CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP021201	Taylorella equigenitalis strain 09-0932 chromosome, complete genome	3 crisprs	cas3,cas2,cas1,cas4,cas7,cas8c,cas5,DEDDh	0	0	5	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP021201_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021201_1

62608-62745

Unclear

Consensus_repeat	Method
AGCCACCAACAGCTGAAAACTCAACCTGAACCGTATACACGACCCCAGCCGT	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NZ_CP021201_1

>merge|NZ_CP021201|1|62608-62745|CRISPRCasFinder
AGCCACCAACAGCTGAAAACTCAACCTGAACCGTATACACGACCCCAGCCGTGGTCTCCAACAGTGGTTCACAGATCGAAACCCTCAGCCACCAACAGCTGAAAACTCAACCTGAACCGTATACACGACCCCAGCCGT

>NZ_CP021201|1|1|62608-62745|CRISPRCasFinder
AGCCACCAACAGCTGAAAACTCAACCTGAACCGTATACACGACCCCAGCCGT	GGTCTCCAACAGTGGTTCACAGATCGAAACCCTC
AGCCACCAACAGCTGAAAACTCAACCTGAACCGTATACACGACCCCAGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021201.1\|WP_014840011.1\|71910_72561_+\|DUF4390-domain-containing-protein	unknown	unknown	gnl\|CDD\|373018
NZ_CP021201.1\|WP_013521867.1\|65570_66401_-\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|239648
NZ_CP021201.1\|WP_015555558.1\|62814_64176_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP021201.1\|WP_013521872.1\|70667_71945_+\|16S-rRNA-(cytosine(967)-C(5))-methyltransferase-RsmB	unknown	unknown	gnl\|CDD\|236790
NZ_CP021201.1\|WP_013521854.1\|54048_54927_+\|type-III-pantothenate-kinase	unknown	unknown	gnl\|CDD\|367441
NZ_CP021201.1\|WP_014840006.1\|60084_61071_+\|lipoyl-synthase	unknown	unknown	gnl\|CDD\|235493
NZ_CP021201.1\|WP_013521864.1\|61071_62571_+\|GDP-mannose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|187557
NZ_CP021201.1\|WP_013521861.1\|58948_59326_+\|outer-membrane-protein-assembly-factor-BamE	unknown	unknown	gnl\|CDD\|225465
NZ_CP021201.1\|WP_013521857.1\|55743_57036_+\|D-alanyl-D-alanine-carboxypeptidase	unknown	unknown	gnl\|CDD\|224600
NZ_CP021201.1\|WP_054393504.1\|64176_65559_-\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	unknown	unknown	gnl\|CDD\|224128
NZ_CP021201.1\|WP_015555563.1\|72533_74855_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|227333
NZ_CP021201.1\|WP_013521868.1\|66433_67312_-\|RNA-polymerase-sigma-factor-RpoH	unknown	unknown	gnl\|CDD\|235838
NZ_CP021201.1\|WP_013521860.1\|58229_58883_+\|lipoyl(octanoyl)-transferase-LipB	unknown	unknown	gnl\|CDD\|237681
NZ_CP021201.1\|WP_014840004.1\|55089_55734_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225496
NZ_CP021201.1\|WP_014840008.1\|68296_69670_-\|ATP-dependent-RNA-helicase-DbpA	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|236977
NZ_CP021201.1\|WP_054393502.1\|57930_58230_+\|DUF493-family-protein	unknown	unknown	gnl\|CDD\|377327
NZ_CP021201.1\|WP_013521871.1\|69718_70675_+\|methionyl-tRNA-formyltransferase	unknown	unknown	gnl\|CDD\|234567
NZ_CP021201.1\|WP_044956189.1\|67464_68334_+\|lipid-A-biosynthesis-acyltransferase	unknown	unknown	gnl\|CDD\|236348
NZ_CP021201.1\|WP_013521858.1\|57058_57934_+\|D-amino-acid-aminotransferase	unknown	unknown	gnl\|CDD\|238799
NZ_CP021201.1\|WP_013521862.1\|59385_59880_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP021201.1\|WP_014840011.1\|71910_72561_+\|DUF4390-domain-containing-protein	gnl\|CDD\|373018	pfam14334, DUF4390, Domain of unknown function (DUF4390). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 192 and 203 amino acids in length.	1.65851e-42
NZ_CP021201.1\|WP_013521867.1\|65570_66401_-\|NUDIX-domain-containing-protein	gnl\|CDD\|239648	cd03676, Nudix_hydrolase_3, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	4.87664e-42
NZ_CP021201.1\|WP_015555558.1\|62814_64176_-\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	7.01198e-40
NZ_CP021201.1\|WP_013521872.1\|70667_71945_+\|16S-rRNA-(cytosine(967)-C(5))-methyltransferase-RsmB	gnl\|CDD\|236790	PRK10901, PRK10901, 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB.	9.82434e-158
NZ_CP021201.1\|WP_013521854.1\|54048_54927_+\|type-III-pantothenate-kinase	gnl\|CDD\|367441	pfam03309, Pan_kinase, Type III pantothenate kinase. Type III pantothenate kinase catalyzes the phosphorylation of pantothenate (Pan), the first step in the universal pathway of CoA biosynthesis.	7.98796e-38
NZ_CP021201.1\|WP_014840006.1\|60084_61071_+\|lipoyl-synthase	gnl\|CDD\|235493	PRK05481, PRK05481, lipoyl synthase; Provisional.	0
NZ_CP021201.1\|WP_013521864.1\|61071_62571_+\|GDP-mannose-4,6-dehydratase	gnl\|CDD\|187557	cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs. This subgroup contains dTDP-D-glucose 4,6-dehydratase and related proteins, members of the extended-SDR family, with the characteristic Rossmann fold core region, active site tetrad and NAD(P)-binding motif. dTDP-D-glucose 4,6-dehydratase is closely related to other sugar epimerases of the SDR family. dTDP-D-dlucose 4,6,-dehydratase catalyzes the second of four steps in the dTDP-L-rhamnose pathway (the dehydration of dTDP-D-glucose to dTDP-4-keto-6-deoxy-D-glucose) in the synthesis of L-rhamnose, a cell wall component of some pathogenic bacteria. In many gram negative bacteria, L-rhamnose is an important constituent of lipopoylsaccharide O-antigen. The larger N-terminal portion of dTDP-D-Glucose 4,6-dehydratase forms a Rossmann fold NAD-binding domain, while the C-terminus binds the sugar substrate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	9.73838e-125
NZ_CP021201.1\|WP_013521861.1\|58948_59326_+\|outer-membrane-protein-assembly-factor-BamE	gnl\|CDD\|225465	COG2913, OlmA, Outer membrane lipoprotein OmlA (small protein A) [Cell envelope biogenesis, outer membrane].	1.01291e-16
NZ_CP021201.1\|WP_013521857.1\|55743_57036_+\|D-alanyl-D-alanine-carboxypeptidase	gnl\|CDD\|224600	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane].	2.46399e-123
NZ_CP021201.1\|WP_054393504.1\|64176_65559_-\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	gnl\|CDD\|224128	COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane].	0
NZ_CP021201.1\|WP_015555563.1\|72533_74855_+\|HAMP-domain-containing-protein	gnl\|CDD\|227333	COG5000, NtrY, Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms].	5.74292e-151
NZ_CP021201.1\|WP_013521868.1\|66433_67312_-\|RNA-polymerase-sigma-factor-RpoH	gnl\|CDD\|235838	PRK06596, PRK06596, RNA polymerase factor sigma-32; Reviewed.	4.19528e-161
NZ_CP021201.1\|WP_013521860.1\|58229_58883_+\|lipoyl(octanoyl)-transferase-LipB	gnl\|CDD\|237681	PRK14342, PRK14342, lipoyl(octanoyl) transferase LipB.	4.9446e-93
NZ_CP021201.1\|WP_014840004.1\|55089_55734_+\|alpha/beta-hydrolase	gnl\|CDD\|225496	COG2945, COG2945, Predicted hydrolase of the alpha/beta superfamily [General function prediction only].	1.13848e-54
NZ_CP021201.1\|WP_014840008.1\|68296_69670_-\|ATP-dependent-RNA-helicase-DbpA	gnl\|CDD\|236977	PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional.	0
NZ_CP021201.1\|WP_054393502.1\|57930_58230_+\|DUF493-family-protein	gnl\|CDD\|377327	pfam04359, DUF493, Protein of unknown function (DUF493). This domain is likely to act in a regulatory capacity like pfam01842 domains. This domain has a remarkable property in that the C-terminal residue of every protein in the family lies up in the alignment. This suggests that the C-terminal residue plays some important functional role (Bateman A pers obs).	6.13876e-37
NZ_CP021201.1\|WP_044956189.1\|67464_68334_+\|lipid-A-biosynthesis-acyltransferase	gnl\|CDD\|236348	PRK08905, PRK08905, lysophospholipid acyltransferase family protein.	1.00686e-90
NZ_CP021201.1\|WP_013521858.1\|57058_57934_+\|D-amino-acid-aminotransferase	gnl\|CDD\|238799	cd01558, D-AAT_like, D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids. It plays a major role in the synthesis of bacterial cell wall components like D-alanine and D-glutamate in addition to other D-amino acids. The enzyme like other members of this superfamily requires PLP as a cofactor. Members of this subgroup are found in all three forms of life.	1.40741e-108
NZ_CP021201.1\|WP_013521871.1\|69718_70675_+\|methionyl-tRNA-formyltransferase	gnl\|CDD\|234567	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed.	4.39315e-155

>NZ_CP021201.1|WP_013521864.1|61071_62571_+|GDP-mannose-4,6-dehydratase
MRVLVTGGCGFIGHHFVDFATNHSSKIYKKVLNLDNLSYASINCPNGDFILGDICDEGLLYKVLREHKIDTLVHFAAQTHVDRSIQNPTPFVTDNIQGTISLLTCCTEYIKETGVNFKFVYISTDEVYGSIAPNTSPLSETQPLHPRNPYAVSKASAELFVQAWVNTFAFPAVITRSSNNYGTGQHTEKFIPKIIDRALKWSSIPIYGNGHASREWLHVLDNCEAIHGLLTSDIKFKGQVFNITSSDSYTNIDLANMVCEKLDELKPHSKGSYKQLIEFVDDRPGHDMRYAIDSSKIKSTLSWTPTRLIADHINELVEGASPEVLPHTEKAHLLHFPKYTDTRGSVSPRELHALHNQTGTNFVQENFTKSVLGTLRGLHFQRERPQAKLIQVLEGKILDVVVDLRPHSDEFGTWKSFKLKQGDSLFVPAGYAHGYLTLSESSYVLYKLSDFYDPKDQYSIRYDDQYLNIDWGGEISADDYVLSPKDRQGMTWSEFLNSI
>NZ_CP021201.1|WP_014840006.1|60084_61071_+|lipoyl-synthase
MTLQKTTPADKDLSYDATKKQKSFDKTSRIPIKIVPAEKLKKPEWIRVKVAPTNSKFSEIKGILRENKMVTVCEEASCPNIGECFGRGTATFMIMGDKCTRRCPFCDVGHGRPDPLDTSEPHNLAQSIARMGLSYVVITSVDRDDLRDGGAQHYVDCINEIRNQSPKTKIEVLVPDFRGRLERALDIFSKGLPDVMNHNLETVPRLYKQARPGADYLHSLKLLKNFKTLYPDVPTKSGLMVGLGESDEEILDVMMDMREHNIDMLTIGQYLQPSDHHLPVLRYVTPKTFSMFEEKAEQMGFSHAAVGALVRSSYHADQQAHQAGLETA
>NZ_CP021201.1|WP_013521862.1|59385_59880_+|hypothetical-protein
MFMGLSGWLAVYLALDLAWGAFIAIFLVREVSNYLNVLQVYSGTQIYIFLAITLILLAFQIWILYKRIPALMAKNRSPETPNLVVKTMWYEIVPLLVYALINIYFAVSFGLNSSKTIISYVVLLAIVSVIKFAWTKYYQQSPNVRNTFGSNANADVANLLKPQK
>NZ_CP021201.1|WP_013521861.1|58948_59326_+|outer-membrane-protein-assembly-factor-BamE
MKKFALPLVLSLGLTACGSLTQVSPEGQPQSDIKWPEVNSGITGTMPPKQTVRELKTGMHKNDFYNLIGVPHFSEGWDVREWDYLFRVEDKGVMKQCQFKILFDKDNRAKNFYWKPVECAGLYAQ
>NZ_CP021201.1|WP_013521860.1|58229_58883_+|lipoyl(octanoyl)-transferase-LipB
MADPLESKVQIKDFEGFSDYQSIFTLMKSFSDSRDFDSDDELWVLQFNPVYTLGVAGDPKHVLNPKQIPVIRTNRGGQVTYHGPGQIVVYPLLNLHRKNLFVKEYVNLIEESVIDTLKLIGIPNAQRMPGAPGVYVPNSDNSLSKIASLGIKVTKGFSYHGFALNVDMDLSPFLGINPCGYEHLKVIDIKTIASNCKIDKIKFVLIERLLSRLKLLK
>NZ_CP021201.1|WP_054393502.1|57930_58230_+|DUF493-family-protein
MSEKSDLTFPDISPEDSLIEYPSDFPIKVMALSGDAVLDELLGLVQSHDEGFIRETVEIRPSSKGTYVGYTFTIKATSREQLDNLYRALHSHEKVKMVL
>NZ_CP021201.1|WP_013521858.1|57058_57934_+|D-amino-acid-aminotransferase
MNPLIQGVDIDYPVYLNGEMVNISEAKISVLDRGFIFGDGIYEVVPAYNRKPFRMDHHVARLMRSLKKIGIEVGKDEQFFKDIFTKLIKESPWENNFVYLQVTRGVAARTHAFPNPKVEPTIFAMSMKFNPPSEKVRTEGIAVVSFEDMRWLHCDIKSISLLGNVLANQHAVDSGVYEVIQFRDGFLTEGSCSNFWIVKDGKFMGPLKDNLKLEGIRFGLFEELAQKAGIPFELRKITKEEVYEADEIMISSASKEVTAVTQLDGKPVGDGKPGPIYAKMRKAHDEVLAAL
>NZ_CP021201.1|WP_013521857.1|55743_57036_+|D-alanyl-D-alanine-carboxypeptidase
MTRRKSPVKLILILLLLVLGIFVAIKFFNAKHSSTKHTESNIIASPVVPLKPSIRDHSERSSIIPTTKDTPALADVAGIAIPQLDVKSWIIIDMESGQIIAQYNPDLKVAPASLTKLMTSSLVFEAIKDKRISLDQEVIVSERAWKTGGSRMFINVNKKVTIGELLQGMIVQSGNDASIQLAESVSGTIDAFVKEMNDSLQAFHMLNSHFADPTGLPSPNTYTTARDLSVLAQHIIVDFPQFYHYFSQPEFTYNKIRQTNTNGLLGKIEGLDGLKTGHTDEAGYCLVTSVKRNNRRILTILMGADSIKHREQLSKQLIDWTFQNFVNIEWAKANTPFVEHSIRDAKNKKAVFQSTKPVVITVPRGHEANIQVLSNTSNDLKAPLKAGQAFAEAQFALNGKLLKNERLVLAHDVERAGFFKRLLNRITSVF
>NZ_CP021201.1|WP_014840004.1|55089_55734_+|alpha/beta-hydrolase
MKTQALKIPSPIGVIECDIDWPSDEGQSDITGWALCLHPHPLFDGTKNNKVITTFSRACVSMGYVCFRPNFRGVGGSEGKFDDSVGETQDMRFLIDYIKQNFPQFQNKPWVLGGFSFGSAVAAQLHQTLKDESLELPSALILLGVAVWKYAKKEVELPSKTLLIHGSDDEIIPLKDVLEWLKNYELPLVTIPNSGHFFHGKLIIIKKLIEEFLR
>NZ_CP021201.1|WP_013521854.1|54048_54927_+|type-III-pantothenate-kinase
MDKICILIDSGNTRIKARAFVVGHPDASSDLNKAIIDEITIYNQEYARILGFVEKIQRQGQIVKVYGISVATENIRSDLENVFVSLNLKKAKEFKQSEPIIWLESEEKAFSLTNMYESPKQLGVDRWFGIIGAHYHLTQQLKDDSNRALIHVSFGTATTVDCMHNEQLIGGTILPGLQMMFDSLFRGTAHLPKVATSASDIVNFPLNTHAAIQTGVVCAQAGAVFRQVQKLWFLTTQVPYVFISGGAKDTIVDEIRSICSHWSTAAGLPSVECIELETTVLDGLQYFVSKEM
>NZ_CP021201.1|WP_015555558.1|62814_64176_-|MFS-transporter
MATTHEGLKKPQIYWAATCVFAVIAVCVIDGIITNIALPTIQSYFGVSQQESIWVVNAYNIVLISTLFTFSSLADRYGFKRLLRVGLIVFGVGAFGSLMSQSLSMLIMCRIVQGFGAALIMALTGGLIRNIYPKERVAMGIAFNGMVIGACALIAPSLGAFIIKIADWHWIYGFSIPIIALGLFLSRFLPRLPRHDKSIDYKSAILNAVTFGSLVAGLDIIYSNPLWGSLLLIISITSVVTLYRHALSQEHPMVPVDLLKIVPFRDAALVSTFAFLSATASMVSVPFYFEHILHYNTETVGLIYSSWPVAGVIMGPVSAKLSERFSAGLLSGIGSLILMCGITTLTYLPTDSSKLVFALAMFVGGLGFGLLQTPNGKTLLLSAPHNRASAAGGMQATSRILGQCLGGALVATSFSINSQQGAHYGLIVSIITAFIAVLINLYRILSKQDRQVM
>NZ_CP021201.1|WP_054393504.1|64176_65559_-|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU
MILNIVILAAGKGKRMKSNLPKVLHKIASKPMLMHVLDTASELQADTTTVVIGHGADKVKNACEGIENLNFALQDPPQGTGHAVLQASSFLKVGDADNSKTLILYGDVPLIQAYTLKKLIESSGAGVGLLTEYLEDPTGYGRIIRNSSGFVESIVEQKDASEDELKIKEINTGIICAPTSNLLTWLTEIKNDNAQGEYYLTDIIKFANRDGVPIIATQAYTQFETAGVNSRLQLAGLEEQYQKNKAYELLDDGVSIVDPSKFMLRGKLSCESDVTIDIGCIFEGDVEIKSGAHIGPYCIIKDSIIGSNARIEAFSHIDGATLSNDVVVGPYARLRPGTNLKDHSHVGNFMELKKTTLGSYSKANHLSYLGDATIGDRVNVGAGTITCNYDGVNKFQTIIEDEAFIGSDTQLVAPVTVGKGATVAAGTTVMKDVPASQLVLNKKTQDVISGWQRPQKKKDS
>NZ_CP021201.1|WP_013521867.1|65570_66401_-|NUDIX-domain-containing-protein
MHLPDLKDLKKSLNDRASLPPIEGSHDLIFNDHHIGFVHPSIMEDFIGFAYVKFSSGKFKIDMHKELLGLADPELFFAYKCQYFNQLAQYLRNKGHAKHWRNEQLSIWSGETEIAHVERAVSRELGIMTKAVHVNAWTREKKIYLSLRAPTKSTDPNKWDTLVGGLVSANESLEYALMRESVEEAGLHLEPIPLIIPLHYITTMNRPLIEGYQVEEVFNADYLIPDDVHLENQDGEVTKIEAFSIDEIIEKINNDEVTLEASIVLLDSIERIAKQV
>NZ_CP021201.1|WP_013521868.1|66433_67312_-|RNA-polymerase-sigma-factor-RpoH
MSNQSFALQTHKSMDLINPSALGTIEAYIQEVNRIPILTAEQERDYAERLQKSGDLKAAQALILPHLRLVVSVARQYLGYGLPHADLIQEGNIGLMKAVKRFDVSRGVRLVTFAMHWIKAEIHEYVIRNWRLVKIATTKAQRKLFFNLNSLRPEGKSLDNDDIVGIAKKLNVRPEDVVEMEKRMSGHDIALDTLMDEDDDYAPIQYLADDEAYEPENVMLAQEHDKLENQGLKSALDQLDDRSRHIIESRWLSEDKPTLHDLAAQYNVSAERIRQIENAAIKKMRSYLEDYV
>NZ_CP021201.1|WP_044956189.1|67464_68334_+|lipid-A-biosynthesis-acyltransferase
MLLKIIKFWGSLPLSFLQRMGRFLGLVIYSVSRKKYAFRIDDHINTAGYYSKSFHKEATKQIGAMFGEMPYIWFNSVKALQKLELKTPEVLEKLKSKKNQSYLFLSLHLGCFEIVSRFLALHFPVVVMYRPAKKEFFEPVLSQVRTSENLTSVPTNFTGVREFLRALRSGRSIGLLPDQVPATADGVWVKFFDRDAYTITLPGKLTNQTDGQVVIVYAIRKKVGEGWEIYFKEGPELKGLPETEQAQLINNELEEAIRKAPTQYLWSYNRFREPPYAPNPSNASSKSDS
>NZ_CP021201.1|WP_014840008.1|68296_69670_-|ATP-dependent-RNA-helicase-DbpA
MQNFSELPLSESQISNLSSLGFIQMRPVQARSLPHILEGSDVRTLAKTGSGKTLAFGLGIIQKINPSFFACQGLVLTPTHELADQVAQEIRKLARALPNIKVLTLCGGVALRPQIESLKHGAHIIVGTPGRILDLIQRGDLDLSKVKVFVLDECDRMLDMGFFDDIGEISKATPLRKQTLLFSATFPEHIKKISEGFQRNPVHIELIEEEKVPTNLDHIFFKTSDSERFAHSVQILKHYQPISTLAFCNTRTQCEKLSSFLNEQNISSKFLHGEMEKREREDVLLQFSNKSLSVLVATDVAARGLDIEGLDAVLNIELSPNVPTHIHRIGRTGRHSDRGLVFNLVTPEEMYRFDRIDAQIPLESKWEKIPSNTRKRNLVAPMRTISIKGGKKDKLRKVDLIGAMTKHLQIPFEDIGKIHVADFVSFIAVKHENAEDILNRMQEIPIKNRSWMMRLMD
>NZ_CP021201.1|WP_013521871.1|69718_70675_+|methionyl-tRNA-formyltransferase
MKIVFAGTPDFARVAYEALLESGHEIPLVMTQPDRPAGRGMKLQSSPVKVSALNHNSKVIQPVSLRLTVGKLGPQAVEQATEAKRELENIKPDVMVVAAYGLILPQWVLDLPRYGCLNIHASLLPRWRGAAPIQRAIEAGDAETGISIMQMDAGLDTGDVLLMKSLAIDGMNSSQLHDKLAVLGGDAITEVMSNIESFRRTPKKQPEEGITYAEKIAKSEGLLDWNEETEILERKIRAFNPFPGVTLALPNLEVKVWKSAVSDLKKPADAIPGQVLKISSEGIEVATKDGVLRLLELQKAGAKKQDVATFINGWHLDG
>NZ_CP021201.1|WP_013521872.1|70667_71945_+|16S-rRNA-(cytosine(967)-C(5))-methyltransferase-RsmB
MAEQIALSTLLVSSSKLVRDVMGGQSTSDLLPKVDITIRAGVHAISFHALRHYGKALSIANKLLTKSPPNSLFLNLLCVSLSLLIVDDSELFDEQPVYKEFVVLDESVNACSKMPKTASFKGLLNACLRNFLRNKTELIRGLNIYENLSYPQWWYEKLKNSYPNTYLEVLNADKKYAPINLRINTRKISRADYLKLLSTQNIEFEEIGESGIKLSKSVNIATLPGYDEGLFSVQDIGAQNAAFQLPIKNGDYVLDACSAPGGKAAHLLERFDIDLLCMDADKERLERVKENLNRLDLLGQNVHLLEGDASLKDWWDGRKFDAILADVPCTGSGVVRRHPDIKWLRKEVDVIKTVELQRKIIINLWDMLKFGGYLLYVTCSVFKEEGELQAQYFTTKLEGIERLPSLGHIFPPKQDGFFYALFKKN
>NZ_CP021201.1|WP_014840011.1|71910_72561_+|DUF4390-domain-containing-protein
MDFSMHFLRKIKFAMYASSLAICLVIASFTFFNKSVYAQTEAISTPAETEAPIKSSAVFTEINPTKIDNYSLSLSTKINLQLDSELRQALSKGLPLYFTLDARFYQKRGYWFDKLIAQQSLTWMIHYNVLLREWRIERGPYVAKGYSLEDAIDLITTNDDWKILLNEPMDSSKKYYGKVRLRLDTSLLSRPFQISAFSDSSAWSFSSSWAKFQIHH
>NZ_CP021201.1|WP_015555563.1|72533_74855_+|HAMP-domain-containing-protein
MGKISNSSLSRTKKFLRNLLRFSLMVAVILSAVLLYFLFQSSGNESRFENRFDLLMLFNATLAIALFIWLLSLIIGIVKQVKQKRFGARLTSKLIFFFTLIAIVPGVVVYVLSTQYVSRYIESWFNNKVDSALSSGIYLGQSSLDAMIIDQLSNARNLSDRLYNVPEDQLSNALNSLRENFSSFDLLVFSSGGNRVIAFSSSTFGSLLPKMPPNNVMSQLRISRQYASAEESLAVDESGMQAPQYILRVIVPIFSSDNRLDGSIASLREPNWLQLTRLVPASMSENLKAVQTGYQNYQELNLSRQGILKIFSITMIMALLLTTFASLAIVLWMARRLVEPLLTLAEGTQAVAAGDYRSIPDSNQSDELGQLSRSFNLMVAQLTEARSQVDRHRRSIEQSNDFLEGVLAGLTNGVIVLDSEFRITRVNKGAQNILHEDLDLMIGQPMQDNLSEFGRLVKSAFVSHAAVGSLRSYWQEQIELDINDEGEDKKITLLLRGTKLMTPNGINYLLVFDDISEVISLNRSVAWGEVARRLAHEIKNPLTPISLSAERIKYKLIDKLDEDDAKFLDRLTTTIVNQVVSLKTMVDDFREYARTPPAQFQSVNVEDLLMDIAHLYGWSAEGYKIEEESLDIAPIDVSRQIKLDIEPDMPLVLADPTQLRQVFNNLLSNSRDAMENMELSGSEPGVTIRACAVQLEDGELGVKVEFLDRGPGFPAQILQKAFEPYVTTKAHGTGLGLAIVRKIIDEHQGKIDITNRTEGGAKISILLTRIVKN

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP021201_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021201_2

205439-205737

TypeI

Consensus_repeat	Method
GTTTAAACACACAGCCACGCGTACGTGGCTGA	CRISPRCasFinder
AGTTTAAACACACAGCCACGCGTACGTGGCTGA	PILER-CR

4 spacers

cas3,cas2,cas1,cas4,cas7,cas8c,cas5

The CRISPR arrays of NZ_CP021201_2

>merge|NZ_CP021201|2|205439-205737|CRISPRCasFinder,PILER-CR
GTTTAAACACACAGTCAAGCGAACGTGACTGAACTTTTGAAGTTTACTTCCGAATAAGTAGTTTAGAAGTTTAAACACACAGCCACGCGTACGTGGCTGATCAGTAAGTGCCATTCAACCCGTCCTTCCAGTTAGTTTAAACACACAGCCACGCGTACGTGGCTGATCAGTAAGTGCCATTCAACCCGTCCTTCCAGTTAGTTTAAACACACAGCCACGCGTACGTGGCTGACAATGCCTTTGCGACGTTCGGCGTGAAATTTCTCTGTTTAAACACACAGCCACGCGTACGTGGCTGA

>NZ_CP021201|2|2|205439-205737|CRISPRCasFinder
GTTTAAACACACAGTCAAGCGAACGTGACTGA	ACTTTTGAAGTTTACTTCCGAATAAGTAGTTTAGAA
GTTTAAACACACAGCCACGCGTACGTGGCTGA	TCAGTAAGTGCCATTCAACCCGTCCTTCCAGTTA
GTTTAAACACACAGCCACGCGTACGTGGCTGA	TCAGTAAGTGCCATTCAACCCGTCCTTCCAGTTA
GTTTAAACACACAGCCACGCGTACGTGGCTGA	CAATGCCTTTGCGACGTTCGGCGTGAAATTTCTCT
GTTTAAACACACAGCCACGCGTACGTGGCTGA

>NZ_CP021201|2|1|205506-205737|PILER-CR
AGTTTAAACACACAGCCACGCGTACGTGGCTGA	TCAGTAAGTGCCATTCAACCCGTCCTTCCAGTT
AGTTTAAACACACAGCCACGCGTACGTGGCTGA	TCAGTAAGTGCCATTCAACCCGTCCTTCCAGTT
AGTTTAAACACACAGCCACGCGTACGTGGCTGA	CAATGCCTTTGCGACGTTCGGCGTGAAATTTCTC
TGTTTAAACACACAGCCACGCGTACGTGGCTGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021201.1\|WP_014840106.1\|210578_211295_-\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
NZ_CP021201.1\|WP_095686515.1\|212108_215018_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224037
NZ_CP021201.1\|WP_013522002.1\|217884_218802_+\|oligopeptide-ABC-transporter-permease-OppC	unknown	unknown	gnl\|CDD\|185304
NZ_CP021201.1\|WP_044962106.1\|207203_207833_-\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NZ_CP021201.1\|WP_095686513.1\|200128_200641_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224292
NZ_CP021201.1\|WP_014840104.1\|207822_208671_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NZ_CP021201.1\|WP_013521987.1\|195931_197002_+\|uroporphyrinogen-decarboxylase	unknown	unknown	gnl\|CDD\|234644
NZ_CP021201.1\|WP_013521986.1\|194864_195887_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|376971
NZ_CP021201.1\|WP_044953912.1\|206206_207220_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP021201.1\|WP_014840105.1\|208683_210576_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	gnl\|CDD\|187887
NZ_CP021201.1\|WP_044962103.1\|202582_204973_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP021201.1\|WP_013522000.1\|215258_216893_+\|peptide-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|185059
NZ_CP021201.1\|WP_014840099.1\|200933_202580_+\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|237969
NZ_CP021201.1\|WP_013521984.1\|192599_193940_+\|esterase-like-activity-of-phytase-family-protein	unknown	unknown	gnl\|CDD\|226675
NZ_CP021201.1\|WP_095686514.1\|205910_206204_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP021201.1\|WP_013521988.1\|197230_199273_+\|primosomal-protein-N'	unknown	unknown	gnl\|CDD\|235514
NZ_CP021201.1\|WP_013521983.1\|191902_192469_-\|ATP-dependent-protease-subunit-HslV	unknown	unknown	gnl\|CDD\|235477
NZ_CP021201.1\|WP_044962102.1\|199280_200006_+\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
NZ_CP021201.1\|WP_013522001.1\|216954_217875_+\|oligopeptide-ABC-transporter-permease-OppB	unknown	unknown	gnl\|CDD\|181886
NZ_CP021201.1\|WP_014840094.1\|194008_194494_-\|RNA-polymerase-binding-protein-DksA	unknown	unknown	gnl\|CDD\|274124

Protein	Function_ID	Function_description	E-value
NZ_CP021201.1\|WP_014840106.1\|210578_211295_-\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	9.36082e-82
NZ_CP021201.1\|WP_095686515.1\|212108_215018_+\|ATP-binding-protein	gnl\|CDD\|224037	COG1112, COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair].	2.42993e-18
NZ_CP021201.1\|WP_013522002.1\|217884_218802_+\|oligopeptide-ABC-transporter-permease-OppC	gnl\|CDD\|185304	PRK15406, PRK15406, oligopeptide ABC transporter permease OppC; Provisional.	0
NZ_CP021201.1\|WP_044962106.1\|207203_207833_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	1.14845e-29
NZ_CP021201.1\|WP_095686513.1\|200128_200641_+\|ATP-binding-protein	gnl\|CDD\|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	1.05704e-19
NZ_CP021201.1\|WP_014840104.1\|207822_208671_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	9.08852e-104
NZ_CP021201.1\|WP_013521987.1\|195931_197002_+\|uroporphyrinogen-decarboxylase	gnl\|CDD\|234644	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated.	0
NZ_CP021201.1\|WP_013521986.1\|194864_195887_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|376971	pfam02954, HTH_8, Bacterial regulatory protein, Fis family.	5.52245e-07
NZ_CP021201.1\|WP_044953912.1\|206206_207220_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	6.93046e-178
NZ_CP021201.1\|WP_014840105.1\|208683_210576_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|187887	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein, distant homologs of Cas8 proteins; signature gene for I-C subtype; also known as Csd1 family.	6.48856e-112
NZ_CP021201.1\|WP_044962103.1\|202582_204973_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	4.4473e-55
NZ_CP021201.1\|WP_013522000.1\|215258_216893_+\|peptide-ABC-transporter-substrate-binding-protein	gnl\|CDD\|185059	PRK15104, PRK15104, oligopeptide ABC transporter substrate-binding protein OppA; Provisional.	0
NZ_CP021201.1\|WP_014840099.1\|200933_202580_+\|U32-family-peptidase	gnl\|CDD\|237969	PRK15452, PRK15452, putative protease; Provisional.	2.77757e-168
NZ_CP021201.1\|WP_013521984.1\|192599_193940_+\|esterase-like-activity-of-phytase-family-protein	gnl\|CDD\|226675	COG4222, COG4222, Uncharacterized protein conserved in bacteria [Function unknown].	2.94984e-118
NZ_CP021201.1\|WP_095686514.1\|205910_206204_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.98e-28
NZ_CP021201.1\|WP_013521988.1\|197230_199273_+\|primosomal-protein-N'	gnl\|CDD\|235514	PRK05580, PRK05580, primosome assembly protein PriA; Validated.	0
NZ_CP021201.1\|WP_013521983.1\|191902_192469_-\|ATP-dependent-protease-subunit-HslV	gnl\|CDD\|235477	PRK05456, PRK05456, ATP-dependent protease subunit HslV.	1.21023e-127
NZ_CP021201.1\|WP_044962102.1\|199280_200006_+\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	9.33585e-64
NZ_CP021201.1\|WP_013522001.1\|216954_217875_+\|oligopeptide-ABC-transporter-permease-OppB	gnl\|CDD\|181886	PRK09471, oppB, oligopeptide ABC transporter permease OppB.	0
NZ_CP021201.1\|WP_014840094.1\|194008_194494_-\|RNA-polymerase-binding-protein-DksA	gnl\|CDD\|274124	TIGR02420, RNA_polymerase-binding_transcription_factor_DksA, RNA polymerase-binding protein DksA. The model that is the basis for this family describes a small, pleiotropic protein, DksA (DnaK suppressor A), originally named as a multicopy suppressor of temperature sensitivity of dnaKJ mutants. DksA mutants are defective in quorum sensing, virulence, etc. DksA is now understood to bind RNA polymerase directly and modulate its response to small molecules to control the level of transcription of rRNA. Nearly all members of this family are in the Proteobacteria. Whether the closest homologs outside the Proteobacteria function equivalently is unknown. The low value set for the noise cutoff allows identification of possible DksA proteins from outside the proteobacteria. TIGR02419 describes a closely related family of short sequences usually found in prophage regions of proteobacterial genomes or in known phage. [Transcription, Transcription factors, Regulatory functions, Small molecule interactions].	2.17852e-43

>NZ_CP021201.1|WP_044962103.1|202582_204973_-|CRISPR-associated-helicase/endonuclease-Cas3
MFIAHTRTLDSVTQPLDAHLMNVGSLSEKFAQKLNLGEIGALLGLLHDLGKFSDNFQNYIKYNSFNSDKDDAEINNNIHISRVDHSTCGAQWIKDHFLNSNNNVLLGQILSICIASHHGKGLIDVINNNEKTWFNRLKKSRLETNFQSALSNAVNSNSIALKKAVELKESSFDTFNKHISSLYNSNNLSYIEKKFYLGCLTKFLFSCLIDADRIDSADFESNTSTSDRNIFRNYEWDIALKTLENHLKNFSSESDIQKIRESISNKAFECGSKPKNIFKFTVPTGGGKTLSSLRFALKHCLEHKLDRIIYVIPFTSIIDQNAQVVRKVLGDEWVHEHHSNIEPEEVTWKNKLISSNWDKPIIFTTMVQFLDSWFSIGTRGVRHIHPMTNSVIIFDEIQSLPLKCTYLFCNVINWLNLYGNSSIVLSTATQPPLELLEPKENGALKFDNDSEIIGNLNEVDELYDNLSRVNIHFDSVKKDIDKTFSFVKEISNSENKILFIANTKKTVLDLFNKFKENNYSLENIYALTTYQCPSHRKAIINELKEKLRNNEKTVCISTQLIEAGVDISFQTVIRVLAGLDSIAQAAGRCNRNKEQDKGNLYIIDVLENLDKLPEISNAKVSVQAVLHEFNNDLHKILKPDAINKYFKQYYELQRNELIYPIESEQTSMLDLLSANSDCIYRKALDDRLLKQSFRIAAENFKSIDAPTKSVICPYEKGVNLIAILCGEWDPKKFRETLIEAQQFSVALYPSTWKMLLDEGAIHPINDTGIYYLDEKYYDSKLGLNFEGNAQMGEFYI
>NZ_CP021201.1|WP_014840099.1|200933_202580_+|U32-family-peptidase
MKKPELLLPAGGLERMRTAFFFGADAVYAGQPRYSLRARNNEFVRFEKMEQAINEAHALGKKFYVTSNLLPHNSKLRTYLDDLAPIMELKPDALIMADPGLIMKVKERWPDAVIHLSVQANTTNYWGVQFWQRMGISRIILSRELSLDEIEEIRQECPDMELEVFVHGALCIAYSGRCLLSGYFNQRDPNQGTCTNSCRWDYKVLPTVESDAGDARLAPGAERFGFGGGMSLDSGYGSGLEPGGGFGATDGTAFGRGSTGGVAGGLVAGSDSTGSVGSSESRNLTGSYSSNEFRVPYTGLEGFDFNAMREEADQQFASVGGAPRHPLAENVYLLEEGNRKGQYMPIMEDEHGTYIMNSKDLRAIEQVERLVKIGVDSLKVEGRTKSMYYVGRVANAYRRAIDDAVAGRPFNPELLADLQNIANRGYTPGFLERHQTQDYQNYLHGYSVSRLSQFAGVVLDVDDDGWATVEVKNRFRVGDKIEIIHPSGNAVVVLEAMEIDGEPTDLAPGNGREARIPNMHGKKGALLARLLSEGERERLVKLTGVSGE
>NZ_CP021201.1|WP_095686513.1|200128_200641_+|ATP-binding-protein
MQEGALPELFNLSSHEMKHNYVSSLKDTILLRDIVARYKVKDIKLLEDLFVYLVNTTSSLVSITNIVNFFASKKRKANYETLSSYINYFDNAFLIHRAECYSIKGKDTISGNCKYYLNDLSYRNYLYVAYDYVVGHLLENAVYLSLRRAGFRVYVGSIKDKEINFVCMRS
>NZ_CP021201.1|WP_044962102.1|199280_200006_+|fumarylacetoacetate-hydrolase-family-protein
MSEIKTVLPLPKPATIAIYGRKERFPVGRIFCIGRNYQEHAAEMSYGAVDKSQTDPIFFIKSACHVAHFESGEVGKLPYTKGTQNLHHEVELVLAFGNDIADGASKEEIQDAIYGYCVGLDMTRRDFQSISKKNGFPWDGAKDFEDSVILGELTEKSSLANPWMDDVGIKLSVNDEIRQDGDTSDLIWKIDECVSYLSKFYNLRAGDLIMTGTPSGVGPVVRGDVLKGQIAGLQDLVVEYI
>NZ_CP021201.1|WP_013521988.1|197230_199273_+|primosomal-protein-N'
MAKSWARIALDVPLFSFFDYIIPSGMKVERGQRVIVDFGKKELIGVVVNILSSCEIPEDKQKPLKEVIDDLPPFSEKWLKLCEFAANYYIRPVGEVILPVIAPPLRNINSYRGKTKTSPVERLDKRKIKIDSEYSQNTAPELNDDQLAAANYIKSIKGYETVVLHGITGSGKTEVYLNVAEHILSTGKQVLFLVPEINLTPQFEQLIRHRFSALYGQDAVVTMHSGLSDGQRLKSWVRMCRQEAKILVGTRMSIFSPFENIGLIIVDEEHDASYKQQDGLRYSARDLAIWRANQLEVPVVLGSATPSLETWRNMQTGRYKLLSLKKRASSGNPPQIHILNTKKLKSINGIAQPLFDLISKKLSDGEQVMIYLNRRGFAPVLRCGSCGWVSTCPNCSVHTVMHRNIKRDLNILQCHHCGFRSHVPLCCPDCGEVDLSALGYGTQKIEEGLINHFPDAKILRIDADSTRLKGSAERLFTQATEGHVDIIIGTQMLAKGHDFKKLSLVAVLNSDLMLYNADFRSSERLFSQLLQVAGRAGRHIKDAKVVVQTEFDRHPVYDALIAQDYEQFSQSALEERKSATLPPYSYQILFTAQSKKILNALEFLEQVASIGANAKYEDVRIYDPVPLQIVRVANVERAQLLFESQSRTRLHSLVYEILPHIDNIKSSKISYHIEVDPLTI
>NZ_CP021201.1|WP_013521987.1|195931_197002_+|uroporphyrinogen-decarboxylase
MNDTFLRALLRQKCEYTPIWLMRQAGRYLPEYRATREKAGSFLGLAKSPEFACEVTLQPIDRFNLDAAILFSDILMVPDAMGLGLDFVAGEGPKFANPIRDEEDVKNLKVPDMNELRYVFDAVKLIRGQLQDRVPLIGFAGSPWTIACYMIEGCGSKEYRQIKSMMYSRPELLHSVLEICAQSTAQYLIEQVKAGAQAIMIFDSWGGVLAHGYYKEFSLKYMKSVLDTLRGFLNSNEHKGVTVPVIAFTKGGGLWLEDMVDAGFDALGLDWTVGLSDARRRVQDRVALQGNLDPMALFSDEKSVRAQARNVIDDFGPVASGGHVFNLGHGISQFTNPDIVEALVDEVHNYSKSKHL
>NZ_CP021201.1|WP_013521986.1|194864_195887_+|helix-turn-helix-domain-containing-protein
MRETLDCAVLYTDHFKAQAASLVNLTDKTKRVQFKEFNLGDLTNSNLPSYVVNDYELPHPNTLRELGPLLHRYDVVILPVNQKVLIWLRVMLSNCPDFPTPVMILCDDVHPTALPDLAKLGVVDFISFEDSTPIIMARIKSAIERYSYFRQREIISINRLMAEVDDQNREPKYTSASIREGLAARKNALKELEYTESVGSYTLYNFSDSSSSLNYEKSLIGQPSSIETRKISFVPPFSHLELDDADVKPPLRKSPKRKIITANITTVESTPSEQESIKDDDSFKDAKDKIVSAFEKEFIINALIQSKGNIAQAAKRSGKNRRSFWELMRKHEISAKQFRH
>NZ_CP021201.1|WP_014840094.1|194008_194494_-|RNA-polymerase-binding-protein-DksA
MELPIMAKAVKSPKTTNKSKSNSGSEVILTEEQIKQMSEDEYMNDLQLAFFKDRLKKLESDILNNAGVTTENLRETQFVPDPADRATIEEEHTLELRTRDRERKLLKKVQNSLQLIESKEYGWCEETGEPIGIPRLLARPTATLSLEAQERREKRQKLYND
>NZ_CP021201.1|WP_013521984.1|192599_193940_+|esterase-like-activity-of-phytase-family-protein
MKKIALLLSLAFASGAYAAEQYPATLAGHAVLPAATFIDPPADAPDYFKISARYKNDKYNRVDEAESMDGFNGPRKTGIKKPFNGQPVQGHSGIKIMKDGTFWLISDNGFGNKLNSPDAMLFLNQYKVDFESGKFEPLKTVFFKDPNKVIPFHITQEATKERYLSGMDLDPESFQPIGEHFWVGEEFGPYLLELDADGTVLSIFETEVDGKKIISPDHYSINLPGKPDGKMPMYQSSRSKGFEGMAASPDQSKLYPLLEGALYDHDKKEYENTDGKNYLRILEFDTQAKKWTGKSWKYHLEDNGNAIGDFNMIDDTYGMIIERDNSEGSADKLCPQGQKGDNCFETSAKFKRIYKVKLDPNSDVAEKIGFIDLMAIEDPNKVARKPLVDGKFTFPFFTIEDVDVLDQDHIIVGNDNNLPGSASRDPNKADDNELIKLKVTEFLQAK
>NZ_CP021201.1|WP_013521983.1|191902_192469_-|ATP-dependent-protease-subunit-HslV
MEQFHATTILCVRKGDEVAIGGDGQVTLGNVVIKGSARKIRKLYHDKVLSGFAGATADAFTLQERFEAKLEKHQGHLLRAAVELTKDWRTDRVLRRLEAMLIVADKDHTLVLTGNGDVLEPELGVAAIGSGGSYAQSAAQALLQNTDLTPEEIVKKSLEIAGDLCIYTNQNHVIQKLDIDESKNKKES
>NZ_CP021201.1|WP_095686514.1|205910_206204_-|CRISPR-associated-endonuclease-Cas2
MLVLITYDVDMKDNSGAKRMRKISNACQNFGLRVQYSVFECDIDPEKWIKLKSTLLDLYDPEKDSLRFYNLGSKWRGKVEHHGAKPSIDIFKDPLIL
>NZ_CP021201.1|WP_044953912.1|206206_207220_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MKKLTNSIYVTSQGSYLHKERDTIVLEVDKKKVAQIPIHSIGQIFCFGNVLISPFLVGFCGEKNVLLCLYTEHGRFLGRYVGKQNGNVLLRKNQYRMADNCPLPIAKNIIAAKIQSSKRVLQRFIRNHTNNSEIESTIGSLTFILNNIKNITSKQSLLGLEGDAASRYFSVFDTLILKPSNFRFNGRFKRPPTDPVNAILSFLYSVLSNDITSALQGVGLDPQVGFLHSDRSGRSSLSLDILEELRAWLVDRLVLTMINLKQIDINGFEVELSGAIRMKDDLRKKILSIYQSKKQELIIHPYINEKIPIGLIPHIQSQLLARHIRGELQEYPPFLMR
>NZ_CP021201.1|WP_044962106.1|207203_207833_-|CRISPR-associated-protein-Cas4
MVDKPYFQLSALQHYAFCKRQAYLIYVEGLWAENYLTASGDLIHSKVDSGVSDSRNNIKQVRNIQIVSHKYQMSGLIDLIEYSDMNHITIIEYKRGKPKPNEMDEVQVCAQALCLEEMLGVVLSYGYIWYDLNKARHKVCFTDELRDITISLINEVKILFDSPKAPNPVLCSSCKSCSIYDTCLPNIISLDKTKEYIDNLYDSSYEEID
>NZ_CP021201.1|WP_014840104.1|207822_208671_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MTLENKIDFALIIKVKNANPNGDPLNGNRPRVNFDGLGEISDVCLKRKIRNRILALKGNEEGFKIFVQSDDNNVDGITTLEKRAEDEEHGLGKRGFNDRNTAYENACKKWYDVRAFGQVFAIKKKAGESEGVSIGIRGPVTIQPAFSVDPVNITSTQITKSVSGSGDGKKKSSDTMGMKHRIDEAVYVSFGSISPQLAEKTGFSNDDADILKNAMLSMFEGDASSARPEGSMEILKLIWWKHDSKLGKHSSAKVHQSLEVNSDGSFNINDLSELKPEILDGR
>NZ_CP021201.1|WP_014840105.1|208683_210576_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MSWISSLVEAYDFIDQDIKSNINESKKIEPLTPILHNKQKVDLIVTIDIDGNFKSVESISSESKNNSYLIPVTPQSDSRTSGTEPHPLADNLGYVAGDLKDYFSTPKEVNKFEEKNSKYLELIGQWSKTESYKVLQAINKYVNKKSLIKDLLNNNVLAISEEQKLIYSLTEKGDVDKLFVVWSVIDSAGNSYQSWSDENLISSWIDFCSTKLDNKFCFYYGENKTYSTSYSCKISNAGDREKIISSNDSKGFTYRGRAIEAHEAATISVEASYKLHAMLRWLKERGQSFTYDNIEIISWANLNLKPIVLPTLEIEEPSNPFDDEETNSEPDWTSSYGFQASKKLKEKLAGFSNNLSDSDKISIIIFKSASPGRRSILYFREMLKDDYLRNINKWIEDLSWTFSIKGEAYEFSPSPWIIVNELYGNESTTLKTSILSNLIPIQINNLQIPWDLVSKAFHNACNPLKYDNFKRRKNISLACSIYKGYSIRNLNKEVEMSLNLTNKSRDYLYGRLLAVAQAVEDSVIKDIEPGSKRDTSAERYFQRFSTRPYTTWKVIYDSLKIYSKRYRFGNPDIIIGEIMELFDEESYKNDKALSPEFLLGYHCQLNEIYKRKGSDTHSETTVATEESTLN
>NZ_CP021201.1|WP_014840106.1|210578_211295_-|type-I-C-CRISPR-associated-protein-Cas5
MESNYLSFKVWGREALFTDPLTKLGGEKFTYQVPTYEAIKGIVKSIYWKPTFIWHIDKIRIINPIKMASKSMKPRKWNVDENSLSYYTYLTNVEYQVLAHFTWNENWVELEKDRNTEKHSSIAKRMLERGGRQDIFLGSRECQGYVEPCEFNSGNGFYDDADLTFGNMFHSYGYPEETGENKLINRFWSAEMKKGIISFPEINDPKLKLNFIREMRPTKCFGEESINNTNNLYSEKEE
>NZ_CP021201.1|WP_095686515.1|212108_215018_+|ATP-binding-protein
MSSKNKILDSWILVEQLSEGEIKPKDYSILSNLDSANYFNSFKKEINKIQGKNPIFALLLNFITFEELNKILKLEPSEEAYKFDNKFSLALCFDKELKLMPEEIFVTVSSYIKNKNAIPSLGEFEDYENKLKEFISSLFLTENIVNYEEVFNEDINKLFHKFKVDTDKSGFKTYPSIEGANTNLHSFFIKDLQKAKDLSTRNLDDYLIDNLDARLRQRVNLATRVESDDFDEKTLNTFLEILQPKNYPISRFPSSPKYALSLMQQVAVNLSVHDDSNTIRSVNGPPGTGKTTLLKDIFAHLVVEQAKEICSLSNKKIEGSETTKYSDTKSIGVLPKQISDRGIVVASSNNGAVKNIVDELPKIESIADEFKDAILHVDYFKDIANLRENSDNDQSEIINSKSGNNWGLFSKEGGKKANINQILSALDGVIKDLKNNPNPNSNAYEEFRKYLKEISEFIVKKQQEFEHLKKQKFFSKDILKQFHNEGIKLKNPDSIVNNAMACKTELEKVRKNIAKERETFSLKNLPQPKWYDFWSNERKELNNLKSEHNKKLEPLQKQKQELLARFNYLKQVHKIASVANKNILDFTDDYDSLHLSNPWFDAKFREMQSNLFISALKVRKQFLLENVDNLEAAHNIWKEQLYKPNSKFLNDVVITQAWNWINLTIPVISTTFASVSTMFKNLDNEVIGNLFIDEAGQALPQASVGAIFRSKKVLAVGDPAQIKPVLTLDPVILEKIREKYNAGKLDIPETYLSENSSTQTLIDRISKYGFRKNGEDDNWIGIPLWVHRRCKSLMFEISNQVSYDGNMVQGKTDDKPGIAEWYDVTGSADDKYVMEQGKFLVEKLKELEGNKDFFVISPFKNVAQKLIERLNSEGLVRRDKNGKVTNIGTVHTFQGKEAPVVFLVLGADERSKGAANWSMGSNHPNIMNVAATRAKEEFYIIGNKKLYQGLESRVVDTAIEEIEKFNNRK
>NZ_CP021201.1|WP_013522000.1|215258_216893_+|peptide-ABC-transporter-substrate-binding-protein
MNFKKSLLSIAVAGIATLGVAQAANVPAGTELAPKQELIWNNGANPASFDPHKIEGVPEGNVARQVFEGLVTSDEKGQLRPGVAVSWEHSDDFKTWTFHLRKDAKWSNGDPVTAHDFVYAWQRLVDPKTASPYASYVEFLKLKNAKDILGGKKPITDLGVEAKDDYTLVLNLDESVGFADKLSEHYVLYPVNKKVVEKFGDKWTAPENFVGNGAFKIESFTVNDKTVLTRNENYWDNKNTVLDKITLLAIENSATDVQRYRAGDEDITNSSLPVELFSKLKKELPEELKVNPTLCTYTYEFNNEKAPFNDVRVRKALSYAIDRDIITTKILQAGQKSAYGFTPPYIGGGDKLTKPEWASWDAKKRYVEAEKLLSEAGYSKSKPLNFTILYNTNDNHKKLAVAVGSMLNKNLGGAVNVKLENQEWKTYLDNRKAGKFDVARAGWCADYNEATTFLTYFLSDSSNNKAFYKSAEYDGLVNGSYSAKDDVARSEAYAKAEAVLNKDTPFAPVYYYVDPQLVKPWVQGFAYSHPAKNYYLKDVYIIKH
>NZ_CP021201.1|WP_013522001.1|216954_217875_+|oligopeptide-ABC-transporter-permease-OppB
MIKFIFRRILEAIPTLFVLITVSFFLMRLAPGSPFTSEKDYPPEVMANINAKYGLDKPLLVQYGNYLNDLAHGDFGPSFKYKDHSVNELVAKAFPVSLKLGILAFIIAKLIGITAGILAALKQNKWLDYFIMTFSMTGVVLPNFVIAPLLVLFFAIFWKLLPSGGWNGGAPLYMILPIFALTVSTIAGTARIMRGSMIEVLHSNYIRTAKAKGLPMRHIIIKHALRPALLPVISYLGPSFVAIITGSMVIESIFSIPGIGQLFVQGAINRDYSLVMSLTILVGTLTITFNAVVDILYAFIDPKLRY
>NZ_CP021201.1|WP_013522002.1|217884_218802_+|oligopeptide-ABC-transporter-permease-OppC
MITQKNKEFVQDLASNLESTEFVKGRSLWQDARRRFFRNRAALISLVILVLITCFVIFAPMLIPFDYADTDWAMMSMAPDFESKHYFGTDSSGRDLLVRVAVGGRISLMVGVAGALIAVIVGTLYGAIAGFVGGIVDSLMMRFLEILYSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDMARIVRGQTLSLKKKEFIEAAIVSGVSKRKIIWNHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLNDGAISMEVSPWLLIFPSIFIVVTLFCFNFIGDGLRDALDPKDR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP021201_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021201_3

690407-690506

Orphan

Consensus_repeat	Method
AAATGATACGTAAACGTTTCCGTTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP021201_3

>merge|NZ_CP021201|3|690407-690506|CRISPRCasFinder
AAATGATACGTAAACGTTTCCGTTGCTGTTTTTCGTATCATTTGCAATGAAAAAAATATGATTTTGCAACGCAAAAATGTTACGTAAACGTTTCCGTTGC

>NZ_CP021201|3|3|690407-690506|CRISPRCasFinder
AAATGATACGTAAACGTTTCCGTTGC	TGTTTTTCGTATCATTTGCAATGAAAAAAATATGATTTTGCAACGCAA
AAATGTTACGTAAACGTTTCCGTTGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021201.1\|WP_014840304.1\|679721_680891_-\|serine-hydrolase	unknown	unknown	gnl\|CDD\|236952
NZ_CP021201.1\|WP_013522429.1\|678586_679045_-\|GatB/YqeY-domain-containing-protein	unknown	unknown	gnl\|CDD\|370480
NZ_CP021201.1\|WP_095686579.1\|699372_700869_+\|AbgT-family-transporter	unknown	unknown	gnl\|CDD\|225525
NZ_CP021201.1\|WP_013522426.1\|676114_676456_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021201.1\|WP_192867797.1\|696019_696160_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021201.1\|WP_014840309.1\|692758_693229_-\|sel1-repeat-family-protein	unknown	unknown	gnl\|CDD\|276807
NZ_CP021201.1\|WP_054393669.1\|679097_679721_+\|esterase	unknown	unknown	gnl\|CDD\|183144
NZ_CP021201.1\|WP_095686573.1\|676566_678426_+\|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl\|CDD\|182930
NZ_CP021201.1\|WP_095686577.1\|691500_692634_+\|TAXI-family-TRAP-transporter-solute-binding-subunit	unknown	unknown	gnl\|CDD\|270285
NZ_CP021201.1\|WP_192867803.1\|700953_702582_+\|oligopeptide-ABC-transporter-substrate-binding-protein-OppA	unknown	unknown	gnl\|CDD\|185059
NZ_CP021201.1\|WP_095686574.1\|681072_685071_+\|phosphoribosylformylglycinamidine-synthase	unknown	unknown	gnl\|CDD\|235394
NZ_CP021201.1\|WP_095686576.1\|690536_691439_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|225420
NZ_CP021201.1\|WP_014840306.1\|686630_687884_-\|NnrS-family-protein	unknown	unknown	gnl\|CDD\|377571
NZ_CP021201.1\|WP_095686575.1\|685106_686567_+\|IMP-dehydrogenase	unknown	unknown	gnl\|CDD\|235507
NZ_CP021201.1\|WP_192867798.1\|697346_698828_-\|sodium:solute-symporter-family-protein	unknown	unknown	gnl\|CDD\|271357
NZ_CP021201.1\|WP_015555361.1\|702636_703158_+\|isochorismatase-family-protein	unknown	unknown	gnl\|CDD\|238245
NZ_CP021201.1\|WP_013522448.1\|703292_704483_+\|aromatic-acid/H+-symport-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340923
NZ_CP021201.1\|WP_014840310.1\|693659_693953_+\|nucleotide-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|212144
NZ_CP021201.1\|WP_013522437.1\|690066_690219_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021201.1\|WP_013522435.1\|688058_689657_+\|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl\|CDD\|234614

Protein	Function_ID	Function_description	E-value
NZ_CP021201.1\|WP_014840304.1\|679721_680891_-\|serine-hydrolase	gnl\|CDD\|236952	PRK11669, pbpG, D-alanyl-D-alanine endopeptidase; Provisional.	1.78518e-89
NZ_CP021201.1\|WP_013522429.1\|678586_679045_-\|GatB/YqeY-domain-containing-protein	gnl\|CDD\|370480	pfam09424, YqeY, Yqey-like protein. The function of this domain found in the YqeY protein is uncertain.	7.75075e-52
NZ_CP021201.1\|WP_095686579.1\|699372_700869_+\|AbgT-family-transporter	gnl\|CDD\|225525	COG2978, AbgT, Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism].	3.25847e-174
NZ_CP021201.1\|WP_013522448.1\|703292_704483_+\|aromatic-acid/H+-symport-family-MFS-transporter	gnl\|CDD\|340923	cd17365, MFS_PcaK_like, 4-hydroxybenzoate transporter PcaK and similar transporters of the Major Facilitator Superfamily. This aromatic acid:H(+) symporter subfamily includes Acinetobacter sp. 4-hydroxybenzoate transporter PcaK, Pseudomonas putida gallate transporter (GalT), Corynebacterium glutamicum gentisate transporter (GenK), Nocardioides sp. 1-hydroxy-2-naphthoate transporter (PhdT), Escherichia coli 3-(3-hydroxy-phenyl)propionate (3HPP) transporter (MhpT), and similar proteins. These transporters are involved in the uptake across the cytoplasmic membrane of specific aromatic compounds such as 4-hydroxybenzoate, gallate, gentisate (2,5-dihydroxybenzoate), 1-hydroxy-2-naphthoate, and 3HPP, respectively. The PcaK-like aromatic acid:H(+) symporter subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.90915e-107
NZ_CP021201.1\|WP_054393669.1\|679097_679721_+\|esterase	gnl\|CDD\|183144	PRK11460, PRK11460, putative hydrolase; Provisional.	8.8345e-17
NZ_CP021201.1\|WP_014840309.1\|692758_693229_-\|sel1-repeat-family-protein	gnl\|CDD\|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	1.45482e-40
NZ_CP021201.1\|WP_095686577.1\|691500_692634_+\|TAXI-family-TRAP-transporter-solute-binding-subunit	gnl\|CDD\|270285	cd13567, PBP2_TtGluBP, Substrate binding domain of Thermus thermophilus GluBP (TtGluBP) of TAXI family of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold. This subgroup includes TtGluBP of TAXI-TRAP family and closely related proteins. TRAP transporters are comprised of an SBP (substrate-binding protein) and two unequally sized integral membrane components. Although TtGluBP is predicted to be an L-glutamate and/or an L-glutamine-binding protein, the substrate spectrum of TAXI proteins remains to be defined. A sequence-homology search also shows that TtGluBP shares low sequence homology with putative immunogenic proteins of uncharacterized function.	2.56902e-111
NZ_CP021201.1\|WP_192867803.1\|700953_702582_+\|oligopeptide-ABC-transporter-substrate-binding-protein-OppA	gnl\|CDD\|185059	PRK15104, PRK15104, oligopeptide ABC transporter substrate-binding protein OppA; Provisional.	0
NZ_CP021201.1\|WP_095686574.1\|681072_685071_+\|phosphoribosylformylglycinamidine-synthase	gnl\|CDD\|235394	PRK05297, PRK05297, phosphoribosylformylglycinamidine synthase; Provisional.	0
NZ_CP021201.1\|WP_095686573.1\|676566_678426_+\|UvrD-helicase-domain-containing-protein	gnl\|CDD\|182930	PRK11054, helD, DNA helicase IV; Provisional.	1.014e-74
NZ_CP021201.1\|WP_014840306.1\|686630_687884_-\|NnrS-family-protein	gnl\|CDD\|377571	pfam05940, NnrS, NnrS protein. This family consists of several bacterial NnrS like proteins. NnrS is a putative heme-Cu protein (NnrS) and a member of the short-chain dehydrogenase family. Expression of nnrS is dependent on the transcriptional regulator NnrR, which also regulates expression of genes required for the reduction of nitrite to nitrous oxide, including nirK and nor. NnrS is a haem- and copper-containing membrane protein. Genes encoding putative orthologues of NnrS are sometimes but not always found in bacteria encoding nitrite and/or nitric oxide reductase.	1.64715e-80
NZ_CP021201.1\|WP_095686575.1\|685106_686567_+\|IMP-dehydrogenase	gnl\|CDD\|235507	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed.	0
NZ_CP021201.1\|WP_192867798.1\|697346_698828_-\|sodium:solute-symporter-family-protein	gnl\|CDD\|271357	cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose transporters and related proteins; solute-binding domain. This family represents the solute-binding domain of SLC5 proteins (also called the sodium/glucose cotransporter family or solute sodium symporter family) that co-transport Na+ with sugars, amino acids, inorganic ions or vitamins. Family members include: the human glucose (SGLT1, 2, 4, 5), chiro-inositol (SGLT5), myo-inositol (SMIT), choline (CHT), iodide (NIS), multivitamin (SMVT), and monocarboxylate (SMCT) cotransporters, as well as Vibrio parahaemolyticus glucose/galactose (vSGLT), and Escherichia coli proline (PutP) and pantothenate (PutF) cotransporters. Vibrio parahaemolyticus Na(+)/galactose cotransporter (vSGLT) has 13 transmembrane helices (TMs): TM-1, an inverted topology repeat: TMs1-5 and TMs6-10, and TMs 11-12 (TMs numbered to conform to the solute carrier 6 family Aquifex aeolicus LeuT). One member of this family, human SGLT3, has been characterized as a glucose sensor and not a transporter. Members of this family are important in human physiology and disease.	1.59958e-79
NZ_CP021201.1\|WP_015555361.1\|702636_703158_+\|isochorismatase-family-protein	gnl\|CDD\|238245	cd00431, cysteine_hydrolases, Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.	1.84179e-18
NZ_CP021201.1\|WP_014840310.1\|693659_693953_+\|nucleotide-pyrophosphohydrolase	gnl\|CDD\|212144	cd11537, NTP-PPase_RS21-C6_like, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) MazG-like domain found in mouse RS21-C6 protein and its homologs. RS21-C6 proteins, highly expressed in all vertebrate genomes and green plants, act as house-cleaning enzymes, removing 5-methyl dCTP (m5dCTP) in order to prevent gene silencing. They show significant sequence similarity to the dimeric 2-deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTP pyrophosphatase or dUTPase) and NTP-PPase MazG proteins. However, unlike typical tandem-domain MazG proteins, RS21-C6 contains a single MazG-like domain and functions as a tetramer (a dimer of dimers) with a typical four-helical bundle. Divalent ions, such as Mg2+, are required for its pyrophosphatase activity. This family also includes a pyrophosphatase from Archaeoglobus fulgidus (Af1178). Although its biological role remains unclear, Af1178 shows significant sequence similarity to the mouse RS21-C6 protein.	4.72672e-34
NZ_CP021201.1\|WP_013522435.1\|688058_689657_+\|glutamine-hydrolyzing-GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
NZ_CP021201.1\|WP_095686576.1\|690536_691439_+\|transcriptional-regulator	gnl\|CDD\|225420	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription].	4.4216e-31

>NZ_CP021201.1|WP_013522437.1|690066_690219_-|hypothetical-protein
MLKLGILKAVPPKRKGYTKVALNEGVDAHLGEYFGDFVFDICAGKPYKEN
>NZ_CP021201.1|WP_013522435.1|688058_689657_+|glutamine-hydrolyzing-GMP-synthase
MHQKILILDFGSQVTQLIARRVRETGVYCEIHAGDVSAEFLREEQAKGLKGIILSGSHSSVYGEESDKVSDEVFNLGVPVLGICYGMQLMATQLGGRVTWASHREFGHAEIELHGHSQWFEGLKDGEVAGDKSRPTLHVWMSHGDQVEIMPAGFVCIASTGSCPIAAMADESRGFYAVQFHPEVTHTKQGAELLRRFVCDICGCEGDWNMPDYIDEAVAYIKKTVGEDEVILGLSGGVDSSVAAALIHRAIGDKLTCVFVDHGLLREHEGDQVMQALNENLGVKIIRVDATNQFLGKLEGVSDPEQKRKIIGREFVEVFQAEAAKLPNAKWLAQGTIYPDVIESAGSKTGKAVTIKSHHNVGGLPETLNLKLLEPLRELFKDEVRKLGLALGIPQSLIFRHPFPGPGLGVRILGEIKPEYVGLLQKADTIFMQELHNFIDEETGKSWYDLTSQAFTVFLPVKSVGVMGDGRTYDYVVALRAVQTSDFMTADWAPLPYALLAKVSSRIINEVRGINRVTYDISSKPPSTIEWE
>NZ_CP021201.1|WP_014840306.1|686630_687884_-|NnrS-family-protein
MLINIQNTSESQSDKPSLKALFSLGFRPLYLSAAIWTIVSIILWIYVPASLKGPMTASYWHAHEMLWGFVITIAVAFLLTASATWTGRTPAQGSILMYIVLLWWISRILLVVPSIIAFKIGMITEFSFFALSAYRLWSVLWSTKNKRNYILPFVLLILAFLDLGYLYSVLEGDYLGVSRYVDFGFIGMAYIALLIARRVLPFFASRGASIEIPNHQKSGSMQLSLMVITFMASLLDLHIIAALCLIATGIISIYQLLQWKPHKVIHIPLLWVLYISYFFLGVGLIFSGIYFLLSPSYVALIEGWGSQNDLTFMLSKPAFHLHIIGMGGFAVMIIGMITRTSLGHTGQALRADKWMVWMYICVLIAFVIRMAGLYPSNVIIAFWHTAALFWIIAFGLFLYRFTPLLTKPRADRFHPKK
>NZ_CP021201.1|WP_095686575.1|685106_686567_+|IMP-dehydrogenase
MRLTKKALTFDDVLLVPAYSNILPKDTSLKTKLTRNINLNIPIVSAAMDTVTESSLAIAMAQEGGIGIIHKNMTADQQAKEVSRVKRHEFGIVIDPVTVSPQTTVREAIELQKSHGFSGLPVVEDGKLVGIVTNRDLRFEDRYSELIANVMTPKDRLVTMKESQTLEDAQALMHKHRLERVLIVNDNFELRGLATVKDIVKNHEHPVANKDSKGQLRVGAAVGVGAGTEERVEKLVVAGVDVIVVDTAHGHSQGVIDRIKWVKQNYPQIDVIGGNIATATAALALVEAGADGVKVGIGPGSICTTRIVAGVGVPQITAIHDVSSALEGTGVPMIADGGIRYSGDVSKALAAGAHACMMGSMFAGTEEAPGEVILFQGRSYKSYRGMGSLGAMEKGSADRYFQESGSGTEKLVPEGIEGRVPYKGSVLAIIYQLIGGIRASMGYCGCPTIEDMRTKAEFVEITSAGMRESHVHDVQITKESPNYRQG
>NZ_CP021201.1|WP_095686574.1|681072_685071_+|phosphoribosylformylglycinamidine-synthase
MSTHYYIEGSSALSQFQSEKIIEKLKKLNVPVSNLYAQYVHFVFSERELDPSEQHKLKSLLTYGKEFLTDQAQENSLILHVVPRIGTISPWASKSTDIAKNCGLSKVNRIERGIKFYFVCERGLLGLKKLSDTQISSIAQVIHDRMTEQVFEDGFDPQILNNELPPKALNYIDIRTNGENALLEANDSLGLALSKVEIEYLLKSFNEIGRNPTDVELMMFAQANSEHCRHKIFNASWTIDGESKEKSLFSMIRDTHKAHPDGMIVAYSDNAAIFSGHEISRFFPDSDSNFKYKSQNRLTHTLIKVETHNHPTAIAPFQGASTGAGGEIRDEGATGRGGKPKAGLVGFTVSNLHLNDLDEIWEKDSHAMPDRIANPKEIMTQGPIGAANFNNEFGRPNLTGYFRVYEQTVDGVRWGYHKPIMIAGGLGSIDDSLTHKKVFSDGTLLIQLGGPGFRIGMGGGAASSMGVGSNSESLDFDSVQRGNPEIQRRAQEVIDTCWRMLDKNLILSIHDVGAGGLSNAFPEMVHDADMGALFDLNKINLEESGMSPAEVWCNESQERYVLAIAPESLEAFSEICARERCPFSVVGIAKDDKDLRVTDAPNDDAVSLPMDVILGSLPKVHKQVTTLEFTSVPLDYVEASIEDLALKVMRHPTVASKLFLITIGDRSVGGLTARDQMVGPWQVPVADCSVTLDDYEGYSGEAMSMGERSPLAIINPASASRMAITEAITNIASADIKRIEDIKLSANWMASSGSDGQDVALYKAVEACSKFCIDLGLSIPVGKDSLSMKTKVADGGDEQLVISPVSLIVSAFANVDDVRKSLTPQLMQGKEDSSVLILIDLGEGRQRLAGSVLSHVLNQYGDQTPDLDNPELLKAFFNAIRFLSAQNLIQSYHDRSDGGLFATVAEMAFAGHVGVSINVDMLVYDEQSSDFGDYKIRPDQVEIQRNESTIRALFNEEAGAVIQVARANRDKVLNILKDFGLSKVTYVVGSLNSTDTIEILRDAKTVASFERSLLGKEWSKVGYNISKNRENPKTSLAEFKRWDDLKDPGMQPKVDFNPQEDICAPFVGKGSKPSIAVLREQGCNSHIEMAWAFDKAGFQAHDVHMTDLLSGRRKLSDFQAIVAVGGFSYGDVLGAGQGWAKTILFNEILATQFTEFFDSQNTIALGVCNGCQMMAHLAGSGMIKGAEHWPAFTNNVSSKFEARLCMVEVMESPSIFFKGMEGMQAPVVVSHGEGYANFGSQGDKGLVNRALRYVNNVGQPTESYPFNPNGSIDGITGVTSVDGRFMIMMPHPERVTRNAMMSWHPENWGPKDTGGDYSPWMRMFMNARVFFN
>NZ_CP021201.1|WP_014840304.1|679721_680891_-|serine-hydrolase
MIGFLKSAILSFALVFFISSSFNQEVHAATKQKTSKTIKKTTKKTVIYKTSKSTSKAQVARSKSKSSKNSKKSIATKTKTKKSKVVAGTRVKPKTPRKLVSKSSIKPALIATTNLNNSLPNEELKNSLSDVEIVGFADNGDVINSEIALVMSLDDRQIQYQKNINVVQPIASISKLMTAYVVIKSGQPLDEIITISEEDVDHLKGTGSRLTIGTQLTRKEALLLALMSSENRAANALGRHYPGGLEAFVKEMNATARSLGMTRTRYVEPTGLSPMNVSSAQDLATLLAAVYKEPLIHQLSTSDGYSVTTNGGKVQDYKNSNRLIRNNEWDIHISKTGYIKEAGRCIVMITKIKGKDMAVVLMNAKGGTTRFSDAIRVRHIVQNEFPPIF
>NZ_CP021201.1|WP_054393669.1|679097_679721_+|esterase
MFPSKQLLSTPDDLEQPSQLFILGFPDLENLRMMDVVSNAYREVFPQAQIFGIGIPSEEVITETSKIEEYVRNHKVNLIETIRHIQKDTNTDAQFTALVGSGPIGSVNLSLLGLSSPIAGRVITFNSYLPIESVGNNISLDYTAHLIYTETECEFGRERIESDFKFIKDLGADITLDLLGGHEDPIDTSINRLKTCIPLKIINQINQ
>NZ_CP021201.1|WP_013522429.1|678586_679045_-|GatB/YqeY-domain-containing-protein
MSLKSRISSSIKEAMLAKQTDRLSTLRFLSAAIKQKEVDERIELTDDQIVAIIEKQIKQRRESIAAFEQAGRAESAESEKAELAVLSEFLPEQASDEEIQSLVEEVVNQLKAEGVSGNPAMGKAMGILKPKLAGRADMSRVSAIIKDKINQG
>NZ_CP021201.1|WP_095686573.1|676566_678426_+|UvrD-helicase-domain-containing-protein
MNIDQLKNKLTQNQYKAATSNSQNILVLAGAGTGKTSTIIGRVSYLAMHLGIPPEQILMLAFGKDAAKEMQERLESVDALKSVEVRTFHSLGLNIVSKVEKKMPKLTSLSEDQKLEKYIETICTSDSNKLYEYFTFYENDLSVSNSNITIWRSLRDDFFDHPIALITANILFMRGIDYISNCLYEKDIYLIKKYQPYEVAFYLPKYKCYLGIYDTAEQINIHNDFGTKYINLNSIFESLDVFEYSELSQYADKFNRLCSSHHWGKEKIFNINSKGRIKDLSKLLLDVFLFVKSNPDADFTRWQYKKKFLGLWAKEILHKYNEDLTYAQEIDYDRMIVKSTQYVAEKKFTHNWKCILVDEFQDISKSRFELLQELVKQETDIGLFCVGDDWQTIYQFAGSELKYIRNLDQYVQDLEIIPLDRTFRFHNALASISSKFVQKNPNQYKKSIKSLREYDGVCVSLLEYEIDLWYVLNLINKNLSQTKTCLILSRFNYQLPLPTKIDYLNSSFNNLEIKASTIHKSKGREADFVIILNVESGEMGLPSEKESEIELYASEENFPHAQERRVFYVALTRAREHVFIYYSKEKLSLFIEELLLEEKYVKPWNESEVSQLLTDRTGD
>NZ_CP021201.1|WP_013522426.1|676114_676456_-|hypothetical-protein
MRKIYIIALAGFLTACQVGTGIDLSNKENYGLKCSAGPNSQPNWEGCMVSAKRICAPLRVVNVKKLNPVGSGSKDDGYFMTFTCANSNTLPQNQVNNSSNVAPITSATSTPAN
>NZ_CP021201.1|WP_095686576.1|690536_691439_+|transcriptional-regulator
MEGNQFSYEGMPSKDQNLTFNELEKYLIKKLSIEDLDQDILKTLGLLEAKIGFNHAAQLFADKNSFKLVDLVRYGVDINEFKERLPVENESILIAYAKSLEMYRRYYQVERIEGDERQKIELIPENAFREAIANALVHRDWSINSFIKVEMFENYIDILSPGVLPKGISEEEYINGKFSLLRNEKVGTLFYRLGIIEKFGTGIKRIKHQYKGKLKKPIFKVGPNSIYVRLPVLIDDMDDLSKNSSIIYQKMPKSVEMSRDAIEKITGFDKSKVLRGLEQLIADNLVSRVGRGRGVRYIKY
>NZ_CP021201.1|WP_095686577.1|691500_692634_+|TAXI-family-TRAP-transporter-solute-binding-subunit
MNRITKSLLIGLVTIISACSDEKSSTKQKASTESTAQSSGTPTDAQNKLQTKFVTIATGGASGPTNIYATTLANEYARVYGVNSKTQTTGASIENLNLFKLKKVEMAFLMSDTLIEAVEGKRNFSEPIKSIRQIATLYPNFVHIVVRADSDIKEVSDLRGKRVSVGAQNSATEMNTRAILKFFDISYDDIYEDYLGYAESAEALRAGRVDAAFLTTGIPNSSLMDLNQTMPFRLLALPPEKVEEIVKEETYFQKNTIPAGTYGSSPDVPTIAILNAMIVQESLSEDDVYKLTKTFFESLPKLRASHQSIKDVNVMDAQKGHVAPMHPGAKRYYDEVNARGSAEGGDSGGASGGATSYVPGSTPAEVPGSTSSEATRS
>NZ_CP021201.1|WP_014840309.1|692758_693229_-|sel1-repeat-family-protein
MIKKIIFATTIALAFSNLSWAEDLDIATLEQNAAEGDARSQFKLGEAYEFGKGVEKNPEKAFELYSKAANHGYRAAQTNLGFLYDTGTGTKQDFDAAMNWYKAAANQGDLAAMYNIGLLYEAGRGVKKDIDTAKMWYKKACDLDDQDSCNKLKELQ
>NZ_CP021201.1|WP_014840310.1|693659_693953_+|nucleotide-pyrophosphohydrolase
MKNVLDAIDKFNTERNWKKFHSPENLAKSISIEAAELLEIFQWNTKDIDKEHLKEELADVLIYCLDMTLSLNIDPERIILDKLNKNSIKYPLEDVHL
>NZ_CP021201.1|WP_192867797.1|696019_696160_+|hypothetical-protein
MTSLLTGLVNRFEVIATAISSSHDVISESWPRASAVPSNLFILRYM
>NZ_CP021201.1|WP_192867798.1|697346_698828_-|sodium:solute-symporter-family-protein
MIESLINPMPLSFFLIMAVYFLLLAFIGYIAAKQTKDLKEYLIMGGRAGAIVSGVAYFATQYSFSTFMGVPAIAYREGFAGLSISVPGIAFSMIIPALVVGMKILKLSKKNQFLTMTDYLADRFQSNIVRISHALMIVVFLVAVMGAQMVGAGVIFKTFTGFPEWTGVVLTGTIVILYCMFSGMRGAMLTDVLQGLLMVITAIATFIMSIRIGGGLENITKSMLETNSKLLSHPGAEGGYGYGVYVSMILLWSFFSIAQPTLFTKFFTMKNYAVMFKAILLGTIGMFISATLIEWSGVNASISITGLRGNEADFIVPILIQQNFSSIISSILIAGIVSAGMSTVSALMVVATGSITRDIYQNIINPKSTNERILKLSRIITILIGLSGITIGICKPSSIFEIVRFAFGGMGVWAIAVILGMYWKHTTTAGILSGIFVAEIYYIYLKINKLDGTALALGLDSLITSWLLGMAVAITVSLFTKPVNDEVIQRHFE
>NZ_CP021201.1|WP_095686579.1|699372_700869_+|AbgT-family-transporter
MNKFLNFIERTGNKLPHPFFLFVYLSIFVIITTAFMAQMDASAVNPKTNAVVAIKSLLSDSGIQFMFTSMVENFVKFPPLGIIIIAMFGFGLADRVGLLPILIHSIFSCVPKRLLTFTVFVIGISSNIAPDANIILVPLVAMIYHSLGRHPIAGAAAAYGASGAGYDVSVLITTSDIGFAGITTEASRFIDPNFYVSPIDNYFFAVSSVVLLAIIGTILIDKFIEPRLNRTLKIDSNIHITPVIALSDLEKKGLRKTMWAALIYIAIMVAILLPSTSPLRNPDGGLVPSPFLKSFVPILFGFFMTVGITFGRTVGRIKKSADIPALMVDAVKEMAVTLVLFFIIAQFITYFKWSNLGQYIAIQGSIFLEEAGFTGFSMMIAFILMSALLNIFISSGSAQWSLMAPIFVPMLMLVDYHPAFTLAMYKIGDSSTNIISPMSPYFSVCLVYMQRYKKDLGMGSLLSIMLPITIAFLFFWTILILAWVGLGWELGPGILPHL
>NZ_CP021201.1|WP_192867803.1|700953_702582_+|oligopeptide-ABC-transporter-substrate-binding-protein-OppA
MNLKIAFSILSTSFMLTSVAYSAVIPVGTELADKQEITINNGNEPTSIDPHKIEGYPEAEVVYQLFEGLVTKDEEGKAIPGIAESWKSSEDFKTWTFTLREGANWSNDEPVTSYDFEFSFRRLADPKTASPYASYLEYLQIQNAKDVIAARKPVTELGVRAVDDRTLEFTLSSPIPYLVDMMTHFAVLPVNKSFVEKYSDDWVKQKDFPVNGAYALADHVVNEKMVFVRNKKYWNDKETVIEKATFLPIESANTDVLRYRAGDLQITNYQIPPEQFKTLKRELPNELRIVRMLGTYMYQINNSKSPLTDVRIRKALNLSLDRNILTDKVLAQGQTPTYVFTPPYITDGELIKQPEYSKQDMASRNAEAVKLLNEAGYSKSNPLKLTVLYFTNDENKKIAVAVQSIWKKNTDGILDIKLQSQEWKTYLNTLREKKYDIARAGWTADYNQASTFGSYFLSDSSNNTAFYMSEAYDSKFNESYNSSTAKGRAEAYAAAEAQLAEDYGTIPFFNRVNIRLVKPTVGGYTGKDPQDVLFLRNFYIKK
>NZ_CP021201.1|WP_015555361.1|702636_703158_+|isochorismatase-family-protein
MKKLLVVVDFQKDFVDGALGFEGASILEPVIVNKIKEYEAAGYDIVFTLDTHGANYLETMEGKWLPVPHVIKGSEGHQIYGRVRELSKKHTCIEKPAFGSLGLVDYIQEHGFYDEIELCGLVSTICVFCNAIIVKAASPESRIFIDSKATDSFDKEMQVKCYDLLRHNHIEVV
>NZ_CP021201.1|WP_013522448.1|703292_704483_+|aromatic-acid/H+-symport-family-MFS-transporter
MLKLSPIQLRVFLLTFFIAFFDGYDTAAIGYIAPSLLAEWGLAKSALAPVLSAALFGLALGAVSFGPVADRFGRKITLIVSVAIFAIGAIVSSYAGSLRELEILRFITGIGLGAAMPNAVTILSEYAPSEKRSFIVNTMFCGFPLGIAIGGFIAAWLIPNYGWQSTLLFGGVLPLILVFLMTFLLPESHDFMRIREQKDIEVRGVRVVLSPEYIAGSILLWITYFMGLVLFYGVINWMPTLFHEINMSQGTASIVTGLFAIGTLGAIGSGWLMDKWNPARLISILCLLACIGVALIGAVVEQNLWVLIVVILISGVFMNTAQSSLPAYAAGFFPTEGRTTGVSWMLGIGRFGGIAGSFLVAQLVDWDFSVSHIFYVLAIPALIQAICLWLKDMLYR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

229115 : 236976

Synechococcus_phage(28.57%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013522020.1\|229115_230048_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	9.7e-40	38.1
WP_013522021.1\|230044_230518_-	septal ring lytic transglycosylase RlpA family protein	F5B3X9	Synechococcus_phage	2.7e-22	52.0
WP_013522022.1\|230533_231409_-	RNase adapter RapZ	A0A1P8D5W0	Corynebacterium_phage	1.3e-06	31.9
WP_013522023.1\|231418_232354_-	HPr kinase/phosphorylase	NA	NA	NA	NA
WP_013522024.1\|232346_232808_-	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA
WP_013522025.1\|232818_233577_-	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.4e-20	28.6
WP_013522026.1\|233563_234193_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA
WP_013522027.1\|234196_234823_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_014840112.1\|234824_235403_-	HAD hydrolase family protein	A0A222YVZ6	Synechococcus_phage	3.1e-12	34.0
WP_014840113.1\|235413_236391_-	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	7.5e-35	35.3
WP_014840114.1\|236439_236976_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	2.1e-31	45.2

DBSCAN-SWA_2

243674 : 251251

uncultured_marine_virus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_095681270.1\|243674_244151_+	adenylyltransferase/cytidyltransferase family protein	A0A0F7LBI5	uncultured_marine_virus	1.3e-11	36.7
WP_013522038.1\|244147_244831_-	protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.5e-13	32.3
WP_044956205.1\|244860_245670_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_013522040.1\|245765_247028_+	polyphosphate kinase 2	NA	NA	NA	NA
WP_014840120.1\|247131_248499_+	glutathione-disulfide reductase	A0A2K5B2C5	Erysipelothrix_phage	6.8e-42	27.1
WP_013522042.1\|248507_249515_+	asparaginase	NA	NA	NA	NA
WP_014840121.1\|249518_250187_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	3.4e-55	50.5
WP_014840122.1\|250164_250596_+	6-carboxytetrahydropterin synthase QueD	A0A1U9WRB3	Streptococcus_virus	5.9e-24	43.7
WP_013522045.1\|250582_251251_+	7-carboxy-7-deazaguanine synthase QueE	A0A1V0DYC7	Dinoroseobacter_phage	3.8e-14	33.1

DBSCAN-SWA_3

312121 : 323193

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_095686532.1\|312121_313333_+	aminoacetone oxidase family FAD-binding enzyme	A0A2H4PQX1	Staphylococcus_phage	2.4e-06	32.3
WP_095686533.1\|313321_314527_-	cobalamin-independent methionine synthase II family protein	NA	NA	NA	NA
WP_095686534.1\|314640_315720_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA
WP_095686535.1\|315750_316116_+	glycine cleavage system protein GcvH	NA	NA	NA	NA
WP_095686536.1\|316122_319074_+	aminomethyl-transferring glycine dehydrogenase	E3SN07	Prochlorococcus_phage	2.6e-256	49.3
WP_013522106.1\|319075_319870_+	thymidylate synthase	A6M9A2	Geobacillus_virus	9.9e-110	68.2
WP_013522107.1\|319872_320370_+	dihydrofolate reductase	A0A219UQN5	Bacillus_phage	1.8e-32	43.2
WP_013522108.1\|320370_321645_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	M1H3J6	Paramecium_bursaria_Chlorella_virus	1.4e-25	30.1
WP_044962166.1\|321690_323193_-	phosphomannomutase	A0A127AWJ1	Bacillus_phage	1.9e-37	26.0

DBSCAN-SWA_4

986366 : 993212

uncultured_Mediterranean_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013522700.1\|986366_987140_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	4.0e-31	48.0
WP_013522701.1\|987139_987910_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	9.8e-54	42.4
WP_014840417.1\|987975_988563_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_013522703.1\|988546_989581_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	3.8e-93	54.2
WP_095686608.1\|989722_991018_+	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	1.2e-64	37.1
WP_013522705.1\|991014_991611_-	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	4.9e-21	47.5
WP_013522706.1\|991610_993212_-	ABC-F family ATPase	A0A1V0SKJ1	Klosneuvirus	2.7e-58	28.5

DBSCAN-SWA_5

1086862 : 1098754

Bodo_saltans_virus(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014840457.1\|1086862_1087834_-	RluA family pseudouridine synthase	A0A2H4UV25	Bodo_saltans_virus	1.3e-07	31.6
WP_014840458.1\|1087932_1088751_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_095686628.1\|1088803_1090078_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	8.5e-95	44.1
WP_013521239.1\|1090080_1090683_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A2H4J538	uncultured_Caudovirales_phage	3.2e-28	42.3
WP_095686629.1\|1090765_1092970_-	UvrD-helicase domain-containing protein	A7KV33	Bacillus_phage	1.0e-103	36.2
WP_013521241.1\|1092972_1094244_-	RsmB/NOP family class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA
WP_013521242.1\|1094240_1094879_-	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	2.3e-24	35.7
WP_013521243.1\|1094928_1095894_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA
WP_044956167.1\|1095883_1098754_+\|tRNA	isoleucine--tRNA ligase	A0A2I2L3Y0	Orpheovirus	9.9e-75	24.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP021201

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection