAGTTTAAACACACAGCCACGCGTACGTGGCTGATCAGTAAGTGCCATTCAACCCGTCCTTCCAGTTAGTTTAAACACACAGCCACGCGTACGTGGCTGACTGGTTCGGTGGTGACCGTATAGTTTCGGCAGAGTTTAAACACACAGCCACGCGTACGTGGCTGACCAATTAGTGCTTTTTCTATTCGATGTTTTTTACGTTTAAACACACAGCCACGCGTACGTGGCTGAGAATTTGGGGTTACACAAGCGATGATTGAGAAAAGTTTAAACACACAGCCACGCGTACGTGGCTGATCAGTAAGTGCCATTCAACCCGTCCTTCCAGTTAGTTTAAACACACAGCCACGCGTACGTGGCTGACTGGTTCGGTGGTGACCGTATAGTTTCGGCAGAGTTTAAACACACAGCCACGCGTACGTGGCTGACCAATTAGTGCTTTTTCTATTCGATGTTTTTTACGTTTAAACACACAGCCACGCGTACGTGGCTGAGAATTTGGGGTTACACAAGCGATGATTGAGAAAAGTTTAAACACACAGCCACGCGTACGTGGCTGAAATGAAGTATATTGTTGGACGAGATTACACAATCGTTTAAACACACAGCCACGCGTACGTGGCTGATTGCATAAAAAATGAAGTGGCATTAATTGCCATAGGTTTAAACACACAGCCACGCGTACGTGGCTGACGACCTTTAAGCAATCGTAAAGTTGGTGACGTTCGTTTAAACACACAGCCACGCGTACGTGGCTGATCTGTTAATTTGCAAGCGTATCCAGTCGAAACTTCGTTTAAACACACAGCCACGCGTACGTGGCTGATCTGTTAATTTGCAAGCGTATCCAGTCGAAACTTCGTTTAAACACACAGCCACGCGTACGTGGCTGACTTGATTCATTTTTTTTGTCCTTTTACTTAATTAAGTTTAAACACACAGCCACGCGTACGTGGCTGACCAAGTTTTACGGTGTACCCATTCGATTATTTGCGGTTTAAACACACAGCCACGCGTACGTGGCTGATTATGGACCGTCGCACTAAGGTCTACTTGGACATGTTTAAACACACAGCCACGCGTACGTGGCTGATCGAGCCATACTTGATAAGCTGTTTTCCAGCGGGGTTTAAACACACAGCCACGCGTACGTGGCTGATTGTAAGCTGAAATAGCTCTGTTAATGAATCTTGGTTTAAACACACAGCCACGCGTACGTGGCTGAACCTTGCGATTGGTGTCTTAGTTAGACTCTCGTCGTTTAAACACACAGCCACGCGTACGTGGCTGATTGATTCATCTGCAAATCCTCTAATGGACTCTGTTGTTTAAACACACAGCCACGCGTACGTGGCTGACGAACCAATCAGCAACCGTGCTCATATTGTCACGTGTTTAAACACACAGCCACGCGTACGTGGCTGAATCAAGCAGGTGCTAGCATTTCCGCGACATTAGCCGTTTAAACACACAGCCACGCGTACGTGGCTGAATATTATTTTCAACTAACAAGTTTTTAATCTCAGGTTTAAACACACAGCCACGCGTACGTGGCTGAAGGGTTCCCTTGATGCTGTAGTTTCGAACGTTCCGTTTAAACACACAGCCACGCGTACGTGGCTGAATCAAGCAGGTGCTAGCATTTCCGCGACATTAGCCGTTTAAACACACAGCCACGCGTACGTGGCTGAATATTATTTTCAACTAACAAGTTTTTAATCTCAGGTTTAAACACACAGCCACGCGTACGTGGCTGAATGTCATAAAAGTTAAGGCGTGTGAATTACTTGCAGTTTAAACACACAGCCACGCGTACGTGGCTGAATAGATGACCGTGAAATCGATTGATGAGCTCATCGTTTAAACACACAGCCACGCGTACGTGGCTGAGAGAATTAATCAGACAGCCCGAATCTATTCAAGCGTTTAAACACACAGCCACGCGTACGTGGCTGAGAGTTAACAATTAAAATAGTCTCGCAAAATGTATAGTTTAAACACACAGCCACGCGTACGTGGCTGAACCGAAATGGTTGAAGTTAAGGTGGATAGATAATGTTTAAACACACAGCCACGCGTACGTGGCTGA

>NZ_CP021200|1|1|225725-227879|CRISPRCasFinder
GTTTAAACACACAGTCAAGCGAACGTGACTGA	ACTTTTGAAGTTTACTTCCGAATAAGTAGTTTAGAA
GTTTAAACACACAGCCACGCGTACGTGGCTGA	TCAGTAAGTGCCATTCAACCCGTCCTTCCAGTTA
GTTTAAACACACAGCCACGCGTACGTGGCTGA	CTGGTTCGGTGGTGACCGTATAGTTTCGGCAGA
GTTTAAACACACAGCCACGCGTACGTGGCTGA	CCAATTAGTGCTTTTTCTATTCGATGTTTTTTAC
GTTTAAACACACAGCCACGCGTACGTGGCTGA	GAATTTGGGGTTACACAAGCGATGATTGAGAAAA
GTTTAAACACACAGCCACGCGTACGTGGCTGA	TCAGTAAGTGCCATTCAACCCGTCCTTCCAGTTA
GTTTAAACACACAGCCACGCGTACGTGGCTGA	CTGGTTCGGTGGTGACCGTATAGTTTCGGCAGA
GTTTAAACACACAGCCACGCGTACGTGGCTGA	CCAATTAGTGCTTTTTCTATTCGATGTTTTTTAC
GTTTAAACACACAGCCACGCGTACGTGGCTGA	GAATTTGGGGTTACACAAGCGATGATTGAGAAAA
GTTTAAACACACAGCCACGCGTACGTGGCTGA	AATGAAGTATATTGTTGGACGAGATTACACAATC
GTTTAAACACACAGCCACGCGTACGTGGCTGA	TTGCATAAAAAATGAAGTGGCATTAATTGCCATAG
GTTTAAACACACAGCCACGCGTACGTGGCTGA	CGACCTTTAAGCAATCGTAAAGTTGGTGACGTTC
GTTTAAACACACAGCCACGCGTACGTGGCTGA	TCTGTTAATTTGCAAGCGTATCCAGTCGAAACTTC
GTTTAAACACACAGCCACGCGTACGTGGCTGA	TCTGTTAATTTGCAAGCGTATCCAGTCGAAACTTC
GTTTAAACACACAGCCACGCGTACGTGGCTGA	CTTGATTCATTTTTTTTGTCCTTTTACTTAATTAA
GTTTAAACACACAGCCACGCGTACGTGGCTGA	CCAAGTTTTACGGTGTACCCATTCGATTATTTGCG
GTTTAAACACACAGCCACGCGTACGTGGCTGA	TTATGGACCGTCGCACTAAGGTCTACTTGGACAT
GTTTAAACACACAGCCACGCGTACGTGGCTGA	TCGAGCCATACTTGATAAGCTGTTTTCCAGCGGG
GTTTAAACACACAGCCACGCGTACGTGGCTGA	TTGTAAGCTGAAATAGCTCTGTTAATGAATCTTG
GTTTAAACACACAGCCACGCGTACGTGGCTGA	ACCTTGCGATTGGTGTCTTAGTTAGACTCTCGTC
GTTTAAACACACAGCCACGCGTACGTGGCTGA	TTGATTCATCTGCAAATCCTCTAATGGACTCTGTT
GTTTAAACACACAGCCACGCGTACGTGGCTGA	CGAACCAATCAGCAACCGTGCTCATATTGTCACGT
GTTTAAACACACAGCCACGCGTACGTGGCTGA	ATCAAGCAGGTGCTAGCATTTCCGCGACATTAGCC
GTTTAAACACACAGCCACGCGTACGTGGCTGA	ATATTATTTTCAACTAACAAGTTTTTAATCTCAG
GTTTAAACACACAGCCACGCGTACGTGGCTGA	AGGGTTCCCTTGATGCTGTAGTTTCGAACGTTCC
GTTTAAACACACAGCCACGCGTACGTGGCTGA	ATCAAGCAGGTGCTAGCATTTCCGCGACATTAGCC
GTTTAAACACACAGCCACGCGTACGTGGCTGA	ATATTATTTTCAACTAACAAGTTTTTAATCTCAG
GTTTAAACACACAGCCACGCGTACGTGGCTGA	ATGTCATAAAAGTTAAGGCGTGTGAATTACTTGCA
GTTTAAACACACAGCCACGCGTACGTGGCTGA	ATAGATGACCGTGAAATCGATTGATGAGCTCATC
GTTTAAACACACAGCCACGCGTACGTGGCTGA	GAGAATTAATCAGACAGCCCGAATCTATTCAAGC
GTTTAAACACACAGCCACGCGTACGTGGCTGA	GAGTTAACAATTAAAATAGTCTCGCAAAATGTATA
GTTTAAACACACAGCCACGCGTACGTGGCTGA	ACCGAAATGGTTGAAGTTAAGGTGGATAGATAAT
GTTTAAACACACAGCCACGCGTACGTGGCTGA

>NZ_CP021200|1|1|225725-227879|CRT
GTTTAAACACACAGTCAAGCGAACGTGACTGA	ACTTTTGAAGTTTACTTCCGAATAAGTAGTTTAGAA
GTTTAAACACACAGCCACGCGTACGTGGCTGA	TCAGTAAGTGCCATTCAACCCGTCCTTCCAGTTA
GTTTAAACACACAGCCACGCGTACGTGGCTGA	CTGGTTCGGTGGTGACCGTATAGTTTCGGCAGA
GTTTAAACACACAGCCACGCGTACGTGGCTGA	CCAATTAGTGCTTTTTCTATTCGATGTTTTTTAC
GTTTAAACACACAGCCACGCGTACGTGGCTGA	GAATTTGGGGTTACACAAGCGATGATTGAGAAAA
GTTTAAACACACAGCCACGCGTACGTGGCTGA	TCAGTAAGTGCCATTCAACCCGTCCTTCCAGTTA
GTTTAAACACACAGCCACGCGTACGTGGCTGA	CTGGTTCGGTGGTGACCGTATAGTTTCGGCAGA
GTTTAAACACACAGCCACGCGTACGTGGCTGA	CCAATTAGTGCTTTTTCTATTCGATGTTTTTTAC
GTTTAAACACACAGCCACGCGTACGTGGCTGA	GAATTTGGGGTTACACAAGCGATGATTGAGAAAA
GTTTAAACACACAGCCACGCGTACGTGGCTGA	AATGAAGTATATTGTTGGACGAGATTACACAATC
GTTTAAACACACAGCCACGCGTACGTGGCTGA	TTGCATAAAAAATGAAGTGGCATTAATTGCCATAG
GTTTAAACACACAGCCACGCGTACGTGGCTGA	CGACCTTTAAGCAATCGTAAAGTTGGTGACGTTC
GTTTAAACACACAGCCACGCGTACGTGGCTGA	TCTGTTAATTTGCAAGCGTATCCAGTCGAAACTTC
GTTTAAACACACAGCCACGCGTACGTGGCTGA	TCTGTTAATTTGCAAGCGTATCCAGTCGAAACTTC
GTTTAAACACACAGCCACGCGTACGTGGCTGA	CTTGATTCATTTTTTTTGTCCTTTTACTTAATTAA
GTTTAAACACACAGCCACGCGTACGTGGCTGA	CCAAGTTTTACGGTGTACCCATTCGATTATTTGCG
GTTTAAACACACAGCCACGCGTACGTGGCTGA	TTATGGACCGTCGCACTAAGGTCTACTTGGACAT
GTTTAAACACACAGCCACGCGTACGTGGCTGA	TCGAGCCATACTTGATAAGCTGTTTTCCAGCGGG
GTTTAAACACACAGCCACGCGTACGTGGCTGA	TTGTAAGCTGAAATAGCTCTGTTAATGAATCTTG
GTTTAAACACACAGCCACGCGTACGTGGCTGA	ACCTTGCGATTGGTGTCTTAGTTAGACTCTCGTC
GTTTAAACACACAGCCACGCGTACGTGGCTGA	TTGATTCATCTGCAAATCCTCTAATGGACTCTGTT
GTTTAAACACACAGCCACGCGTACGTGGCTGA	CGAACCAATCAGCAACCGTGCTCATATTGTCACGT
GTTTAAACACACAGCCACGCGTACGTGGCTGA	ATCAAGCAGGTGCTAGCATTTCCGCGACATTAGCC
GTTTAAACACACAGCCACGCGTACGTGGCTGA	ATATTATTTTCAACTAACAAGTTTTTAATCTCAG
GTTTAAACACACAGCCACGCGTACGTGGCTGA	AGGGTTCCCTTGATGCTGTAGTTTCGAACGTTCC
GTTTAAACACACAGCCACGCGTACGTGGCTGA	ATCAAGCAGGTGCTAGCATTTCCGCGACATTAGCC
GTTTAAACACACAGCCACGCGTACGTGGCTGA	ATATTATTTTCAACTAACAAGTTTTTAATCTCAG
GTTTAAACACACAGCCACGCGTACGTGGCTGA	ATGTCATAAAAGTTAAGGCGTGTGAATTACTTGCA
GTTTAAACACACAGCCACGCGTACGTGGCTGA	ATAGATGACCGTGAAATCGATTGATGAGCTCATC
GTTTAAACACACAGCCACGCGTACGTGGCTGA	GAGAATTAATCAGACAGCCCGAATCTATTCAAGC
GTTTAAACACACAGCCACGCGTACGTGGCTGA	GAGTTAACAATTAAAATAGTCTCGCAAAATGTATA
GTTTAAACACACAGCCACGCGTACGTGGCTGA	ACCGAAATGGTTGAAGTTAAGGTGGATAGATAAT
GTTTAAACACACAGCCACGCGTACGTGGCTGA

>NZ_CP021200|1|1|225793-227879|PILER-CR
GTTTAAACACACAGCCACGCGTACGTGGCTGA	TCAGTAAGTGCCATTCAACCCGTCCTTCCAGTTA
GTTTAAACACACAGCCACGCGTACGTGGCTGA	CTGGTTCGGTGGTGACCGTATAGTTTCGGCAGA
GTTTAAACACACAGCCACGCGTACGTGGCTGA	CCAATTAGTGCTTTTTCTATTCGATGTTTTTTAC
GTTTAAACACACAGCCACGCGTACGTGGCTGA	GAATTTGGGGTTACACAAGCGATGATTGAGAAAA
GTTTAAACACACAGCCACGCGTACGTGGCTGA	TCAGTAAGTGCCATTCAACCCGTCCTTCCAGTTA
GTTTAAACACACAGCCACGCGTACGTGGCTGA	CTGGTTCGGTGGTGACCGTATAGTTTCGGCAGA
GTTTAAACACACAGCCACGCGTACGTGGCTGA	CCAATTAGTGCTTTTTCTATTCGATGTTTTTTAC
GTTTAAACACACAGCCACGCGTACGTGGCTGA	GAATTTGGGGTTACACAAGCGATGATTGAGAAAA
GTTTAAACACACAGCCACGCGTACGTGGCTGA	AATGAAGTATATTGTTGGACGAGATTACACAATC
GTTTAAACACACAGCCACGCGTACGTGGCTGA	TTGCATAAAAAATGAAGTGGCATTAATTGCCATAG
GTTTAAACACACAGCCACGCGTACGTGGCTGA	CGACCTTTAAGCAATCGTAAAGTTGGTGACGTTC
GTTTAAACACACAGCCACGCGTACGTGGCTGA	TCTGTTAATTTGCAAGCGTATCCAGTCGAAACTTC
GTTTAAACACACAGCCACGCGTACGTGGCTGA	TCTGTTAATTTGCAAGCGTATCCAGTCGAAACTTC
GTTTAAACACACAGCCACGCGTACGTGGCTGA	CTTGATTCATTTTTTTTGTCCTTTTACTTAATTAA
GTTTAAACACACAGCCACGCGTACGTGGCTGA	CCAAGTTTTACGGTGTACCCATTCGATTATTTGCG
GTTTAAACACACAGCCACGCGTACGTGGCTGA	TTATGGACCGTCGCACTAAGGTCTACTTGGACAT
GTTTAAACACACAGCCACGCGTACGTGGCTGA	TCGAGCCATACTTGATAAGCTGTTTTCCAGCGGG
GTTTAAACACACAGCCACGCGTACGTGGCTGA	TTGTAAGCTGAAATAGCTCTGTTAATGAATCTTG
GTTTAAACACACAGCCACGCGTACGTGGCTGA	ACCTTGCGATTGGTGTCTTAGTTAGACTCTCGTC
GTTTAAACACACAGCCACGCGTACGTGGCTGA	TTGATTCATCTGCAAATCCTCTAATGGACTCTGTT
GTTTAAACACACAGCCACGCGTACGTGGCTGA	CGAACCAATCAGCAACCGTGCTCATATTGTCACGT
GTTTAAACACACAGCCACGCGTACGTGGCTGA	ATCAAGCAGGTGCTAGCATTTCCGCGACATTAGCC
GTTTAAACACACAGCCACGCGTACGTGGCTGA	ATATTATTTTCAACTAACAAGTTTTTAATCTCAG
GTTTAAACACACAGCCACGCGTACGTGGCTGA	AGGGTTCCCTTGATGCTGTAGTTTCGAACGTTCC
GTTTAAACACACAGCCACGCGTACGTGGCTGA	ATCAAGCAGGTGCTAGCATTTCCGCGACATTAGCC
GTTTAAACACACAGCCACGCGTACGTGGCTGA	ATATTATTTTCAACTAACAAGTTTTTAATCTCAG
GTTTAAACACACAGCCACGCGTACGTGGCTGA	ATGTCATAAAAGTTAAGGCGTGTGAATTACTTGCA
GTTTAAACACACAGCCACGCGTACGTGGCTGA	ATAGATGACCGTGAAATCGATTGATGAGCTCATC
GTTTAAACACACAGCCACGCGTACGTGGCTGA	GAGAATTAATCAGACAGCCCGAATCTATTCAAGC
GTTTAAACACACAGCCACGCGTACGTGGCTGA	GAGTTAACAATTAAAATAGTCTCGCAAAATGTATA
GTTTAAACACACAGCCACGCGTACGTGGCTGA	ACCGAAATGGTTGAAGTTAAGGTGGATAGATAAT
GTTTAAACACACAGCCACGCGTACGTGGCTGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021200.1\|WP_014840106.1\|232720_233437_-\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
NZ_CP021200.1\|WP_014840097.1\|219566_220292_+\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
NZ_CP021200.1\|WP_044953910.1\|222868_225259_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP021200.1\|WP_126476007.1\|234298_237160_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224037
NZ_CP021200.1\|WP_013522000.1\|237400_239035_+\|peptide-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|185059
NZ_CP021200.1\|WP_013521986.1\|215150_216173_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|376971
NZ_CP021200.1\|WP_014840103.1\|229345_229975_-\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NZ_CP021200.1\|WP_013522001.1\|239096_240017_+\|oligopeptide-ABC-transporter-permease-OppB	unknown	unknown	gnl\|CDD\|181886
NZ_CP021200.1\|WP_014840104.1\|229964_230813_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NZ_CP021200.1\|WP_014840096.1\|217516_219559_+\|primosomal-protein-N'	unknown	unknown	gnl\|CDD\|235514
NZ_CP021200.1\|WP_013521983.1\|212188_212755_-\|ATP-dependent-protease-subunit-HslV	unknown	unknown	gnl\|CDD\|235477
NZ_CP021200.1\|WP_014840098.1\|220414_220927_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224292
NZ_CP021200.1\|WP_014840099.1\|221219_222866_+\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|237969
NZ_CP021200.1\|WP_014840105.1\|230825_232718_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	gnl\|CDD\|187887
NZ_CP021200.1\|WP_014840093.1\|212885_214226_+\|esterase-like-activity-of-phytase-family-protein	unknown	unknown	gnl\|CDD\|226675
NZ_CP021200.1\|WP_014840094.1\|214294_214780_-\|RNA-polymerase-binding-protein-DksA	unknown	unknown	gnl\|CDD\|274124
NZ_CP021200.1\|WP_014840095.1\|216217_217288_+\|uroporphyrinogen-decarboxylase	unknown	unknown	gnl\|CDD\|234644
NZ_CP021200.1\|WP_013522002.1\|240026_240944_+\|oligopeptide-ABC-transporter-permease-OppC	unknown	unknown	gnl\|CDD\|185304
NZ_CP021200.1\|WP_014840101.1\|228052_228346_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP021200.1\|WP_044953912.1\|228348_229362_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360

Protein	Function_ID	Function_description	E-value
NZ_CP021200.1\|WP_014840106.1\|232720_233437_-\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	9.36082e-82
NZ_CP021200.1\|WP_014840097.1\|219566_220292_+\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	2.01833e-63
NZ_CP021200.1\|WP_044953910.1\|222868_225259_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.45947e-54
NZ_CP021200.1\|WP_126476007.1\|234298_237160_+\|ATP-binding-protein	gnl\|CDD\|224037	COG1112, COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair].	1.69517e-18
NZ_CP021200.1\|WP_013522000.1\|237400_239035_+\|peptide-ABC-transporter-substrate-binding-protein	gnl\|CDD\|185059	PRK15104, PRK15104, oligopeptide ABC transporter substrate-binding protein OppA; Provisional.	0
NZ_CP021200.1\|WP_013521986.1\|215150_216173_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|376971	pfam02954, HTH_8, Bacterial regulatory protein, Fis family.	5.52245e-07
NZ_CP021200.1\|WP_014840103.1\|229345_229975_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	9.70567e-30
NZ_CP021200.1\|WP_013522001.1\|239096_240017_+\|oligopeptide-ABC-transporter-permease-OppB	gnl\|CDD\|181886	PRK09471, oppB, oligopeptide ABC transporter permease OppB.	0
NZ_CP021200.1\|WP_014840104.1\|229964_230813_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	9.08852e-104
NZ_CP021200.1\|WP_014840096.1\|217516_219559_+\|primosomal-protein-N'	gnl\|CDD\|235514	PRK05580, PRK05580, primosome assembly protein PriA; Validated.	0
NZ_CP021200.1\|WP_013521983.1\|212188_212755_-\|ATP-dependent-protease-subunit-HslV	gnl\|CDD\|235477	PRK05456, PRK05456, ATP-dependent protease subunit HslV.	1.21023e-127
NZ_CP021200.1\|WP_014840098.1\|220414_220927_+\|ATP-binding-protein	gnl\|CDD\|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	4.85897e-20
NZ_CP021200.1\|WP_014840099.1\|221219_222866_+\|U32-family-peptidase	gnl\|CDD\|237969	PRK15452, PRK15452, putative protease; Provisional.	2.77757e-168
NZ_CP021200.1\|WP_014840105.1\|230825_232718_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|187887	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein, distant homologs of Cas8 proteins; signature gene for I-C subtype; also known as Csd1 family.	6.48856e-112
NZ_CP021200.1\|WP_014840093.1\|212885_214226_+\|esterase-like-activity-of-phytase-family-protein	gnl\|CDD\|226675	COG4222, COG4222, Uncharacterized protein conserved in bacteria [Function unknown].	2.96194e-117
NZ_CP021200.1\|WP_014840094.1\|214294_214780_-\|RNA-polymerase-binding-protein-DksA	gnl\|CDD\|274124	TIGR02420, RNA_polymerase-binding_transcription_factor_DksA, RNA polymerase-binding protein DksA. The model that is the basis for this family describes a small, pleiotropic protein, DksA (DnaK suppressor A), originally named as a multicopy suppressor of temperature sensitivity of dnaKJ mutants. DksA mutants are defective in quorum sensing, virulence, etc. DksA is now understood to bind RNA polymerase directly and modulate its response to small molecules to control the level of transcription of rRNA. Nearly all members of this family are in the Proteobacteria. Whether the closest homologs outside the Proteobacteria function equivalently is unknown. The low value set for the noise cutoff allows identification of possible DksA proteins from outside the proteobacteria. TIGR02419 describes a closely related family of short sequences usually found in prophage regions of proteobacterial genomes or in known phage. [Transcription, Transcription factors, Regulatory functions, Small molecule interactions].	2.17852e-43
NZ_CP021200.1\|WP_014840095.1\|216217_217288_+\|uroporphyrinogen-decarboxylase	gnl\|CDD\|234644	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated.	0
NZ_CP021200.1\|WP_013522002.1\|240026_240944_+\|oligopeptide-ABC-transporter-permease-OppC	gnl\|CDD\|185304	PRK15406, PRK15406, oligopeptide ABC transporter permease OppC; Provisional.	0
NZ_CP021200.1\|WP_014840101.1\|228052_228346_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.00754e-26
NZ_CP021200.1\|WP_044953912.1\|228348_229362_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	6.93046e-178

>NZ_CP021200.1|WP_044953910.1|222868_225259_-|CRISPR-associated-helicase/endonuclease-Cas3
MFIAHTRTLDSVTQPLDAHLMNVGSLSEKFAQKLNLGEIGALLGLLHDLGKFSDNFQNYIKYNSFNSDKDDAEINNNIHISRVDHSTCGAQWIKDHFLNSNNNVLLGQILSICIASHHGKGLIDVINNNEKTWFNRLKKSRLETNFQSALSNAVNSNSIALKKAVELKESSFDTFNKHISSLYNSNNLSYIEKKFYLGCLTKFLFSCLIDADRIDSADFESNTSTSDRNIFRNYEWDIALKTLENHLKNFSSESDIQKIRESISNKAFECGSKPKNILKFTVPTGGGKTLSSLRFALKHCLEHKLDRIIYVIPFTSIIDQNAQVVRKVLGDEWVHEHHSNIEPEEVTWKNKLISSNWDKPIIFTTMVQFLDSWFSIGTRGVRHIHPMTNSVIIFDEIQSLPLKCTYLFCNVINWLNLYGNSSIVLSTATQPPLELLEPKENGALKFDNDSEIIGNLNEVDELYDNLSRVNIHFDSVKKDIDKTFSFVKEISNSENKILFIANTKKTVLDLFNKFKENNYSLENIYALTTYQCPSHRKAIINELKEKLRNNEKTVCISTQLIEAGVDISFQTVIRVLAGLDSIAQAAGRCNRNKEQDKGNLYIIDVLENLDKLPEISNAKVSVQAVLHEFNNDLHKILKPDAINKYFKQYYELQRNELIYPIESEQTSMLDLLSANSDCIYRKALDDRLLKQSFRIAAENFKSIDAPTKSVICPYEKGVNLIAILCGEWDPKKFRETLIEAQQFSVALYPSTWKMLLDEGAIHPINDTGIYYLDEKYYDSKLGLNFEGNAQMGEFYI
>NZ_CP021200.1|WP_014840099.1|221219_222866_+|U32-family-peptidase
MKKPELLLPAGGLERMRTAFFFGADAVYAGQPRYSLRARNNEFVRFEKMEQAINEAHALGKKFYVTSNLLPHNSKLRTYLDDLAPIMELKPDALIMADPGLIMKVKERWPDAVIHLSVQANTTNYWGVQFWQRMGISRIILSRELSLDEIEEIRQECPDMELEVFVHGALCIAYSGRCLLSGYFNQRDPNQGTCTNSCRWDYKVLPTVESDAGDARLAPGAERFGFGGGMSLDSGYGSGLEPGGGFGATDGTAFGRGSTGGVAGGLVAGSDSTGSVGSSESRNLTGSYSSNEFRVPYTGLEGFDFNAMREEADQQFASVGGAPRHPLAENVYLLEEGNRKGQYMPIMEDEHGTYIMNSKDLRAIEQVERLVKIGVDSLKVEGRTKSMYYVGRVANAYRRAIDDAVAGRPFNPELLADLQNIANRGYTPGFLERHQTQDYQNYLHGYSVSRLSQFAGVVLDVDDDGWATVEVKNRFRVGDKIEIIHPSGNAVVVLEAMEIDGEPTDLAPGNGREARIPNMHGKKGALLARLLSEGERERLVKLTGVSGE
>NZ_CP021200.1|WP_014840098.1|220414_220927_+|ATP-binding-protein
MQEGALPELFNLSSHEMKHNYVSSLKDTILLRDIVARYKVKDIKLLEDLFVYLVNTASSLVSITNIVNFFATKKRKTNYETLSSYINYFDNAFLIHRAECYSIKGKDTISGNCKYYLNDLSYRNYLYVAYDYVVGHLLENAVYLSLRRAGFRVYVGSIKDKEINFVCMRS
>NZ_CP021200.1|WP_014840097.1|219566_220292_+|fumarylacetoacetate-hydrolase-family-protein
MSEIKTVLPLPKPATIAIYGRKERFPVGRIFCIGRNYQEHATEMSYGAVDKSQTDPIFFIKSACHVAHFESGEVGKLPYTKGTQNLHHEVELVLAFGNDIADGASKEEIQDAIYGYCVGLDMTRRDFQSISKKNGFPWDGAKDFEDSVILGELTEKSSLANPWMDDVGIKLSVNDEIRQDGDTSDLIWKIDECVSYLSKFYNLRAGDLIMTGTPSGVGPVVRGDVLKGQIAGLQDLVVEYI
>NZ_CP021200.1|WP_014840096.1|217516_219559_+|primosomal-protein-N'
MAKSWARIALDVPLFSFFDYIIPSGMKVERGQRVIVDFGKKELIGVVVNILSSCEIPEDKQKPLKEVIDDLPPFSEKWLKLCEFAANYYIRPVGEVILPVIAPPLRNINSYRGKTKTSPVERLDKRKIKIDSEYSQNTAPELNDDQLAAANYIKSIKGYETVVLHGITGSGKTEVYLNVAEHILSTGKQVLFLVPEINLTPQFEQLIRHRFSALYGQDAVVTMHSGLSDGQRLKSWVRMCRQEAKILVGTRMSIFSPFENIGLIIVDEEHDASYKQQDGLRYSARDLAIWRANQLEVPVVLGSATPSLETWRNMQTGRYKLLSLKKRASSGNPPQIHILNTKKLKSINGIAQPLFNLISKKLSDGEQVMIYLNRRGFAPVLRCGSCGWVSTCPNCSVHTVMHRNIKRDLNILQCHHCGFRSHVPLCCPDCGEVDLSALGYGTQKIEEGLINHFPDAKILRIDADSTRLKGSAERLFTQATEGHVDIIIGTQMLAKGHDFKKLSLVAVLNSDLMLYNADFRSSERLFSQLLQVAGRAGRHIKDAKVVVQTEFDRHPVYDALIAQDYEQFSQSALEERKSATLPPYSYQILFTAQSKKILNALEFLEQVASIGANAKYEDVRIYDPVPLQIVRVANVERAQLLFESQSRTRLHSLVYEILPHIDNIKSSKISYHIEVDPLTI
>NZ_CP021200.1|WP_014840095.1|216217_217288_+|uroporphyrinogen-decarboxylase
MNDTFLRALLRQKCEYTPIWLMRQAGRYLPEYRATREKAGSFLGLAKSPEFACEVTLQPIDRFNLDAAILFSDILMVPDAMGLGLDFVAGEGPKFANPIRDEEDVKNLKVPDMNELRYVFDAVKLIRGQLQDRVPLIGFAGSPWTIACYMIEGCGSKEYRQIKSMMYSRPELLHSVLEICAQSTAQYLIEQVKAGAQAIMIFDSWGGVLAHGYYQEFSLKYMRSVLDTLRGFLNSNEHKGVTVPVIAFTKGGGLWLEDMVDAGFDALGLDWTVGLSDARRRVQDRVALQGNLDPMALFSDEKSVRAQARNVIDDFGPVASGGHVFNLGHGISQFTNPDIVEALVDEVHNYSKSKHL
>NZ_CP021200.1|WP_013521986.1|215150_216173_+|helix-turn-helix-domain-containing-protein
MRETLDCAVLYTDHFKAQAASLVNLTDKTKRVQFKEFNLGDLTNSNLPSYVVNDYELPHPNTLRELGPLLHRYDVVILPVNQKVLIWLRVMLSNCPDFPTPVMILCDDVHPTALPDLAKLGVVDFISFEDSTPIIMARIKSAIERYSYFRQREIISINRLMAEVDDQNREPKYTSASIREGLAARKNALKELEYTESVGSYTLYNFSDSSSSLNYEKSLIGQPSSIETRKISFVPPFSHLELDDADVKPPLRKSPKRKIITANITTVESTPSEQESIKDDDSFKDAKDKIVSAFEKEFIINALIQSKGNIAQAAKRSGKNRRSFWELMRKHEISAKQFRH
>NZ_CP021200.1|WP_014840094.1|214294_214780_-|RNA-polymerase-binding-protein-DksA
MELPIMAKAVKSPKTTNKSKSNSGSEVILTEEQIKQMSEDEYMNDLQLAFFKDRLKKLESDILNNAGVTTENLRETQFVPDPADRATIEEEHTLELRTRDRERKLLKKVQNSLQLIESKEYGWCEETGEPIGIPRLLARPTATLSLEAQERREKRQKLYND
>NZ_CP021200.1|WP_014840093.1|212885_214226_+|esterase-like-activity-of-phytase-family-protein
MKKIALLLSLAFASGAYAAEQYPATLAGHAVLPAATFIDPPADAPDYFKISARYKNDKYNRVDEAESMDGFNGPRKTGIKKPFNGQPVQGHSGIKIMKDGTFWLISDNGFGNKLNSPDAMLFLNQYKVDFESGKFEPLKTVFFKDPNKVIPFHITQEATKERYLSGMDLDPESFQPIGEHFWVGEEFGPYLLELGADGTVLSIFETEVDGKKIISPDHYSINLPGKPDGKMPMYQSSRSKGFEGMAASPDQSKLYPLLEGALYDHDKKEYENTDGKNYLRILEFDTQAKKWTGKSWKYHLEDNGNAIGDFNMIDDTYGMIIERDNSEGSADKLCPQGQKGDNCFETSAKFKRIYKVKLDPNSDVAEKIGFIDLMAIEDPNKVARKPLVDGKFTFPFFTIEDVDVLDQDHIIVGNDNNLPGSASRDPNKADDNELIKLKVTEFLQAK
>NZ_CP021200.1|WP_013521983.1|212188_212755_-|ATP-dependent-protease-subunit-HslV
MEQFHATTILCVRKGDEVAIGGDGQVTLGNVVIKGSARKIRKLYHDKVLSGFAGATADAFTLQERFEAKLEKHQGHLLRAAVELTKDWRTDRVLRRLEAMLIVADKDHTLVLTGNGDVLEPELGVAAIGSGGSYAQSAAQALLQNTDLTPEEIVKKSLEIAGDLCIYTNQNHVIQKLDIDESKNKKES
>NZ_CP021200.1|WP_014840101.1|228052_228346_-|CRISPR-associated-endonuclease-Cas2
MLVLITYDVDMKDNSGAKRMRKISNACQNFGLRVQYSVFECDIDPEKWIKLKSTLLDLYAPEKDSLRFYNLGSKWRGKVEHHGAKPSIDIFKDPLIL
>NZ_CP021200.1|WP_044953912.1|228348_229362_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MKKLTNSIYVTSQGSYLHKERDTIVLEVDKKKVAQIPIHSIGQIFCFGNVLISPFLVGFCGEKNVLLCLYTEHGRFLGRYVGKQNGNVLLRKNQYRMADNCPLPIAKNIIAAKIQSSKRVLQRFIRNHTNNSEIESTIGSLTFILNNIKNITSKQSLLGLEGDAASRYFSVFDTLILKPSNFRFNGRFKRPPTDPVNAILSFLYSVLSNDITSALQGVGLDPQVGFLHSDRSGRSSLSLDILEELRAWLVDRLVLTMINLKQIDINGFEVELSGAIRMKDDLRKKILSIYQSKKQELIIHPYINEKIPIGLIPHIQSQLLARHIRGELQEYPPFLMR
>NZ_CP021200.1|WP_014840103.1|229345_229975_-|CRISPR-associated-protein-Cas4
MVDKPYFQLSALQHYAFCKRQAYLIYVEGLWAENYLTASGDLIHSKVDSGVSDSRNNIKQVRNIQIVSHKYQMSGLIDLIEYSDMNHITIIEYKRGKPKPNEMDEVQVCAQALCLEEMLGVVLSYGYIWYDLNKARHKVCFTDELRDITISLINEVQILFDSPKAPNPVLCSSCKSCSIYDTCLPNIISLDKTKEYIDNLYDSSYEEID
>NZ_CP021200.1|WP_014840104.1|229964_230813_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MTLENKIDFALIIKVKNANPNGDPLNGNRPRVNFDGLGEISDVCLKRKIRNRILALKGNEEGFKIFVQSDDNNVDGITTLEKRAEDEEHGLGKRGFNDRNTAYENACKKWYDVRAFGQVFAIKKKAGESEGVSIGIRGPVTIQPAFSVDPVNITSTQITKSVSGSGDGKKKSSDTMGMKHRIDEAVYVSFGSISPQLAEKTGFSNDDADILKNAMLSMFEGDASSARPEGSMEILKLIWWKHDSKLGKHSSAKVHQSLEVNSDGSFNINDLSELKPEILDGR
>NZ_CP021200.1|WP_014840105.1|230825_232718_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MSWISSLVEAYDFIDQDIKSNINESKKIEPLTPILHNKQKVDLIVTIDIDGNFKSVESISSESKNNSYLIPVTPQSDSRTSGTEPHPLADNLGYVAGDLKDYFSTPKEVNKFEEKNSKYLELIGQWSKTESYKVLQAINKYVNKKSLIKDLLNNNVLAISEEQKLIYSLTEKGDVDKLFVVWSVIDSAGNSYQSWSDENLISSWIDFCSTKLDNKFCFYYGENKTYSTSYSCKISNAGDREKIISSNDSKGFTYRGRAIEAHEAATISVEASYKLHAMLRWLKERGQSFTYDNIEIISWANLNLKPIVLPTLEIEEPSNPFDDEETNSEPDWTSSYGFQASKKLKEKLAGFSNNLSDSDKISIIIFKSASPGRRSILYFREMLKDDYLRNINKWIEDLSWTFSIKGEAYEFSPSPWIIVNELYGNESTTLKTSILSNLIPIQINNLQIPWDLVSKAFHNACNPLKYDNFKRRKNISLACSIYKGYSIRNLNKEVEMSLNLTNKSRDYLYGRLLAVAQAVEDSVIKDIEPGSKRDTSAERYFQRFSTRPYTTWKVIYDSLKIYSKRYRFGNPDIIIGEIMELFDEESYKNDKALSPEFLLGYHCQLNEIYKRKGSDTHSETTVATEESTLN
>NZ_CP021200.1|WP_014840106.1|232720_233437_-|type-I-C-CRISPR-associated-protein-Cas5
MESNYLSFKVWGREALFTDPLTKLGGEKFTYQVPTYEAIKGIVKSIYWKPTFIWHIDKIRIINPIKMASKSMKPRKWNVDENSLSYYTYLTNVEYQVLAHFTWNENWVELEKDRNTEKHSSIAKRMLERGGRQDIFLGSRECQGYVEPCEFNSGNGFYDDADLTFGNMFHSYGYPEETGENKLINRFWSAEMKKGIISFPEINDPKLKLNFIREMRPTKCFGEESINNTNNLYSEKEE
>NZ_CP021200.1|WP_126476007.1|234298_237160_+|ATP-binding-protein
MSEGEIKPKDYSILSNLDSANYFNSFKKEINKIQGKNPIFALLLNFITFEELNKILKLEPSEEAYKFDNKFSLALCFDKELKLMPEEIFVTVSSYIKNKNAIPSLGEFEDYENKLKEFISSLFLTENIVNYEEVFNEDINKLFHKFKVDTDKSGFKTYPSIEGANTNLHSFFIKDLQKAKDLSTRNLDDYLIDNLDARLRQRVNLATRVESDDFDEKTLNTFLEILQPKNYPISRFPSSPKYALSLMQQVAVNLSVHDDSNTIRSVNGPPGTGKTTLLKDIFAHLVVEQAKEICSLSNKKIEGSETTKYSDTKSIGVLPKQISDRGIVVASSNNGAVKNIVDELPKIESIADEFKDAILHVDYFKDIANLRENSDNDQSEIINSKSGNNWGLFSKEGGKKANINQILSALDGVIKDLKNNPNPNSNAYEEFRKYLKEISEFIVKKQKEFEHLKKQKFFSKDILKQFHNEGIKLKNPDSIVNNAMACKTELEKVRKNIAKERETFSLKNLPQPKWYDFWSNERKELNNLKSEHNKKLEPLQKQKQELLARFNYLKQVHKIASVANKNILDFTDDYDSLHLSNPWFDAKFREMQSNLFISALKVRKQFLLENVDNLEAAHNIWKEQLYKPNSKFLNDVVITQAWNWINLTIPVISTTFASVSTMFKNLDNEVIGNLFIDEAGQALPQASVGAIFRSKKVLAVGDPAQIKPVLTLDPVILEKIREKYNAGKLDIPETYLSENSSTQTLIDRISKYGFRKNGEDDNWIGIPLWVHRRCKSPMFEISNQVSYDGNMVQGKTDDKPGIAEWYDVTGSADDKYVMEQGKFLVEKLKELEGNKDFFVISPFKNVAQKLIERLNSEGLVRRDKNGKVTNIGTVHTFQGKEAPVVFLVLGADERSKGAANWSMGSNHPNIMNVAATRAKEEFYIIGNKKLYQGLESRVVDTAIEEIEKFNNRK
>NZ_CP021200.1|WP_013522000.1|237400_239035_+|peptide-ABC-transporter-substrate-binding-protein
MNFKKSLLSIAVAGIATLGVAQAANVPAGTELAPKQELIWNNGANPASFDPHKIEGVPEGNVARQVFEGLVTSDEKGQLRPGVAVSWEHSDDFKTWTFHLRKDAKWSNGDPVTAHDFVYAWQRLVDPKTASPYASYVEFLKLKNAKDILGGKKPITDLGVEAKDDYTLVLNLDESVGFADKLSEHYVLYPVNKKVVEKFGDKWTAPENFVGNGAFKIESFTVNDKTVLTRNENYWDNKNTVLDKITLLAIENSATDVQRYRAGDEDITNSSLPVELFSKLKKELPEELKVNPTLCTYTYEFNNEKAPFNDVRVRKALSYAIDRDIITTKILQAGQKSAYGFTPPYIGGGDKLTKPEWASWDAKKRYVEAEKLLSEAGYSKSKPLNFTILYNTNDNHKKLAVAVGSMLNKNLGGAVNVKLENQEWKTYLDNRKAGKFDVARAGWCADYNEATTFLTYFLSDSSNNKAFYKSAEYDGLVNGSYSAKDDVARSEAYAKAEAVLNKDTPFAPVYYYVDPQLVKPWVQGFAYSHPAKNYYLKDVYIIKH
>NZ_CP021200.1|WP_013522001.1|239096_240017_+|oligopeptide-ABC-transporter-permease-OppB
MIKFIFRRILEAIPTLFVLITVSFFLMRLAPGSPFTSEKDYPPEVMANINAKYGLDKPLLVQYGNYLNDLAHGDFGPSFKYKDHSVNELVAKAFPVSLKLGILAFIIAKLIGITAGILAALKQNKWLDYFIMTFSMTGVVLPNFVIAPLLVLFFAIFWKLLPSGGWNGGAPLYMILPIFALTVSTIAGTARIMRGSMIEVLHSNYIRTAKAKGLPMRHIIIKHALRPALLPVISYLGPSFVAIITGSMVIESIFSIPGIGQLFVQGAINRDYSLVMSLTILVGTLTITFNAVVDILYAFIDPKLRY
>NZ_CP021200.1|WP_013522002.1|240026_240944_+|oligopeptide-ABC-transporter-permease-OppC
MITQKNKEFVQDLASNLESTEFVKGRSLWQDARRRFFRNRAALISLVILVLITCFVIFAPMLIPFDYADTDWAMMSMAPDFESKHYFGTDSSGRDLLVRVAVGGRISLMVGVAGALIAVIVGTLYGAIAGFVGGIVDSLMMRFLEILYSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDMARIVRGQTLSLKKKEFIEAAIVSGVSKRKIIWNHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLNDGAISMEVSPWLLIFPSIFIVVTLFCFNFIGDGLRDALDPKDR

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Crispr_ID: NZ_CP021200_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021200_2

982479-982587

Orphan

Consensus_repeat	Method
AGTTTTTGGGCAGGTGTTTGAGTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP021200_2

>merge|NZ_CP021200|2|982479-982587|CRISPRCasFinder
TGAAAAAAAGCAGGTGTTTGAGTTTTTGGGCAGGTGTTTGAGTTTAAAAAAAATCCAAAATCGCCCGATAACCGCATGGATACTAGTTTTTGGGCAGGTGTTTGAGTTT

>NZ_CP021200|2|2|982479-982587|CRISPRCasFinder
TGAAAAAAAGCAGGTGTTTGAGTTT	TTGGGCAGGTGTTTGAGTTTAAAAAAAATCCAAAATCGCCCGATAACCGCATGGATACT
AGTTTTTGGGCAGGTGTTTGAGTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021200.1\|WP_013522652.1\|972140_972986_-\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|227300
NZ_CP021200.1\|WP_013522665.1\|986803_987187_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021200.1\|WP_014840406.1\|991486_993271_-\|DNA-primase	unknown	unknown	gnl\|CDD\|235551
NZ_CP021200.1\|WP_014840404.1\|978372_979647_-\|Tad-domain-containing-protein	unknown	unknown	gnl\|CDD\|379164
NZ_CP021200.1\|WP_013522669.1\|993343_993556_-\|30S-ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707
NZ_CP021200.1\|WP_013522659.1\|979649_979958_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021200.1\|WP_014840403.1\|977078_977759_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021200.1\|WP_095696619.1\|983804_985280_-\|relaxase/mobilization-nuclease-domain-containing-protein	unknown	unknown	gnl\|CDD\|367497
NZ_CP021200.1\|WP_095696620.1\|985270_985645_-\|plasmid-mobilization-relaxosome-protein-MobC	unknown	unknown	unknown
NZ_CP021200.1\|WP_013522663.1\|985782_986112_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021200.1\|WP_013522657.1\|977764_978382_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021200.1\|WP_095696617.1\|980045_980723_-\|uracil-DNA-glycosylase	unknown	unknown	gnl\|CDD\|235376
NZ_CP021200.1\|WP_013522664.1\|986104_986341_-\|AlpA-family-phage-regulatory-protein	unknown	unknown	gnl\|CDD\|225848
NZ_CP021200.1\|WP_014840402.1\|974575_976102_-\|pilus-assembly-protein-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|227299
NZ_CP021200.1\|WP_095696618.1\|981053_982289_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|170049
NZ_CP021200.1\|WP_013522666.1\|988103_988718_+\|sel1-repeat-family-protein	unknown	unknown	gnl\|CDD\|276807
NZ_CP021200.1\|WP_014840401.1\|972989_974579_-\|Flp-pilus-assembly-complex-ATPase-component-TadA	unknown	unknown	gnl\|CDD\|227297
NZ_CP021200.1\|WP_013522661.1\|982608_983724_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|316042
NZ_CP021200.1\|WP_014840405.1\|988726_991435_-\|RNA-polymerase-sigma-factor-RpoD	unknown	unknown	gnl\|CDD\|235549
NZ_CP021200.1\|WP_013522655.1\|976091_977069_-\|Flp-pilus-assembly-protein-CpaB	unknown	unknown	gnl\|CDD\|274472

Protein	Function_ID	Function_description	E-value
NZ_CP021200.1\|WP_013522652.1\|972140_972986_-\|type-II-secretion-system-F-family-protein	gnl\|CDD\|227300	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion].	7.32902e-30
NZ_CP021200.1\|WP_014840405.1\|988726_991435_-\|RNA-polymerase-sigma-factor-RpoD	gnl\|CDD\|235549	PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.	0
NZ_CP021200.1\|WP_014840406.1\|991486_993271_-\|DNA-primase	gnl\|CDD\|235551	PRK05667, dnaG, DNA primase; Validated.	0
NZ_CP021200.1\|WP_014840402.1\|974575_976102_-\|pilus-assembly-protein-N-terminal-domain-containing-protein	gnl\|CDD\|227299	COG4964, CpaC, Flp pilus assembly protein, secretin CpaC [Intracellular trafficking and secretion].	3.22842e-59
NZ_CP021200.1\|WP_095696619.1\|983804_985280_-\|relaxase/mobilization-nuclease-domain-containing-protein	gnl\|CDD\|367497	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain. Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalyzing trans-esterification.	9.48724e-08
NZ_CP021200.1\|WP_013522669.1\|993343_993556_-\|30S-ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	5.95961e-18
NZ_CP021200.1\|WP_014840404.1\|978372_979647_-\|Tad-domain-containing-protein	gnl\|CDD\|379164	pfam13400, Tad, Putative Flp pilus-assembly TadE/G-like. This is an N-terminal domain on a family of putative Flp pilus-assembly proteins. The exact function is not known. The Flp-pilus biogenesis genes include the Tad genes, and some members of this family are putatively assigned as being TadG.	8.32201e-06
NZ_CP021200.1\|WP_095696617.1\|980045_980723_-\|uracil-DNA-glycosylase	gnl\|CDD\|235376	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional.	5.01631e-134
NZ_CP021200.1\|WP_013522664.1\|986104_986341_-\|AlpA-family-phage-regulatory-protein	gnl\|CDD\|225848	COG3311, AlpA, Predicted transcriptional regulator [Transcription].	8.31279e-14
NZ_CP021200.1\|WP_095696618.1\|981053_982289_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|170049	PRK09692, PRK09692, integrase; Provisional.	8.63889e-63
NZ_CP021200.1\|WP_013522655.1\|976091_977069_-\|Flp-pilus-assembly-protein-CpaB	gnl\|CDD\|274472	TIGR03177, pilus_cpaB, Flp pilus assembly protein CpaB. Members of this protein family are the CpaB protein of Flp-type pilus assembly. Similar proteins include the FlgA protein of bacterial flagellum biosynthesis.	9.96511e-43
NZ_CP021200.1\|WP_014840401.1\|972989_974579_-\|Flp-pilus-assembly-complex-ATPase-component-TadA	gnl\|CDD\|227297	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion].	4.42108e-146
NZ_CP021200.1\|WP_013522661.1\|982608_983724_-\|AAA-family-ATPase	gnl\|CDD\|316042	pfam13481, AAA_25, AAA domain. This AAA domain is found in a wide variety of presumed DNA repair proteins.	3.28496e-32
NZ_CP021200.1\|WP_013522666.1\|988103_988718_+\|sel1-repeat-family-protein	gnl\|CDD\|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	2.32529e-18

>NZ_CP021200.1|WP_095696618.1|981053_982289_+|tyrosine-type-recombinase/integrase
MKLNQKKIESELKKAKSSDKHIKLFDGYGLELHIYPYAKSASWRYNYRYNSKQKNITLGKYPFVSLKEAREKLTEAKNLLEAGIDPAEDKQKKKKINQESENSLFKHFANDWYNKKIHMWSVGHTKRTKAHLDNYIFPKLGDIPIDKLTVPIVKKLIDELLDKKIFDTTQRVLSLINMILNYCVQIGVLSINPCISLRGYIKPPKPIHMPALPEKSFVEFFKLLLTQTFRIQTKYALILQIITFTRSGSLTTIEWKDIDFENKKWVIPEHKFKGARTALIVPLSEWAISILQRLKNKDNRSDGYVFSHSLNVNEHMSGDTLSSLLRKMGYKDKATPHGFRSTATDILNEHGFNRDAIERQVGHLDQNAVRAAYHRTEYIKERIEMMNWYSKHIKKYYDLACEELGFSLESL
>NZ_CP021200.1|WP_095696617.1|980045_980723_-|uracil-DNA-glycosylase
MNINNIHPSWKSFFDSQIELAYFDSLVSKIDNARSSTTVYPPEDMVFSAFKLTPLTEIKVVILGQDPYYNEGQAHGLAFSVQHGVALPPSLKNIFTELKNSVDNFKIPSHGCLESWAKQGVMLLNDVLTVEQGKPNSHKNWGWEIFTTNAISQINFSCQNVVFLLWGSNAKTKSKLIDKSKHLILESPHPSPLSAYRGFFGCNHFTKANNYLISHGMSPILWELK
>NZ_CP021200.1|WP_013522659.1|979649_979958_-|hypothetical-protein
MHLVLQNQKKTLVRKPSLKKRLGQGMTEYIIIVALVSVAAIAVYQLFGQVIRSQTAAMAKEIAGEDGTSQSKKAQSAAKKAESQTKAKTLKSFTGNAKQAGG
>NZ_CP021200.1|WP_014840404.1|978372_979647_-|Tad-domain-containing-protein
MIKMPLGYRKGQVLVLGLALIAIVIISFLGMYRNSQIISKRTKLTHVVDSAAYAGAIVQARALNMQAYINLAQTANQIALAHLITQGSWTQWGQNMGKQVTKRNPQAELIKRFFGSKYSRAYLKGKRAQLGASSHIADLKNQFESHQKIINEVLFETSKAIHDTQLDMRSKAVFELIQSNYTKDDLKTISWNIEDIENPEISVIYNPKGKYISFIRDVSEKYKFLQKRYFLKSSFLTPIYKSCPTLRHRLIRRGETKLNKDGDWESIDTQSFHSLRLRLKVMCYYREYPMGWGYTNHDSSYIGESIPHVKDPPSNFSAMTFFKWIEEKTSGWNIFDTQENGLANSYAIKQGLKWSSGGLVPFVDIINHSASATSFRVRLKDKNVFGHQVETVSAAESYFEQYKHWDEKPNLWHPNWLARLRQWK
>NZ_CP021200.1|WP_013522657.1|977764_978382_-|hypothetical-protein
MEINTRKGQALVESFVLLIVMVMFYLAIPFVGKLINEKQSLQNDSRYMAFQYAIRTGDGAKSLYKTNYSNANSLSDEAQPGQLLAKSKILREEWGIQDKGIITASSFKTIKDKTKSKFLAEKFMLREELKILFDISNEASSKSAHDRSSSSKTAWKNANSKTQKLSSKSNALISAVDKPLKRKLPTFDSFSKWIGEIPNHHKKVW
>NZ_CP021200.1|WP_014840403.1|977078_977759_-|hypothetical-protein
MVRFKYFLLTVFLSLLSLLLLISTAHSNPVEKIDWIELEIKNSSLLYETKINGLNLEIYELSLMNSFDNLLDSCEKNHAFIHAVDSDLFIFPEDSHQSESLLITDYERFLKDKKLKLKAYLSILKPSVIVGRVPQKNYLPDQLELLFTNEMNNKQIYIYEIKGEKGLMQYLDKLAKEGWFETYKKTLPNKEISTWQKKINKSNENLFLSKIRLKNRDYLSVSRIVN
>NZ_CP021200.1|WP_013522655.1|976091_977069_-|Flp-pilus-assembly-protein-CpaB
MIRIRKSWYIAGFAIGAGILATFSANKYMKEKISQIEANHRQVMIPRIVAAGDIPEGTIIDSSILAVRDIPENWVSSDSLSPDEFERIEGKIITSPLTAGDPVLWAHTSTVSRRPFSEKVAVGRRAVTMPVDTINSVSGLIVPGDLIDLYVSFKYRNRDITAPLLQGVLVLATDKESKLTNDGSEREFSTVTLDTSPEEAAKLVAARQDGVITAFLRNPDDKKASQKGVKGDLASILGIATSGPIVRKKASVIYGDQGSKKMTEIANNSEDHTPTKEEILQQSVINIPGQEDIVSSWISENAKKKEVATPNDNEISKREEDVDEE
>NZ_CP021200.1|WP_014840402.1|974575_976102_-|pilus-assembly-protein-N-terminal-domain-containing-protein
MKSRYSRILILNFLLLHVPTIYQEAYAQTTNTPKAIKMEIGQIEVLNFQSIGRVAVGNSKLLNATTSDDKELVLFGLSEGFTTLQVWDKGGSISSYRVVIESANQNKLLKDIQRILNKIPNVKTSVIADKVIVEGDKLSDFDREKVVQLTKHYPQIIDMSSQVGWDEMLMIDVQIVELPRQFVQQLGLRWGTTAEGGVQIGATLEGSTAKKAFAYQSNLLANSVGNAGAIANPAFFGGINAFLNASINAMAVEGQAVVLAQPQLTARNGTTAEFLAGGEVPYSMVDDKGQAQTVFKPYGVSLNITPRIQRDGTVRSKINVEVSTVDTSMNLNGGPALKTRRTSTEFNTKSGEPIVISGFISRDQMQSMTKVPGIAETPILGELFKSRNFQNNETELVIIVRPYVVKPGDKTMKTKVHRTKSVLDSTFEQQPILNVPIQDEPEKYYKSEKRHIKYIKTQSKTHYLAPVEHIPLTKAFPERYIQKPSPTKLKLSRKASRTKRIKARRIRR
>NZ_CP021200.1|WP_014840401.1|972989_974579_-|Flp-pilus-assembly-complex-ATPase-component-TadA
MIELDVTYENGTKKKVILPLPIKIGKSEDNQLVIKSWRVSKLHATITLDDGATFINDNYSLLGVFVNGRKIQEQQKLKIGDELIIGPCKMKVLQVPQKKENNGNIATQNIDVLNEVRQKVPSNILRILHGELLSAMDLRKLKSSHESTTDLKARADSVLENIFETGDERFSAYPKDELKKLVINEAFGLGPLEELLEDENVSEIMVNSYKDIYVEKSGKLQKTGVSFSGESAVLSVIDRIVSPLGRRIDENSPMVDARLKDGSRVNAVIPPIALKGASINIRKFSKKILGVKALIEKGTMTSEMASFLNFAVLNKMNILISGGTGTGKTTVLNILTAAIPHTERLITIEDAAELQLQHPHTVSLESRPANAEGQGLVTIRDLLRNALRMRPDRIVVGECRGAEAFEMLSAMNTGHEGSLSTLHANSPREALNRLETMILMASMELPLSAIREHIASSVNFIVQLTRLNDGRRIISSIVEVGGVDSGIIQLQELYSYKKSSSTFIYSGLMPSAFENLRENGQPIPQTMFI
>NZ_CP021200.1|WP_013522652.1|972140_972986_-|type-II-secretion-system-F-family-protein
MDYFIFILAISLTLVFVVLFWIGSKILDRYKKTFNMSLGQSLWESFILIPSSKIWTMAAVASVCVGLFIYLLTRSWMFSIVFAVVILILPPLGAKWLIKKRQKKLIQQFPDFLLSLSNALKSGAGLQHSIKLINETSEKPISQEFALFLHQIRLGSSVEESLTVLLQRNPSMNMSQFVTLVKVSYKTGGNLANMLEVLSTNMRENNLLIKKIDALTSQSRMQSWIMTLLPIFLLMVLSVVAPNLTNYFWEHKYGYFALALIVIMEIGGFLTMKKLMKIRVI
>NZ_CP021200.1|WP_013522661.1|982608_983724_-|AAA-family-ATPase
MQKDKKSLENNQETNIDNLEIISTSDNNFNVCKTITWDLISPTRAEWLIENLIPLGEITIIAGDGGVGKSTLACYITAMITTGNAFYDCVPVKQGEVLYFSTEDDPSKILKQRFTAHEADLNKIHFLKEELIEQIKEPQKIIETLKVKKIKAVIIDPLIDLFEGDTYKNSDIANFLNSLAFIAKEANVSIIGLHHFIKDPKVKQLNQKLAGSHQFVAKARAVIAVIQEKDGKYFGLVKSNYSILDHYYEFNIDSTNVVYENIDKPFETSKLNVIGKSECYSLQNLVDKVEKPTFNAIKHMKSTLTLENWIREHGGMIEISVAKKELIGKFFKSDYSLHNAKRKSEKINHKKISDKNYWILNEQPKQIIFHQ
>NZ_CP021200.1|WP_095696619.1|983804_985280_-|relaxase/mobilization-nuclease-domain-containing-protein
MLVKFFKNRSRGSKLKGESARKKADEFKFGYSKAIYTKTNSNSIKKSYGPKSSIEYLLREKERNQYKKIKDNVNPKNDEKIKRLKQKLDNVKILRGDPIVSLKLGEYADFKFENSYTAGCLAIQEKNLDDKNKKEIMNSFEELVFTGIDYQNRNILWVEHTDKKNLELNFFIANIEPSTDKNFVPYLHKTDKRLFANWRDLINENYNLSNPLDPKKKQSLIENKRIPKDVNTIRNTVHSLVEKEVEAGKLTNREEVIKFIKRKGYKVARTTKQNISIKNPNGTRNIRLSGEYYKEEFLRQVVKEKSKGLLSFLSKESKEIENPTVANDSQKLIDTRDTKQILDEFSQWVTARHDKHRNKYSQSDIEPYDWDNSFTNLKTYDPYEKYEIKFVDSKHKEVEPELEEARIAKEKAEEEKRRRENEERIARELREAEEKRKAEEALIAKEKAEEEKRRRENEERIARELREEEEEKRRRENEEIEPETPKIDLFM
>NZ_CP021200.1|WP_095696620.1|985270_985645_-|plasmid-mobilization-relaxosome-protein-MobC
MKIFKTHLSKKTENFSSKNIKKIRDKELKIRLTYEEKEAIKKRSTRPQIAVWAREVLLNEKIYKPYVSADPKLVVALNKIGNNFNQIVKKLHSIQHFDAYSLGEFIDGIEKIYKEFLQVKEKCL
>NZ_CP021200.1|WP_013522663.1|985782_986112_-|hypothetical-protein
MNNDFFKDTSDEIIIKHQKMLSRLFMKSLVKNPEWLNWISENWKSFITKKKERELAETSLSFIKHYQSEYSQTNKKDYQKKTSDSKSKSTDKTTSQNEAVTNVYSDTIF
>NZ_CP021200.1|WP_013522664.1|986104_986341_-|AlpA-family-phage-regulatory-protein
MQSNLLTIKEVQEMLSLSQASIYLKMNPKYTAYFDETFPKPVKLGGRSNRWRKSDLEIWINKKDPNFKSLKLKEIVNE
>NZ_CP021200.1|WP_013522665.1|986803_987187_+|hypothetical-protein
MENDSFENITMRFKRLMGLTTDIEVANVLGLTQSAFSERKRRNSFPVKALKNFIENDKRNRIKDLRWVLTGSIEGYQRTYPLHIADAADRLDEMSYYHQTVIIDLINRMYTDYVELENFKKGSDLKE
>NZ_CP021200.1|WP_013522666.1|988103_988718_+|sel1-repeat-family-protein
MSKFFKKFLKVITDFAMAETNGLEAMDYNMEELCELATKGDPKAQYYLGLAYISGFYFHKDFKTGLKWLVLSANQYYVPAESKISQLFLAEAAKYPRSELAEQIANWAENAAYRSDSSAKGVWGYMLLEGIGTTKDYKQSIYFLKQAADEGITKAQYLLGKVYFEGTGVTRDLGIATHYLEMASSNKYGPAKELLEDIKKGQFN
>NZ_CP021200.1|WP_014840405.1|988726_991435_-|RNA-polymerase-sigma-factor-RpoD
MKKQDKKDALTKSTKSASTTKGSTSSKATKSVATTSVKNSSLKKPTATKTSPKTTAKSTKASMSKPATKPNTKTVASKPVATKAKPSLKTTKAETSTKKVSKSVPKSVAKTASKLTVKQTSKSSTNESTKAPASKSNISKGTSSSSAKAQDKSTKTVAPKRASSSSATKIEKSNTKAKPLSKTSIKTKSIAKKSIATESSSKVTSKTSTAKPTRNIVSNRDIDELMSIDSDDDFMPKISRRGRKPGSKNAPKTQAKSTEDFDLGDPSDEDSESLDDIDDSTSKGSKSFRSKAESKKISDEERRQLVRSLIKQGKDHGYLTYAEINDVLSDDIVDSEAMESMVSTLESMGIPVYEEAPNAEDLILAEPSNVNDDDDVDDEAEVALTTVDSEFGRTTDPVRMYMREMGSVELLNRTKEIEIAKRIEEGLKHMVMAIANSPTTINEILEHIQKVRDGKAQIEEIVDGLISDDGEEYAGSGAADADEESEEAQTGGMSSLQIEKLREESLAKFDRVQKAFDKMKAEYEKGRFQSQAYNKANQQIHDEISGVRFTAKMVEKLAEILRKQIERVRELEKAMLSVCVDKVGMPREHFIDSFPGNETNLEWVNDELKKKPKYAEKLERSIPDIHEIQQKFIDLEKEVILPIKELKDVNKRMVNGEAKAKKAKHEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARIIRIPVHMIETINKINRITRQILQETGVEPDSAMLAEKMDMPIEKIRKILKISKDPISMETPIGDDDDSHLGDFIEDTSTLSPEEAALQRSMSEVFDEVINSLTQREGKVLRMRFGIGMSSDQTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRADKLKSFLENS
>NZ_CP021200.1|WP_014840406.1|991486_993271_-|DNA-primase
MSDSFTNELLSRTNIVDIIGGYLTLRKSGASYIGLCPFHNEKRPSFSVNSAKQIYKCFSCGESGNVITFLMKYNGMTFPEACKYLADKLGLEMPKRHRLTEREQQELKNKKSRQELMCDCLLQAQEYYVFNLQDSKEAKTYIAKRELNEDSIKKFSLGWSGSEYKNLAHKFPDYDDKLLMDVGLVLQNEELRKRDRFRNRLMFPILNENGKTIGFGGRTLNNDQPKYLNSPETEVFHKGKELYGLFENKKGIIKEKKALVVEGYMDVIALSQHGFDYAVATLGTATSQTHIQKLYRYTSTIIFCFDGDTAGREAAWKALNECLPILKEGHSIRFLFLPPEHDPDSYVRAYGGTQFKNQIKSSKPLSIYLLDELKTRFNLNEAEGRAGCYSFVKPLIATIPKSAIKTQMEKEVSKLLNLTHEEFLADLGLSDTDFKKADRSYKKTKIKKSTRTSKVSVEPLEYKFIKLLAMYPYLTQKLSARHIEILKKFPKYRLVHEFINLIYKHQISVYSQLLNQVDIDVDLLQILDSIESSPLNLDEVESPEEVLKDTLQRVELDFIQTEMSEIAQREDLEHSQKESMLQRLNRRYIALRNH
>NZ_CP021200.1|WP_013522669.1|993343_993556_-|30S-ribosomal-protein-S21
MPSVRLKENEQFESALRRFKRTIEKTGLLTDLRAREFYEKPTTERKRKHAAAVKRHHKRIRSQQLPPRLY

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Crispr_ID: NZ_CP021200_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021200_3

987248-987336

Orphan

Consensus_repeat	Method
AAACTCAAACACCTGCCCAAAAACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP021200_3

>merge|NZ_CP021200|3|987248-987336|CRISPRCasFinder
AAACTCAAACACCTGCCCAAAAACTAGTATCCATGCGGTTATCTGGCGATTTTGGATTTTTTTTAAACTCAAACACCTGCCCAAAAACT

>NZ_CP021200|3|3|987248-987336|CRISPRCasFinder
AAACTCAAACACCTGCCCAAAAACT	AGTATCCATGCGGTTATCTGGCGATTTTGGATTTTTTTT
AAACTCAAACACCTGCCCAAAAACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021200.1\|WP_044953967.1\|994280_995573_-\|adenylosuccinate-synthase	unknown	unknown	gnl\|CDD\|234904
NZ_CP021200.1\|WP_013522674.1\|997799_998867_-\|GTPase-HflX	unknown	unknown	gnl\|CDD\|274455
NZ_CP021200.1\|WP_095696619.1\|983804_985280_-\|relaxase/mobilization-nuclease-domain-containing-protein	unknown	unknown	gnl\|CDD\|367497
NZ_CP021200.1\|WP_013522665.1\|986803_987187_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021200.1\|WP_014840406.1\|991486_993271_-\|DNA-primase	unknown	unknown	gnl\|CDD\|235551
NZ_CP021200.1\|WP_013522669.1\|993343_993556_-\|30S-ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707
NZ_CP021200.1\|WP_013522673.1\|996470_997787_-\|FtsH-protease-activity-modulator-HflK	unknown	unknown	gnl\|CDD\|259802
NZ_CP021200.1\|WP_013522659.1\|979649_979958_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021200.1\|WP_095696620.1\|985270_985645_-\|plasmid-mobilization-relaxosome-protein-MobC	unknown	unknown	unknown
NZ_CP021200.1\|WP_013522663.1\|985782_986112_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021200.1\|WP_013522675.1\|998915_999191_-\|RNA-chaperone-Hfq	unknown	unknown	gnl\|CDD\|179001
NZ_CP021200.1\|WP_013522672.1\|995579_996461_-\|protease-modulator-HflC	unknown	unknown	gnl\|CDD\|259803
NZ_CP021200.1\|WP_095696617.1\|980045_980723_-\|uracil-DNA-glycosylase	unknown	unknown	gnl\|CDD\|235376
NZ_CP021200.1\|WP_013522664.1\|986104_986341_-\|AlpA-family-phage-regulatory-protein	unknown	unknown	gnl\|CDD\|225848
NZ_CP021200.1\|WP_013522670.1\|993725_994277_-\|nicotinate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|225145
NZ_CP021200.1\|WP_095696618.1\|981053_982289_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|170049
NZ_CP021200.1\|WP_014840405.1\|988726_991435_-\|RNA-polymerase-sigma-factor-RpoD	unknown	unknown	gnl\|CDD\|235549
NZ_CP021200.1\|WP_014840404.1\|978372_979647_-\|Tad-domain-containing-protein	unknown	unknown	gnl\|CDD\|379164
NZ_CP021200.1\|WP_013522661.1\|982608_983724_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|316042
NZ_CP021200.1\|WP_013522666.1\|988103_988718_+\|sel1-repeat-family-protein	unknown	unknown	gnl\|CDD\|276807

Protein	Function_ID	Function_description	E-value
NZ_CP021200.1\|WP_044953967.1\|994280_995573_-\|adenylosuccinate-synthase	gnl\|CDD\|234904	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional.	0
NZ_CP021200.1\|WP_095696619.1\|983804_985280_-\|relaxase/mobilization-nuclease-domain-containing-protein	gnl\|CDD\|367497	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain. Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalyzing trans-esterification.	9.48724e-08
NZ_CP021200.1\|WP_013522664.1\|986104_986341_-\|AlpA-family-phage-regulatory-protein	gnl\|CDD\|225848	COG3311, AlpA, Predicted transcriptional regulator [Transcription].	8.31279e-14
NZ_CP021200.1\|WP_014840404.1\|978372_979647_-\|Tad-domain-containing-protein	gnl\|CDD\|379164	pfam13400, Tad, Putative Flp pilus-assembly TadE/G-like. This is an N-terminal domain on a family of putative Flp pilus-assembly proteins. The exact function is not known. The Flp-pilus biogenesis genes include the Tad genes, and some members of this family are putatively assigned as being TadG.	8.32201e-06
NZ_CP021200.1\|WP_013522673.1\|996470_997787_-\|FtsH-protease-activity-modulator-HflK	gnl\|CDD\|259802	cd03404, SPFH_HflK, High frequency of lysogenization K (HflK) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model characterizes proteins similar to prokaryotic HflK (High frequency of lysogenization K). Although many members of the SPFH (or band 7) superfamily are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this SPFH domain superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another SPFH superfamily member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection.	1.23801e-125
NZ_CP021200.1\|WP_013522674.1\|997799_998867_-\|GTPase-HflX	gnl\|CDD\|274455	TIGR03156, GTP_HflX, GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). [Unknown function, General].	0
NZ_CP021200.1\|WP_013522675.1\|998915_999191_-\|RNA-chaperone-Hfq	gnl\|CDD\|179001	PRK00395, hfq, RNA-binding protein Hfq; Provisional.	4.25278e-45
NZ_CP021200.1\|WP_013522672.1\|995579_996461_-\|protease-modulator-HflC	gnl\|CDD\|259803	cd03405, SPFH_HflC, High frequency of lysogenization C (HflC) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model characterizes proteins similar to prokaryotic HflC (High frequency of lysogenization C). Although many members of the SPFH (or band 7) superfamily are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this SPFH domain superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another SPFH superfamily member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection.	1.3608e-115
NZ_CP021200.1\|WP_095696617.1\|980045_980723_-\|uracil-DNA-glycosylase	gnl\|CDD\|235376	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional.	5.01631e-134
NZ_CP021200.1\|WP_014840406.1\|991486_993271_-\|DNA-primase	gnl\|CDD\|235551	PRK05667, dnaG, DNA primase; Validated.	0
NZ_CP021200.1\|WP_013522670.1\|993725_994277_-\|nicotinate-phosphoribosyltransferase	gnl\|CDD\|225145	COG2236, COG2236, Predicted phosphoribosyltransferases [General function prediction only].	2.99336e-29
NZ_CP021200.1\|WP_095696618.1\|981053_982289_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|170049	PRK09692, PRK09692, integrase; Provisional.	8.63889e-63
NZ_CP021200.1\|WP_014840405.1\|988726_991435_-\|RNA-polymerase-sigma-factor-RpoD	gnl\|CDD\|235549	PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.	0
NZ_CP021200.1\|WP_013522669.1\|993343_993556_-\|30S-ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	5.95961e-18
NZ_CP021200.1\|WP_013522661.1\|982608_983724_-\|AAA-family-ATPase	gnl\|CDD\|316042	pfam13481, AAA_25, AAA domain. This AAA domain is found in a wide variety of presumed DNA repair proteins.	3.28496e-32
NZ_CP021200.1\|WP_013522666.1\|988103_988718_+\|sel1-repeat-family-protein	gnl\|CDD\|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	2.32529e-18

>NZ_CP021200.1|WP_013522665.1|986803_987187_+|hypothetical-protein
MENDSFENITMRFKRLMGLTTDIEVANVLGLTQSAFSERKRRNSFPVKALKNFIENDKRNRIKDLRWVLTGSIEGYQRTYPLHIADAADRLDEMSYYHQTVIIDLINRMYTDYVELENFKKGSDLKE
>NZ_CP021200.1|WP_013522664.1|986104_986341_-|AlpA-family-phage-regulatory-protein
MQSNLLTIKEVQEMLSLSQASIYLKMNPKYTAYFDETFPKPVKLGGRSNRWRKSDLEIWINKKDPNFKSLKLKEIVNE
>NZ_CP021200.1|WP_013522663.1|985782_986112_-|hypothetical-protein
MNNDFFKDTSDEIIIKHQKMLSRLFMKSLVKNPEWLNWISENWKSFITKKKERELAETSLSFIKHYQSEYSQTNKKDYQKKTSDSKSKSTDKTTSQNEAVTNVYSDTIF
>NZ_CP021200.1|WP_095696620.1|985270_985645_-|plasmid-mobilization-relaxosome-protein-MobC
MKIFKTHLSKKTENFSSKNIKKIRDKELKIRLTYEEKEAIKKRSTRPQIAVWAREVLLNEKIYKPYVSADPKLVVALNKIGNNFNQIVKKLHSIQHFDAYSLGEFIDGIEKIYKEFLQVKEKCL
>NZ_CP021200.1|WP_095696619.1|983804_985280_-|relaxase/mobilization-nuclease-domain-containing-protein
MLVKFFKNRSRGSKLKGESARKKADEFKFGYSKAIYTKTNSNSIKKSYGPKSSIEYLLREKERNQYKKIKDNVNPKNDEKIKRLKQKLDNVKILRGDPIVSLKLGEYADFKFENSYTAGCLAIQEKNLDDKNKKEIMNSFEELVFTGIDYQNRNILWVEHTDKKNLELNFFIANIEPSTDKNFVPYLHKTDKRLFANWRDLINENYNLSNPLDPKKKQSLIENKRIPKDVNTIRNTVHSLVEKEVEAGKLTNREEVIKFIKRKGYKVARTTKQNISIKNPNGTRNIRLSGEYYKEEFLRQVVKEKSKGLLSFLSKESKEIENPTVANDSQKLIDTRDTKQILDEFSQWVTARHDKHRNKYSQSDIEPYDWDNSFTNLKTYDPYEKYEIKFVDSKHKEVEPELEEARIAKEKAEEEKRRRENEERIARELREAEEKRKAEEALIAKEKAEEEKRRRENEERIARELREEEEEKRRRENEEIEPETPKIDLFM
>NZ_CP021200.1|WP_013522661.1|982608_983724_-|AAA-family-ATPase
MQKDKKSLENNQETNIDNLEIISTSDNNFNVCKTITWDLISPTRAEWLIENLIPLGEITIIAGDGGVGKSTLACYITAMITTGNAFYDCVPVKQGEVLYFSTEDDPSKILKQRFTAHEADLNKIHFLKEELIEQIKEPQKIIETLKVKKIKAVIIDPLIDLFEGDTYKNSDIANFLNSLAFIAKEANVSIIGLHHFIKDPKVKQLNQKLAGSHQFVAKARAVIAVIQEKDGKYFGLVKSNYSILDHYYEFNIDSTNVVYENIDKPFETSKLNVIGKSECYSLQNLVDKVEKPTFNAIKHMKSTLTLENWIREHGGMIEISVAKKELIGKFFKSDYSLHNAKRKSEKINHKKISDKNYWILNEQPKQIIFHQ
>NZ_CP021200.1|WP_095696618.1|981053_982289_+|tyrosine-type-recombinase/integrase
MKLNQKKIESELKKAKSSDKHIKLFDGYGLELHIYPYAKSASWRYNYRYNSKQKNITLGKYPFVSLKEAREKLTEAKNLLEAGIDPAEDKQKKKKINQESENSLFKHFANDWYNKKIHMWSVGHTKRTKAHLDNYIFPKLGDIPIDKLTVPIVKKLIDELLDKKIFDTTQRVLSLINMILNYCVQIGVLSINPCISLRGYIKPPKPIHMPALPEKSFVEFFKLLLTQTFRIQTKYALILQIITFTRSGSLTTIEWKDIDFENKKWVIPEHKFKGARTALIVPLSEWAISILQRLKNKDNRSDGYVFSHSLNVNEHMSGDTLSSLLRKMGYKDKATPHGFRSTATDILNEHGFNRDAIERQVGHLDQNAVRAAYHRTEYIKERIEMMNWYSKHIKKYYDLACEELGFSLESL
>NZ_CP021200.1|WP_095696617.1|980045_980723_-|uracil-DNA-glycosylase
MNINNIHPSWKSFFDSQIELAYFDSLVSKIDNARSSTTVYPPEDMVFSAFKLTPLTEIKVVILGQDPYYNEGQAHGLAFSVQHGVALPPSLKNIFTELKNSVDNFKIPSHGCLESWAKQGVMLLNDVLTVEQGKPNSHKNWGWEIFTTNAISQINFSCQNVVFLLWGSNAKTKSKLIDKSKHLILESPHPSPLSAYRGFFGCNHFTKANNYLISHGMSPILWELK
>NZ_CP021200.1|WP_013522659.1|979649_979958_-|hypothetical-protein
MHLVLQNQKKTLVRKPSLKKRLGQGMTEYIIIVALVSVAAIAVYQLFGQVIRSQTAAMAKEIAGEDGTSQSKKAQSAAKKAESQTKAKTLKSFTGNAKQAGG
>NZ_CP021200.1|WP_014840404.1|978372_979647_-|Tad-domain-containing-protein
MIKMPLGYRKGQVLVLGLALIAIVIISFLGMYRNSQIISKRTKLTHVVDSAAYAGAIVQARALNMQAYINLAQTANQIALAHLITQGSWTQWGQNMGKQVTKRNPQAELIKRFFGSKYSRAYLKGKRAQLGASSHIADLKNQFESHQKIINEVLFETSKAIHDTQLDMRSKAVFELIQSNYTKDDLKTISWNIEDIENPEISVIYNPKGKYISFIRDVSEKYKFLQKRYFLKSSFLTPIYKSCPTLRHRLIRRGETKLNKDGDWESIDTQSFHSLRLRLKVMCYYREYPMGWGYTNHDSSYIGESIPHVKDPPSNFSAMTFFKWIEEKTSGWNIFDTQENGLANSYAIKQGLKWSSGGLVPFVDIINHSASATSFRVRLKDKNVFGHQVETVSAAESYFEQYKHWDEKPNLWHPNWLARLRQWK
>NZ_CP021200.1|WP_013522666.1|988103_988718_+|sel1-repeat-family-protein
MSKFFKKFLKVITDFAMAETNGLEAMDYNMEELCELATKGDPKAQYYLGLAYISGFYFHKDFKTGLKWLVLSANQYYVPAESKISQLFLAEAAKYPRSELAEQIANWAENAAYRSDSSAKGVWGYMLLEGIGTTKDYKQSIYFLKQAADEGITKAQYLLGKVYFEGTGVTRDLGIATHYLEMASSNKYGPAKELLEDIKKGQFN
>NZ_CP021200.1|WP_014840405.1|988726_991435_-|RNA-polymerase-sigma-factor-RpoD
MKKQDKKDALTKSTKSASTTKGSTSSKATKSVATTSVKNSSLKKPTATKTSPKTTAKSTKASMSKPATKPNTKTVASKPVATKAKPSLKTTKAETSTKKVSKSVPKSVAKTASKLTVKQTSKSSTNESTKAPASKSNISKGTSSSSAKAQDKSTKTVAPKRASSSSATKIEKSNTKAKPLSKTSIKTKSIAKKSIATESSSKVTSKTSTAKPTRNIVSNRDIDELMSIDSDDDFMPKISRRGRKPGSKNAPKTQAKSTEDFDLGDPSDEDSESLDDIDDSTSKGSKSFRSKAESKKISDEERRQLVRSLIKQGKDHGYLTYAEINDVLSDDIVDSEAMESMVSTLESMGIPVYEEAPNAEDLILAEPSNVNDDDDVDDEAEVALTTVDSEFGRTTDPVRMYMREMGSVELLNRTKEIEIAKRIEEGLKHMVMAIANSPTTINEILEHIQKVRDGKAQIEEIVDGLISDDGEEYAGSGAADADEESEEAQTGGMSSLQIEKLREESLAKFDRVQKAFDKMKAEYEKGRFQSQAYNKANQQIHDEISGVRFTAKMVEKLAEILRKQIERVRELEKAMLSVCVDKVGMPREHFIDSFPGNETNLEWVNDELKKKPKYAEKLERSIPDIHEIQQKFIDLEKEVILPIKELKDVNKRMVNGEAKAKKAKHEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARIIRIPVHMIETINKINRITRQILQETGVEPDSAMLAEKMDMPIEKIRKILKISKDPISMETPIGDDDDSHLGDFIEDTSTLSPEEAALQRSMSEVFDEVINSLTQREGKVLRMRFGIGMSSDQTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRADKLKSFLENS
>NZ_CP021200.1|WP_014840406.1|991486_993271_-|DNA-primase
MSDSFTNELLSRTNIVDIIGGYLTLRKSGASYIGLCPFHNEKRPSFSVNSAKQIYKCFSCGESGNVITFLMKYNGMTFPEACKYLADKLGLEMPKRHRLTEREQQELKNKKSRQELMCDCLLQAQEYYVFNLQDSKEAKTYIAKRELNEDSIKKFSLGWSGSEYKNLAHKFPDYDDKLLMDVGLVLQNEELRKRDRFRNRLMFPILNENGKTIGFGGRTLNNDQPKYLNSPETEVFHKGKELYGLFENKKGIIKEKKALVVEGYMDVIALSQHGFDYAVATLGTATSQTHIQKLYRYTSTIIFCFDGDTAGREAAWKALNECLPILKEGHSIRFLFLPPEHDPDSYVRAYGGTQFKNQIKSSKPLSIYLLDELKTRFNLNEAEGRAGCYSFVKPLIATIPKSAIKTQMEKEVSKLLNLTHEEFLADLGLSDTDFKKADRSYKKTKIKKSTRTSKVSVEPLEYKFIKLLAMYPYLTQKLSARHIEILKKFPKYRLVHEFINLIYKHQISVYSQLLNQVDIDVDLLQILDSIESSPLNLDEVESPEEVLKDTLQRVELDFIQTEMSEIAQREDLEHSQKESMLQRLNRRYIALRNH
>NZ_CP021200.1|WP_013522669.1|993343_993556_-|30S-ribosomal-protein-S21
MPSVRLKENEQFESALRRFKRTIEKTGLLTDLRAREFYEKPTTERKRKHAAAVKRHHKRIRSQQLPPRLY
>NZ_CP021200.1|WP_013522670.1|993725_994277_-|nicotinate-phosphoribosyltransferase
MTSNFPQSTESDLWVSWDEYNHLIERLAFEVYKSGWAFDQIICLARGGVRVGDVLSRIFDVPLGILATSSYREVAGTVQGQLDIAKFITITKGTLEGRVLLVDDMVDTGLTFSKVQDHLKSEFPQIKEMKSAVLWWKGHSTITPDFYIEKLPTNPWIHQPFEEYDSIRPHQLEAWIRKGHPEK
>NZ_CP021200.1|WP_044953967.1|994280_995573_-|adenylosuccinate-synthase
MMKNVVVIGTQWGDEGKGKIVDWLSESVYGVVRFQGGHNAGHTLWINGKKTILRLIPSGIMHPNTQCFIGNGVVLSPEAILGEISELEVAGVEVRSRLHISEAATLVLPYHIAIDQVREAARGDNKIGTTGRGIGPAYEDKVARRAIRVQDLYDLEVLETKLRSVLSYHNFILKERYKASEIEFEPLFAKLKDWGDELKPMVDDVSLDLYNHLNEGKNFLFEGAQGSLLDIDHGTYPFVTSSNCAAGTASAGAGIGPHHLNYILGITKAYTTRVGSGPFPTELIGELGDHIAKVGQEFGSVTGRPRRCGWFDAVALKRSAIFNGISGLCVTKLDVLDGLSEVGICVGYELDGKVIDVLPYGASKVSKVKPVLEMMPGWNESTKGVTEYDNLPQNAKKYLKRMEEVSGVDIALISTGPDRKETIMLKNPLE
>NZ_CP021200.1|WP_013522672.1|995579_996461_-|protease-modulator-HflC
MNRSILGIIFLGILAWFISSTLFIVGERDYALVFKLGEWQRTISQPGLHFKWPSPFQNVIYLDKRVQTIESGDTERIQTSEKKNLIIDSYIKWRINDPLRFYISFGPSAENAQSRLGAQIRDALNASVNTRTVRAVISQERDVVMAEILKNVEERAKPLGIQVVDVRLKRIEFSQEVSDSVYNRMQAERKEEANSLRANGFAESEKIRANADRQVKEILAQAQAEAENTKGSGDAKATEIYASAYGKNPEFYSFYNSLNAYKNIFSQDKDVMVIDPSSDFFKYLKQSSQENSN
>NZ_CP021200.1|WP_013522673.1|996470_997787_-|FtsH-protease-activity-modulator-HflK
MKDNLIANLNDPDWGKGQSSENPKENPKQPRSDAPPELDQVFGDLANKLKGMFDKDSKRRGNFGRVPPGGPKKPTSKILSKFGFFVIIIGLLIAWLISGFYIVKEGQVGVVTQFGKYSRTVAPGFQWHIPTPIENVEIVDISRVRSFSVGYRDNARNKVLPEALMLTEDENIVDVQFDVQYRLKADMQGTNGKNSPAANYLFETRAPDESVRQAAETAMREIVGKQSMNKILYESRTQAAIDVRKLMQQILDRYKTGIEVITVAIQNVQPPEQVQAAFEDAIKAGQDYERQKNEGYAYASKVIPEARGRASRIQQEAEGYKAVVIQKATGEAERFKKIETEFTNSPEITRERMYLSSMEELLKNTPKILVDSKNNSPLLYLPIDKLSASTRTNFNRVSEGYIPEIEQKDNSTSVEDEANKIIDKQDIRSRALNRNRVR
>NZ_CP021200.1|WP_013522674.1|997799_998867_-|GTPase-HflX
MKAIVISVNFNDSNFDSHLSEFQMLATGAGAQILETVVAKRDKPDAKFFIGSGKVEEVVGLISIYKPEIILFDQALSPAQQRNLERAFGLRVIDRVTLILDIFALRAKSHEGKLQVELAQLQHLITRLTRLWTHLERQRGGIGMRGPGESQLEMDRRMIGDKVKQLKERLAKLDTQRLTQRRARARSNMLSVSLVGYTNAGKSTLFNALTRAGTYEADQLFATLDTTTRRIWIEDVGQVTISDTVGFIRDLPTTLIAAFKATLEETVHADLLFHVVDAANPQRDEQILEVNKVLKEINAEDIPTILVYNKIDLLEQGARIETDEQGKINRIFVSSKTREGMNLLRKAIAEFKSNI
>NZ_CP021200.1|WP_013522675.1|998915_999191_-|RNA-chaperone-Hfq
MSFKGQTLQDPFLNALRKEHIPVSIYLVNGIKLQGQVESFDQYVILLRNTVTQMVYKHAISTVVPARAVPFPNEITEFTEVVENSESEEPI

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Crispr_ID: NZ_CP021200_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021200_4

1224347-1224619

Orphan

Consensus_repeat	Method
GTGGCAGAACGGGTGGATTTGAGTCAAGACTTAGTAGAG	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP021200_4

>merge|NZ_CP021200|4|1224347-1224619|CRISPRCasFinder
GTAGCTAGACGCAAGGATTTATCACAAGACTTAGTAGATAAATTGGCTAATGATGAAGATTGGAGTGTAAGGTGGGAAGTGGCAGAACGGGTGGATTTGAGTCAAGACTTAGTAGAGAAATTGGCTAATGATGAACATGAGGATGTAAGAGCTTCGGTGGCAGAACGGGTGGATTTGAGTCAAGACTTAGTAGAGCAGTTGTCTTGCGATAAAAGTAGTAAAGTAAGGCTTGCGGTGGCGGTAAGAAAGGATTTATCCCAAGATTTGGTAGAG

>NZ_CP021200|4|4|1224347-1224619|CRISPRCasFinder
GTAGCTAGACGCAAGGATTTATCACAAGACTTAGTAGAT	AAATTGGCTAATGATGAAGATTGGAGTGTAAGGTGGGAA
GTGGCAGAACGGGTGGATTTGAGTCAAGACTTAGTAGAG	AAATTGGCTAATGATGAACATGAGGATGTAAGAGCTTCG
GTGGCAGAACGGGTGGATTTGAGTCAAGACTTAGTAGAG	CAGTTGTCTTGCGATAAAAGTAGTAAAGTAAGGCTTGCG
GTGGCGGTAAGAAAGGATTTATCCCAAGATTTGGTAGAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021200.1\|WP_126476011.1\|1222442_1222751_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021200.1\|WP_014840498.1\|1230989_1231160_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021200.1\|WP_013521316.1\|1222762_1223365_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021200.1\|WP_014840490.1\|1217486_1217912_+\|VirB3-family-type-IV-secretion-system-protein	unknown	unknown	gnl\|CDD\|368285
NZ_CP021200.1\|WP_013521323.1\|1227516_1227897_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021200.1\|WP_014840491.1\|1220245_1220956_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021200.1\|WP_013521313.1\|1220946_1221564_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021200.1\|WP_013521326.1\|1229682_1230213_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021200.1\|WP_013521309.1\|1216348_1217080_+\|lytic-transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|381613
NZ_CP021200.1\|WP_013521327.1\|1230264_1230852_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021200.1\|WP_013521314.1\|1221607_1222405_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370815
NZ_CP021200.1\|WP_013521321.1\|1226274_1227204_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021200.1\|WP_100248699.1\|1223718_1224192_+\|DUF2336-domain-containing-protein	unknown	unknown	gnl\|CDD\|370815
NZ_CP021200.1\|WP_013521310.1\|1217190_1217487_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235124
NZ_CP021200.1\|WP_013521325.1\|1228521_1229646_+\|type-IV-secretion-system-protein	unknown	unknown	gnl\|CDD\|377390
NZ_CP021200.1\|WP_013521322.1\|1227246_1227486_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|250888
NZ_CP021200.1\|WP_013521319.1\|1224828_1225488_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021200.1\|WP_013521311.1\|1217811_1220217_+\|conjugal-transfer-protein	unknown	unknown	gnl\|CDD\|273346
NZ_CP021200.1\|WP_013521320.1\|1225573_1226278_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021200.1\|WP_013521324.1\|1227883_1228513_+\|type-VI-secretion-protein	unknown	unknown	gnl\|CDD\|271354

Protein	Function_ID	Function_description	E-value
NZ_CP021200.1\|WP_013521314.1\|1221607_1222405_+\|hypothetical-protein	gnl\|CDD\|370815	pfam10098, DUF2336, Uncharacterized protein conserved in bacteria (DUF2336). Members of this family of hypothetical bacterial proteins have no known function.	0.000974755
NZ_CP021200.1\|WP_100248699.1\|1223718_1224192_+\|DUF2336-domain-containing-protein	gnl\|CDD\|370815	pfam10098, DUF2336, Uncharacterized protein conserved in bacteria (DUF2336). Members of this family of hypothetical bacterial proteins have no known function.	1.37755e-05
NZ_CP021200.1\|WP_014840490.1\|1217486_1217912_+\|VirB3-family-type-IV-secretion-system-protein	gnl\|CDD\|368285	pfam05101, VirB3, Type IV secretory pathway, VirB3-like protein. This family includes the Type IV secretory pathway VirB3 protein, that is found associated with bacterial inner and outer membranes. The family also includes the conjugal transfer protein TrbD family that contains a nucleotide binding motif and may provide energy for the export of DNA or the export of other Trb proteins.	9.55005e-11
NZ_CP021200.1\|WP_013521310.1\|1217190_1217487_+\|hypothetical-protein	gnl\|CDD\|235124	PRK03427, PRK03427, cell division protein ZipA; Provisional.	0.000894405
NZ_CP021200.1\|WP_013521322.1\|1227246_1227486_+\|hypothetical-protein	gnl\|CDD\|250888	pfam01816, LRV, Leucine rich repeat variant. The function of this repeat is unknown. It has an unusual structure of two helices. One is an alpha helix, the other is the much rarer 3-10 helix.	0.00250491
NZ_CP021200.1\|WP_013521311.1\|1217811_1220217_+\|conjugal-transfer-protein	gnl\|CDD\|273346	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).	1.33054e-144
NZ_CP021200.1\|WP_013521325.1\|1228521_1229646_+\|type-IV-secretion-system-protein	gnl\|CDD\|377390	pfam04610, TrbL, TrbL/VirB6 plasmid conjugal transfer protein.	1.32637e-18
NZ_CP021200.1\|WP_013521309.1\|1216348_1217080_+\|lytic-transglycosylase-domain-containing-protein	gnl\|CDD\|381613	cd16892, LT_VirB1-like, VirB1-like subfamily. This subfamily includes VirB1 protein, one of twelve proteins making up type IV secretion systems (T4SS). T4SS are macromolecular assemblies generally composed of VirB1-11 and VirD4 proteins, and are used by bacteria to transport material across their membranes. VirB1 acts as a lytic transglycosylase (LT), and is important with respect to piercing the peptidoglycan layer in the periplasm. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc) as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL).	2.59848e-73
NZ_CP021200.1\|WP_013521324.1\|1227883_1228513_+\|type-VI-secretion-protein	gnl\|CDD\|271354	cd14262, VirB5_like, VirB5 protein family. This family contains VirB5 domains, including TraC, a VirB5 homolog encoded by the pKM101 plasmid, and similar proteins. VirB5 is one of 11 conserved proteins (VirB1-VirB11) in Agrobacterium tumefaciens, the causative agent of crown gall disease, that span the inner and the outer membrane, and is involved in type IV DNA secretion systems (T4SS) which mediate the translocation of virulence factors (proteins and/or DNA) from Gram-negative bacteria into eukaryotic cells. VirB5 assembles extracellular pili by interacting with several essential proteins. VirB2-VirB5 complex formation precedes incorporation into pili; it depends on the inner membrane protein VirB4 to interact directly with and stabilize VirB8 in order for VirB5 to bind to VirB8 and VirB10. Mutagenesis studies show that VirB5 proteins participate in protein-protein interactions important for pilus assembly and function.	5.76768e-28

>NZ_CP021200.1|WP_100248699.1|1223718_1224192_+|DUF2336-domain-containing-protein
MNEGKVNKYALATDKLTDDFILEFLANDEDPSIRRTLTLREYLPETILETLANDYQINVRNAVASREDLPSSLIEKLAEDENKYVRRTIAQRDDLSQDLVAKLANDESEVVRSAIAGRKDLSDELVEKLANDKSEEVRQSIKTNPYIKREKTKELVM
>NZ_CP021200.1|WP_013521316.1|1222762_1223365_+|hypothetical-protein
MAQEEKEKSSEQKLKDFLLNVHENNISYMTPEVKNKYEYAYEDCFTQGKDGYLVAYLHKIDDKYIATMLDEASDEFKVMKVSNKEIDLKEALIEFCIDCVDDPIKVLNDFKINPTFLFNDVELDFNEEVFIIHDDPLRGARMVVDNNVTIPYSSSHFSKSLMFENASKAQEWIDSREDKGKYLIIPINNPYTFNNKDLVM
>NZ_CP021200.1|WP_126476011.1|1222442_1222751_+|hypothetical-protein
MFDYVYEEEPLQDDLFTVNDYEEYTALNLSESLNENPIDNFEVAKIKTNKKVFKPRLTQEEKKAKLNKVILRIKERYPEAYKKFQNQKDDEKQSKLLDELIL
>NZ_CP021200.1|WP_013521314.1|1221607_1222405_+|hypothetical-protein
MKIDELSYEENKLVYQAVDPYLSDKDIEELSHNKFWEVRQNIARREDLSQDLVEKLADDEHEYVRHAVARRPDLPQELVEKLSNDENGYVRSAVAYRMDLSHELVEKLANDEDWLVREGIARKDVLTTSLFEKLANDKDSEVRCAIAEREDLSQDLVEKLADDESWYVRSSVARRENLSQKLIEKLSNDEDDDVRYTVAEREDLPESVMQILADDEYWGVRQAVASREDLPSSLIEKLANDEDWEVRQAIKTNRNIDREPQDLTM
>NZ_CP021200.1|WP_013521313.1|1220946_1221564_+|hypothetical-protein
MELKQKVKDWIEKDLIPDYNEFDEVVDEYFNLSEYIIGPEDDHEDYPVEFRLINLDNELYATFYDKSEKNIYTLGKVENGMDFENLARIEIQDWDGDPIPHLYMYGLFGREQFNEVEDNYDNPVFLFYENDGFINFYRRATNKSLEGWDYLNEINCLEEALEFPSSQEAFEYLEDMGEKIYYNHFVATAKDPINLSRERQSVLTL
>NZ_CP021200.1|WP_014840491.1|1220245_1220956_+|hypothetical-protein
MGFLMGNEMHVTTKRDRELKALILGKDLFFSSSQLIDLKMLYFDSMIDKVAGEHSIYFLHKIGGEFFISHFDMDSRCINFIAYLNDLEEFRNVLLEHLLEGNKCEKSDETKIKTLGQYSLLTTNHLNRVPPKYKGSVYLFCNPYYEELMVLTLDRQIPYCFKPLDKGLPEGILEFEKFKYALKFIKDNKLWERYKECIIVSAEKPFIFSKEDTEHDLITITSPFGEVFCKERWKWN
>NZ_CP021200.1|WP_013521311.1|1217811_1220217_+|conjugal-transfer-protein
MITADWLKNILNKQTAHVDYLPKISHHVTPELISYEDGYLAWVIQVDGMPFESQNNSHIITHFEQLNNLLTAIGKTTGNRLALWTTLQRKKRQFEREYSVDNLFTNEFLSKYVEKFKESSYFSNYFYITGVLKIDDIDEGIKEANELIALMLNGLQAYTPTLLKAYTEEDVMFSEIWEFFATLINYKHEQIPETHISQKNVIGNTDLHFGTDVCQLRTQSETLYCVSFDLKDFGISKPKILVDILNLPFEFTLTQSFVFVNSAEMQGVIDKQLNNLVSAGDLAIHQQEELLYGKGFLSAGELMFGEYHSCLVVYGESPSVASQNGSKAVSRFLNAGGFRFTKAGLSAPATYFSQIPKSPLRPRKYPKTTQNLATTFGMHNYSAGKEIGNPIGDGTAIMPLKTVSNTIYDFNFHYSNVNEDNLGDKIAGHTLILGATGTGKTTLETSLLTFTNRFNPYLFVMDLDEGMKIFLSALGGTYFTFEEGKPTGLNPFQIEDTPANREFLYTLVGVCGRNVDGTVTADEEGQIKLAVDTLFNIIDFENRNFSTLLQSIPYQNENPNSLRTRLSKWCRSTDGRFSWCLDNETNIFNHHEFTKIGFDLTDILQDKYPPTEPVLLYLFYLRSLMMERVAKEDGILCTVIEEFWYPLRFSTTSELILKMLKTDRKLGGWCVLTSQSPEDAITSDIFPAIVQQTPTKVFLPNPDAVYEGRYEFVGITRKEFDELVKLSLDSRTFLVKQSKQSAFAKLDLYGFSDEMAVLSGNSANNELLDEIIKRVDSKNPDVWYPIFKETINERRKAKKLI
>NZ_CP021200.1|WP_014840490.1|1217486_1217912_+|VirB3-family-type-IV-secretion-system-protein
MDDLPEYPTFNGLSRSAMIWGIPIMALALIVGVSMVISLILLQFIGLQGFLAFALAIPLLFMLKSISANDDQAMNILWYEVLCLLKKKNSKAFGGTNTILATKFGNTKDDYSRLVKEYFEQANRARRLLAKNKPSRNTRIN
>NZ_CP021200.1|WP_013521310.1|1217190_1217487_+|hypothetical-protein
MKKFLNLLVIIVLGGLSTVAYSAGFGDAVAGKMEELRKAILIVVGVVATIALLWQMAEGFMGKKTWPDVFQTCLWILGAGAAVAIANWVFTTGQGISF
>NZ_CP021200.1|WP_013521309.1|1216348_1217080_+|lytic-transglycosylase-domain-containing-protein
MKKLIYITLFLMAYSSNANANDYDDVIKSCSPNVAPETMRAIIRVESSFNPYAIGVVGGEVKQPKTLDEALKTVQKLKKEKLNFSMGLAQINRYNLSKYNLTEVSVFNPCSNLKASEAILSECFQRAKSEGSNDQVALQKALSCYFAGNFSTGFKKSKGLSYVDKIKRVALANEGFLVPKINPKVDYTPTPKGKGEFEKVKESEKVFNPKDSNGNDDSKQKEKKYYEWDLFNDFALEGGMYMK
>NZ_CP021200.1|WP_013521319.1|1224828_1225488_+|hypothetical-protein
MQITINNEKFDVDTKNQTITYDDKQYHQTGTFEQRQFTDSEGQKVDDDLNKKLTSALIRGYTNDKKAREKEHGGMEIKSYGDTFYVNTAEKSVLFNDEKFTQVGDFDNKKFIDSQRKEVNPKLEDKLKGALISAYVKEKEARERKNDGKEISLKGTKYYVNLDKGTIKSDHIDVTHKDDGFYDNKTNEKVTDKDTLDCLNFAENIIKKQERKQTQDLVM
>NZ_CP021200.1|WP_013521320.1|1225573_1226278_+|hypothetical-protein
MKVQKKLSSEAFELLTTYGRTIDLLISNDLIEELKETAIELREARFTKNLAFLHKIEGKYIASCFLKDDGYFQVFSISKEKPNLDEELKNYLSLYTTHPFYWFNDFKYDSFEFLNLVGPDYEDKVIICSYDEHNVEMLVKKEQEIYFDPQLALSNDEFAMPIYFNTAKEAKDFIKNRYFDDVGNKKYYLVNGKHTFRNQRIEQLSNQKILKKACEEREEENPNPNQSEGRSQSV
>NZ_CP021200.1|WP_013521321.1|1226274_1227204_+|hypothetical-protein
MSNSKYQRSIKNAQSYVEENINLTDDEKKAIDMSQTNIKDMVDDMYRLYWHHIKHPQTESDRIDVDVFVKQNVFEFFLDGEGKFSCPWEENGRLPWVENENGDEYLYSKEEFVLDNLKNTYFKVANQVLEFEYLDTPDYEKFWKKVDYQKEALPKTLDEFSKLVLNSKEYSQLNPIDEEQKILEKLELAKECIVKPIIDEYFYKRLYSDKYQSIPFIITSYRDKEIYDLINKPLDEKVFTDSDLFKKQMEDDYSNLFALDLYTRISNDLTDDEIDTFKEFCAKASKVVSDFVCETTQNHVNKKPKELVM
>NZ_CP021200.1|WP_013521322.1|1227246_1227486_+|hypothetical-protein
MNLEDIKLKLAKNNVTPSFLIKKLSNDENTYVRRMVAQREDLSQDLVEKLALDESIWVRGAIKKCYGITQEPEPQDLTM
>NZ_CP021200.1|WP_013521323.1|1227516_1227897_+|hypothetical-protein
MKNEQLKQLLNPIKEYLLSLSYSESLEKHRLIFKKYLVLRDDVGLFRELAKKDWGFLSYATDRVLKDKEVILNAIAYNPKAQKFIREYYEKGFETDIEFQIKKVEAIKKSQSLIKNDTKEVSNEIV
>NZ_CP021200.1|WP_013521324.1|1227883_1228513_+|type-VI-secretion-protein
MKLSKLFLYTVLSVGFANVHAGGIPVIDTAQLTQEAQNFLKSLAEMKNQVENQIKQITELKAQVSALTSQRGLGNVLRDELKSNIPDSWKEMYGKVGNLDILKGENFDPEGSAKNLVAMLEGTEKSFDSIKERMKKIDELTNLINTTKDIKETGDLQARIQSEQLAITNEQIKLDQLARAYEIQKEVNSKQRIRQETCSLAKWAGRTCE
>NZ_CP021200.1|WP_013521325.1|1228521_1229646_+|type-IV-secretion-system-protein
MEFVQRIFDFITTAMSSGLYNRANNIITNVVYAFSMGFTIYMLYVIWDFYQRGVDASLMDFTRKVFGWLLIIAIAFNGPNYQTIATYLYELPESLVGWINGTPMDAKYFTEMVTVINQNISNLQAQQDSAGWATKVLIGISMGIVMLLGYGGLFLTIGMYLIAKASLAVILTLGPIFIGFLLFSNTRQWGMNWISQILNYSITIGLYSIIIVIQQDTMKGLKLTNKVENHWFWGESTAVNLGDIMNFTLAIIAISAILIPVIMSIPSIASALVGGASASSQTGGFGRMAMAGATGAGTGAGAVLSRGAGMALRSANWTSGGTLGKAGNALINSGLAHKAVGVAKATKGFFRDGGGRRLGHKSALEKSRMNNPSN
>NZ_CP021200.1|WP_013521326.1|1229682_1230213_+|hypothetical-protein
MKKYLALLLLPISIACNGADKDIEMVKAYVTQTKLETNEICSDLLWYEFDSTYTNDGQLELVKLGILKKVDSKNPSKTKVALNEGASAYLERGFGDDNFSICATGKPIKTIEKIERVGTNNVIKVSLKVDNSKVSKWFLDKSLEKTKLKNMQKQFIEDEVLYFEVVNGIVWKRYSE
>NZ_CP021200.1|WP_013521327.1|1230264_1230852_+|hypothetical-protein
MKKLFISLVLVLPFAQAFAEDKQISEIRQDVLKTIPKVEEVCSNPIPLNFGENIVSEYIHLGFLRKTNKTSQSSLENAVFSDGKLIELTDEGKKYAKTDSNGKLIFCAGKVGIKIKSIEKEKENDRLYKVVVEIDKSNLADWIYDKGFQHSSNGPFIKNYTPTEEIHFLFRSRKDGSKIIEHYHLSGHPFIFKYF
>NZ_CP021200.1|WP_014840498.1|1230989_1231160_+|hypothetical-protein
MKQNKEYKLKKQRAREYSLEEDMDLEIEIPLSYEEVKAIGLDDPDYDTYSDLVEKE

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP021200_1	1.24\|227283\|34\|NZ_CP021200\|CRISPRCasFinder,CRT,PILER-CR	227283-227316	34	CP024685	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence	288796-288829	7	0.794
NZ_CP021200_1	1.27\|227482\|34\|NZ_CP021200\|CRISPRCasFinder,CRT,PILER-CR	227482-227515	34	CP024685	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence	288796-288829	7	0.794
NZ_CP021200_1	1.24\|227283\|34\|NZ_CP021200\|CRISPRCasFinder,CRT,PILER-CR	227283-227316	34	NZ_CP012100	Bacillus thuringiensis strain HS18-1 plasmid pHS18-1, complete sequence	342046-342079	8	0.765
NZ_CP021200_1	1.24\|227283\|34\|NZ_CP021200\|CRISPRCasFinder,CRT,PILER-CR	227283-227316	34	NZ_CP029455	Bacillus cereus strain FORC087 plasmid pFORC087.1, complete sequence	153352-153385	8	0.765
NZ_CP021200_1	1.27\|227482\|34\|NZ_CP021200\|CRISPRCasFinder,CRT,PILER-CR	227482-227515	34	NZ_CP012100	Bacillus thuringiensis strain HS18-1 plasmid pHS18-1, complete sequence	342046-342079	8	0.765
NZ_CP021200_1	1.27\|227482\|34\|NZ_CP021200\|CRISPRCasFinder,CRT,PILER-CR	227482-227515	34	NZ_CP029455	Bacillus cereus strain FORC087 plasmid pFORC087.1, complete sequence	153352-153385	8	0.765
NZ_CP021200_1	1.30\|227681\|34\|NZ_CP021200\|CRISPRCasFinder,CRT,PILER-CR	227681-227714	34	NZ_CP026693	Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' strain 5183 plasmid pNLP1, complete sequence	97774-97807	8	0.765
NZ_CP021200_1	1.4\|225956\|34\|NZ_CP021200\|CRISPRCasFinder,CRT,PILER-CR	225956-225989	34	MF403008	Agrobacterium phage Atu_ph07, complete genome	266155-266188	9	0.735
NZ_CP021200_1	1.8\|226219\|34\|NZ_CP021200\|CRISPRCasFinder,CRT,PILER-CR	226219-226252	34	MF403008	Agrobacterium phage Atu_ph07, complete genome	266155-266188	9	0.735

1. spacer 1.24|227283|34|NZ_CP021200|CRISPRCasFinder,CRT,PILER-CR matches to CP024685 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence) position: , mismatch: 7, identity: 0.794

atattattttcaactaacaagtttt---taatctcag	CRISPR spacer
atattcatttcaactaacaagttttctataaatt---	Protospacer
*****  ******************   *** .*

2. spacer 1.27|227482|34|NZ_CP021200|CRISPRCasFinder,CRT,PILER-CR matches to CP024685 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence) position: , mismatch: 7, identity: 0.794

atattattttcaactaacaagtttt---taatctcag	CRISPR spacer
atattcatttcaactaacaagttttctataaatt---	Protospacer
*****  ******************   *** .*

3. spacer 1.24|227283|34|NZ_CP021200|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012100 (Bacillus thuringiensis strain HS18-1 plasmid pHS18-1, complete sequence) position: , mismatch: 8, identity: 0.765

atattattttcaactaacaagttttt----aatctcag	CRISPR spacer
atattcatttcaactaacaagttttctatgaatt----	Protospacer
*****  ******************.    ***.

4. spacer 1.24|227283|34|NZ_CP021200|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029455 (Bacillus cereus strain FORC087 plasmid pFORC087.1, complete sequence) position: , mismatch: 8, identity: 0.765

atattattttcaactaacaagtttttaatctcag	CRISPR spacer
atattcatttcaactaacaagttttctatgaatg	Protospacer
*****  ******************. **    *

5. spacer 1.27|227482|34|NZ_CP021200|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012100 (Bacillus thuringiensis strain HS18-1 plasmid pHS18-1, complete sequence) position: , mismatch: 8, identity: 0.765

atattattttcaactaacaagttttt----aatctcag	CRISPR spacer
atattcatttcaactaacaagttttctatgaatt----	Protospacer
*****  ******************.    ***.

6. spacer 1.27|227482|34|NZ_CP021200|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029455 (Bacillus cereus strain FORC087 plasmid pFORC087.1, complete sequence) position: , mismatch: 8, identity: 0.765

atattattttcaactaacaagtttttaatctcag	CRISPR spacer
atattcatttcaactaacaagttttctatgaatg	Protospacer
*****  ******************. **    *

7. spacer 1.30|227681|34|NZ_CP021200|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026693 (Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' strain 5183 plasmid pNLP1, complete sequence) position: , mismatch: 8, identity: 0.765

gagaattaatcagacagcccgaat---ctattcaagc	CRISPR spacer
aagaattaatcaaacagccagaatcggctatttt---	Protospacer
.***********.****** ****   *****.

8. spacer 1.4|225956|34|NZ_CP021200|CRISPRCasFinder,CRT,PILER-CR matches to MF403008 (Agrobacterium phage Atu_ph07, complete genome) position: , mismatch: 9, identity: 0.735

ccaattagtgctttttctattcgatgttttttac	CRISPR spacer
ccaattaatgatttttctattcgatcacctgtga	Protospacer
*******.** **************  ..* *.

9. spacer 1.8|226219|34|NZ_CP021200|CRISPRCasFinder,CRT,PILER-CR matches to MF403008 (Agrobacterium phage Atu_ph07, complete genome) position: , mismatch: 9, identity: 0.735

ccaattagtgctttttctattcgatgttttttac	CRISPR spacer
ccaattaatgatttttctattcgatcacctgtga	Protospacer
*******.** **************  ..* *.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

251257 : 259118

Synechococcus_phage(28.57%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013522020.1\|251257_252190_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	9.7e-40	38.1
WP_013522021.1\|252186_252660_-	septal ring lytic transglycosylase RlpA family protein	F5B3X9	Synechococcus_phage	2.7e-22	52.0
WP_013522022.1\|252675_253551_-	RNase adapter RapZ	A0A1P8D5W0	Corynebacterium_phage	1.3e-06	31.9
WP_013522023.1\|253560_254496_-	HPr kinase/phosphorylase	NA	NA	NA	NA
WP_013522024.1\|254488_254950_-	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA
WP_013522025.1\|254960_255719_-	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.4e-20	28.6
WP_013522026.1\|255705_256335_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA
WP_013522027.1\|256338_256965_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_014840112.1\|256966_257545_-	HAD hydrolase family protein	A0A222YVZ6	Synechococcus_phage	3.1e-12	34.0
WP_014840113.1\|257555_258533_-	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	7.5e-35	35.3
WP_014840114.1\|258581_259118_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	2.1e-31	45.2

DBSCAN-SWA_2

265816 : 273393

uncultured_marine_virus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014840117.1\|265816_266293_+	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	A0A0F7LBI5	uncultured_marine_virus	2.8e-11	35.8
WP_014840118.1\|266289_266973_-	protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	4.3e-13	32.3
WP_014840119.1\|267002_267812_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_013522040.1\|267907_269170_+	polyphosphate kinase 2	NA	NA	NA	NA
WP_014840120.1\|269273_270641_+	glutathione-disulfide reductase	A0A2K5B2C5	Erysipelothrix_phage	6.8e-42	27.1
WP_013522042.1\|270649_271657_+	asparaginase	NA	NA	NA	NA
WP_014840121.1\|271660_272329_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	3.4e-55	50.5
WP_014840122.1\|272306_272738_+	6-carboxytetrahydropterin synthase QueD	A0A1U9WRB3	Streptococcus_virus	5.9e-24	43.7
WP_081482425.1\|272724_273393_+	7-carboxy-7-deazaguanine synthase QueE	A0A1V0DYC7	Dinoroseobacter_phage	7.7e-15	31.4

DBSCAN-SWA_3

334281 : 345352

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014840150.1\|334281_335493_+	aminoacetone oxidase family FAD-binding enzyme	A0A2H4PQX1	Staphylococcus_phage	5.4e-06	47.0
WP_014840151.1\|335481_336687_-	cobalamin-independent methionine synthase II family protein	NA	NA	NA	NA
WP_014840152.1\|336799_337879_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA
WP_013522104.1\|337909_338275_+	glycine cleavage system protein GcvH	NA	NA	NA	NA
WP_014840153.1\|338281_341233_+	aminomethyl-transferring glycine dehydrogenase	E3SN07	Prochlorococcus_phage	4.5e-256	49.3
WP_014840154.1\|341234_342029_+	thymidylate synthase	A6M9A2	Geobacillus_virus	1.3e-109	68.2
WP_014840155.1\|342031_342529_+	dihydrofolate reductase	A0A076GDN3	Bacillus_phage	9.8e-31	41.9
WP_014840156.1\|342529_343804_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	M1H3J6	Paramecium_bursaria_Chlorella_virus	1.9e-25	29.8
WP_014840157.1\|343849_345352_-	phosphomannomutase	A0A127AWJ1	Bacillus_phage	8.6e-38	26.2

DBSCAN-SWA_4

1025931 : 1032777

uncultured_Mediterranean_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013522700.1\|1025931_1026705_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	4.0e-31	48.0
WP_013522701.1\|1026704_1027475_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	9.8e-54	42.4
WP_014840417.1\|1027540_1028128_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_013522703.1\|1028111_1029146_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	3.8e-93	54.2
WP_013522704.1\|1029287_1030583_+	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	4.2e-65	37.1
WP_013522705.1\|1030579_1031176_-	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	4.9e-21	47.5
WP_014840418.1\|1031175_1032777_-	ABC-F family ATPase	A0A1V0SKJ1	Klosneuvirus	3.6e-58	28.5

DBSCAN-SWA_5

1138967 : 1150859

Bodo_saltans_virus(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014840457.1\|1138967_1139939_-	RluA family pseudouridine synthase	A0A2H4UV25	Bodo_saltans_virus	1.3e-07	31.6
WP_014840458.1\|1140037_1140856_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_013521238.1\|1140908_1142183_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	6.5e-95	44.4
WP_013521239.1\|1142185_1142788_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A2H4J538	uncultured_Caudovirales_phage	3.2e-28	42.3
WP_014840459.1\|1142870_1145075_-	UvrD-helicase domain-containing protein	A7KV33	Bacillus_phage	6.6e-103	36.1
WP_013521241.1\|1145077_1146349_-	RsmB/NOP family class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA
WP_013521242.1\|1146345_1146984_-	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	2.3e-24	35.7
WP_014840460.1\|1147033_1147999_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA
WP_014840461.1\|1147988_1150859_+\|tRNA	isoleucine--tRNA ligase	A0A2I2L3Y0	Orpheovirus	1.5e-75	24.9

Anti-CRISPR protein detection

Acr_ID: NZ_CP021200.1|WP_013521353.1|1250443_1250884_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: NZ_CP021200.1|WP_095696625.1|1361682_1362123_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP021200.1|WP_013521353.1|1250443_1250884_+|hypothetical-protein

1250443_1250884_+

146 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|86	0.4444444444444444	0.8835616438356164	0.8807947019867549

NZ_CP021200.1|WP_095696625.1|1361682_1362123_-|hypothetical-protein

1361682_1362123_-

146 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|86	0.43609022556390975	0.8835616438356164	0.8807947019867549

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP021200

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information