CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP022383	Capnocytophaga sputigena strain H4486 chromosome, complete genome	3 crisprs	DEDDh,cas3,cas2,cas9,PD-DExK,WYL,csa3	0	5	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP022383_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022383_1

1573979-1574629

TypeII

Consensus_repeat	Method
GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGTGATTGATAACAAC	CRISPRCasFinder
GTTGTGAATTGCTTTCAAATTTTGTAGTTTTG	CRT
GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGTGATTGATAACAAC	PILER-CR

8 spacers

cas2,cas9

The CRISPR arrays of NZ_CP022383_1

>merge|NZ_CP022383|1|1573979-1574629|CRISPRCasFinder,CRT,PILER-CR
GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGCGATTGATAACAACTTAAAACCTTTGTAAATTTGCAGCGTGTTGTGAATTGCTTTCAAATTTTGTAGTTTTGTGATTGATAACAACCGCTGGCAAGTCCATACAATGCACGGCTACGTTGTGAATTGCTTTCAAATTTTGTAGTTTTGCGATTGATAACAACTTTATAAAGCAGTACAAACCCTTTGCGCTTGTTGTGAATTGCTTTCAAATTTTGTAGTTTTGCGATTGATAACAACCTATGGAAAACACTTACTTTTTTAAAGCCAGTTGTGAATTGCTTTCAAATTTTGTAGTTTTGTGATTGATAACAACGATTTTTGCCTTACTTATGACCAACAAAGAGTTGTGAATTGCTTTCAAATTTTGTAGTTTTGTGATTGATAACAACGACCCATTAGAGACCCACCAGAACCCAAGCGTTGTGAATTGCTTTCAAATTTTGTAGTTTTGTGATTGATAACAACAGATTAGACAATATTCTGCACCATTATATGGTTGTGAATTGCTTTCAAATTTTGTAGTTTTGTGATTGATAACAACATTGCCTTCCAAGGCGTTCATACTCTATGAGGTTGTGAATTGATTTCAAATTTTGTAGTTTTGTGATTGATAACAAC

>NZ_CP022383|1|1|1573979-1574629|CRISPRCasFinder
GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGCGATTGATAACAAC	TTAAAACCTTTGTAAATTTGCAGCGTGTTGTGAATTGCTTTCAAATTTTGTAGTTTTGTGATTGATAACAACCGCTGGCAAGTCCATACAATGCACGGCTAC
GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGCGATTGATAACAAC	TTTATAAAGCAGTACAAACCCTTTGCGCTT
GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGCGATTGATAACAAC	CTATGGAAAACACTTACTTTTTTAAAGCCA
GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGTGATTGATAACAAC	GATTTTTGCCTTACTTATGACCAACAAAGA
GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGTGATTGATAACAAC	GACCCATTAGAGACCCACCAGAACCCAAGC
GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGTGATTGATAACAAC	AGATTAGACAATATTCTGCACCATTATATG
GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGTGATTGATAACAAC	ATTGCCTTCCAAGGCGTTCATACTCTATGAG
GTTGTGAATTGATTTCAAATTTTGTAGTTTTGTGATTGATAACAAC

>NZ_CP022383|1|1|1573979-1574615|CRT
GTTGTGAATTGCTTTCAAATTTTGTAGTTTTG	CGATTGATAACAACTTAAAACCTTTGTAAATTTGCAGCGT
GTTGTGAATTGCTTTCAAATTTTGTAGTTTTG	TGATTGATAACAACCGCTGGCAAGTCCATACAATGCACGGCTAC
GTTGTGAATTGCTTTCAAATTTTGTAGTTTTG	CGATTGATAACAACTTTATAAAGCAGTACAAACCCTTTGCGCTT
GTTGTGAATTGCTTTCAAATTTTGTAGTTTTG	CGATTGATAACAACCTATGGAAAACACTTACTTTTTTAAAGCCA
GTTGTGAATTGCTTTCAAATTTTGTAGTTTTG	TGATTGATAACAACGATTTTTGCCTTACTTATGACCAACAAAGA
GTTGTGAATTGCTTTCAAATTTTGTAGTTTTG	TGATTGATAACAACGACCCATTAGAGACCCACCAGAACCCAAGC
GTTGTGAATTGCTTTCAAATTTTGTAGTTTTG	TGATTGATAACAACAGATTAGACAATATTCTGCACCATTATATG
GTTGTGAATTGCTTTCAAATTTTGTAGTTTTG	TGATTGATAACAACATTGCCTTCCAAGGCGTTCATACTCTATGAG
GTTGTGAATTGATTTCAAATTTTGTAGTTTTG

>NZ_CP022383|1|1|1574203-1574629|PILER-CR
GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGCGATTGATAACAAC	CTATGGAAAACACTTACTTTTTTAAAGCCA
GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGTGATTGATAACAAC	GATTTTTGCCTTACTTATGACCAACAAAGA
GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGTGATTGATAACAAC	GACCCATTAGAGACCCACCAGAACCCAAGC
GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGTGATTGATAACAAC	AGATTAGACAATATTCTGCACCATTATATG
GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGTGATTGATAACAAC	ATTGCCTTCCAAGGCGTTCATACTCTATGAG
GTTGTGAATTGATTTCAAATTTTGTAGTTTTGTGATTGATAACAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022383.1\|WP_095901373.1\|1591082_1593254_-\|reprolysin-family-zinc-metalloprotease	unknown	unknown	gnl\|CDD\|316139
NZ_CP022383.1\|WP_095901375.1\|1595379_1595766_-\|30S-ribosomal-protein-S9	unknown	unknown	gnl\|CDD\|178888
NZ_CP022383.1\|WP_095901361.1\|1567262_1568303_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|224919
NZ_CP022383.1\|WP_002678556.1\|1572298_1572550_-\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	unknown	unknown	gnl\|CDD\|225170
NZ_CP022383.1\|WP_009388479.1\|1573409_1573847_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234827
NZ_CP022383.1\|WP_095901374.1\|1593371_1594334_-\|elongation-factor-Ts	unknown	unknown	gnl\|CDD\|236491
NZ_CP022383.1\|WP_095901370.1\|1575284_1579565_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	cd09643_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|375967
NZ_CP022383.1\|WP_095901372.1\|1588026_1590744_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|366183
NZ_CP022383.1\|WP_095901369.1\|1574745_1575087_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_CP022383.1\|WP_095898360.1\|1568612_1569101_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022383.1\|WP_016478130.1\|1594457_1595183_-\|30S-ribosomal-protein-S2	unknown	unknown	gnl\|CDD\|235396
NZ_CP022383.1\|WP_095901366.1\|1571477_1571726_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022383.1\|WP_002678420.1\|1571848_1572226_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022383.1\|WP_095901364.1\|1570779_1571106_+\|YtxH-domain-containing-protein	unknown	unknown	gnl\|CDD\|378938
NZ_CP022383.1\|WP_095901371.1\|1585422_1587237_-\|DNA-binding-protein	unknown	unknown	unknown
NZ_CP022383.1\|WP_095901363.1\|1569869_1570403_-\|DUF3127-domain-containing-protein	unknown	unknown	gnl\|CDD\|378639
NZ_CP022383.1\|WP_002681881.1\|1595765_1596221_-\|50S-ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703
NZ_CP022383.1\|WP_095901362.1\|1569228_1569867_-\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
NZ_CP022383.1\|WP_002682272.1\|1587288_1587975_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380191
NZ_CP022383.1\|WP_095901365.1\|1571110_1571488_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP022383.1\|WP_095901375.1\|1595379_1595766_-\|30S-ribosomal-protein-S9	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	5.59358e-74
NZ_CP022383.1\|WP_095901361.1\|1567262_1568303_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	gnl\|CDD\|224919	COG2008, GLY1, Threonine aldolase [Amino acid transport and metabolism].	7.25246e-99
NZ_CP022383.1\|WP_002678556.1\|1572298_1572550_-\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	gnl\|CDD\|225170	COG2261, COG2261, Predicted membrane protein [Function unknown].	1.22072e-05
NZ_CP022383.1\|WP_009388479.1\|1573409_1573847_+\|hypothetical-protein	gnl\|CDD\|234827	PRK00733, hppA, membrane-bound proton-translocating pyrophosphatase; Validated.	0.00159883
NZ_CP022383.1\|WP_095901370.1\|1575284_1579565_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|375967	pfam18541, RuvC_III, RuvC endonuclease subdomain 3. Cas9 proteins are abundant across the bacterial kingdom, but vary widely in both sequence and size. All known Cas9 enzymes contain an HNH domain that cleaves the DNA strand complementary to the guide RNA sequence (target strand), and a RuvC nuclease domain required for cleaving the noncomplementary strand (non-target strand), yielding double-strand DNA breaks (DSBs). The crystal structures of type II-A and II-C Cas9 proteins highlight the features in Cas9 enzymes that support their function as RNA-guided endonucleases. Cas9 enzymes adopt a bilobed architecture composed of a nuclease lobe containing juxtaposed RuvC and HNH nuclease domains and a variable alpha-helical lobe likely to be involved in nucleic acid binding. The RuvC domain forms the structural core of the nuclease lobe, a six-stranded beta sheet surrounded by four alpha helices, with all three conserved subdomains (I, II, III) contributing catalytic residues to the active site.	3.52238e-58
NZ_CP022383.1\|WP_095901372.1\|1588026_1590744_-\|TonB-dependent-receptor	gnl\|CDD\|366183	pfam00593, TonB_dep_Rec, TonB dependent receptor. This model now only covers the conserved part of the barrel structure.	3.69888e-11
NZ_CP022383.1\|WP_016478130.1\|1594457_1595183_-\|30S-ribosomal-protein-S2	gnl\|CDD\|235396	PRK05299, rpsB, 30S ribosomal protein S2; Provisional.	2.27402e-136
NZ_CP022383.1\|WP_095901369.1\|1574745_1575087_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.23429e-24
NZ_CP022383.1\|WP_095901373.1\|1591082_1593254_-\|reprolysin-family-zinc-metalloprotease	gnl\|CDD\|316139	pfam13583, Reprolysin_4, Metallo-peptidase family M12B Reprolysin-like. This zinc-binding metallo-peptidase has the characteristic binding motif HExxGHxxGxxH of Reprolysin-like peptidases of family M12B.	9.25035e-20
NZ_CP022383.1\|WP_095901364.1\|1570779_1571106_+\|YtxH-domain-containing-protein	gnl\|CDD\|378938	pfam12732, YtxH, YtxH-like protein. This family of proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved. Proteins is this family are functionally uncharacterized.	3.75831e-13
NZ_CP022383.1\|WP_095901374.1\|1593371_1594334_-\|elongation-factor-Ts	gnl\|CDD\|236491	PRK09377, tsf, elongation factor Ts; Provisional.	2.39029e-103
NZ_CP022383.1\|WP_095901363.1\|1569869_1570403_-\|DUF3127-domain-containing-protein	gnl\|CDD\|378639	pfam11325, DUF3127, Domain of unknown function (DUF3127). This bacterial family of proteins has no known function. However, it does show distant similarity to pfam00436, with proteins such as Prevotella buccalis HMPREF0650_0099 being similar to both families. This suggests that this family may have a DNA-binding function.	8.77214e-37
NZ_CP022383.1\|WP_002681881.1\|1595765_1596221_-\|50S-ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	8.90706e-93
NZ_CP022383.1\|WP_095901362.1\|1569228_1569867_-\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	4.07093e-120
NZ_CP022383.1\|WP_002682272.1\|1587288_1587975_-\|hypothetical-protein	gnl\|CDD\|380191	NF033187, internalin_J, class 1 internalin InlJ. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface-anchored proteins with an N-terminal signal peptide, leucine-rich repeats, and a C-terminal LPXTG processing and cell surface anchoring site. See PMID:17764999 for a general discussion of internalins. Members of this family are internalin J (InlJ).	2.80085e-06

>NZ_CP022383.1|WP_009388479.1|1573409_1573847_+|hypothetical-protein
MKKSVQIFLELISAIALYLFINSIAYGDHLVTLPLYLTGVVIMSYLFVRERPQECLQSALRIVLPFTGLMLIAGSLPDAHFSLALIYIVSTGAAFLLGMLIATVSKTYQKIGLSALTFLLVVAVRLSFSAEFQYLIGVHWYTLGS
>NZ_CP022383.1|WP_002678556.1|1572298_1572550_-|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein
MGIIATLIIGAIAGWLGGTIYKGSGLGLIGNIIIGILGSGVGYWLLGNVFHISLGEGWIGAILTGAIGAIVILFLINLVFKKK
>NZ_CP022383.1|WP_002678420.1|1571848_1572226_+|hypothetical-protein
MKKIIALVSVICLSLVAFSCSKNDDPADNDLFVGTYKGSISYLNGQEKKAFDNGSVTVVKTGNDYYFRFSDGIEDLKGVSFKKEGDNTLINVDLQDGLKVIRINASSLYILYTTDGKTWTANAKR
>NZ_CP022383.1|WP_095901366.1|1571477_1571726_+|hypothetical-protein
MNNKTYSSFEEIDNEIRLLRLEKEIDKLSLTQQVSASAESLSPKNLLANTWVSLLFNNKRWINIALGYGMQLLVKRYLNKNR
>NZ_CP022383.1|WP_095901365.1|1571110_1571488_+|hypothetical-protein
MAIYSIKETFVEVPTKANSAFNSQFAYYKLVLFRFIAKSSYGLITFFIYAFASLLILFFLSLAGAYAIGEALGSNGLGFAIVGAFYILLSLVVLLFRKKLIERSLLRKLSEIYFKTDPEEEENEQ
>NZ_CP022383.1|WP_095901364.1|1570779_1571106_+|YtxH-domain-containing-protein
MSKTANAVLGLAVGTAIGVGLGILFAPDEGKNTRKKIKDSLRDKSDELKEQLDNLTENVREKSLELKGSLEEKVDRLFSKASNKSEDVISLLEKKLASLKEEAAKVKK
>NZ_CP022383.1|WP_095901363.1|1569869_1570403_-|DUF3127-domain-containing-protein
MEIQGRIIKINPTQTVGQNGFQRRDVVIMTEEQYPQYIPFDFVQEKCVLLDNFQEGQTVRISFNIRGREWVNPQGETKYIVNLQGWRIENAEIAQNYPPQGYGQPAYPPQGYAQPQYQQAPPQYQQVAPQYQQQVPPQYPPQMPQQQFQSTPQQAFGTPPVQNAPVAPIEPEDDLPF
>NZ_CP022383.1|WP_095901362.1|1569228_1569867_-|leucyl/phenylalanyl-tRNA--protein-transferase
MTYLINDETPFPSPETASEEGIVAFGGNLTPARLVEAYSQGIFPWYNEGDPVLWWCPDPRFVLFPEKLHISKNMRKLLSKAPYRVTYNRCFTEVMQQCATVSRKDQHGTWIHPELIEAYTTLHQQGIAHSVEVWQDETLVGGLYGLQMGKIFCGESMFSKQPNASQYGFITFLQAHPHIALVDCQIHSEYLESLGAEEIPRATFLKLLTINR
>NZ_CP022383.1|WP_095898360.1|1568612_1569101_-|hypothetical-protein
MAILRLNKNAKRIIIVIMVITAIIIARIIISNYYENQKVELSKKCFNDSNIGFYHKEFSFYFPEELELQGAQILQIHNQDTIVIDYRILGHNIVINSPKNLKSEDIIKIILKDAVFTLRDFRNGPRFGGGRVFLGCFLQECVINNRKKICDDAGIFMFFSTL
>NZ_CP022383.1|WP_095901361.1|1567262_1568303_-|aminotransferase-class-V-fold-PLP-dependent-enzyme
MKISFKNDYAEGAHPMILEALMRTNAVQQAGYGNDSYSAAAKELIKNKIENPEAQIFFVSGGTQANMLVIGTLLRTYQSVIAPETGHIADNETGAIEAVGHKIHLAPATNGKITPESITDFATRYTNYPHQVQPRLVYITNATEIGTIYTLAELKAIYKCCQAHNLLLFMDGARLGSALNAEDNDIQWKDLARYTDVFYIGATKNGGLLGEAIVFNKPALADGFEYYLKQQGALLAKGRLLGLQFLTLFENGLYDALALHANKQMKRIKEAFVANGYTLLSDTCTNQLFPILTHTQIAALAEQFDFYQWQKVDETHTAIRLISSWATTDAQVDTLIQAIQLLSVAK
>NZ_CP022383.1|WP_095901369.1|1574745_1575087_-|CRISPR-associated-endonuclease-Cas2
MMIADRYNAYRIMWVLVLYDLPTETKKMREEAQNFRDKLIKDGFTLFQFSMYIRHCPSRENAQVHINRIKQNLPQYGNIAIMCLTDKQFGDMEFFYCQRETAAPETYVQLELF
>NZ_CP022383.1|WP_095901370.1|1575284_1579565_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MKNILGLDLGTTSIGFAHIVEDENKEKSEIKELGVRIVSLTTDEQSDFEKGKSITTNANRTLKHGARLNLDRYQQRRKYLIDLLQKANLITSSSILAENGKNTTHSTWQLRAKAVTERIEKEEFARVLLAINKKRGYKSSRKAKTEDEGQAIDGMAIAKRLYDENLTLGQLSLQLLQQNKKLLPDFYRSDLQREFDLVWNFQKQFYPDILTDSFYKELQGKGKDATSKAFSKRYHFDTAENKGSKESVRLQAYQWRAEAMSKQLSKEEVAYVLTEINNNLNNASGYLGAISDRSKELYFNRQTVGQYLYAQLQENRHNSLKNKVFYRQDYLDEFERIWETQASFHKELTEELKKQIRDVVIFYQRKLKSQKGLISFCEFESKEIEIEKDGKTITKSIGARVVPKSSPLFQEFKIWQILNNVTCKRKGIRKKKSSAKSTELDLFNEPSQTIFSLDMECKQLLFEELNLKGDLKSDKVLKLLGYSPQEWEINYNQLEGNRTQKALYEAYLKIVEMEAHDVKDILQIKSAKDDWSLDESPLSASEIKEKIKDIFQALGICTKILYFDPLLPVKEFEKQDSYQLWHLLYSYESDDSTSGNETLYRILEKKYAFKREHARILANVALQDDYGSLSTKAIRKIYPYIKENQYSKACELAGYKHSKLSLTTEELEARELKNIIPLLKKNALRNPVVEKILNQMINVVNALIEKNSERDAEGKITKYFHFDEIRIELARELKKNAQKRYEMTQNINKAKLEHQKISEILQKQFGIKNPTKSDIIRYRLYQELEHNGYKELYTNAPIARDMLFSKNIEIEHIVPKARVFDDSFSNKTLTFHRINSDKGESTAFDYITSLNSEEELNQYLTRVENAYKTKSISPAKYKNLLKKASEIGDGFINRDLRDTQYIAKKAKEILFQVTKNVLSTSGSITDRLREDWGLVDVMKELNMPKYQSLGLTEVEERKDGNKVTVIKNWTKRNDHRHHAMDALTVAFTKPSYIQYLNHLNARKDENNKNYSVILAIEEKETIKVPTNNGKNKRVFIEPIPNFRQVAKKHLEEIFISHKAKNKVVTKNVNKPAGTDKQQITLTPRGQLHKETVYGKYQYYVNKEEKIGVKFDKETIAKVSNPLYREALLKRLQANDNDPKKAFTGKNALSKKPIYLDEAKTKTLPEKVNLTYLEEDFSIRKDISPDNFKDLKSIEKVIDQGVKRILIKRLQAYGNDPKKAFVDLEKNPIWLNKEKGIAIKRVTISGVNNAQPLHIGKDHLGKTTLNKEGKEIPVDYVSTGNNHHVAIYRDKEGNLQEQIVSFFEAVVRTQQGLPIIDKTYKQEEGWQFLFTMKQNEMFVFPNATTGFNPAEIDLLDPKNKKQISPNLFRVQKIATKDYFFRHHLETNVETDNVLKNTTWKREGLSGLKDIVKVRINHLGDIVSIGEY
>NZ_CP022383.1|WP_095901371.1|1585422_1587237_-|DNA-binding-protein
MKLNLLKPTAIALLSLFAITSCVKDDDYEIPNPNGEKPLPPFSGKVVTFDVATAQATNTVVTYGADEAIEGYVISSDEAGNFYQKIYIQNEDKTKGVTVAINKTGLYTDFPLGAKVQLRLKGLTSQINNGGVDFGSGIFQANNGRTSVGRMSEAIAKNHLFDKGGVRKTLAELAKADASINTLKVEANVNQLITLKGVHFKTADVGKEMHQKTNDARQGTDYTLTDAQGNTIPFRTSRYAKFKDEKVPAGTLDITGVLTKFGQNWQFMISNYADIVVVSGGTSTGTQTNTTVETIEASTATAASFVEGKKVKLHGNLTVEGTKAYILFSDGTKIQLYTRNFKNISNENKTNLKENGKEVTVTGTFGKFNDTLQISYEQDSDLVWGASNNNPNPPATVETVEASTATAASFVEGKKVKLHGNLTVEGTKSYIVFSDGTKIQLYIKNFKNLSKESKDNLKINGKEVTVTGTFGKFNNTLQIAYEQDSDLVWGASNNNPNPQPPATVTELDASTATAADFQLNKVVKLTGTIKIINNRSTIVFTTDNTEIQLTTKGYGSLPDDFKTKISTEGKKVIVKGTFIEFKDKKKGTVTKQLKYDSIDDVQFP
>NZ_CP022383.1|WP_002682272.1|1587288_1587975_-|hypothetical-protein
MNKLSIFRKGALALLLATTALVGCSKSNESNSDTEFQGVPYMLLTTNKPVGSNISLTIVAKEADKKDVWIDLNNNGVFDTGSDVRLTAATTTYKLQGNTVRVYGKVTTFKCDRNEVTSLDVTRNAVLERLDMSHNKIKEVNLHNNTQLTYLKVSNLPLVGLDLTNNKKLTELRFNLTFSGEKLKKCASTMHENGGGTVYMNPRITDDPAEKQTMQTLTNKKWKIGNCQ
>NZ_CP022383.1|WP_095901372.1|1588026_1590744_-|TonB-dependent-receptor
MFKKFYLFILLLMSASAFAQWRVEGTVVDELSKKPLEGVKVHVNASAWQVTTNGKGKYALSLPEGEYLIIYSLNGYTRQEQLVSVGGEKITQELPVVSLTVDVVQESEQMAVINESELEDDESSADAMSGLLQSSQDVFMRRAAFDFSSAFFKPRGYDSKDVTVLINGIPMNRFENGRAQWNNWGGLNDVTRNQEYSNGLSKSDYTFGGLMGSTYINIRPSLNRAGLRLTSSASNRSYTGRLMATYNSGVLRNGLSFMVSASRRFAPQGSWVDGTLYNAYAFSAAVEYQLNDHSSFNLLGMFSPVKRGKSSPLTREALDLFGYQYNPYWGRQMGDKRNSRNRVISEPIFVLSYNYLKNSTRLNIDLGYQFGEIGNTRIAYANAQNPEPNYYKNMPSYYLNQNSGPDFAAAENQKKDILENPQLNWEKLYYANYNNTDKHSTFIVSNDINRERTLSANVNFAMPIHDFIKWTSGVVYRNISSDNFAEIDDLLGGQYFMNYDYFENKPYDANEADMKKQKGDKWNYFYSLKSNVGEAFSQLEFTFKKAELFIAGRYHYTDVQREGKYNYPLYSDSYGKGAMQVQNGVSTKAGITYALTGRHLLQLNVGYFNTPQSLRNIYANIRNSNRLLPNLKNELAYSADASYIFRMPYLKGRLTGFFTEIENTAETNFFYTETAITDEIDKDFVAQTVDGIQKRHFGLEFGAEAQLHPTVKLTAAAAIGQYTYINNPSLYISAGDVNKAIDEVKMKNYHVPSGPQQAYSLGLEYRNPKYWWVGATANFLAQNYVSLSALNRTSQFFIDPATKATYSNIDFDKARQLLKQERLDDVFLVNLVGGKSWRVKKTYINLMASVNNLFNTKFLSGGFEQSRTANYGRMLQDNAQGVPSFGNRYFVGYGRTYMLNLAVSL
>NZ_CP022383.1|WP_095901373.1|1591082_1593254_-|reprolysin-family-zinc-metalloprotease
MKHIIYLFLYLSFTTAQAQWNITLPNGETLNLQWQERENSQQNKGIHTFVGYNQNQFVATLVVHSNKEASGSLQWGGITYQLSGSQQGKLSAKERFRHNPNAKCGIDTHQHKPLFPSPQNSPTARPITTTTSLMPNDPEGILYLYRLAVLVDYHDFAHTFGSDITQVKDFLLNLETFLNEVYVRDIGLKFSIVADNRLIIQEAAKQLYKQKSRRDIIENSTEKINEFIGDKQYDIGIVIAPGTDATLSGLAFFSGGFRLVRKGGASAIAENATIAHEIGHLFGADHTFKNVYSGNSLYTEPRYGQSLMGYSNNFPDGAFFSLPTAYQIRSGIVNRSYFKDSQRTQLVNRNGNDVSNFNYAYGIKTESSFPTIDRTKLQETYTIPKDTYFQFRIKATSPNNLPIYYTAQLTSKAGVNDPKFLTRKGKTEGNPITFQTQYSDLGGFIEYTRPNAKGEHLFWVATSNPAPQRFVNYDMVAVKVNIADGKTFAITNGMNDEYQGGDKIALHWQVDPNFFDSNSKVRILLSDDFGKTFKYTLVESTENDGTCEVTLPNIEIGTVEWGKQPKIQLPAGVIKVEVIDHIAFAITNVAPYKISNGKSVPNGGFKVKKKTGTPTPTEDSKPQQEPEKNIVIYNGVSTENANNYFTVEGADDNSPIHLLIFDEMGLKVYENEHYGKNGDYFRGNAKAKGFIGNNKALHGTYFYIVRYSKHGKKEQQKGFLYVR
>NZ_CP022383.1|WP_095901374.1|1593371_1594334_-|elongation-factor-Ts
MANITAADVNKLRQATGAGMMDCKAALIEAEGDFDKAIEVLRKKGQKVAAKRADRDSKEGAAIAQVNANHTVGAIISLNCETDFVAKNADFIALAKDLADLALTVNSKDELLALNYKGITVAEKLLEQTGVIGEKIELGAFEKVEAPFVGSYIHHGNKIAAIVGLSSAIADATEVSKNLAMQIAAMGAETLSYKDFSAEYIAKETEARIAIIEKENEELHRLGKPLKHVPQYVSQAQLTPEVLAKAEADAKAELKAEGKPEQIWDKILPGKIQRFISDNTTLDQEKALLDQVYIYDESKKVSEFVKSKNIEITAFKRVAL
>NZ_CP022383.1|WP_016478130.1|1594457_1595183_-|30S-ribosomal-protein-S2
MANNIEIKDLLDAGVHFGHLTRKWNPNMAPYIYMERNGIHVINLYKTAAKIEEAAEALKKIVASGKKVLFVATKKQAKDVVAEKATSVKMPYITERWPGGMLTNFVTIRKAVKKMSSIDKMKKDGTFDTLSKREKLHVERMREKLEKNLGSIADMSRLPGALFVVDTLREHIAVKEAQKLNIPIFAMVDTNSDPREVDFAIPANDDASKAIEKVLSYITEAVNEGLSGRTAEANKEAEAAE
>NZ_CP022383.1|WP_095901375.1|1595379_1595766_-|30S-ribosomal-protein-S9
MEVIHTIGRRKTAVARIYLKAGNGTITVNKRELNNYFTTPTLQYKVKQALTLVGAEDAYDVKVNVYGGGITGQAEAVRLAIARALCELNAENRTVLKPEGLLTRDPRMVERKKFGQKKARKRFQFSKR
>NZ_CP022383.1|WP_002681881.1|1595765_1596221_-|50S-ribosomal-protein-L13
MDTLSYKTISANKATANKKWVLVDADGQTLGRLASKVAKLLRGKYKPDFTPHVDCGDNVIVINAEKINLTGNKWEDKTYLRHTGYPGGQRTTGVKQLLEKHPERIIEKAVKGMLPKTKLGAAVLRNLKVYAGTEHKQEAQQPVTINLNDLK

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Crispr_ID: NZ_CP022383_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022383_2

1962177-1962264

Orphan

Consensus_repeat	Method
TTGCGTCGCTACATTCCCCCTCTTTGAGG	CRISPRCasFinder

1 spacers

PD-DExK

The CRISPR arrays of NZ_CP022383_2

>merge|NZ_CP022383|2|1962177-1962264|CRISPRCasFinder
TTGCGTCGCTACATTCCCCCTCTTTGAGGGGGGTAGGGGGGAGGTTTTATCATAGAGGCTTGCGTCACTACATTCCCCCTCTTTGAGG

>NZ_CP022383|2|2|1962177-1962264|CRISPRCasFinder
TTGCGTCGCTACATTCCCCCTCTTTGAGG	GGGGTAGGGGGGAGGTTTTATCATAGAGGC
TTGCGTCACTACATTCCCCCTCTTTGAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022383.1\|WP_095901631.1\|1954562_1955009_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022383.1\|WP_095901646.1\|1972618_1973902_+\|Na+/H+-antiporter-NhaC-family-protein	unknown	unknown	gnl\|CDD\|224671
NZ_CP022383.1\|WP_095901634.1\|1958459_1959251_+\|superoxide-dismutase	unknown	unknown	gnl\|CDD\|223678
NZ_CP022383.1\|WP_002680356.1\|1959488_1960379_+\|fructose-bisphosphate-aldolase	unknown	unknown	gnl\|CDD\|180045
NZ_CP022383.1\|WP_095901641.1\|1965340_1966249_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022383.1\|WP_095901630.1\|1953513_1954518_+\|BtrH-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|379786
NZ_CP022383.1\|WP_095901639.1\|1963611_1964523_+\|1,4-dihydroxy-2-naphthoate-octaprenyltransferase	unknown	unknown	gnl\|CDD\|235695
NZ_CP022383.1\|WP_095901635.1\|1960406_1961480_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236766
NZ_CP022383.1\|WP_095901643.1\|1968128_1970915_+\|DNA-polymerase-I	unknown	unknown	gnl\|CDD\|235591
NZ_CP022383.1\|WP_095901636.1\|1961479_1962151_+\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|381175
NZ_CP022383.1\|WP_095901638.1\|1962897_1963533_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	unknown	unknown	gnl\|CDD\|274750
NZ_CP022383.1\|WP_095901629.1\|1952558_1953422_+\|M48-family-metalloprotease	unknown	unknown	gnl\|CDD\|320704
NZ_CP022383.1\|WP_095901642.1\|1966431_1968078_+\|Ig-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|379073
NZ_CP022383.1\|WP_095901644.1\|1970974_1972060_+\|DUF1016-family-protein	PD-DExK	COG4804_PD-DExK_CAS-I:CAS-III	gnl\|CDD\|377634
NZ_CP022383.1\|WP_095901645.1\|1972065_1972590_+\|methyltransferase	unknown	unknown	gnl\|CDD\|372616
NZ_CP022383.1\|WP_095901640.1\|1964560_1965241_+\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|234811
NZ_CP022383.1\|WP_095901637.1\|1962492_1962870_+\|endonuclease-domain-containing-protein	unknown	unknown	gnl\|CDD\|238509
NZ_CP022383.1\|WP_095901632.1\|1955086_1957558_+\|glycoside-hydrolase-family-2-protein	unknown	unknown	gnl\|CDD\|225789
NZ_CP022383.1\|WP_095901628.1\|1950235_1952200_-\|1,4-alpha-glucan-branching-enzyme	unknown	unknown	gnl\|CDD\|215246
NZ_CP022383.1\|WP_095901633.1\|1957611_1958418_+\|toxin-antitoxin-system-YwqK-family-antitoxin	unknown	unknown	gnl\|CDD\|225405

Protein	Function_ID	Function_description	E-value
NZ_CP022383.1\|WP_095901646.1\|1972618_1973902_+\|Na+/H+-antiporter-NhaC-family-protein	gnl\|CDD\|224671	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion].	6.20021e-59
NZ_CP022383.1\|WP_095901634.1\|1958459_1959251_+\|superoxide-dismutase	gnl\|CDD\|223678	COG0605, SodA, Superoxide dismutase [Inorganic ion transport and metabolism].	4.96053e-92
NZ_CP022383.1\|WP_002680356.1\|1959488_1960379_+\|fructose-bisphosphate-aldolase	gnl\|CDD\|180045	PRK05377, PRK05377, fructose-1,6-bisphosphate aldolase; Reviewed.	0
NZ_CP022383.1\|WP_095901630.1\|1953513_1954518_+\|BtrH-N-terminal-domain-containing-protein	gnl\|CDD\|379786	pfam16169, DUF4872, Domain of unknown function (DUF4872). Members of this family are often found in the gene neighborhood, or fused to, non-ribosomal peptide synthetases.	3.18595e-73
NZ_CP022383.1\|WP_095901639.1\|1963611_1964523_+\|1,4-dihydroxy-2-naphthoate-octaprenyltransferase	gnl\|CDD\|235695	PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated.	4.81981e-91
NZ_CP022383.1\|WP_095901635.1\|1960406_1961480_+\|hypothetical-protein	gnl\|CDD\|236766	PRK10811, rne, ribonuclease E; Reviewed.	1.17991e-06
NZ_CP022383.1\|WP_095901643.1\|1968128_1970915_+\|DNA-polymerase-I	gnl\|CDD\|235591	PRK05755, PRK05755, DNA polymerase I; Provisional.	0
NZ_CP022383.1\|WP_095901636.1\|1961479_1962151_+\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl\|CDD\|381175	cd11648, RsmI, Ribosomal RNA small subunit methyltransferase I (RsmI), also known as rRNA (cytidine-2'-O-)-methyltransferase. RsmI is an S-AdoMet (S-adenosyl-L-methionine or SAM)-dependent methyltransferase responsible for the 2'-O-methylation of cytidine 1402 (C1402) at the P site of bacterial 16S rRNA. Another S-AdoMet-dependent methyltransferase, RsmH (not included in this family), is responsible for N4-methylation at C1402. These methylation reactions may occur at a late step during 30S assembly in the cell. The dimethyl modification is believed to be conserved in bacteria, may play a role in fine-tuning the shape and functions of the P-site to increase the translation fidelity, and has been shown for Staphylococcus aureus, to contribute to virulence in host animals by conferring resistance to oxidative stress.	2.08792e-121
NZ_CP022383.1\|WP_095901638.1\|1962897_1963533_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	gnl\|CDD\|274750	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ. This family describes a protein family, YeaZ, now associated with the threonylcarbamoyl adenosine (t6A) tRNA modification. Members of this family may occur as fusions with ygjD (previously gcp) or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI. [Protein synthesis, tRNA and rRNA base modification].	7.69105e-61
NZ_CP022383.1\|WP_095901629.1\|1952558_1953422_+\|M48-family-metalloprotease	gnl\|CDD\|320704	cd07345, M48A_Ste24p-like, Peptidase M48 subfamily A-like, putative CaaX prenyl protease. This family contains peptidase family M48 subfamily A-like CaaX prenyl protease 1, most of which are uncharacterized. Some of these contain tetratricopeptide (TPR) repeats at the C-terminus. Proteins in this family contain the zinc metalloprotease motif (HEXXH), likely exposed on the cytoplasmic side. They are thought to be possibly associated with the endoplasmic reticulum (ER), regardless of whether their genes possess the conventional signal motif (KKXX) in the C-terminal. These proteins putatively remove the C-terminal three residues of farnesylated proteins proteolytically.	8.49498e-25
NZ_CP022383.1\|WP_095901642.1\|1966431_1968078_+\|Ig-like-domain-containing-protein	gnl\|CDD\|379073	pfam13205, Big_5, Bacterial Ig-like domain.	1.1184e-18
NZ_CP022383.1\|WP_095901644.1\|1970974_1972060_+\|DUF1016-family-protein	gnl\|CDD\|377634	pfam06250, DUF1016, Protein of unknown function (DUF1016). Family of uncharacterized proteins found in viruses, archaea and bacteria.	1.08511e-73
NZ_CP022383.1\|WP_095901645.1\|1972065_1972590_+\|methyltransferase	gnl\|CDD\|372616	pfam13489, Methyltransf_23, Methyltransferase domain. This family appears to be a methyltransferase domain.	0.000206191
NZ_CP022383.1\|WP_095901640.1\|1964560_1965241_+\|metal-dependent-hydrolase	gnl\|CDD\|234811	PRK00685, PRK00685, metal-dependent hydrolase; Provisional.	1.08909e-76
NZ_CP022383.1\|WP_095901637.1\|1962492_1962870_+\|endonuclease-domain-containing-protein	gnl\|CDD\|238509	cd01038, Endonuclease_DUF559, Domain of unknown function, appears to be related to a diverse group of endonucleases.	7.70343e-33
NZ_CP022383.1\|WP_095901632.1\|1955086_1957558_+\|glycoside-hydrolase-family-2-protein	gnl\|CDD\|225789	COG3250, LacZ, Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism].	4.48491e-63
NZ_CP022383.1\|WP_095901628.1\|1950235_1952200_-\|1,4-alpha-glucan-branching-enzyme	gnl\|CDD\|215246	PLN02447, PLN02447, 1,4-alpha-glucan-branching enzyme.	0
NZ_CP022383.1\|WP_095901633.1\|1957611_1958418_+\|toxin-antitoxin-system-YwqK-family-antitoxin	gnl\|CDD\|225405	COG2849, COG2849, Uncharacterized protein conserved in bacteria [Function unknown].	2.68498e-24

>NZ_CP022383.1|WP_095901636.1|1961479_1962151_+|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MSKLYLIPTPIGNLEDITLRALRLLKEVDIILAEDTRTSSKLLKHYDIHTPMQSYHLFNEHKVVDSWVQRIKGGTTIALITDAGTPAISDPGFLLTRACIAEGVAVECLPGATAFVPALVNSGLPNDRFTFEGFLPDKKGRQTRLSQLATENKTMIFYVSPHKLLKTLTDFITTFGADRPASLSRELTKLHEETQRGTLQELLDFYKDKNVKGEIVMIVSGNK
>NZ_CP022383.1|WP_095901635.1|1960406_1961480_+|hypothetical-protein
MKEALEHDLIILATEILANEGEWNLAQLNKQAHKITEKITILTFVEKYYQTLGASEDRMYRTMRKVSDFIDDNRQEDLFDIEVEASEVQPITAPKTAAKETPKEEPATFVAMEPAPITKEEKTAPAEKPTPAEKPVAKKTLKEEQYPEPHWALPVNRSKTEEVAVPVEKVEEVRKVEVVEKPKPKETPAVAFEIEQPAIEQPTIEQPTIEKPEIDESELSKSAIKQLADFIQQPEYTDEERILKQTPSLEEFISQSKHTVFDKKDADEEVKPAQSLNDKFGKTAQIGLNDKLAFVQKLFFGSESEYNKVVKHIADLHSMQDAVIYIEQEVKPTYNYWKGKEEYEQRFLDLTLKRFEV
>NZ_CP022383.1|WP_002680356.1|1959488_1960379_+|fructose-bisphosphate-aldolase
MNKEQFEQMKNSKGFIAALDQSGGSTPKALKLYGVTEDQYSNEEQMFDLIHQMRTRIIKSPAFSHNKIIGAILFEQTMDRQIDGKYTADYLWDEKHVVPFLKVDKGLEPLDSDGVQLMKPISGLAELLSRANERHIFGTKMRSVVKKASPKGIARVVQQQFEVAKQIIAAGLVPIIEPEVDINIPDKSPAEAILRDEVRKQLDALPSTANVMLKLSLPTINNLYKEFTQHPRVVRVVALSGGYPREKANAILAENKGVIASFSRALTEGLSATQTDEQFNNALAHTVEGIYEASIK
>NZ_CP022383.1|WP_095901634.1|1958459_1959251_+|superoxide-dismutase
MKLKNAITLSAVALATAFTSGNLYAQKKKSKTKKAQEETVIGVQRGSNYGDPKDVKAEAGAFAIVPLKYKYSSLEEYIDEETMFIHFSKHYVAYLNNLNKAVAGTPQAQMSIEELLRTLDMNNATLRNNAGGYFNHNMYFAGMSRSGGSPKGALAAAIDRDFGSFENFKKAFAEAGAKRFGSGWAWLVVNNGKLQVVSTANQDNPLMPGLGVSGIPVLAMDVWEHAYYLKYQNRRGDYINNFFNVIDWDVAEQLYQKAIATKP
>NZ_CP022383.1|WP_095901633.1|1957611_1958418_+|toxin-antitoxin-system-YwqK-family-antitoxin
MKFLFLSISLLFVSTSFAQKLLPERDVRQQVFAGEKFFKLYTTDEPLDGTYKVVMSGGAYYEATFVEGRINGAYKRYNGEGKLTAEEHYKNGKNDGTWKYYNDKGKLISLKNYKDGKPWGKWQLWDDDAEWLQSESDYKGEKNYTLRIYYDNGKLSEEHTYKEGKEDGSQKYYQREGYLSKELLKENGELVLYKTYHSNGKLYSEMPYKDGKKNGKSVIYYPNGKITEEGTYKNNRKEGVWKYYNQAGRLTSEETYDHDNVVKTVNYN
>NZ_CP022383.1|WP_095901632.1|1955086_1957558_+|glycoside-hydrolase-family-2-protein
MNKINLLLLLSVVATSWAQQQQTLQKGWKFTREDKPAFSQTNYNDAKWQRVTIPHDWAIYGPFDMENDIQRTAIKQDGQKAAIEHTGRTGGLPFVGVGWYRTQFNVPELTSDKQVFVQFDGAMSNPEVFVNGQKAGEWHNGYNTFFLDITPYVKANNNTLAVRLNNLTQMSRWYPGAGLYRNVHIITKNKTHIPIWGVQITTPEITNNFAKVVVNTEFVADKKTSIAAETVIFNNQGERVAYANTKATPYTTDKISAELYIDNPRLWDIGKPYLYKAVTKLYEGDTVKDEVTTTFGVRSIELKPNDGLYLNGRRIKIQGVCMHHDLGALGAAVNESAIRRQISIMQDMGVNAIRTSHNMPAPEYVRLADEMGMLLAVESFDEWAIPKVDNGYHLYFKEWAEKDLTNLVKHYRNNPSVLMWFIGNEVEEQSVESGSQVARYLQDIIKKYDTTRPVSNGMDRPHDVLKNNMAATMQLMGFNYRPFKYKEAYRKLPQQLILGSETASTVSSRGVYKFPVERKSMAKYPDMQSSSYDVEHCGWSNLPEDDWIHQEDLPYTVGEFIWTGFDYLGEPTPYYVEWPSHSSYFGAVDLAGLPKDRFYLYRSHWNKEDETLHILPHWNWEGREGETTPIFVYTNYPSAELFINGKSQGKRSKDLSIKLEEEEKDGNPSDLNRQKRYRLMWMDTKYEPGIVKVVAYDANGKAVAEKEIHTAGKPYALRLSTEHKTELTPNSKDLAFITVEAVDKDGNLCPTVNDLVTFTVKGAGFYKAGANGDPTCTDQFHLPKMHLFNGKLVMMVQAGDKSGIINIEAKTKKLKGKIDIMVR
>NZ_CP022383.1|WP_095901631.1|1954562_1955009_+|hypothetical-protein
MKKLINVTFALLLLCSAVTLVSCGKDDDKGSGKEYPEGTRELTQNGITAKIDQERWGGAGGNTVLYVNLLLTKSNANTKPTGRVYLQARTTDGEILQAWSNGELGKGAEFGSRWIGNNHHLEFSFSLLNGKQMKANSVTISKIEVYSN
>NZ_CP022383.1|WP_095901630.1|1953513_1954518_+|BtrH-N-terminal-domain-containing-protein
MATIDFKHRQSAHCENGVASNLLYFNGVQLSEPMVFGIGSGLLFFYFPWIKVNEAPAISYRTMPGHIFSKVAKRLGFKVKRQKFSSPEKAQQALDDNLAKGIPTGLQVGVFNLPYFPDEYRFHFNAHNLVVYGKEDGKYLISDPVIPHVTTLTPEELTKVRFPSGVLAPKGHLYYPTHLPKELSLEKAIWKGIKQTCSTMLAPVPIVGVAGIKTVSKDILKWYRKKGAKTTNHYLAQLIRMQEEVGTGGAGFRFIYGAFLQEAGKLLKNDALIELSKEITDIGDAWRDFAVAIARVYKNRSTQADVYNALSQQLYAIAVREEAFFKKLKLVSKK
>NZ_CP022383.1|WP_095901629.1|1952558_1953422_+|M48-family-metalloprotease
MNPFFLYIIYVIAIFALKIFVAYLSFKIDKNKKYAFTDIFIWKDELFDSAVVSLIFILMMLFFSHIQFTNAMAVIMLALINSYYFLIVPLRALFQKKKYLKNEEIESFLRNEGYSYRIRIIKGKIENAFATGVFPFTKTILIGEPLCEKMTDNELKGVVFHEIGHLKLGHLYKMFFLNMVSSIILVFLYSFSTDIIESQHYRDTIMEPVIVALVGGIYGVIAFILIPYFFQRRLEYQADAFAVRKVGAEQYVQTLEKLNEISENKMMKGSVTHPSLKDRIKNAYNTR
>NZ_CP022383.1|WP_095901628.1|1950235_1952200_-|1,4-alpha-glucan-branching-enzyme
MNDPLLLPYLPIIQGRHQHFINTLHRVQGDASRLADACNSHLYYGLHRNNTEWVLREWAPNATAIFLLCDSNDWQKNNHYSFTKLNDQDWELRLPANILRHEMLYKLLVEWEGGSGERIPSHTTRAVQDDYTKVFSAQVWCPDHPYHWQHPRPKAAPHPLIYEAHIGMSTEHQRVSTFIEFRLYVLPRIAALGYNTIQLMAIQEHPYYGSFGYQVANFFAVSSRFGTPEELKELIDAAHGLGIRVLLDIVHSHSVSNEAEGLSLFDGTDYLYFHRGERGKHPAWDSRCFDYGKPQVLNFLLSNCKYWLEEFRFDGFRFDGVTSMIYYDHGLGKAFTDYSFYYDGNEDNDALVYLTMANQLIHELYPEALTIAEEMSGLPGLASPISEQGMGFDYKLSMGIPDYWIKLLKEVPDEQWHVGDIYYELTNKRAEERTISYAESHDQALVGDKTIFFRLTDKEVYTGMSVFDHNLVIDRAMALHKMIRLITLATAGGGYLAFMGNEWGHPEWIDFPRQGNNWSYAHARRLWSLVDNPDLKFKYLNAFDSAMIHFAAESKFLDREPRVLVRDIERQLLIFERSGYLFVFSFNPTTSYTDYQFDVPAGKYITVLNTDNPAFGGDNRIDESVEHFTQYTGKENLLSLYIPARIGMVLKLAD
>NZ_CP022383.1|WP_095901637.1|1962492_1962870_+|endonuclease-domain-containing-protein
MNNLIPYNPKLREFARFLRNNSTFPEILLWKEIKNKSLGVEFKRQVPILEYIVDFYCQELKLVIEIDGHIHDFRYVEDKNRQNQMEKYGLTFIRFSNEEIKTNMFSVVLSLESKIEELKREKNIL
>NZ_CP022383.1|WP_095901638.1|1962897_1963533_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB
MLLLSIETSGLNCSVALSKDNRILAEKSENAGKFTHSENLHLFIEAVMQQASMPLSALDAIAVSAGAGSYTGLRIGIATAKGLCFALGKPLIAIPTLQILAHQAKANCIIPMLDARRMEVYSAVFNSQYEFVTPTEAKILDEHSYQDELNKGKVTFLGDGSNKFAAICKHPNAVFIPDAFPQAKDMIPFAMTKYNAQDFEDIAYFEPTYLK
>NZ_CP022383.1|WP_095901639.1|1963611_1964523_+|1,4-dihydroxy-2-naphthoate-octaprenyltransferase
MKAITLIKAARLRTLPLSVAGIITGSALAYRNDPSAFSWQIFAWALLTTILFQVLSNFANDYGDGVKGTDNEHRLGPQRALQSGAISRSQLKRVVLITAGLSILSALILIYLAFGSENLLYLVIFFVLGLLCVAAAIKYTVGSSAYGYRGLGDLFVFVFFGLVSVVGSEFLYSQSLQWITFLPAISIGLLSVAVLNLNNMRDYENDQRSGKHTLVVKMGISLAKYYHYYLVVLAMVALLSFSVLRLQMRWELLYLIAFLPLVVHLLSVKRNNELQLLDKELKVVALSTFLLSVLFFIGIYISK
>NZ_CP022383.1|WP_095901640.1|1964560_1965241_+|metal-dependent-hydrolase
MEITFYGHASIGIKIGETHLLIDPFISENPLASDIDINQIKADYILITTAGQDHTWDVEKIAKRTKAQIISNFEIARYFFNLGIENSHPMDLGGTFNFPFGSVKMVSALHSSTFENGSDGGSACGFVIKTADKTVYIAGSTALHFDMQLIPVRYKLDLAVLPIGGNFTMDVEDAIMASDFVKCNKILGYHYNTMSHIKIDKDAAVRSFKAKGKELILLGVGQIVVV
>NZ_CP022383.1|WP_095901641.1|1965340_1966249_-|hypothetical-protein
MRRVSLLLSAVGLLVACNKNDYNEEPELIYFADKIHEEILAVGSTETTTTDYEFKYRGVGLVTSESVKIFTPSTITRTLTYETSYDGSFPKTTLYKVGGTTVNTTTYDQYIDRGSIKKKTIVETGKENLPTVEEYEYYNRNTLSKYTSAKKTATNTTVYTVKEYTWGGRNELNVKTSVYTQTGNTTTSATVVFTDKYLLNYNETVREHTRTENNQTVVITYTYDTKTNPRYLQFSHRMTHPDFFLQEGYGRNNITKKTVKYPNVAGKDYEEETAYEYFKNEYPLKAVIKRNGAVVGSKEFTY
>NZ_CP022383.1|WP_095901642.1|1966431_1968078_+|Ig-like-domain-containing-protein
MKHRLPILLSLLIALTLWQCARRGSPTGGPKDVTPPVLLQSVPKSGAMKFHGKKIRLQFDEFVVTKDVRKQLIISPPMKTFPIISPTSASKWLEINIVDTLKPNTTYVLNFGNSIQDYNEGNPISDFKYVFSTGSTLDSLWYEGDIADAIAPKPDNFVTVMLYPYNEQYNDSLVYKTQPTYVTNTLDSLDSFVLEYLKEGKYKLVALKEKSPNYIFNPKDDKIAFMDEPITVADLKGNPQGFYPKLRLFKEVPPYKAHRPTQAAGNRVQFGFEGKTDSVKIKPISHVTPDFKYIISKDPKKDTLNFWYTPKQKDSLVFTIAKQQKIDTFKVRLKEMKNDSLQVENLFSGDLPMHKDFGFKSNIPIVKTDPSKLKVFAGKDSTAVAVPFKTRLEPNNLEFYLSFDKKNDETYRIEALPNALTDFFGHTNDTLKVTLRTKKLEEVAILKMHLNVAENTLQYPVILQLTNEKATEVLREIYIEKPLTEYLFENVTPGKFRLRLIEDKNKNHQWDTGSFLEHRQPERVWYLPKEIELRANWEVEENWQITNP
>NZ_CP022383.1|WP_095901643.1|1968128_1970915_+|DNA-polymerase-I
MKKRLFLLDAYALIFRGYYAFIKNPRINSKGLNTSAILGFMNSLFEVIKKEKPDHLAVAFDKGGSVARTELFADYKANREETPEAIRLAIPYIHEILKALHIPIIEKEGYEADDIIGTLSKQAEAQNYQVYMVTPDKDYAQLVSDNIFMYRPARSGNDIEIWGVKEVQEKFEVQNPLQVIDFLGMMGDAVDNIPGLPGVGEKTAKKLLADFGSMENLLDNTDKLKGKLRENIENNKEKGILSKQLATIMLDVPVIFDEADFAMSQPDFEAVGKIFDELEFRQLLQNFLKTYQPEAVVQTPPKAASGQLDLFSQGDLFAQPQLVSDKKNSSNTPHFYQLADTPMAQQLLLQSLLQQTEVCFDTETTNVDALEAELVGISFCWAAHKGHYLPFPKEKEAATKLIEQFRPFFENEQIAKVGQNLKYDLKVLQNYGVEVQGALFDTMIAHYLLNPDMRHNMDILSETYLNYTPIAIESLIGKGKAQRSMRTVPIDEVKEYAVEDADVTWQLKNVFQSQMPQVNAQKIYTDLEAPLIKVLAAMEREGVNLDVDFLKEYSKTLDADIAQLETAIAQQAGETFNLASPKQLGDILFEKLKIDSKPKKTKTGQYATSEEVLAPFAAKHKIVADILEWRQVQKLKSTYVDALPLEVNKNTGRVHTTYMQTVAATGRLSSNNPNLQNIPIRTPRGQQVRKAFIARNPDYVLLSADYSQIELRIIAALSEEHNMIESFLRNEDIHRSTAAKVFNVPLEEVTREQRSHAKTVNFGIIYGVSAFGLSAQTDLSRSESKELIDTYYATYPNLRNYINKQIEFAREHGYVETILGRRRYLPDIHSHNQVVRGGAERNAVNAPIQGSAADIIKIAMIRIHNQLQAQKLQTRMLLQVHDELVFDVPKTELELVKPLIKDAMENAFTLAVPLVADLGVGDNWLDAH
>NZ_CP022383.1|WP_095901644.1|1970974_1972060_+|DUF1016-family-protein
MKEDFQHIIQLIQNAKERVYVKANSELVALYFNVGNILSDKISKGVWGDKTMTALADFIHTKMPNLSGFNRRGLYRMKQFYEIHDVNSEVFKLWEELVFSIERAEKQDVLIVSPPVTQFQKHQFYMENVLLKVSWSQHLDIFSKLKKPEEILFYLLETITEKWTRAELQRQLKTATYERTLLAKQATSPIIQKMDNIQTLFKDPYVFEFLDLPDNHSEKEFEKAIVLNLQKFILEIGKGFTYMGEQYRLQVGNKDYYTDLLFYHRDLQCLVLFELKIQDFEPEFLGKLNFYLEALDRDVKRPHENPSIGILLCKGKDTEVVEYSLARNPSPTIIAEYQTKLIDKQLLINKLNQLLAIFQNP
>NZ_CP022383.1|WP_095901645.1|1972065_1972590_+|methyltransferase
MYKVLPKKRYQKTLSILKRYAPQGSTILDIGVENPFSTIMKEEGYTVLNTTGQDLDFEANTLQNFQADFTTALEILEHLVNPLAVLQNIPTDKILITVPLRLWFAKAYRNTADPRDCHYHEFEDWQLDMLVEKAGFRIVYREKWTHPVKKLGLRPLLRYFTNRYYAVVAERINK
>NZ_CP022383.1|WP_095901646.1|1972618_1973902_+|Na+/H+-antiporter-NhaC-family-protein
MTKKNSIVSIIPLLIFVAIFLGSGIYFDNFYSLPAPIIALFAVVVALLIYRAPLNQKIALFFRGAGNSNVLQMCVIALLAGAFASVAKASGSIDSIVNMGMYYISPEYFPVGIFVIASFLSFATGTSVGTIMTLSPIVFNLAFESHSDTALIGAALLCGAMFGDNLSLISDTTIAATQSLGCKMSDKMKTNAQIALPVALLSAVILFFIGNPGATTFTHSEAYHTFNPLLILPYVAVVVISLFGVNVFVSLFLGVVFSGVMGLVYGKFSFLDLTQHTYKGFMDMADIFFLYFIIGGLAFLVERFGGIQFLMNLVAKRIKSGASALLGMGFLVTVADVCVANNTVAILIVSKISKRIAEQFQIPLRNAASVLDIFSCYAQGLIPYGAQVIALYQFAHTMDYLSLVGYSVYLHLLLIATLVYIQVRGKK

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Crispr_ID: NZ_CP022383_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022383_3

2974219-2974849

Orphan

Consensus_repeat	Method
TCTATTACNATNCCTAATAGTGTAA	CRT

9 spacers

The CRISPR arrays of NZ_CP022383_3

>merge|NZ_CP022383|3|2974219-2974849|CRT
TCTATTACAATCCCTAATAGTGTAACAAGTATTGGGAAAGGTGCTTTTTCTCAATCTGGATTAACATCTATTACTATTCCTAATAGTGTAATAACCATAGGAGCAGGTGCTTTCTCATACTGCGAATCTTTGAAGTCTATTACTATCCCAAATAGTGTAATAAATATTGAAGGTTCAGCTTTTTCTGGATCTGGATTGACCTCTATTACTATCCCTAATAGTGTAACAAAAATTGAAGATTGGACTTTTTCATATTGTAGTGATTTACAATTTGTTACGATTCCTGATGGTATAAAAAGTATTGGAGAAAGAGCTTTTGAAAGATGCAGGAAATTAACATCTATTACAATTCCTAATAGTGTAACAAGTATTGGGGAGAGTGCTTTTTCTTATTCTGGATTAACCTCTATTAACATTCCTAATAGTGTAACAGATATAGGTAAAACAGCTTTTGAATATTGCCATTTAGGCGCTATATCTATGCCTAATAGTGTAATAAATATCGGAGAGGGAGCTTTTTCTTATTCTGGATTAACTTCTATTAACATTCCTAATAGTGTAACAAGAATTATGAAAGACACTTTTAAGGGCTGTGGCTTAATGACATCCATCGTTATTCCTAATAATGTTA

>NZ_CP022383|3|2|2974219-2974849|CRT
TCTATTACAATCCCTAATAGTGTAA	CAAGTATTGGGAAAGGTGCTTTTTCTCAATCTGGATTAACA
TCTATTACTATTCCTAATAGTGTAA	TAACCATAGGAGCAGGTGCTTTCTCATACTGCGAATCTTTGAAG
TCTATTACTATCCCAAATAGTGTAA	TAAATATTGAAGGTTCAGCTTTTTCTGGATCTGGATTGACC
TCTATTACTATCCCTAATAGTGTAA	CAAAAATTGAAGATTGGACTTTTTCATATTGTAGTGATTTACAA
TTTGTTACGATTCCTGATGGTATAA	AAAGTATTGGAGAAAGAGCTTTTGAAAGATGCAGGAAATTAACA
TCTATTACAATTCCTAATAGTGTAA	CAAGTATTGGGGAGAGTGCTTTTTCTTATTCTGGATTAACC
TCTATTAACATTCCTAATAGTGTAA	CAGATATAGGTAAAACAGCTTTTGAATATTGCCATTTAGGC
GCTATATCTATGCCTAATAGTGTAA	TAAATATCGGAGAGGGAGCTTTTTCTTATTCTGGATTAACT
TCTATTAACATTCCTAATAGTGTAA	CAAGAATTATGAAAGACACTTTTAAGGGCTGTGGCTTAATGACA
TCCATCGTTATTCCTAATAATGTTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022383.1\|WP_095902304.1\|2972491_2973082_+\|collagen-like-protein	unknown	unknown	gnl\|CDD\|189968
NZ_CP022383.1\|WP_095902311.1\|2983333_2984431_-\|Nif3-like-dinuclear-metal-center-hexameric-protein	unknown	unknown	gnl\|CDD\|376614
NZ_CP022383.1\|WP_095902307.1\|2976152_2978093_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|227112
NZ_CP022383.1\|WP_095902298.1\|2964479_2965613_-\|glycosyl-hydrolase-family-5	unknown	unknown	gnl\|CDD\|376532
NZ_CP022383.1\|WP_002678688.1\|2978975_2979959_-\|polyprenyl-synthetase-family-protein	unknown	unknown	gnl\|CDD\|223220
NZ_CP022383.1\|WP_095902302.1\|2969203_2970619_+\|oligosaccharide-flippase-family-protein	unknown	unknown	gnl\|CDD\|240533
NZ_CP022383.1\|WP_002678807.1\|2962797_2963730_+\|malate-dehydrogenase	unknown	unknown	gnl\|CDD\|133424
NZ_CP022383.1\|WP_095902303.1\|2970631_2971051_-\|rRNA-maturation-RNase-YbeY	unknown	unknown	gnl\|CDD\|272871
NZ_CP022383.1\|WP_002678860.1\|2984427_2984976_-\|protein-tyrosine-phosphatase	unknown	unknown	gnl\|CDD\|350378
NZ_CP022383.1\|WP_095902301.1\|2967826_2969191_+\|DNA-repair-protein-RadA	unknown	unknown	gnl\|CDD\|236994
NZ_CP022383.1\|WP_002678914.1\|2982542_2983331_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224495
NZ_CP022383.1\|WP_095902297.1\|2963868_2964462_+\|M15-family-metallopeptidase	unknown	unknown	gnl\|CDD\|350617
NZ_CP022383.1\|WP_095902308.1\|2978162_2978876_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379448
NZ_CP022383.1\|WP_095902309.1\|2980009_2981977_-\|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein	unknown	unknown	gnl\|CDD\|273520
NZ_CP022383.1\|WP_095902299.1\|2965746_2966919_+\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|277368
NZ_CP022383.1\|WP_002678703.1\|2971054_2971270_-\|DUF2892-domain-containing-protein	unknown	unknown	gnl\|CDD\|378561
NZ_CP022383.1\|WP_095902312.1\|2984972_2985635_-\|RNA-methyltransferase	unknown	unknown	gnl\|CDD\|349965
NZ_CP022383.1\|WP_095902310.1\|2981981_2982353_-\|ribosome-silencing-factor	unknown	unknown	gnl\|CDD\|376779
NZ_CP022383.1\|WP_095902306.1\|2975410_2975938_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224677
NZ_CP022383.1\|WP_095902300.1\|2966939_2967818_+\|glucose-1-phosphate-thymidylyltransferase-RfbA	unknown	unknown	gnl\|CDD\|130274

Protein	Function_ID	Function_description	E-value
NZ_CP022383.1\|WP_095902304.1\|2972491_2973082_+\|collagen-like-protein	gnl\|CDD\|189968	pfam01391, Collagen, Collagen triple helix repeat (20 copies). Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.	4.86159e-10
NZ_CP022383.1\|WP_095902311.1\|2983333_2984431_-\|Nif3-like-dinuclear-metal-center-hexameric-protein	gnl\|CDD\|376614	pfam01784, NIF3, NIF3 (NGG1p interacting factor 3). This family contains several NIF3 (NGG1p interacting factor 3) protein homologs. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown.	2.82298e-45
NZ_CP022383.1\|WP_095902307.1\|2976152_2978093_-\|TonB-dependent-receptor	gnl\|CDD\|227112	COG4771, FepA, Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and metabolism].	4.38961e-61
NZ_CP022383.1\|WP_095902298.1\|2964479_2965613_-\|glycosyl-hydrolase-family-5	gnl\|CDD\|376532	pfam01341, Glyco_hydro_6, Glycosyl hydrolases family 6.	6.63506e-46
NZ_CP022383.1\|WP_002678688.1\|2978975_2979959_-\|polyprenyl-synthetase-family-protein	gnl\|CDD\|223220	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism].	1.49566e-83
NZ_CP022383.1\|WP_095902302.1\|2969203_2970619_+\|oligosaccharide-flippase-family-protein	gnl\|CDD\|240533	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli Wzx and related proteins from other gram-negative bacteria are thought to act as flippases, assisting in the membrane translocation of lipopolysaccharides including those containing O-antigens. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	2.4532e-28
NZ_CP022383.1\|WP_002678807.1\|2962797_2963730_+\|malate-dehydrogenase	gnl\|CDD\|133424	cd01339, LDH-like_MDH, L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	1.2896e-150
NZ_CP022383.1\|WP_095902303.1\|2970631_2971051_-\|rRNA-maturation-RNase-YbeY	gnl\|CDD\|272871	TIGR00043, Endoribonuclease_YbeY, rRNA maturation RNase YbeY. This metalloprotein family is represented by a single member sequence only in nearly every bacterium. Crystallography demonstrated metal-binding activity, possibly to nickel. It is a predicted to be a metallohydrolase, and more recently it was shown that mutants have a ribosomal RNA processing defect. [Protein synthesis, Other].	1.87562e-31
NZ_CP022383.1\|WP_002678860.1\|2984427_2984976_-\|protein-tyrosine-phosphatase	gnl\|CDD\|350378	cd14529, TpbA-like, bacterial protein tyrosine and dual-specificity phosphatases related to Pseudomonas aeruginosa TpbA. This subfamily contains bacterial protein tyrosine phosphatases (PTPs) and dual-specificity phosphatases (DUSPs) related to Pseudomonas aeruginosa TpbA, a DUSP that negatively regulates biofilm formation by converting extracellular quorum sensing signals and to Mycobacterium tuberculosis PtpB, a PTP virulence factor that attenuates host immune defenses by interfering with signal transduction pathways in macrophages. PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides, while DUSPs function as protein-serine/threonine phosphatases (EC 3.1.3.16) and PTPs.	3.58444e-27
NZ_CP022383.1\|WP_095902301.1\|2967826_2969191_+\|DNA-repair-protein-RadA	gnl\|CDD\|236994	PRK11823, PRK11823, DNA repair protein RadA; Provisional.	0
NZ_CP022383.1\|WP_002678914.1\|2982542_2983331_-\|hypothetical-protein	gnl\|CDD\|224495	COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only].	1.88175e-12
NZ_CP022383.1\|WP_095902297.1\|2963868_2964462_+\|M15-family-metallopeptidase	gnl\|CDD\|350617	cd14840, D-Ala-D-Ala_dipeptidase_Aad, D-Ala-D-Ala dipeptidase (includes Lactobacillus plantarum Aad peptidase). D-Ala-D-Ala dipeptidase (also known as D-alanyl-D-alanine dipeptidase vanX; VanX; EC 3.4.13.22) is a Zn2+-dependent enzyme that mediates resistance to the antibiotic vancomycin in Enterococci and other bacteria (both Gram-positive and Gram-negative). It is part of a gene cluster that affects cell-wall biosynthesis. The operon triggers the termination of peptidoglycan precursors by D-Ala-(R)-lactate instead of D-Ala-D-Ala dipeptides. The enzyme is stereospecific, as L-Ala-L-Ala, D-Ala-L-Ala and L-Ala-D-Ala are not substrates. This subfamily includes Lactobacillus Aad peptidase and belongs in the MEROPS peptidase family M15, subfamily D.	2.86535e-96
NZ_CP022383.1\|WP_095902308.1\|2978162_2978876_-\|hypothetical-protein	gnl\|CDD\|379448	pfam14064, HmuY, HmuY protein. HmuY is a novel heme-binding protein that recruits heme from host carriers and delivers it to its cognate outer-membrane transporter, the TonB-dependent receptor HmuR. This family of proteins is found in bacteria. Proteins in this family are typically between 214 and 278 amino acids in length.	6.08646e-28
NZ_CP022383.1\|WP_095902309.1\|2980009_2981977_-\|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein	gnl\|CDD\|273520	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NZ_CP022383.1\|WP_095902299.1\|2965746_2966919_+\|metallophosphoesterase	gnl\|CDD\|277368	cd07425, MPP_Shelphs, Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	5.0913e-39
NZ_CP022383.1\|WP_002678703.1\|2971054_2971270_-\|DUF2892-domain-containing-protein	gnl\|CDD\|378561	pfam11127, DUF2892, Protein of unknown function (DUF2892). This family is conserved in bacteria. The function is not known.	4.42024e-09
NZ_CP022383.1\|WP_095902312.1\|2984972_2985635_-\|RNA-methyltransferase	gnl\|CDD\|349965	cd18092, SpoU-like_TrmH, SAM-dependent tRNA methylase related to TrmH. TrmH catalyzes the transfer of the methyl group from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of the ribose of the universally conserved guanosine 18 (G18) position in tRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	6.53831e-78
NZ_CP022383.1\|WP_095902310.1\|2981981_2982353_-\|ribosome-silencing-factor	gnl\|CDD\|376779	pfam02410, RsfS, Ribosomal silencing factor during starvation. This family is expressed by almost all bacterial and eukaryotic genomes but not by archaea. Its function is to down-regulate protein synthesis under conditions of nutrient shortage, and it does this by binding to protein L14 of the large ribosomal subunit, thus acting as a ribosomal silencing factor (RsfS) by blocking the joining of the ribosomal subunits. This family is structurally homologous to nucleotidyltransferases.	3.23641e-39
NZ_CP022383.1\|WP_095902306.1\|2975410_2975938_+\|hypothetical-protein	gnl\|CDD\|224677	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism].	0.00528962
NZ_CP022383.1\|WP_095902300.1\|2966939_2967818_+\|glucose-1-phosphate-thymidylyltransferase-RfbA	gnl\|CDD\|130274	TIGR01207, Glucose-1-phosphate_thymidylyltransferase_1, glucose-1-phosphate thymidylyltransferase, short form. Alternate name: dTDP-D-glucose synthase homotetramer This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	0

>NZ_CP022383.1|WP_095902304.1|2972491_2973082_+|collagen-like-protein
MKRSIIITVFCACVAFLFWQCNKESVVEKVEYQRGNIVHYGSGAPSSTIGEIGDYYFDLSVSDLYGAKTESGWGDPVSLKGDRGERGEQGEQGEKGEKGEAGDKGEKGDKGAQGDKGLTGDKGEQGDKGLVGGKGEKGEKGDEGAPTTRIHLGEGEPRSYIGKEGDWYINTRTGVLYGPKKINGIVGKKLYFQILK
>NZ_CP022383.1|WP_002678703.1|2971054_2971270_-|DUF2892-domain-containing-protein
MKRNISTLDKNIRLLIIVITAILGYFNEFSITIASVLSGVSILLLVTILINFSPIYALLGISTYKPKEKNS
>NZ_CP022383.1|WP_095902303.1|2970631_2971051_-|rRNA-maturation-RNase-YbeY
MTSFFNETPFVFPYNKNSVKCWVKSVAKCEGKEAGNINYIFCDDEYLHKINVEYLQHDTLTDIITFDYTEGKVLHSDIYISVERVKENAEIFKVPFQRELLRVLAHGLLHLCGYKDKTPKDSALMRQKEEEMMLLFDQL
>NZ_CP022383.1|WP_095902302.1|2969203_2970619_+|oligosaccharide-flippase-family-protein
MLRKLFKDTIIYGIATVLPRVLTLLLTRLYVNKLDTADFGIYSGLFVYLILGNVLLSYGMETAFFRFMNKGEQKKKVQSTALTSLTISSLFFLLIAYLLRHFIASWLNYDVQYIAFAIYILVLDALVVIPFAWLRNKGKAKLYAMVKIGNTALNLALNIYYLNYLSAENLATNGGVYYIFLANVIASLATFIVLLPIYLKIRFKFYYPLWKEMMIYAFPVLLAGIAFAVNEGFDRVFLRMLLPADTADGTIGIYSACYKMGVFMNLFVTAYKLGIEPFFFSSAQDKNAPKTYARITEYFIVCGGFILLFITVFTDVFKLILIPNKAYWDALWIVPIILLANLCLGIYHSLSVWYKVTDRTSFGAIVSLIGMAITVVFNFALIPWLSYKGAALATLITYAAMMSISYYYGQKYYPIPYKKRKIKIFLGMSVLFSFINFYAFGNSIYIGILFLLIYGYLASFAIKLKALRSKA
>NZ_CP022383.1|WP_095902301.1|2967826_2969191_+|DNA-repair-protein-RadA
MAKLKTAYFCQNCGAQYSKWQGQCYTCKQWNTIVEEVVQKDTAPAWQEKESPIKNKAPKYIPISQIDTQQEARLNSNNHELNNVLGGGIVPGSVTLLGGEPGIGKSTLLLQIALNLPYRTLYVSGEESEKQIKMRADRIPHKLDNCFILTETKTQNIFQQIKELLPEIVIIDSIQTLQSDYIEASAGSISQIRECTSELIKFAKTTHTPVILIGHITKDGQIAGPKILEHMVDTVLQFEGDRNHVYRILRSLKNRFGSTSELGIYEMLSNGLREVNNPSEILISKTDETISGTSIAATLEGMRPLMIEIQALVSTAVYGTPQRSTTGFNAKRLNMLLAVLEKRAGFRLGAKDVFLNITGGITIDDPATDLGVAMAILSSNEDIAIDKDVCFAGEVGLGGEIRPVQRVEQRITEAEKLGFNTIFVSKYNKIALKNTKIKVIKVAKIEDAIQELFG
>NZ_CP022383.1|WP_095902300.1|2966939_2967818_+|glucose-1-phosphate-thymidylyltransferase-RfbA
MKGIILAGGSGTRLYPITKGVSKQLLPIYDKPMIYYPLSVLMLSGIREILVISTPQDLPGFERLLGDGSDFGIRLSYAEQPSPDGLAQAFIIGEEFIGDDDVCLVLGDNIFYGQSFSKMLSQAVENVTKERKATVFGYYVKDPERYGVAEFDNAGNVLSIEEKPAHPKSNYAVVGLYFYPNKVVKVAKNIKPSARGELEITTVNQVFLNDGELKVQLLGRGFAWLDTGTHDSLSEASNFVETLEKRQGLKISCLEEIAYRKGWITAEKLQELAKPMLKNQYGQYLLQIINNG
>NZ_CP022383.1|WP_095902299.1|2965746_2966919_+|metallophosphoesterase
MKKTYITFLAFLCCFVLGNNWLQAQELVPILSQARLHKDNSTSGFDGPYIFYTDKGIVVKQVGEKKGVVAPSIQTFTKDIKGKKFTAQLSEKESFSFKIKKELKNETAVYNMPEKLIAISDIEGEFEAFKQFLIANGVMNTKYQWKYGKGHLVTVGDFFDRGLWVTQTLWLIYHLEQQAEKAGGKVHFILGNHDLMNMNNDFRYVRKKYFQNASLLQDEYLHFYKPNTELGRWLATKNIVEKIGDYVFVHAGISIEIANLGLTVQELNDKARDYYFDNLKARKRKDSLYSILYQFGISPTWYRGWGKQTIDITEAETILERWQVGKFVIGHTLHSEVTYLMNKHVIDLDVAHAKGVVQGLLIENGNEYKVDKQGNKTAIIENASIPEDDD
>NZ_CP022383.1|WP_095902298.1|2964479_2965613_-|glycosyl-hydrolase-family-5
MNKLVSLVAFLWLIIACEKSGEDNDPSTQTSTTQSTTTQTPTSPPITPPTPPQPPQNNIPYDWDFYLEPSRLNAVKKEPNVELKKLYYQVYGTPCGGWYDGMSPNSEKNNGWLKNFVEGAERAHKTPIVVLYGIPERDCGSFSKGGHPNAASYKGWIDRVSAIIGQRRAVVIIEPDAINYCGHKKGSAKYNERAELLRYAAEKLNNNNPNVASYIHAGNGPLVTNNTEAVATAIIDGGLKYMRGFALNVSGLGGTAEEQAAAEKFVTYLATKGFKNVHYVIDTGRSGINRPKHQNANAPYNSCNNFNAALGPRSTTKTTGAHADAYLWINGGGGSDGECNMGAPAAGQPYPEYTRALINNAIRVKSIQILELPNDLK
>NZ_CP022383.1|WP_095902297.1|2963868_2964462_+|M15-family-metallopeptidase
MKYILAFFVTFIATAQQTDFVLLKSLSSDFVFDMKYATPDNFLKQAVYECGECYLRKKTAEALVKANEEFKTLGYRIKLFDCYRPLEVQKKMWKILPGTHYVANPAKGSKHNRGAAVDLTLVDKDGKELDMGTPFDFFGEKAHHTCTTLPKKVLENRKLLKDILNKYNFKSIYSEWWHYEYRPEMQSKVENFQWQCE
>NZ_CP022383.1|WP_002678807.1|2962797_2963730_+|malate-dehydrogenase
MKVTVVGAGAVGASCAEYIAIKDFASEVVLIDIKEGFAEGKAMDLMQTASLNGFDTRITGVTNDYSKTAGSDVAVITSGIPRKPGMTREELIGTNANIVKSVVEQLVKYSPNVIVIVVSNPMDTMAYLVHKATKLPKNHIIGMGGALDSARFKYRLAEALNSPISDVDGMVIAAHSDSGMLPLTRLASYRGVPVTEFLSADRLNQVAEDTKVGGATLTKLLGTSAWYAPGAAVSALVQAIACDQKKLFPCSVLLEGEYGQKDVCVGVPVIIGRDGVEKIVEVKLNDAEKAKFAESTEAVREVNKALASVL
>NZ_CP022383.1|WP_095902306.1|2975410_2975938_+|hypothetical-protein
MKVIHIQGAQNTGKTTLCNRIDEWLLNNRIYELQQLISSRKSGQNSSIKEIIKIEVIKKILPHNDFYAVYDIQFSTGGNKRVIINTLSDCNTITEFENFYNNNKNNGYDVFITTIRNGNTPQKVIKEFYEKELKSINLPTKPNGIINLNKNPITNVVESYAMLYYEFISLFEKLI
>NZ_CP022383.1|WP_095902307.1|2976152_2978093_-|TonB-dependent-receptor
MQKFYIAAFIFLYSSLIFAQNDTLQNDLINLKEVIVTATRAQKNLKNVPITVQVVTAEDIRKSQATNFQSFLETEFAGINFTYDGGMPNINMMGFGGKYVLFLIDGERMAGETFDNIDYNRINLEDIERIEIIKGASSSLYGSNALGGVINIITKNAKKSFEGDLSYQYETIESHKANIGIGSKQRWGNIRLTSFYNFREPYLLKDREPLITYKNGVAEPSPKSELNIAGFTTYGVTPKLSFNLSPKTDLTLTPNYYFSERNQGDRDAERKRERYYNYTMSAKLNTALIESKKLSLSGAFDRYDKFNYFPLLKEKEKNYENTLARAGAQYNQSLWTKHSLVAGAEIFSDELLSFRFNETGTEAKENAQNYTLFTQQEWTLSPAFTLVTGVRIDYHSLFKEHFTYRLSGMLKVESFTFRGGFSSGFRSPTLKELYTNWFHPWGGGFQIIGNKDLKPESSNNFNFSVDFDSPKVNITAMTQLSLMKDKIDYRWTVASDTIRYINFKDKTQIISSELAASYRPTQALRFKASYAYYYISNSANENRPHTLTLKAEYIPKHNALYIPNIVFSGKYVSATRIHETDTSNNQLYTYYEPYSIWQLQVFSKLPYHLTLTAGIDNLFNYITPTTSFYSSISKGRTYSLGLKWNY
>NZ_CP022383.1|WP_095902308.1|2978162_2978876_-|hypothetical-protein
MRLQFLAPAIIAGLMMFTTSCSKDDKKTEAPKLPYKEQKVDASSYDKWVYFSFENGVVTSTTATPTTTDWDIAFNRYSVRTNSGTSGSGNGGALTTNETDWDKVATASSTASFTVDGSIYVFERGQNNQGGLGTTNASRVISGGHGENFWNMISRMPNVAKIDKSSIVHNNGWLTMDYKPNGKQLAPSYTYNNWVYIVKTPAGKFVKIQLTDYKNAKDETGYITFKYQIANDKNEFK
>NZ_CP022383.1|WP_002678688.1|2978975_2979959_-|polyprenyl-synthetase-family-protein
MKITAQIKEPIREEMELFEQKFRNSMSSKVALLNRITYYIVNRKGKQMRPMFVFLVAKMLSDDSKVSERTYRGASVIELIHTATLVHDDVVDDSNKRRGFFSINALWKNKIAVLVGDYLLSKGLLLSIDNGDFDLLRIISVAVREMSEGELLQIEKARRLDIVEDVYYEIIRQKTATLIAACCAMGACSVQPEQPELIEKMRLFGEYIGMAFQIKDDLFDYTEDAIGKPTGIDIKEQKMTLPLIYVLNTCTEKEKQWLINSVKKYNKDKKRVKEVISFVKTHNGLEYATAKMKEFQQKALNILNDFPASSYKEALTLMVNYVIDRKI
>NZ_CP022383.1|WP_095902309.1|2980009_2981977_-|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein
MSDNKSNGNRFSAYWLYGVLLLILIGFNYYSGASFWSQPKEIPQSKFEEYLSNGDVAKIIILNRKEANVYLTEDALKKEEHKEVKPTGNSLMQGANAGEVPQYRFELGDLSNFENRFDQIVKDNNLSTTRENKTQQNVIGDLLFTLLPIIVVIGLWIFVMRRMAGAGGPGGIFSIGKSKARMFDEKKETRVTFQDVAGLEGAKEEVQEIVDFLKNPDKYTSLGGKIPRGALLVGPPGTGKTLLAKAVAGEAQVPFFSLSGSDFVEMFVGVGASRVRDLFKQAKEKSPSIIFIDEIDAIGRARGKNAMTGANDERENTLNQLLTEMDGFGSHTNVIVLAATNRADILDKALMRAGRFDRQIYVELPNLNERKQIFQVHLRPIKTAETLDIDFLAKQTPGFSGADIANVCNEAALIAARKGKTAVSKQEFLDAVDRIVGGLEKKTKILTPEEREAIAFHEAGHATVSWLLEHAAPLVKVTIVPRGQSLGAAWYLPEERQIVRTEQILDEMCAALGGRAAEKVVFNKISTGALSDLEKVTKQARAMVTIYGLNEKIGNLTYYDSAQSDYSFTKPYSEKTAHLIDEEISKIIEEQYQRAIDILTENKDKLTTLANLLLDREVIFRDDLENIFGKRKFKDAHNSNEEETPLKTENTSPTE
>NZ_CP022383.1|WP_095902310.1|2981981_2982353_-|ribosome-silencing-factor
MNKEISSNQLISNIIAGIEKVKGTDITIMDLREVENTVCDYFILCNGSSNTQVSAISGAIQKIVSQADGHQHPWHVEGEANAEWILIDYVDVVVHIFQTKVREHYDLEGLWGDAKFINLETNY
>NZ_CP022383.1|WP_002678914.1|2982542_2983331_-|hypothetical-protein
MAQKVDITVEEKLRALYDLQLIDSKIDELQYTRGELPLEVSDLEDEVEGLKKRHAKFKEELDALQAGIAEKKATIEEAKALIKKYTTQQKNVRNNREYTSLSKEIEFQELEVQLAEKRIKEGKAQVDQKKEAIKQVDERKAQRDAHLKHKKAELNSVLAETEKEEAFLKEKAEEYAAKIEDRLLKAYQRIRSSVMNKLAVVPIQRGASGGSFFTIPPQVQVEIASRKKIITDEHSGRILVDAALAEEEKEKMEALFKSFKAS
>NZ_CP022383.1|WP_095902311.1|2983333_2984431_-|Nif3-like-dinuclear-metal-center-hexameric-protein
MKITDIIQELEKLAPLQYAEGFDNVGLLVGDANAEVKGVLITLDTLEAVVDEAIAKKCNLIVSFHPIIFSGLKSLTGKNYVERVVMKAIQHQIAIYSMHTALDNQFLGVNASICNRLELQNRRILIPQPHTIQKLITYVPKSDAENLRKALFVAGAGNIGNYAECSFNLEGKGTYKGNEESHPTIGEPNVFHTEDETQIGVIFPKHLQRQILQALRQNHPYEEVAFEIYTLENEHQHIGMGMIGELNKAMSEKVFLAYLKERMQVSVVRHSALLGKDVKKVAVLGGSGAFAIENAKRAKADVYITADLKYHEFFKAEGQILLADIGHFESEQYIKSLLFDYLSKIFPTFALSISNVDTNPIKYYS
>NZ_CP022383.1|WP_002678860.1|2984427_2984976_-|protein-tyrosine-phosphatase
MKKTLLICFILFALLPLWSQHKATLIHADANLYKVDSLLYRSEQLVTEDKAIIKNIPIKSIVNLRYFTRSGDKKIFNASDNIKLINHPLLTWRIKAPEIAQTLKIIREHQKQGAVLIHCYHGADRTGIMVAMYRIIYHNWTIEQAKKEMLNGPYGYHSVWKNLEALFTESTVKEVRKHLGMQ
>NZ_CP022383.1|WP_095902312.1|2984972_2985635_-|RNA-methyltransferase
MNDKLLSYLERFITEERKERFLEIIAQRTNHFTVAMEDVFQMHNTSAVVRTCEVFGVQQAHSIEGRFGKRLDAKIAMGAQKWVDVFRYNDTQSCIDSLRAQGYQIVATTPHKDAYFLNDFDITKKSAFFFGTEKEGLSAQVLSQADTFLKIPMVGFTESLNISVAVAIVLQQLTDKLRRSEVAWQLSDNERLNTLIHWTKQSIRNVDDVLTRYEEIKNTL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP022383_1	1.6\|1574477\|30\|NZ_CP022383\|CRISPRCasFinder,PILER-CR	1574477-1574506	30	NC_031020	Morganella phage vB_MmoM_MP1, complete genome	126618-126647	6	0.8
NZ_CP022383_1	1.3\|1574249\|30\|NZ_CP022383\|CRISPRCasFinder,PILER-CR	1574249-1574278	30	MF001355	Proteus phage PM2, partial genome	130383-130412	7	0.767
NZ_CP022383_1	1.3\|1574249\|30\|NZ_CP022383\|CRISPRCasFinder,PILER-CR	1574249-1574278	30	KP890823	Proteus phage vB_PmiM_Pm5461, complete genome	142786-142815	7	0.767
NZ_CP022383_1	1.3\|1574249\|30\|NZ_CP022383\|CRISPRCasFinder,PILER-CR	1574249-1574278	30	NC_019763	Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.01, complete sequence	74100-74129	7	0.767
NZ_CP022383_1	1.3\|1574249\|30\|NZ_CP022383\|CRISPRCasFinder,PILER-CR	1574249-1574278	30	NC_019763	Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.01, complete sequence	124467-124496	7	0.767
NZ_CP022383_1	1.3\|1574249\|30\|NZ_CP022383\|CRISPRCasFinder,PILER-CR	1574249-1574278	30	NC_019731	Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.03, complete sequence	12069-12098	7	0.767
NZ_CP022383_1	1.3\|1574249\|30\|NZ_CP022383\|CRISPRCasFinder,PILER-CR	1574249-1574278	30	NC_019731	Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.03, complete sequence	102215-102244	7	0.767
NZ_CP022383_1	1.3\|1574249\|30\|NZ_CP022383\|CRISPRCasFinder,PILER-CR	1574249-1574278	30	NC_017725	Borreliella garinii BgVir plasmid cp26, complete sequence	8969-8998	7	0.767
NZ_CP022383_1	1.4\|1574325\|30\|NZ_CP022383\|CRISPRCasFinder,PILER-CR	1574325-1574354	30	NZ_CP011023	Bacillus pumilus strain SH-B9 plasmid pSHB9, complete sequence	60389-60418	7	0.767
NZ_CP022383_1	1.2\|1574173\|30\|NZ_CP022383\|CRISPRCasFinder	1574173-1574202	30	NZ_CP013139	Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence	502235-502264	8	0.733
NZ_CP022383_1	1.3\|1574249\|30\|NZ_CP022383\|CRISPRCasFinder,PILER-CR	1574249-1574278	30	NZ_CP039041	Piscirickettsia salmonis strain Psal-072 plasmid unnamed1, complete sequence	134970-134999	8	0.733
NZ_CP022383_1	1.3\|1574249\|30\|NZ_CP022383\|CRISPRCasFinder,PILER-CR	1574249-1574278	30	NC_006128	Borreliella bavariensis PBi plasmid cp26, complete sequence	8983-9012	9	0.7
NZ_CP022383_1	1.7\|1574553\|31\|NZ_CP022383\|CRISPRCasFinder,PILER-CR	1574553-1574583	31	KF114880	Leptospira phage LinZ_10, complete genome	86241-86271	9	0.71
NZ_CP022383_1	1.7\|1574553\|31\|NZ_CP022383\|CRISPRCasFinder,PILER-CR	1574553-1574583	31	KF114879	Leptospira phage LbrZ_5399, complete genome	32076-32106	9	0.71
NZ_CP022383_1	1.7\|1574553\|31\|NZ_CP022383\|CRISPRCasFinder,PILER-CR	1574553-1574583	31	KX656785	UNVERIFIED: Leptospira phage Lin_34, complete genome	21420-21450	9	0.71

1. spacer 1.6|1574477|30|NZ_CP022383|CRISPRCasFinder,PILER-CR matches to NC_031020 (Morganella phage vB_MmoM_MP1, complete genome) position: , mismatch: 6, identity: 0.8

agattagacaatattctgcaccat-tatatg	CRISPR spacer
tatttagacaataatctgcaccatctattt-	Protospacer
 . ********** ********** *** *

2. spacer 1.3|1574249|30|NZ_CP022383|CRISPRCasFinder,PILER-CR matches to MF001355 (Proteus phage PM2, partial genome) position: , mismatch: 7, identity: 0.767

ctatggaaaacacttacttttttaaagcca	CRISPR spacer
ttagggaaaccacttacttttttaacttta	Protospacer
.** ***** ***************  ..*

3. spacer 1.3|1574249|30|NZ_CP022383|CRISPRCasFinder,PILER-CR matches to KP890823 (Proteus phage vB_PmiM_Pm5461, complete genome) position: , mismatch: 7, identity: 0.767

ctatggaaaacacttacttttttaaagcca	CRISPR spacer
ttagggaaaccacttacttttttaacttta	Protospacer
.** ***** ***************  ..*

4. spacer 1.3|1574249|30|NZ_CP022383|CRISPRCasFinder,PILER-CR matches to NC_019763 (Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.01, complete sequence) position: , mismatch: 7, identity: 0.767

ctatggaaaacacttacttttttaaagcca	CRISPR spacer
cgcaggaaaacagttacttttataaagact	Protospacer
*   ******** ******** ***** *

5. spacer 1.3|1574249|30|NZ_CP022383|CRISPRCasFinder,PILER-CR matches to NC_019763 (Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.01, complete sequence) position: , mismatch: 7, identity: 0.767

ctatggaaaacacttacttttttaaagcca	CRISPR spacer
cgcaggaaaacagttacttttataaagact	Protospacer
*   ******** ******** ***** *

6. spacer 1.3|1574249|30|NZ_CP022383|CRISPRCasFinder,PILER-CR matches to NC_019731 (Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.03, complete sequence) position: , mismatch: 7, identity: 0.767

ctatggaaaacacttacttttttaaagcca	CRISPR spacer
cgcaggaaaacagttacttttataaagact	Protospacer
*   ******** ******** ***** *

7. spacer 1.3|1574249|30|NZ_CP022383|CRISPRCasFinder,PILER-CR matches to NC_019731 (Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.03, complete sequence) position: , mismatch: 7, identity: 0.767

ctatggaaaacacttacttttttaaagcca	CRISPR spacer
cgcaggaaaacagttacttttataaagact	Protospacer
*   ******** ******** ***** *

8. spacer 1.3|1574249|30|NZ_CP022383|CRISPRCasFinder,PILER-CR matches to NC_017725 (Borreliella garinii BgVir plasmid cp26, complete sequence) position: , mismatch: 7, identity: 0.767

ctatggaaaacacttacttttttaaagcca	CRISPR spacer
taacagaaaacacttccttttttaaatcta	Protospacer
. *..********** ********** *.*

9. spacer 1.4|1574325|30|NZ_CP022383|CRISPRCasFinder,PILER-CR matches to NZ_CP011023 (Bacillus pumilus strain SH-B9 plasmid pSHB9, complete sequence) position: , mismatch: 7, identity: 0.767

gatttttgccttacttatgaccaacaaaga	CRISPR spacer
gattttttccttactcatgaccagctgtaa	Protospacer
******* *******.*******.* . .*

10. spacer 1.2|1574173|30|NZ_CP022383|CRISPRCasFinder matches to NZ_CP013139 (Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence) position: , mismatch: 8, identity: 0.733

tttataaagcagtacaaaccctttgcgctt	CRISPR spacer
gttataaaccagtacaaagcctttaatgta	Protospacer
 ******* ********* *****.   *

11. spacer 1.3|1574249|30|NZ_CP022383|CRISPRCasFinder,PILER-CR matches to NZ_CP039041 (Piscirickettsia salmonis strain Psal-072 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

ctatggaaaacacttacttttttaaagcca	CRISPR spacer
atcactaaaatgcttacttttttaaagcct	Protospacer
 *    ****..*****************

12. spacer 1.3|1574249|30|NZ_CP022383|CRISPRCasFinder,PILER-CR matches to NC_006128 (Borreliella bavariensis PBi plasmid cp26, complete sequence) position: , mismatch: 9, identity: 0.7

ctatggaaaacacttacttttttaaagcca	CRISPR spacer
taacagaaaacacttccttttttaaatttg	Protospacer
. *..********** ********** ...

13. spacer 1.7|1574553|31|NZ_CP022383|CRISPRCasFinder,PILER-CR matches to KF114880 (Leptospira phage LinZ_10, complete genome) position: , mismatch: 9, identity: 0.71

attgccttccaaggcgttcatactctatgag	CRISPR spacer
aaaaatttctaaggcgttcatactctctgga	Protospacer
*  . .***.**************** **..

14. spacer 1.7|1574553|31|NZ_CP022383|CRISPRCasFinder,PILER-CR matches to KF114879 (Leptospira phage LbrZ_5399, complete genome) position: , mismatch: 9, identity: 0.71

attgccttccaaggcgttcatactctatgag	CRISPR spacer
aaaaatttctaaggcgttcatactctctgga	Protospacer
*  . .***.**************** **..

15. spacer 1.7|1574553|31|NZ_CP022383|CRISPRCasFinder,PILER-CR matches to KX656785 (UNVERIFIED: Leptospira phage Lin_34, complete genome) position: , mismatch: 9, identity: 0.71

attgccttccaaggcgttcatactctatgag	CRISPR spacer
aaaaatttctaaggcgttcatactctctgga	Protospacer
*  . .***.**************** **..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1410304 : 1428953

Riemerella_phage(66.67%)

tail,capsid

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_095901238.1\|1410304_1411363_-	ImmA/IrrE family metallo-endopeptidase	A0A0U4JD08	Gordonia_phage	3.6e-22	35.8
WP_095902413.1\|1411432_1412071_-	hypothetical protein	NA	NA	NA	NA
WP_157909497.1\|1412327_1412822_+	hypothetical protein	NA	NA	NA	NA
WP_095901240.1\|1413131_1413494_+	hypothetical protein	NA	NA	NA	NA
WP_095901241.1\|1413497_1414226_+	hypothetical protein	F5A3A8	Riemerella_phage	8.3e-71	58.9
WP_095901242.1\|1414253_1418579_-\|tail	phage tail tape measure protein	F5A3A4	Riemerella_phage	1.4e-101	42.5
WP_157909498.1\|1418581_1418743_-	hypothetical protein	NA	NA	NA	NA
WP_095901243.1\|1418781_1419267_-	hypothetical protein	NA	NA	NA	NA
WP_095901244.1\|1419270_1419765_-	hypothetical protein	NA	NA	NA	NA
WP_095901245.1\|1419770_1420187_-	hypothetical protein	NA	NA	NA	NA
WP_095901246.1\|1420183_1420618_-	hypothetical protein	F5A3B3	Riemerella_phage	1.2e-29	50.0
WP_095901247.1\|1420614_1420941_-	hypothetical protein	NA	NA	NA	NA
WP_095901248.1\|1420955_1421282_-	hypothetical protein	F5A3B5	Riemerella_phage	1.7e-23	48.1
WP_095901249.1\|1421283_1422363_-\|capsid	major capsid protein E	F5A3B6	Riemerella_phage	1.3e-131	64.9
WP_095901250.1\|1422384_1422756_-	hypothetical protein	F5A3B7	Riemerella_phage	4.1e-42	69.1
WP_095901251.1\|1422762_1423431_-	spindle pole body component Spc42p	NA	NA	NA	NA
WP_095901252.1\|1423577_1424108_-	hypothetical protein	NA	NA	NA	NA
WP_095901253.1\|1424100_1424616_-	peptidoglycan hydrolase	S5M633	Brevibacillus_phage	8.6e-06	29.0
WP_095901254.1\|1424618_1425101_-	hypothetical protein	NA	NA	NA	NA
WP_095901255.1\|1425104_1425404_-	hypothetical protein	NA	NA	NA	NA
WP_095902414.1\|1425470_1428953_-	hypothetical protein	S5MB62	Bacillus_phage	2.7e-10	29.9

DBSCAN-SWA_2

2610996 : 2647150

unidentified_phage(25.0%)

transposase,holin,integrase,protease,tRNA,tail,terminase

attL 2639404:2639419|attR 2648877:2648892

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_095902081.1\|2610996_2612232_+\|integrase	site-specific integrase	H7BUI8	unidentified_phage	1.6e-21	30.4
WP_095902082.1\|2612576_2613404_+	DUF1837 domain-containing protein	NA	NA	NA	NA
WP_095902083.1\|2615570_2616368_-	DNA adenine methylase	A0A0K1LM14	Caulobacter_phage	1.4e-15	28.3
WP_095902084.1\|2616364_2617021_-\|tRNA	methionyl-tRNA formyltransferase	A4JWM2	Burkholderia_virus	1.0e-35	37.7
WP_095902085.1\|2618518_2619049_-	hypothetical protein	NA	NA	NA	NA
WP_095902086.1\|2619045_2619480_-	lysozyme	A0A1B1INV7	uncultured_Mediterranean_phage	1.8e-36	51.4
WP_095902452.1\|2619487_2619874_-	hypothetical protein	NA	NA	NA	NA
WP_095902087.1\|2621054_2621915_-	hypothetical protein	A0A221J6G5	Arthrobacter_phage	4.1e-08	33.3
WP_095902088.1\|2621973_2622432_-	hypothetical protein	NA	NA	NA	NA
WP_095902089.1\|2622424_2623267_-	nucleotidyltransferase	NA	NA	NA	NA
WP_095902090.1\|2623269_2623575_-	hypothetical protein	NA	NA	NA	NA
WP_095902091.1\|2623552_2624092_-\|holin	holin	NA	NA	NA	NA
WP_095902092.1\|2624107_2624341_-	hypothetical protein	NA	NA	NA	NA
WP_095902093.1\|2624348_2624639_-	oxidase	NA	NA	NA	NA
WP_095902094.1\|2624640_2625129_-	hypothetical protein	NA	NA	NA	NA
WP_095902095.1\|2625092_2626157_-	hypothetical protein	NA	NA	NA	NA
WP_095902096.1\|2626146_2626743_-	hypothetical protein	NA	NA	NA	NA
WP_157909520.1\|2626746_2626896_-	hypothetical protein	NA	NA	NA	NA
WP_095902097.1\|2626934_2627255_-	hypothetical protein	NA	NA	NA	NA
WP_095902098.1\|2627276_2627687_-	hypothetical protein	NA	NA	NA	NA
WP_095902099.1\|2627686_2628916_-	hypothetical protein	NA	NA	NA	NA
WP_095902100.1\|2628908_2629133_-	hypothetical protein	NA	NA	NA	NA
WP_095902101.1\|2629153_2630074_-	hypothetical protein	NA	NA	NA	NA
WP_095902102.1\|2630073_2631183_-\|protease	Clp protease ClpP	A0A1W6JT88	Pseudomonas_phage	5.4e-21	36.6
WP_095902103.1\|2631330_2631777_+	hypothetical protein	NA	NA	NA	NA
WP_095902453.1\|2631807_2633370_+\|terminase	phage terminase large subunit	H7BVH1	unidentified_phage	6.4e-36	27.0
WP_095902104.1\|2633371_2633794_+	DUF1320 family protein	NA	NA	NA	NA
WP_095902105.1\|2633885_2636408_+	DUF935 family protein	NA	NA	NA	NA
WP_095902106.1\|2636552_2638499_+\|tail	phage tail tape measure protein	A0A0A0YSZ0	Flavobacterium_phage	6.8e-35	28.4
WP_095902107.1\|2638500_2639049_+	hypothetical protein	NA	NA	NA	NA
WP_095902108.1\|2639045_2639564_+	hypothetical protein	NA	NA	NA	NA
2639404:2639419	attL	NA	NA	NA	NA
WP_095902109.1\|2639564_2639933_-	hypothetical protein	NA	NA	NA	NA
WP_095902110.1\|2639929_2640301_-	hypothetical protein	NA	NA	NA	NA
WP_095902111.1\|2640345_2640807_-	hypothetical protein	NA	NA	NA	NA
WP_095902112.1\|2640811_2641372_-	hypothetical protein	NA	NA	NA	NA
WP_157909521.1\|2641377_2641677_-	hypothetical protein	NA	NA	NA	NA
WP_095902114.1\|2641697_2642294_-	hypothetical protein	NA	NA	NA	NA
WP_157909522.1\|2642326_2642494_-	hypothetical protein	NA	NA	NA	NA
WP_095902115.1\|2642480_2642693_-	hypothetical protein	NA	NA	NA	NA
WP_095902116.1\|2642768_2643227_-	hypothetical protein	NA	NA	NA	NA
WP_095902117.1\|2643347_2643977_-	DUF3164 family protein	NA	NA	NA	NA
WP_095902118.1\|2644014_2644950_-	ATP-binding protein	NA	NA	NA	NA
WP_157909523.1\|2645017_2647150_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
2648877:2648892	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP022383

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection