CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP017473	Enterobacter cloacae strain M12X01451 plasmid pM12X01451, complete sequence	0 crisprs	NA	0	0	2	0
NZ_CP017475	Enterobacter cloacae strain M12X01451 chromosome complete genome	1 crisprs	csa3,WYL,DEDDh,DinG,cas3	0	2	9	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

4926 : 87107

Shigella_phage(29.41%)

transposase,lysis,coat,integrase

attL 4909:4949|attR 18637:18677

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4909:4949	attL	NA	NA	NA	NA
WP_085949497.1\|4926_6074_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	2.3e-147	92.6
WP_095907054.1\|6775_7726_-	YadA-like family protein	A0A2L1IV32	Escherichia_phage	1.4e-22	68.8
WP_095907055.1\|9438_10065_+	ParB-like nuclease domain-containing protein	A0A0F7L444	uncultured_marine_virus	1.6e-54	52.8
WP_095907056.1\|10232_10970_-	YadA-like family protein	A0A1V0DXR3	Yersinia_phage	7.2e-06	36.0
WP_095907058.1\|11755_12745_+\|integrase	tyrosine-type recombinase/integrase	A0A1P8DJ76	Virus_Rctr85	1.3e-47	39.2
WP_095907059.1\|13017_13593_+	recombinase family protein	A0JC18	Ralstonia_phage	1.2e-45	55.1
WP_095907060.1\|17442_18297_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.0e-80	55.8
WP_095907061.1\|18293_18578_-\|transposase	transposase	U5P4I9	Shigella_phage	7.6e-12	43.7
WP_095907163.1\|18636_19236_+	ParA family plasmid-partitioning AAA ATPase	NA	NA	NA	NA
18637:18677	attR	NA	NA	NA	NA
WP_079815492.1\|19348_19528_+	Par-like protein	NA	NA	NA	NA
WP_095907062.1\|19563_19767_+	hypothetical protein	NA	NA	NA	NA
WP_095907063.1\|19929_24702_-	AIDA repeat-containing protein	NA	NA	NA	NA
WP_095907064.1\|24685_25915_-	autotransporter strand-loop-strand O-heptosyltransferase	NA	NA	NA	NA
WP_095907065.1\|27349_27655_-	type II toxin-antitoxin system toxin CcdB	NA	NA	NA	NA
WP_095907066.1\|27656_27875_-	type II toxin-antitoxin system antitoxin CcdA	NA	NA	NA	NA
WP_095907164.1\|30136_31066_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	3.9e-73	53.4
WP_095907069.1\|31147_31729_-	DUF2913 family protein	NA	NA	NA	NA
WP_095907165.1\|32084_32279_-	DUF2767 family protein	I6R0R9	Salmonella_phage	3.2e-06	42.9
WP_095907070.1\|33621_33801_-	hypothetical protein	A0A2L1IVB6	Escherichia_phage	3.0e-06	86.7
WP_095907071.1\|34134_34248_-\|lysis	colicin release lysis protein	NA	NA	NA	NA
WP_157735640.1\|34328_34637_+	colicin immunity protein Cui	NA	NA	NA	NA
WP_157735641.1\|34662_34860_+	colicin immunity protein Cui	NA	NA	NA	NA
WP_095907074.1\|35651_36080_+	Exc2 family lipoprotein	NA	NA	NA	NA
WP_095907075.1\|36648_37692_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_147720008.1\|38094_38340_-	hypothetical protein	NA	NA	NA	NA
WP_095907076.1\|39307_41674_-	TonB-dependent receptor	NA	NA	NA	NA
WP_095907077.1\|41692_43735_-	TonB-dependent receptor	NA	NA	NA	NA
WP_095907061.1\|44267_44552_+\|transposase	transposase	U5P4I9	Shigella_phage	7.6e-12	43.7
WP_095907060.1\|44548_45403_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.0e-80	55.8
WP_095907078.1\|45920_46898_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_095907079.1\|47098_47740_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_095907080.1\|47815_48538_+	molecular chaperone	NA	NA	NA	NA
WP_095907081.1\|48553_51049_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_095907082.1\|51045_51981_+	fimbrial protein	NA	NA	NA	NA
WP_095907083.1\|52343_52661_-	hypothetical protein	NA	NA	NA	NA
WP_095907084.1\|54253_55762_+	EAL domain-containing protein	NA	NA	NA	NA
WP_147720010.1\|58023_58218_-	hypothetical protein	NA	NA	NA	NA
WP_095907085.1\|58346_58985_-	hypothetical protein	NA	NA	NA	NA
WP_095907086.1\|58972_59308_-	hypothetical protein	NA	NA	NA	NA
WP_157735642.1\|59610_59778_-	hypothetical protein	NA	NA	NA	NA
WP_095907087.1\|61135_61390_+	hypothetical protein	NA	NA	NA	NA
WP_095907088.1\|61525_61870_+	hypothetical protein	NA	NA	NA	NA
WP_095907089.1\|62514_63522_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_095907090.1\|63533_64208_+	NAD(P)H-binding protein	NA	NA	NA	NA
WP_095907091.1\|67011_68034_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	3.7e-186	91.8
WP_095907092.1\|68810_69575_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_095907093.1\|69772_71041_-	MFS transporter	NA	NA	NA	NA
WP_095907094.1\|72215_73706_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_095907095.1\|74388_79764_-	AIDA repeat-containing protein	NA	NA	NA	NA
WP_095907064.1\|79747_80977_-	autotransporter strand-loop-strand O-heptosyltransferase	NA	NA	NA	NA
WP_095907096.1\|81732_82365_+	recombinase family protein	A0A1V0E035	Clostridioides_phage	5.6e-07	31.2
WP_000840805.1\|82418_82619_+	hypothetical protein	NA	NA	NA	NA
WP_095907166.1\|82764_83718_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	8.0e-74	56.8
WP_157735643.1\|85794_85932_+	hypothetical protein	NA	NA	NA	NA
WP_157735645.1\|86009_86180_+	colicin immunity protein Cui	NA	NA	NA	NA
WP_095907098.1\|86231_87107_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	4.1e-72	55.7

DBSCAN-SWA_2

123516 : 153749

Shigella_phage(33.33%)

transposase,integrase

attL 121044:121064|attR 143711:143731

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
121044:121064	attL	NA	NA	NA	NA
WP_095907172.1\|123516_124494_+\|transposase	IS110 family transposase	Q75QL1	Wolbachia_phage	3.5e-24	32.3
WP_095907129.1\|124590_124842_+	YoeB-YefM toxin-antitoxin system antitoxin YefM	NA	NA	NA	NA
WP_095907130.1\|124838_125093_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA
WP_095907131.1\|126016_126517_-	antirestriction protein ArdA	G9FHQ1	Rhodococcus_virus	1.3e-06	28.6
WP_095907132.1\|126559_126985_-	antirestriction protein	A9J566	Pseudomonas_phage	3.9e-12	32.2
WP_095907133.1\|127246_127552_+	chorismate mutase	NA	NA	NA	NA
WP_095907134.1\|128015_128246_-	hypothetical protein	NA	NA	NA	NA
WP_095907135.1\|130225_131203_-	ParB/RepB/Spo0J family partition protein	A0A1B0V750	Salmonella_phage	3.0e-84	53.8
WP_095907136.1\|131199_132405_-	AAA family ATPase	A0A077SL49	Escherichia_phage	1.1e-163	69.8
WP_147720012.1\|134526_135516_+	RepB family plasmid replication initiator protein	J9Q7H0	Salmonella_phage	1.6e-101	59.3
WP_095907138.1\|135813_136209_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_095907139.1\|137043_137550_-	hypothetical protein	NA	NA	NA	NA
WP_095907061.1\|137609_137894_+\|transposase	transposase	U5P4I9	Shigella_phage	7.6e-12	43.7
WP_095907060.1\|137890_138745_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.0e-80	55.8
WP_095907140.1\|138758_139274_-\|transposase	transposase	NA	NA	NA	NA
WP_095907141.1\|139631_139940_+	hypothetical protein	NA	NA	NA	NA
WP_017694173.1\|139974_140205_-	partitioning protein	NA	NA	NA	NA
WP_095907142.1\|140257_140878_-	ParA family protein	A2I303	Vibrio_virus	2.0e-17	33.3
WP_095907143.1\|142879_143383_-	DUF2913 family protein	NA	NA	NA	NA
WP_147720014.1\|144196_145372_-	enterotoxin production-related protein TieB	NA	NA	NA	NA
143711:143731	attR	NA	NA	NA	NA
WP_095907145.1\|145440_147702_-	TonB-dependent receptor	NA	NA	NA	NA
WP_095907146.1\|147818_148619_-	energy transducer TonB	NA	NA	NA	NA
WP_095907147.1\|148626_149505_-	ChaN family lipoprotein	NA	NA	NA	NA
WP_095907148.1\|150021_150492_-	hypothetical protein	NA	NA	NA	NA
WP_095907149.1\|150575_151148_-	FAD-dependent oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	8.1e-29	38.3
WP_095907150.1\|151308_152163_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_095907060.1\|152613_153468_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.0e-80	55.8
WP_095907061.1\|153464_153749_-\|transposase	transposase	U5P4I9	Shigella_phage	7.6e-12	43.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP017475

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP017475_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017475_1

692225-692356

Orphan

Consensus_repeat	Method
TGTTGCCGCCATCGTCGGTATTGC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP017475_1

>merge|NZ_CP017475|1|692225-692356|CRISPRCasFinder
TGCCGCCGCCGTTATCGGTATTATCACCACCGTCGCCGTTATCATTGCCGCCGCTGTTGCCGCCATCGTCGGTATTGCTGCCATTGTCACTGTTACCGCCATTATCAGTGTTACCGCCATCGTCGGTATTGC

>NZ_CP017475|1|1|692225-692356|CRISPRCasFinder
TGCCGCCGCCGTTATCGGTATTAT	CACCACCGTCGCCGTTATCATTGCCGCCGC
TGTTGCCGCCATCGTCGGTATTGC	TGCCATTGTCACTGTTACCGCCATTATCAG
TGTTACCGCCATCGTCGGTATTGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017475.1\|WP_013095528.1\|683582_684032_+\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|237908
NZ_CP017475.1\|WP_013095530.1\|685189_686011_+\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|223366
NZ_CP017475.1\|WP_013095540.1\|698812_699634_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP017475.1\|WP_003856458.1\|678585_678849_-\|30S-ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|178943
NZ_CP017475.1\|WP_095907327.1\|704547_705366_+\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP017475.1\|WP_095907324.1\|679176_680103_+\|bifunctional-riboflavin-kinase/FAD-synthetase	unknown	unknown	gnl\|CDD\|235536
NZ_CP017475.1\|WP_013095527.1\|682964_683465_+\|signal-peptidase-II	unknown	unknown	gnl\|CDD\|234739
NZ_CP017475.1\|WP_013095539.1\|698431_698809_-\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP017475.1\|WP_008502023.1\|697059_697539_+\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NZ_CP017475.1\|WP_048972731.1\|694556_695087_+\|glutathione-regulated-potassium-efflux-system-oxidoreductase-KefF	unknown	unknown	gnl\|CDD\|234852
NZ_CP017475.1\|WP_020688477.1\|697578_698427_-\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)-ApaH	unknown	unknown	gnl\|CDD\|273208
NZ_CP017475.1\|WP_013095533.1\|690996_691230_+\|YgdI/YgdR-family-lipoprotein	unknown	unknown	gnl\|CDD\|380215
NZ_CP017475.1\|WP_095907325.1\|680148_682965_+\|isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235588
NZ_CP017475.1\|WP_028015471.1\|684033_684984_+\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	unknown	unknown	gnl\|CDD\|234893
NZ_CP017475.1\|WP_013095542.1\|700616_701903_-\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP017475.1\|WP_013095532.1\|687632_690857_+\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
NZ_CP017475.1\|WP_013095541.1\|699630_700617_-\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP017475.1\|WP_023620045.1\|686465_687614_+\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|237139
NZ_CP017475.1\|WP_095907326.1\|695079_696945_+\|glutathione-regulated-potassium-efflux-system-protein-KefC	unknown	unknown	gnl\|CDD\|235131
NZ_CP017475.1\|WP_045902536.1\|701956_704308_-\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158

Protein	Function_ID	Function_description	E-value
NZ_CP017475.1\|WP_013095528.1\|683582_684032_+\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|237908	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional.	1.82359e-107
NZ_CP017475.1\|WP_013095530.1\|685189_686011_+\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|223366	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism].	1.01161e-140
NZ_CP017475.1\|WP_013095540.1\|698812_699634_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	1.09184e-146
NZ_CP017475.1\|WP_003856458.1\|678585_678849_-\|30S-ribosomal-protein-S20	gnl\|CDD\|178943	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed.	1.02681e-26
NZ_CP017475.1\|WP_095907327.1\|704547_705366_+\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.47092e-172
NZ_CP017475.1\|WP_095907324.1\|679176_680103_+\|bifunctional-riboflavin-kinase/FAD-synthetase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	2.24747e-170
NZ_CP017475.1\|WP_013095527.1\|682964_683465_+\|signal-peptidase-II	gnl\|CDD\|234739	PRK00376, lspA, lipoprotein signal peptidase.	3.46545e-76
NZ_CP017475.1\|WP_013095539.1\|698431_698809_-\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	9.40134e-77
NZ_CP017475.1\|WP_008502023.1\|697059_697539_+\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.13223e-126
NZ_CP017475.1\|WP_048972731.1\|694556_695087_+\|glutathione-regulated-potassium-efflux-system-oxidoreductase-KefF	gnl\|CDD\|234852	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF.	1.55017e-134
NZ_CP017475.1\|WP_020688477.1\|697578_698427_-\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)-ApaH	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
NZ_CP017475.1\|WP_013095533.1\|690996_691230_+\|YgdI/YgdR-family-lipoprotein	gnl\|CDD\|380215	NF033216, lipo_YgdI_YgdR, YgdI/YgdR family lipoprotein. Members of this family are exclusively lipoproteins of small size, including YgdI and YgdR from E. coli K-12.	6.95711e-30
NZ_CP017475.1\|WP_095907325.1\|680148_682965_+\|isoleucine--tRNA-ligase	gnl\|CDD\|235588	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.	0
NZ_CP017475.1\|WP_028015471.1\|684033_684984_+\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	gnl\|CDD\|234893	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed.	0
NZ_CP017475.1\|WP_013095542.1\|700616_701903_-\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NZ_CP017475.1\|WP_013095532.1\|687632_690857_+\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NZ_CP017475.1\|WP_013095541.1\|699630_700617_-\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP017475.1\|WP_023620045.1\|686465_687614_+\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0
NZ_CP017475.1\|WP_095907326.1\|695079_696945_+\|glutathione-regulated-potassium-efflux-system-protein-KefC	gnl\|CDD\|235131	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional.	0
NZ_CP017475.1\|WP_045902536.1\|701956_704308_-\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0

>NZ_CP017475.1|WP_013095533.1|690996_691230_+|YgdI/YgdR-family-lipoprotein
MQNKLLIASVLAATAMFTVAGCSSNQAVKTTDGRTIITDGKPQVDDDTGLVSYKNAETGQTEQINRDQVKSMGELDN
>NZ_CP017475.1|WP_013095532.1|687632_690857_+|carbamoyl-phosphate-synthase-large-subunit
MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLDTARSGIAHNMEEALAVAAEVGYPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFSVNPKTGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEALTKIRRELKDAGAERIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAELGINGLDADFLRMLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEDECEANPSVDRDKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVDRLKLKQPANATVTAIEQAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKDNEVYLIEVNPRAARTVPFVSKATGIPLAKVAARVMAGQTLAQQGVTKEIIPPYYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKSGRALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTAGRQAIEDSKLIRRSALQYKVHYDTTLNGGFATAMALNADATEKVISVQEMHAQINK
>NZ_CP017475.1|WP_023620045.1|686465_687614_+|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit
MIKSALLVLEDGTQFIGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVGTNAADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNLDAALALEKAKAFPGLNGMDLAKEVTTTEAYSWTQGSWTLSDDLPEAKKESELPFHVVAYDFGAKRNILRMLVDRGCRLTVVPAKTSAEDVLKMNPDGIFLSNGPGDPAPCDYAIDAIKSFLETDIPVFGICLGHQLLALASGANTIKMKFGHHGGNHPVKDIDNNTVMITAQNHGFAVDEASMPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEASPGPHDAAPLFDHFIELIEQYRKTAK
>NZ_CP017475.1|WP_013095530.1|685189_686011_+|4-hydroxy-tetrahydrodipicolinate-reductase
MHDAQIRVAIAGAGGRMGRQLIQAALQMDGVALGAALEREGSSLLGADAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTRPEGTLTHLAFCRQHGKGMVIGTTGFDEAGKQAIQDASHEIAIVFAANFSVGVNVMLKLLEKAAKVMGDYTDIEIVEAHHRYKVDAPSGTALAMGEAIAHALDKDLKDCAVYTREGHTGERVPGTIGFATVRAGDIVGEHTAMFADIGERVEITHKASSRMTFANGAVRSALWLKGKENGLFDMRDVLDLNNL
>NZ_CP017475.1|WP_028015471.1|684033_684984_+|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase
MQILLANPRGFCAGVDRAISIVENALEIYGAPIYVRHEVVHNRYVVDSLRERGAIFIEQISEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDATCPLVTKVHMEVARASRRGEESILIGHAGHPEVEGTMGQYSNPEGGMYLVESPEDVLTLNVKNEARLSFMTQTTLSVDDTSDVIDALRQRFPKIVGPRKDDICYATTNRQEAVRALAEQADVVLVVGSKNSSNSNRLAELAQRMGKAAFLIDDATDIQEAWVKNAACVGVTAGASAPDILVQNVIARLQELGGGEAVPLEGREENIVFEVPKELRIDAREVE
>NZ_CP017475.1|WP_013095528.1|683582_684032_+|FKBP-type-peptidyl-prolyl-cis-trans-isomerase
MSKSVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDTSLSEGLEQQLLGLKEGEKKAFSLEPDAAFGVPSPDLIQYFSRREFMDAGEPEIGAIMLFTAMDGSEMPGVIREINGDSITVDFNHPLAGRTVHFDIEVLEIDPVLEA
>NZ_CP017475.1|WP_013095527.1|682964_683465_+|signal-peptidase-II
MSKTLCSTGLRWLWLVVVVLIIDLGSKFLILQNFALGDTVPLFPSLNLHYARNYGAAFSFLADSGGWQRWFFAGIAIGICVVLAVLMYRSKATQKLNNIAYALIIGGALGNLFDRLWHGFVVDMIDFYVGDWHFATFNLADSAICIGAALIVLEGFLPKPAAKEQA
>NZ_CP017475.1|WP_095907325.1|680148_682965_+|isoleucine--tRNA-ligase
MSDYKSTLNLPETGFPMRGDLAKREPGMLARWTDDDLYGIIRAAKKGKKTFILHDGPPYANGSIHIGHSVNKILKDIIVKSKGLAGYDSPYVPGWDCHGLPIELKVEQEFGKPGEKFTAAEFRAKCREYAATQVDGQRADFIRLGVLGDWSHPYLTMDFKTEANIIRALGKIIGNGHLHKGAKPVHWCVDCRSALAEAEVEYYDKTSPSIDVAFEAVDQDAIKGKFGLPGVSGPISLVIWTTTPWTLPANRAISLSGEFEYALVQIDGQALILAKDLVESVLKRANITDYTVLGTVKGDALELMRFKHPFLDFDVPAILGDHVTLEAGTGAVHTAGGHGPDDYNISLKYGLEIANPVGPDGSYLPGTYPSLDGINVFKANDIIVEMLRERGALLHVEKMQHSYPCCWRHKTPIIFRATPQWFVSMDQKGLREQSLKEIKGVQWIPDWGQARIESMVANRPDWCISRQRTWGVPMSLFVHKETHELHPNTLELMEEVAKRVEVDGIQAWWDLDARDILGADADNYEKVPDTLDVWFDSGSTHASVVDVRPEFAGHAADMYLEGSDQHRGWFMSSLMISTAMKGKAPYRQVLTHGFTVDGQGRKMSKSIGNTVSPQDVMNKLGADILRLWVASTDYTGEMAVSDEILKRAADSYRRIRNTARFLLANLNGFDPAKDMVKPEEMVVLDRWAVGCAKAAQEDIVKAYESYDFHEVVQRLMRFCSIEMGSFYLDIIKDRQYTAKADSVARRSCQTALYHIAEALVRWMAPIMSFTADEIWGYLPGEREKYVFTGEWYEGLFDLSSTEAMNDAFWDELLKVRGEVNKVIEQARADKKVGGSLEAAVTLYAEPELAAKLMALGDELRFVLLTSGAKVADYADASADAQQSELLKGLKVALSKAEGEKCPRCWHYTTDVGQVAEHADICGRCVSNVAGDGEKRKFA
>NZ_CP017475.1|WP_095907324.1|679176_680103_+|bifunctional-riboflavin-kinase/FAD-synthetase
MKLIRGIHNLSKAPHGCVLTIGNFDGVHRGHQALLQGLHKEGEARGLPVVVMIFEPQPLELFAGDKSPARLTRLREKLRYLAQSGVDYVLCVRFDRRFAALTAQNFVSDLLVKRLGVQFLAVGDDFRFGAGRQGDFLLLQKAGLEYGFDVTSAMTFCEGGVRVSSTAVRQALANDELETAENLLGHPFTISGRVVHGDALGRTIGFPTANIPLRRQVSPVKGVYAVEVAGLGEKPFYGVANIGTRPTVAGVRQQLEVHLLDVVMDLYGRHIDVILRKKIRNEQRFASLDELKAQIARDELTAREFFGL
>NZ_CP017475.1|WP_003856458.1|678585_678849_-|30S-ribosomal-protein-S20
MANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAAQNAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA
>NZ_CP017475.1|WP_048972731.1|694556_695087_+|glutathione-regulated-potassium-efflux-system-oxidoreductase-KefF
MILIIYAHPYPHHSHANKRMLEQVRTLDNVEIRSLYQLYPDFNIDIAAEQEALTRADLIIWQHPMQWYSIPPLLKLWIDKVFSHGWAYGHNGHALKGKSLMWAVTTGGGESHFDIGSFPGFEVLAQPLQATALYCGLTWLPPFAMHCTFVCDDETLQAQARHYKQRLLEWQETHNG
>NZ_CP017475.1|WP_095907326.1|695079_696945_+|glutathione-regulated-potassium-efflux-system-protein-KefC
MDSHTLIQALIYLGAAALIVPVAVRLGLGSVLGYLIAGCVIGPWGFRLVTDAEAILHFAEIGVVLMLFVIGLELDPQRLWKLRASVFGGGALQMAACGLLLGGFCILLGMDWKVAELIGMTLALSSTAIAMQAMNERNLTVSQMGRSAFSVLLFQDIAAIPLVAMIPLLAASGASTTLGAFALSALKVVGALALVVLLGRYVTRPLLRFVARSGLREVFSAVALFLVFGFGLLLEEAGLSMAMGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIGVGMSIDFGTLVTHPLRILILLVGFLVIKMVMLWLIARPLNVPGRQRLWFAVLLGQGSEFAFVVFGAAQMANVLDPEWAKALTLAVALSMAATPILLVLLTRLEKTGSEQEREADEIDEEQPRVIIAGFGRFGQITGRLLLSSGVKMVILDHDPDHVDTLRKFDMKVFYGDATRVDLLESAGAAKAEVLINAIDDPQTSMQLVELVKEHFPNLTIISRARDVDHYIQLRQAGVDAPERETFEGALKSGRMALESLGLGAYEARERADLFRRFNTDMVEEMVAMAGSTASERAAVFKRTSAMLTEIINEDRNHLSLVQRHGWQGTEEGKHTGDPADEPKSKPSA
>NZ_CP017475.1|WP_008502023.1|697059_697539_+|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRTTLNKPVVMGRLTWESIGRPLPGRKNIVISSQPGTDDRVEWVKSVDEAIAACGNAEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR
>NZ_CP017475.1|WP_020688477.1|697578_698427_-|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)-ApaH
MSTYLIGDVHGCYDELIALLKQVDFTPGRDILWLTGDLVARGPGSLEVLRFVKSLGDSVRMVLGNHDLHLLAVFAGISRNKPKDRLTPLLEAPDADELINWLRRQPLLQIDEEKKLVMAHAGITPQWDLETAKTCARDVEAVLASDSYPFFLDAMYGDMPNHWSEDLSGLARLRFITNAFTRMRFCFPNGQLDMYSKETPESAPAPLKPWFAIPGPVTSEYSVVFGHWAALEGKGTPDGIYGLDTGCCWGGDLTCLRWEDKTYFVQPSNRQLDLGEGEAVAS
>NZ_CP017475.1|WP_013095539.1|698431_698809_-|Co2+/Mg2+-efflux-protein-ApaG
MIDSPRVCVQVQSVYVESQSSPDEERFVFAYTVTIRNLGRMPVQLLGRYWLITNGNGREIEVQGEGVVGEQPHIAPGEEYQYTSGAVIETPLGTMQGHYEMVDVDGNVFRVAIPVFRLAVTTLIH
>NZ_CP017475.1|WP_013095540.1|698812_699634_-|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MTNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDELTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELSEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYFCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHKTMPYPVKDLRVLSRITTEAFNQRRKTIRNSLGNLFTVDVLAELGIDPAMRAENISVEQYCKLANYISENAPPKES
>NZ_CP017475.1|WP_013095541.1|699630_700617_-|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MKQHRVVITPGEPAGIGPDLVVQLAQRSWPVELVVCADATLLQDRASLLGLPLTLIPYVEGQQPAPQQAGTLTLLPVPLRTPVIPGQLSTENGHYVVETLARACDGCIKGEFAALITGPVHKGVINEAGIPFTGHTEFFEERSHSPKVVMMLATEAMRVALVTTHLPIKAIPDAITPELLREIIGILHHDLQTKFGIKQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLNEMRAKGMNLSGPLPADTLFQPKYLDNADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALDLAGQGKADVGSFITALNLAIKMIVNTQ
>NZ_CP017475.1|WP_013095542.1|700616_701903_-|peptidylprolyl-isomerase-SurA
MKNWKTLLLGVAMVANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMKSVKLNSGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKITDEQLDQAIANIAKQNNMTLDQMRSRLAYDGISYSTYRNQIRKEMLISEVRNNEVRRRVTILPQEVDALAKQVGNQNDASTELNLSHILIPLPENPTSDQAAEAESQARAIVEQARNGSDFGKLAITYSADQQALKGGQMGWGRIQELPSIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQNISVTEVHARHILLKPSPIMTDDQARAKLQQIAADIKSGKTSFANAAKEFSQDPGSANQGGDLGWAAADIYDPAFRDALMKLNKGQMSAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLFNRKFSEEAATWMQEQRASAYVKVLSN
>NZ_CP017475.1|WP_045902536.1|701956_704308_-|LPS-assembly-protein-LptD
MKKRIPTLLATMIGTALYSQQGLAADLASQCMLGVPSYNRPLVSGDTNSLPVTITADSSKGTYPDNATFTGSVDINQGNSRLQADEVQLHQKQPEGAAEPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWEGDYQMVGRQGRGKADLMKQRGENRYTILENGSFTSCLPGSNTWSVVGSEVIHDREEQVAEIWNARFKLGPVPVFYSPYLQLPVGDKRRSGFLIPNAKYSTSNYFEFYLPYYWNIAPNMDATITPHYIHKRGNVMWENEFRYLTQAGTGLMELDYLPSDKVFQDEHPTEGDKHRWMYYWRHAGVMDQVWRFNVDYTKVSDPYYFNDFDSKYGSSTDGYATQKFSVGYAIQNFNATVSTKQFQVFDSQTRSTYGAEPQLDVNWYQNDVGPFDTRVYAQAVHFVNTNSDMPEATRVHLEPTINLPLSNNWSSLNTEAKLMATHYQQKNVDWYNNRYGTDLDESVNRVLPQFKMDGKLIFERDMGLLADGYTQTLEPRMQYLYVPYRDQSKIQNYDSAFLQSDYSGLFRDRTYGGLDRIASANQLTTGVTTRVYDESAVERFNVSVGQIYYFTESRTGDDNINWEKDNKTGSLVWAGDTYWRMTDRWGLRGGLQYDTRLDNIATSSAAVEYRRDEDRMVQLTYRYASPEYIQATLPNYATSEQYKDGISQVGGAASWPIADRWSIVGAYYFDTNANKPADQMVGLQYNSCCYALRVGYERKLNGWDTQNNQSKYDNVIGFNVELRGLSSNYGLGTQQMLRSNILPYRSSL
>NZ_CP017475.1|WP_095907327.1|704547_705366_+|co-chaperone-DjlA
MQYWGKIIGVAFAIIMGAGFWGILLGLIIGHMFDKARSRKMAWFANQRERQSLFFSTTFEVMGHLTKSKGRVTEADIQIASVFMDRMNLHGESRVAAQNAFRIGKSDNYPLREKMRQFRSICFGRFDLIRMFLEIQIQAAFADGSLHPNERDVLYVIAEELGISRMQFDQFLRMMQGGAHFGGGYQQHQSSGGGWQQAQRGPTLEDACNVLGVKPSDDATTIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAYELIKEQKNFK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP017475_1	1.1\|692249\|30\|NZ_CP017475\|CRISPRCasFinder	692249-692278	30	NZ_CP013600	Rhizobium sp. N741 plasmid pRspN741e, complete sequence	737346-737375	6	0.8
NZ_CP017475_1	1.1\|692249\|30\|NZ_CP017475\|CRISPRCasFinder	692249-692278	30	NZ_CP013504	Rhizobium esperanzae strain N561 plasmid pRspN561d, complete sequence	737376-737405	6	0.8
NZ_CP017475_1	1.1\|692249\|30\|NZ_CP017475\|CRISPRCasFinder	692249-692278	30	NZ_CP013510	Rhizobium sp. N1341 plasmid pRspN1341e, complete sequence	735787-735816	6	0.8
NZ_CP017475_1	1.1\|692249\|30\|NZ_CP017475\|CRISPRCasFinder	692249-692278	30	NZ_CP013521	Rhizobium sp. N113 plasmid pRspN113d, complete sequence	740034-740063	6	0.8
NZ_CP017475_1	1.1\|692249\|30\|NZ_CP017475\|CRISPRCasFinder	692249-692278	30	NZ_CP013494	Rhizobium sp. N6212 plasmid pRspN6212d, complete sequence	726935-726964	6	0.8
NZ_CP017475_1	1.1\|692249\|30\|NZ_CP017475\|CRISPRCasFinder	692249-692278	30	NZ_CP013594	Rhizobium sp. N871 plasmid pRspN871d, complete sequence	737376-737405	6	0.8
NZ_CP017475_1	1.1\|692249\|30\|NZ_CP017475\|CRISPRCasFinder	692249-692278	30	NZ_CP032695	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence	1386373-1386402	7	0.767
NZ_CP017475_1	1.2\|692303\|30\|NZ_CP017475\|CRISPRCasFinder	692303-692332	30	CP052797	Salmonella enterica subsp. enterica serovar Infantis strain CVM N18S2039 plasmid pN18S2039, complete sequence	63456-63485	7	0.767
NZ_CP017475_1	1.2\|692303\|30\|NZ_CP017475\|CRISPRCasFinder	692303-692332	30	CP052804	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S973 plasmid pN17S0973, complete sequence	12622-12651	7	0.767
NZ_CP017475_1	1.2\|692303\|30\|NZ_CP017475\|CRISPRCasFinder	692303-692332	30	CP038508	Salmonella enterica subsp. enterica serovar Infantis strain FARPER-219 plasmid p-F219, complete sequence	129996-130025	7	0.767
NZ_CP017475_1	1.2\|692303\|30\|NZ_CP017475\|CRISPRCasFinder	692303-692332	30	CP052788	Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0611 plasmid pN19S0611, complete sequence	221022-221051	7	0.767
NZ_CP017475_1	1.2\|692303\|30\|NZ_CP017475\|CRISPRCasFinder	692303-692332	30	CP052786	Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0641 plasmid pN19S0641, complete sequence	232950-232979	7	0.767
NZ_CP017475_1	1.2\|692303\|30\|NZ_CP017475\|CRISPRCasFinder	692303-692332	30	CP052838	Salmonella enterica subsp. enterica serovar Infantis strain CVM N16S097 plasmid pN16S097, complete sequence	231525-231554	7	0.767
NZ_CP017475_1	1.2\|692303\|30\|NZ_CP017475\|CRISPRCasFinder	692303-692332	30	NZ_CP028316	Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CFSAN067217 plasmid pSC-31-2, complete sequence	128630-128659	7	0.767
NZ_CP017475_1	1.2\|692303\|30\|NZ_CP017475\|CRISPRCasFinder	692303-692332	30	CP051676	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1234 plasmid pN16S1234, complete sequence	101317-101346	7	0.767
NZ_CP017475_1	1.2\|692303\|30\|NZ_CP017475\|CRISPRCasFinder	692303-692332	30	NZ_CP022063	Salmonella enterica strain FDAARGOS_312 plasmid unnamed3, complete sequence	84260-84289	7	0.767
NZ_CP017475_1	1.2\|692303\|30\|NZ_CP017475\|CRISPRCasFinder	692303-692332	30	CP052781	Salmonella enterica strain CVM N19S0949 plasmid pN19S0949, complete sequence	187128-187157	7	0.767
NZ_CP017475_1	1.2\|692303\|30\|NZ_CP017475\|CRISPRCasFinder	692303-692332	30	CP052834	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S041 plasmid pN17S0041, complete sequence	24105-24134	7	0.767
NZ_CP017475_1	1.2\|692303\|30\|NZ_CP017475\|CRISPRCasFinder	692303-692332	30	CP052793	Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0388 plasmid pN19S0388, complete sequence	43406-43435	7	0.767
NZ_CP017475_1	1.2\|692303\|30\|NZ_CP017475\|CRISPRCasFinder	692303-692332	30	CP052832	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1040 plasmid pN17S1040, complete sequence	178361-178390	7	0.767
NZ_CP017475_1	1.2\|692303\|30\|NZ_CP017475\|CRISPRCasFinder	692303-692332	30	CP052830	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1105 plasmid pN17S1105, complete sequence	211357-211386	7	0.767
NZ_CP017475_1	1.2\|692303\|30\|NZ_CP017475\|CRISPRCasFinder	692303-692332	30	NZ_CP022662	Salmonella enterica subsp. enterica strain RM11065 plasmid pRM11065-2, complete sequence	73314-73343	7	0.767
NZ_CP017475_1	1.2\|692303\|30\|NZ_CP017475\|CRISPRCasFinder	692303-692332	30	CP052812	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S376 plasmid pN17S0376, complete sequence	19319-19348	7	0.767
NZ_CP017475_1	1.2\|692303\|30\|NZ_CP017475\|CRISPRCasFinder	692303-692332	30	CP052810	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S535 plasmid pN17S0535, complete sequence	230399-230428	7	0.767
NZ_CP017475_1	1.2\|692303\|30\|NZ_CP017475\|CRISPRCasFinder	692303-692332	30	CP052808	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S637 plasmid pN17S0637, complete sequence	11111-11140	7	0.767
NZ_CP017475_1	1.2\|692303\|30\|NZ_CP017475\|CRISPRCasFinder	692303-692332	30	CP052806	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S816 plasmid pN17S0816, complete sequence	182227-182256	7	0.767
NZ_CP017475_1	1.2\|692303\|30\|NZ_CP017475\|CRISPRCasFinder	692303-692332	30	CP052791	Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0552 plasmid pN17S0637, complete sequence	185722-185751	7	0.767
NZ_CP017475_1	1.2\|692303\|30\|NZ_CP017475\|CRISPRCasFinder	692303-692332	30	CP052818	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1509 plasmid pN17S1509, complete sequence	208172-208201	7	0.767
NZ_CP017475_1	1.2\|692303\|30\|NZ_CP017475\|CRISPRCasFinder	692303-692332	30	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	1688442-1688471	7	0.767
NZ_CP017475_1	1.2\|692303\|30\|NZ_CP017475\|CRISPRCasFinder	692303-692332	30	CP052799	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S990 plasmid pN17S0990-1, complete sequence	24105-24134	7	0.767
NZ_CP017475_1	1.2\|692303\|30\|NZ_CP017475\|CRISPRCasFinder	692303-692332	30	CP052795	Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0125 plasmid pN19S0125, complete sequence	264943-264972	7	0.767
NZ_CP017475_1	1.2\|692303\|30\|NZ_CP017475\|CRISPRCasFinder	692303-692332	30	NZ_CP047882	Salmonella enterica subsp. enterica serovar Infantis strain 119944 plasmid pESI, complete sequence	77271-77300	7	0.767
NZ_CP017475_1	1.2\|692303\|30\|NZ_CP017475\|CRISPRCasFinder	692303-692332	30	CP052802	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S976 plasmid pN17S0976, complete sequence	298048-298077	7	0.767
NZ_CP017475_1	1.2\|692303\|30\|NZ_CP017475\|CRISPRCasFinder	692303-692332	30	CP052840	Salmonella enterica subsp. enterica serovar Infantis strain CVM N16S024 plasmid pN16S024, complete sequence	110008-110037	7	0.767
NZ_CP017475_1	1.2\|692303\|30\|NZ_CP017475\|CRISPRCasFinder	692303-692332	30	CP052783	Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0679 plasmid pN19S0679-1, complete sequence	176473-176502	7	0.767
NZ_CP017475_1	1.2\|692303\|30\|NZ_CP017475\|CRISPRCasFinder	692303-692332	30	CP052836	Salmonella enterica subsp. enterica serovar Infantis strain CVM N16S103 plasmid pN16S103, complete sequence	764-793	7	0.767
NZ_CP017475_1	1.2\|692303\|30\|NZ_CP017475\|CRISPRCasFinder	692303-692332	30	CP052779	Salmonella enterica strain 19TN07GT06K-S plasmid pN19S1233, complete sequence	122769-122798	7	0.767
NZ_CP017475_1	1.2\|692303\|30\|NZ_CP017475\|CRISPRCasFinder	692303-692332	30	NZ_CP031362	Salmonella enterica subsp. enterica serovar Heidelberg strain 5 plasmid p3, complete sequence	123173-123202	7	0.767
NZ_CP017475_1	1.2\|692303\|30\|NZ_CP017475\|CRISPRCasFinder	692303-692332	30	CP052828	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1126 plasmid pN17S1126, complete sequence	109328-109357	7	0.767
NZ_CP017475_1	1.2\|692303\|30\|NZ_CP017475\|CRISPRCasFinder	692303-692332	30	CP052826	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1245 plasmid pN17S0637, complete sequence	93338-93367	7	0.767
NZ_CP017475_1	1.2\|692303\|30\|NZ_CP017475\|CRISPRCasFinder	692303-692332	30	NZ_CP016409	Salmonella enterica subsp. enterica serovar Infantis strain FSIS1502916 plasmid pFSIS1502916, complete sequence	77270-77299	7	0.767
NZ_CP017475_1	1.2\|692303\|30\|NZ_CP017475\|CRISPRCasFinder	692303-692332	30	CP052824	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1265 plasmid pN17S1265, complete sequence	73851-73880	7	0.767
NZ_CP017475_1	1.2\|692303\|30\|NZ_CP017475\|CRISPRCasFinder	692303-692332	30	CP052822	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1349 plasmid pN17S1349, complete sequence	93338-93367	7	0.767
NZ_CP017475_1	1.2\|692303\|30\|NZ_CP017475\|CRISPRCasFinder	692303-692332	30	NZ_CP016407	Salmonella enterica subsp. enterica serovar Infantis strain FSIS1502169 plasmid pFSIS1502169, complete sequence	77270-77299	7	0.767
NZ_CP017475_1	1.2\|692303\|30\|NZ_CP017475\|CRISPRCasFinder	692303-692332	30	CP052820	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1442 plasmid pN17S1442, complete sequence	77270-77299	7	0.767
NZ_CP017475_1	1.2\|692303\|30\|NZ_CP017475\|CRISPRCasFinder	692303-692332	30	NZ_CP016413	Salmonella enterica subsp. enterica serovar Infantis strain CVM44454 plasmid pCVM44454, complete sequence	77270-77299	7	0.767
NZ_CP017475_1	1.2\|692303\|30\|NZ_CP017475\|CRISPRCasFinder	692303-692332	30	NZ_CP016411	Salmonella enterica subsp. enterica serovar Infantis strain N55391 plasmid pN55391, complete sequence	77270-77299	7	0.767
NZ_CP017475_1	1.2\|692303\|30\|NZ_CP017475\|CRISPRCasFinder	692303-692332	30	CP052816	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1598 plasmid pN17S1598	147671-147700	7	0.767
NZ_CP017475_1	1.2\|692303\|30\|NZ_CP017475\|CRISPRCasFinder	692303-692332	30	CP052814	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S349 plasmid pN17S0349, complete sequence	81463-81492	7	0.767
NZ_CP017475_1	1.1\|692249\|30\|NZ_CP017475\|CRISPRCasFinder	692249-692278	30	NC_022049	Paracoccus aminophilus JCM 7686 plasmid pAMI4, complete sequence	341179-341208	8	0.733
NZ_CP017475_1	1.2\|692303\|30\|NZ_CP017475\|CRISPRCasFinder	692303-692332	30	KP881232	Sinorhizobium phage phiM9, complete genome	86166-86195	8	0.733
NZ_CP017475_1	1.1\|692249\|30\|NZ_CP017475\|CRISPRCasFinder	692249-692278	30	MF417874	Uncultured Caudovirales phage clone 3S_14, partial genome	5991-6020	9	0.7
NZ_CP017475_1	1.1\|692249\|30\|NZ_CP017475\|CRISPRCasFinder	692249-692278	30	NZ_CP049244	Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence	707379-707408	9	0.7

1. spacer 1.1|692249|30|NZ_CP017475|CRISPRCasFinder matches to NZ_CP013600 (Rhizobium sp. N741 plasmid pRspN741e, complete sequence) position: , mismatch: 6, identity: 0.8

caccaccgtcgccgttatcattgccgccgc	CRISPR spacer
cgtctccgtcgccgtcatcatcgccgccgg	Protospacer
*..* **********.*****.*******

2. spacer 1.1|692249|30|NZ_CP017475|CRISPRCasFinder matches to NZ_CP013504 (Rhizobium esperanzae strain N561 plasmid pRspN561d, complete sequence) position: , mismatch: 6, identity: 0.8

caccaccgtcgccgttatcattgccgccgc	CRISPR spacer
cgtctccgtcgccgtcatcatcgccgccgg	Protospacer
*..* **********.*****.*******

3. spacer 1.1|692249|30|NZ_CP017475|CRISPRCasFinder matches to NZ_CP013510 (Rhizobium sp. N1341 plasmid pRspN1341e, complete sequence) position: , mismatch: 6, identity: 0.8

caccaccgtcgccgttatcattgccgccgc	CRISPR spacer
cgtctccgtcgccgtcatcatcgccgccgg	Protospacer
*..* **********.*****.*******

4. spacer 1.1|692249|30|NZ_CP017475|CRISPRCasFinder matches to NZ_CP013521 (Rhizobium sp. N113 plasmid pRspN113d, complete sequence) position: , mismatch: 6, identity: 0.8

caccaccgtcgccgttatcattgccgccgc	CRISPR spacer
cgtctccgtcgccgtcatcatcgccgccgg	Protospacer
*..* **********.*****.*******

5. spacer 1.1|692249|30|NZ_CP017475|CRISPRCasFinder matches to NZ_CP013494 (Rhizobium sp. N6212 plasmid pRspN6212d, complete sequence) position: , mismatch: 6, identity: 0.8

caccaccgtcgccgttatcattgccgccgc	CRISPR spacer
cgtctccgtcgccgtcatcatcgccgccgg	Protospacer
*..* **********.*****.*******

6. spacer 1.1|692249|30|NZ_CP017475|CRISPRCasFinder matches to NZ_CP013594 (Rhizobium sp. N871 plasmid pRspN871d, complete sequence) position: , mismatch: 6, identity: 0.8

caccaccgtcgccgttatcattgccgccgc	CRISPR spacer
cgtctccgtcgccgtcatcatcgccgccgg	Protospacer
*..* **********.*****.*******

7. spacer 1.1|692249|30|NZ_CP017475|CRISPRCasFinder matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 7, identity: 0.767

caccaccgtcgccgttatcattgccgccgc	CRISPR spacer
tattgccaccgccgttaccattgccgccgc	Protospacer
.*...**..********.************

8. spacer 1.2|692303|30|NZ_CP017475|CRISPRCasFinder matches to CP052797 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N18S2039 plasmid pN18S2039, complete sequence) position: , mismatch: 7, identity: 0.767

tgccattgtcactgttaccgccattatcag	CRISPR spacer
cgccattgccaccgttaccgccattgcccc	Protospacer
.*******.***.************..*

9. spacer 1.2|692303|30|NZ_CP017475|CRISPRCasFinder matches to CP052804 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S973 plasmid pN17S0973, complete sequence) position: , mismatch: 7, identity: 0.767

tgccattgtcactgttaccgccattatcag	CRISPR spacer
cgccattgccaccgttaccgccattgcccc	Protospacer
.*******.***.************..*

10. spacer 1.2|692303|30|NZ_CP017475|CRISPRCasFinder matches to CP038508 (Salmonella enterica subsp. enterica serovar Infantis strain FARPER-219 plasmid p-F219, complete sequence) position: , mismatch: 7, identity: 0.767

tgccattgtcactgttaccgccattatcag	CRISPR spacer
cgccattgccaccgttaccgccattgcccc	Protospacer
.*******.***.************..*

11. spacer 1.2|692303|30|NZ_CP017475|CRISPRCasFinder matches to CP052788 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0611 plasmid pN19S0611, complete sequence) position: , mismatch: 7, identity: 0.767

tgccattgtcactgttaccgccattatcag	CRISPR spacer
cgccattgccaccgttaccgccattgcccc	Protospacer
.*******.***.************..*

12. spacer 1.2|692303|30|NZ_CP017475|CRISPRCasFinder matches to CP052786 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0641 plasmid pN19S0641, complete sequence) position: , mismatch: 7, identity: 0.767

tgccattgtcactgttaccgccattatcag	CRISPR spacer
cgccattgccaccgttaccgccattgcccc	Protospacer
.*******.***.************..*

13. spacer 1.2|692303|30|NZ_CP017475|CRISPRCasFinder matches to CP052838 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N16S097 plasmid pN16S097, complete sequence) position: , mismatch: 7, identity: 0.767

tgccattgtcactgttaccgccattatcag	CRISPR spacer
cgccattgccaccgttaccgccattgcccc	Protospacer
.*******.***.************..*

14. spacer 1.2|692303|30|NZ_CP017475|CRISPRCasFinder matches to NZ_CP028316 (Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CFSAN067217 plasmid pSC-31-2, complete sequence) position: , mismatch: 7, identity: 0.767

tgccattgtcactgttaccgccattatcag	CRISPR spacer
cgccattgccaccgttaccgccattgcccc	Protospacer
.*******.***.************..*

15. spacer 1.2|692303|30|NZ_CP017475|CRISPRCasFinder matches to CP051676 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1234 plasmid pN16S1234, complete sequence) position: , mismatch: 7, identity: 0.767

tgccattgtcactgttaccgccattatcag	CRISPR spacer
cgccattgccaccgttaccgccattgcccc	Protospacer
.*******.***.************..*

16. spacer 1.2|692303|30|NZ_CP017475|CRISPRCasFinder matches to NZ_CP022063 (Salmonella enterica strain FDAARGOS_312 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.767

tgccattgtcactgttaccgccattatcag	CRISPR spacer
cgccattgccaccgttaccgccattgcccc	Protospacer
.*******.***.************..*

17. spacer 1.2|692303|30|NZ_CP017475|CRISPRCasFinder matches to CP052781 (Salmonella enterica strain CVM N19S0949 plasmid pN19S0949, complete sequence) position: , mismatch: 7, identity: 0.767

tgccattgtcactgttaccgccattatcag	CRISPR spacer
cgccattgccaccgttaccgccattgcccc	Protospacer
.*******.***.************..*

18. spacer 1.2|692303|30|NZ_CP017475|CRISPRCasFinder matches to CP052834 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S041 plasmid pN17S0041, complete sequence) position: , mismatch: 7, identity: 0.767

tgccattgtcactgttaccgccattatcag	CRISPR spacer
cgccattgccaccgttaccgccattgcccc	Protospacer
.*******.***.************..*

19. spacer 1.2|692303|30|NZ_CP017475|CRISPRCasFinder matches to CP052793 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0388 plasmid pN19S0388, complete sequence) position: , mismatch: 7, identity: 0.767

tgccattgtcactgttaccgccattatcag	CRISPR spacer
cgccattgccaccgttaccgccattgcccc	Protospacer
.*******.***.************..*

20. spacer 1.2|692303|30|NZ_CP017475|CRISPRCasFinder matches to CP052832 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1040 plasmid pN17S1040, complete sequence) position: , mismatch: 7, identity: 0.767

tgccattgtcactgttaccgccattatcag	CRISPR spacer
cgccattgccaccgttaccgccattgcccc	Protospacer
.*******.***.************..*

21. spacer 1.2|692303|30|NZ_CP017475|CRISPRCasFinder matches to CP052830 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1105 plasmid pN17S1105, complete sequence) position: , mismatch: 7, identity: 0.767

tgccattgtcactgttaccgccattatcag	CRISPR spacer
cgccattgccaccgttaccgccattgcccc	Protospacer
.*******.***.************..*

22. spacer 1.2|692303|30|NZ_CP017475|CRISPRCasFinder matches to NZ_CP022662 (Salmonella enterica subsp. enterica strain RM11065 plasmid pRM11065-2, complete sequence) position: , mismatch: 7, identity: 0.767

tgccattgtcactgttaccgccattatcag	CRISPR spacer
cgccattgccaccgttaccgccattccccc	Protospacer
.*******.***.************ .*

23. spacer 1.2|692303|30|NZ_CP017475|CRISPRCasFinder matches to CP052812 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S376 plasmid pN17S0376, complete sequence) position: , mismatch: 7, identity: 0.767

tgccattgtcactgttaccgccattatcag	CRISPR spacer
cgccattgccaccgttaccgccattgcccc	Protospacer
.*******.***.************..*

24. spacer 1.2|692303|30|NZ_CP017475|CRISPRCasFinder matches to CP052810 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S535 plasmid pN17S0535, complete sequence) position: , mismatch: 7, identity: 0.767

tgccattgtcactgttaccgccattatcag	CRISPR spacer
cgccattgccaccgttaccgccattgcccc	Protospacer
.*******.***.************..*

25. spacer 1.2|692303|30|NZ_CP017475|CRISPRCasFinder matches to CP052808 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S637 plasmid pN17S0637, complete sequence) position: , mismatch: 7, identity: 0.767

tgccattgtcactgttaccgccattatcag	CRISPR spacer
cgccattgccaccgttaccgccattgcccc	Protospacer
.*******.***.************..*

26. spacer 1.2|692303|30|NZ_CP017475|CRISPRCasFinder matches to CP052806 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S816 plasmid pN17S0816, complete sequence) position: , mismatch: 7, identity: 0.767

tgccattgtcactgttaccgccattatcag	CRISPR spacer
cgccattgccaccgttaccgccattgcccc	Protospacer
.*******.***.************..*

27. spacer 1.2|692303|30|NZ_CP017475|CRISPRCasFinder matches to CP052791 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0552 plasmid pN17S0637, complete sequence) position: , mismatch: 7, identity: 0.767

tgccattgtcactgttaccgccattatcag	CRISPR spacer
cgccattgccaccgttaccgccattgcccc	Protospacer
.*******.***.************..*

28. spacer 1.2|692303|30|NZ_CP017475|CRISPRCasFinder matches to CP052818 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1509 plasmid pN17S1509, complete sequence) position: , mismatch: 7, identity: 0.767

tgccattgtcactgttaccgccattatcag	CRISPR spacer
cgccattgccaccgttaccgccattgcccc	Protospacer
.*******.***.************..*

29. spacer 1.2|692303|30|NZ_CP017475|CRISPRCasFinder matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

tgccattgtcactgttaccgccattatcag	CRISPR spacer
cgccattgccactggtaccgccattcgacg	Protospacer
.*******.***** **********    *

30. spacer 1.2|692303|30|NZ_CP017475|CRISPRCasFinder matches to CP052799 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S990 plasmid pN17S0990-1, complete sequence) position: , mismatch: 7, identity: 0.767

tgccattgtcactgttaccgccattatcag	CRISPR spacer
cgccattgccaccgttaccgccattgcccc	Protospacer
.*******.***.************..*

31. spacer 1.2|692303|30|NZ_CP017475|CRISPRCasFinder matches to CP052795 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0125 plasmid pN19S0125, complete sequence) position: , mismatch: 7, identity: 0.767

tgccattgtcactgttaccgccattatcag	CRISPR spacer
cgccattgccaccgttaccgccattgcccc	Protospacer
.*******.***.************..*

32. spacer 1.2|692303|30|NZ_CP017475|CRISPRCasFinder matches to NZ_CP047882 (Salmonella enterica subsp. enterica serovar Infantis strain 119944 plasmid pESI, complete sequence) position: , mismatch: 7, identity: 0.767

tgccattgtcactgttaccgccattatcag	CRISPR spacer
cgccattgccaccgttaccgccattgcccc	Protospacer
.*******.***.************..*

33. spacer 1.2|692303|30|NZ_CP017475|CRISPRCasFinder matches to CP052802 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S976 plasmid pN17S0976, complete sequence) position: , mismatch: 7, identity: 0.767

tgccattgtcactgttaccgccattatcag	CRISPR spacer
cgccattgccaccgttaccgccattgcccc	Protospacer
.*******.***.************..*

34. spacer 1.2|692303|30|NZ_CP017475|CRISPRCasFinder matches to CP052840 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N16S024 plasmid pN16S024, complete sequence) position: , mismatch: 7, identity: 0.767

tgccattgtcactgttaccgccattatcag	CRISPR spacer
cgccattgccaccgttaccgccattgcccc	Protospacer
.*******.***.************..*

35. spacer 1.2|692303|30|NZ_CP017475|CRISPRCasFinder matches to CP052783 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0679 plasmid pN19S0679-1, complete sequence) position: , mismatch: 7, identity: 0.767

tgccattgtcactgttaccgccattatcag	CRISPR spacer
cgccattgccaccgttaccgccattgcccc	Protospacer
.*******.***.************..*

36. spacer 1.2|692303|30|NZ_CP017475|CRISPRCasFinder matches to CP052836 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N16S103 plasmid pN16S103, complete sequence) position: , mismatch: 7, identity: 0.767

tgccattgtcactgttaccgccattatcag	CRISPR spacer
cgccattgccaccgttaccgccattgcccc	Protospacer
.*******.***.************..*

37. spacer 1.2|692303|30|NZ_CP017475|CRISPRCasFinder matches to CP052779 (Salmonella enterica strain 19TN07GT06K-S plasmid pN19S1233, complete sequence) position: , mismatch: 7, identity: 0.767

tgccattgtcactgttaccgccattatcag	CRISPR spacer
cgccattgccaccgttaccgccattgcccc	Protospacer
.*******.***.************..*

38. spacer 1.2|692303|30|NZ_CP017475|CRISPRCasFinder matches to NZ_CP031362 (Salmonella enterica subsp. enterica serovar Heidelberg strain 5 plasmid p3, complete sequence) position: , mismatch: 7, identity: 0.767

tgccattgtcactgttaccgccattatcag	CRISPR spacer
cgccattgccaccgttaccgccattgcccc	Protospacer
.*******.***.************..*

39. spacer 1.2|692303|30|NZ_CP017475|CRISPRCasFinder matches to CP052828 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1126 plasmid pN17S1126, complete sequence) position: , mismatch: 7, identity: 0.767

tgccattgtcactgttaccgccattatcag	CRISPR spacer
cgccattgccaccgttaccgccattgcccc	Protospacer
.*******.***.************..*

40. spacer 1.2|692303|30|NZ_CP017475|CRISPRCasFinder matches to CP052826 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1245 plasmid pN17S0637, complete sequence) position: , mismatch: 7, identity: 0.767

tgccattgtcactgttaccgccattatcag	CRISPR spacer
cgccattgccaccgttaccgccattgcccc	Protospacer
.*******.***.************..*

41. spacer 1.2|692303|30|NZ_CP017475|CRISPRCasFinder matches to NZ_CP016409 (Salmonella enterica subsp. enterica serovar Infantis strain FSIS1502916 plasmid pFSIS1502916, complete sequence) position: , mismatch: 7, identity: 0.767

tgccattgtcactgttaccgccattatcag	CRISPR spacer
cgccattgccaccgttaccgccattgcccc	Protospacer
.*******.***.************..*

42. spacer 1.2|692303|30|NZ_CP017475|CRISPRCasFinder matches to CP052824 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1265 plasmid pN17S1265, complete sequence) position: , mismatch: 7, identity: 0.767

tgccattgtcactgttaccgccattatcag	CRISPR spacer
cgccattgccaccgttaccgccattgcccc	Protospacer
.*******.***.************..*

43. spacer 1.2|692303|30|NZ_CP017475|CRISPRCasFinder matches to CP052822 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1349 plasmid pN17S1349, complete sequence) position: , mismatch: 7, identity: 0.767

tgccattgtcactgttaccgccattatcag	CRISPR spacer
cgccattgccaccgttaccgccattgcccc	Protospacer
.*******.***.************..*

44. spacer 1.2|692303|30|NZ_CP017475|CRISPRCasFinder matches to NZ_CP016407 (Salmonella enterica subsp. enterica serovar Infantis strain FSIS1502169 plasmid pFSIS1502169, complete sequence) position: , mismatch: 7, identity: 0.767

tgccattgtcactgttaccgccattatcag	CRISPR spacer
cgccattgccaccgttaccgccattgcccc	Protospacer
.*******.***.************..*

45. spacer 1.2|692303|30|NZ_CP017475|CRISPRCasFinder matches to CP052820 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1442 plasmid pN17S1442, complete sequence) position: , mismatch: 7, identity: 0.767

tgccattgtcactgttaccgccattatcag	CRISPR spacer
cgccattgccaccgttaccgccattgcccc	Protospacer
.*******.***.************..*

46. spacer 1.2|692303|30|NZ_CP017475|CRISPRCasFinder matches to NZ_CP016413 (Salmonella enterica subsp. enterica serovar Infantis strain CVM44454 plasmid pCVM44454, complete sequence) position: , mismatch: 7, identity: 0.767

tgccattgtcactgttaccgccattatcag	CRISPR spacer
cgccattgccaccgttaccgccattgcccc	Protospacer
.*******.***.************..*

47. spacer 1.2|692303|30|NZ_CP017475|CRISPRCasFinder matches to NZ_CP016411 (Salmonella enterica subsp. enterica serovar Infantis strain N55391 plasmid pN55391, complete sequence) position: , mismatch: 7, identity: 0.767

tgccattgtcactgttaccgccattatcag	CRISPR spacer
cgccattgccaccgttaccgccattgcccc	Protospacer
.*******.***.************..*

48. spacer 1.2|692303|30|NZ_CP017475|CRISPRCasFinder matches to CP052816 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1598 plasmid pN17S1598) position: , mismatch: 7, identity: 0.767

tgccattgtcactgttaccgccattatcag	CRISPR spacer
cgccattgccaccgttaccgccattgcccc	Protospacer
.*******.***.************..*

49. spacer 1.2|692303|30|NZ_CP017475|CRISPRCasFinder matches to CP052814 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S349 plasmid pN17S0349, complete sequence) position: , mismatch: 7, identity: 0.767

tgccattgtcactgttaccgccattatcag	CRISPR spacer
cgccattgccaccgttaccgccattgcccc	Protospacer
.*******.***.************..*

50. spacer 1.1|692249|30|NZ_CP017475|CRISPRCasFinder matches to NC_022049 (Paracoccus aminophilus JCM 7686 plasmid pAMI4, complete sequence) position: , mismatch: 8, identity: 0.733

caccaccgtcgccgttatcattgccgccgc	CRISPR spacer
ggtttcggtcgccgatatcatggccgccgc	Protospacer
 ... * ******* ****** ********

51. spacer 1.2|692303|30|NZ_CP017475|CRISPRCasFinder matches to KP881232 (Sinorhizobium phage phiM9, complete genome) position: , mismatch: 8, identity: 0.733

tgccattgtcactgttaccgccattatcag	CRISPR spacer
tgccattgccaccgttaccgccagctccgc	Protospacer
********.***.********** . .*.

52. spacer 1.1|692249|30|NZ_CP017475|CRISPRCasFinder matches to MF417874 (Uncultured Caudovirales phage clone 3S_14, partial genome) position: , mismatch: 9, identity: 0.7

caccaccgtcgccgttatcattgccgccgc	CRISPR spacer
gcccagcgtagccgttatcattgccaaacg	Protospacer
  *** *** ***************.

53. spacer 1.1|692249|30|NZ_CP017475|CRISPRCasFinder matches to NZ_CP049244 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.7

caccaccgtcgccgttatcattgccgccgc	CRISPR spacer
aaagcccgtcgccgttatcatcgccgaaat	Protospacer
 *   ****************.****  ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

967923 : 1008814

Enterobacteria_phage(20.0%)

capsid,transposase,integrase

attL 962270:962287|attR 1000179:1000196

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
962270:962287	attL	NA	NA	NA	NA
WP_032620201.1\|967923_968484_-\|integrase	tyrosine-type recombinase/integrase	A0A1S5SCL7	Streptococcus_phage	3.4e-16	33.5
WP_061855978.1\|970452_970899_+	hypothetical protein	NA	NA	NA	NA
WP_001021945.1\|970985_971189_+	hypothetical protein	NA	NA	NA	NA
WP_061855977.1\|971869_972391_+	hypothetical protein	NA	NA	NA	NA
WP_061855976.1\|972644_972977_+	hypothetical protein	K4I147	Salmonella_phage	6.6e-07	71.8
WP_095908432.1\|973246_975172_+	tape measure protein	A0A0S1S2C7	Klebsiella_phage	1.6e-49	32.2
WP_095907382.1\|975815_976160_+	hypothetical protein	NA	NA	NA	NA
WP_095907383.1\|976178_977195_+\|capsid	major capsid protein	NA	NA	NA	NA
WP_061855972.1\|977257_977470_+	hypothetical protein	NA	NA	NA	NA
WP_061855971.1\|977593_978064_+	hypothetical protein	NA	NA	NA	NA
WP_061855970.1\|978109_979321_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_095907384.1\|979636_980815_+\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	3.1e-123	55.9
WP_013095748.1\|980811_981663_+	hypothetical protein	NA	NA	NA	NA
WP_058688253.1\|981818_981974_+	AlpA family transcriptional regulator	NA	NA	NA	NA
WP_095907385.1\|981933_982872_+	hypothetical protein	NA	NA	NA	NA
WP_044158865.1\|982886_983891_+\|capsid	P2 family phage major capsid protein	F1BUM2	Cronobacter_phage	1.1e-73	45.5
WP_077681917.1\|983981_984572_+	ash family protein	Q7M2A7	Enterobacteria_phage	1.2e-22	58.1
WP_095907386.1\|984568_984808_+	hypothetical protein	NA	NA	NA	NA
WP_013095754.1\|984797_985208_+	hypothetical protein	NA	NA	NA	NA
WP_044158864.1\|988169_988442_+	ogr/Delta-like zinc finger family protein	F1BUM8	Cronobacter_phage	2.3e-26	61.6
WP_095907387.1\|989053_990487_+	hypothetical protein	NA	NA	NA	NA
WP_047023471.1\|991141_991456_+	hypothetical protein	NA	NA	NA	NA
WP_095907389.1\|991452_992262_-	DUF4225 domain-containing protein	NA	NA	NA	NA
WP_095907392.1\|992496_993243_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_013095761.1\|993253_993511_-	YjhX family toxin	NA	NA	NA	NA
WP_058661778.1\|993921_994245_+	hypothetical protein	NA	NA	NA	NA
WP_038418758.1\|994428_995100_-	hypothetical protein	NA	NA	NA	NA
WP_095907393.1\|995318_996533_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_038418760.1\|996557_997352_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_038418761.1\|997451_998351_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_038418762.1\|998422_1000207_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	2.1e-19	35.0
1000179:1000196	attR	NA	NA	NA	NA
WP_013095768.1\|1000327_1001437_-	AI-2E family transporter	NA	NA	NA	NA
WP_029882448.1\|1001555_1002737_-	amidohydrolase	NA	NA	NA	NA
WP_095907394.1\|1002748_1003936_-	MFS transporter	NA	NA	NA	NA
WP_095907396.1\|1004063_1004972_+	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	4.4e-05	27.1
WP_013095772.1\|1005209_1006610_+	S-methylmethionine permease	NA	NA	NA	NA
WP_013095773.1\|1006596_1007529_+	homocysteine S-methyltransferase	NA	NA	NA	NA
WP_095907245.1\|1007638_1008814_+\|transposase	IS4 family transposase	S5FM71	Shigella_phage	3.5e-103	48.6

DBSCAN-SWA_2

1140681 : 1208175

Cronobacter_phage(58.82%)

tail,holin,protease,tRNA,plate,portal,terminase,head,integrase,capsid

attL 1135521:1135542|attR 1192668:1192689

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1135521:1135542	attL	NA	NA	NA	NA
WP_010428207.1\|1140681_1141161_-\|tRNA	Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK	NA	NA	NA	NA
WP_095907424.1\|1141360_1142155_-	TraB/GumN family protein	NA	NA	NA	NA
WP_094916001.1\|1142303_1144802_-	copper-exporting P-type ATPase CopA	A0A218MNH6	uncultured_virus	1.0e-112	37.5
WP_095907425.1\|1146446_1148171_-	hypothetical protein	F1BUJ7	Cronobacter_phage	6.8e-180	56.7
WP_095907427.1\|1148174_1148717_-	hypothetical protein	F1BUJ9	Cronobacter_phage	7.1e-43	55.5
WP_095907429.1\|1148688_1149411_-	hypothetical protein	F1BUK1	Cronobacter_phage	3.7e-31	36.9
WP_095908434.1\|1149410_1149926_-\|tail	tail fiber assembly protein	F1BUK2	Cronobacter_phage	1.4e-19	40.3
WP_147720027.1\|1149940_1152277_-\|tail	phage tail protein	F1BUK3	Cronobacter_phage	6.6e-146	51.4
WP_095907430.1\|1152288_1152882_-	hypothetical protein	F1BUK5	Cronobacter_phage	7.0e-76	66.3
WP_095907432.1\|1152874_1154059_-\|plate	baseplate J/gp47 family protein	F1BUK6	Cronobacter_phage	2.1e-156	69.0
WP_095907433.1\|1154051_1154387_-	DUF2590 family protein	F1BUK8	Cronobacter_phage	2.8e-29	59.6
WP_095907435.1\|1154383_1156498_-\|tail	phage tail tape measure protein	F1BUK9	Cronobacter_phage	4.4e-149	42.1
WP_095907436.1\|1156499_1156679_-	hypothetical protein	A5X9I8	Aeromonas_virus	2.2e-09	67.4
WP_095907437.1\|1156687_1156957_-\|tail	putative phage tail assembly chaperone	NA	NA	NA	NA
WP_095907439.1\|1157062_1157443_-	hypothetical protein	A0A2I6PD12	Escherichia_phage	9.2e-05	36.0
WP_095907441.1\|1157442_1157781_-	M15 family metallopeptidase	F1BUL3	Cronobacter_phage	1.6e-45	86.1
WP_048962605.1\|1157767_1158079_-\|holin	holin	NA	NA	NA	NA
WP_095907443.1\|1158083_1158542_-	DUF2597 family protein	A5X9I1	Aeromonas_virus	1.8e-39	53.4
WP_095907444.1\|1158544_1159687_-	DUF2586 family protein	F1BUL5	Cronobacter_phage	9.5e-130	63.2
WP_147720029.1\|1159689_1160388_-	hypothetical protein	F1BUL6	Cronobacter_phage	8.0e-71	60.1
WP_095907448.1\|1160381_1160858_-\|tail	phage tail protein	F1BUL7	Cronobacter_phage	9.1e-26	39.7
WP_095907450.1\|1160854_1161328_-\|head	head completion/stabilization protein	F1BUL8	Cronobacter_phage	3.8e-32	55.8
WP_095907452.1\|1161431_1162136_-\|terminase	terminase	F1BUM0	Cronobacter_phage	4.5e-74	60.9
WP_095907453.1\|1162138_1163173_-\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	1.8e-95	53.8
WP_095907454.1\|1163201_1164263_-\|capsid	GPO family capsid scaffolding protein	F1BUM4	Cronobacter_phage	6.5e-32	43.0
WP_095907456.1\|1164438_1166256_+	hypothetical protein	F1BUM5	Cronobacter_phage	1.5e-185	54.4
WP_095907458.1\|1166252_1167317_+\|portal	phage portal protein	F1BUM7	Cronobacter_phage	1.2e-123	60.3
WP_072203346.1\|1167373_1167640_+	ogr/Delta-like zinc finger family protein	F1BUM8	Cronobacter_phage	3.3e-25	55.7
WP_095907460.1\|1167686_1167905_-	hypothetical protein	NA	NA	NA	NA
WP_095907461.1\|1168014_1170627_-	replication endonuclease	A0A1S6L028	Salmonella_phage	8.5e-126	36.9
WP_095907462.1\|1170619_1171519_-	DNA cytosine methyltransferase	A0A0M3ULA1	Salmonella_phage	1.3e-97	56.3
WP_095907463.1\|1171515_1171743_-	hypothetical protein	NA	NA	NA	NA
WP_095907464.1\|1171742_1172717_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A0M4QWR0	Salmonella_phage	1.0e-103	61.3
WP_095907465.1\|1172786_1173176_-	hypothetical protein	NA	NA	NA	NA
WP_095907466.1\|1173192_1173414_-	DUF2724 domain-containing protein	A0A0M4S6M9	Salmonella_phage	4.2e-10	48.5
WP_095907467.1\|1173550_1173778_+	hypothetical protein	NA	NA	NA	NA
WP_147720031.1\|1173786_1174038_-	hypothetical protein	NA	NA	NA	NA
WP_095908435.1\|1174034_1174370_-	hypothetical protein	NA	NA	NA	NA
WP_095907468.1\|1174619_1174919_+	helix-turn-helix transcriptional regulator	Q1JS29	Enterobacteria_phage	9.7e-26	55.6
WP_095907469.1\|1174988_1176011_+\|integrase	tyrosine-type recombinase/integrase	A0A0F7LA05	Escherichia_phage	2.9e-93	50.2
WP_013095907.1\|1176097_1176508_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA
WP_020685017.1\|1176504_1176957_-	NfeD family protein	NA	NA	NA	NA
WP_008499312.1\|1176953_1177868_-	SPFH/Band 7/PHB domain protein	NA	NA	NA	NA
WP_038982815.1\|1178030_1178702_+	iron ABC transporter ATP-binding protein FetA	G3M9Y6	Bacillus_virus	9.8e-26	35.7
WP_020685020.1\|1178694_1179477_+	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA
WP_013095911.1\|1179525_1180380_-	co-chaperone YbbN	NA	NA	NA	NA
WP_062856591.1\|1180438_1181209_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_013095913.1\|1181237_1181861_-\|protease	multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1	NA	NA	NA	NA
WP_013095914.1\|1181831_1182518_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.2e-33	36.4
WP_095907470.1\|1182514_1184929_+	ABC transporter permease	NA	NA	NA	NA
WP_013095916.1\|1185111_1186257_+	porin	NA	NA	NA	NA
WP_095907471.1\|1186380_1187451_-\|tRNA	tRNA 2-selenouridine(34) synthase MnmH	NA	NA	NA	NA
WP_095907472.1\|1187546_1188614_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_013095919.1\|1188610_1189120_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	NA	NA	NA
WP_020685024.1\|1189281_1189467_-	hypothetical protein	NA	NA	NA	NA
WP_013095921.1\|1189532_1189742_-	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_023620084.1\|1189882_1190605_-	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA
WP_020685026.1\|1190608_1191103_-	peptidylprolyl isomerase B	NA	NA	NA	NA
WP_020685027.1\|1191277_1192663_+\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	1.1e-44	34.8
WP_095907473.1\|1192752_1193280_-	metal-dependent hydrolase	NA	NA	NA	NA
1192668:1192689	attR	NA	NA	NA	NA
WP_020685029.1\|1193354_1194371_-	Mal regulon transcriptional regulator MalI	NA	NA	NA	NA
WP_014830936.1\|1194454_1195954_-	PTS transporter subunit EIIC	NA	NA	NA	NA
WP_013095928.1\|1196189_1196402_-	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_013095929.1\|1196403_1197270_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	6.5e-30	34.5
WP_013095930.1\|1197581_1198145_+	type 1 fimbrial protein subunit FimA	NA	NA	NA	NA
WP_013095931.1\|1198213_1198759_+	type 1 fimbrial protein subunit FimI	NA	NA	NA	NA
WP_013095932.1\|1198793_1199486_+	type 1 fimbria chaperone FimC	NA	NA	NA	NA
WP_095907474.1\|1199500_1202065_+	fimbrial biogenesis usher protein	NA	NA	NA	NA
WP_020685033.1\|1202078_1203083_+	type 1 fimbrin D-mannose specific adhesin FimH	NA	NA	NA	NA
WP_013095935.1\|1203092_1203617_+	fimbria assembly protein	NA	NA	NA	NA
WP_013095936.1\|1203668_1204301_-	fimbria biosynthesis transcriptional regulator FimZ	NA	NA	NA	NA
WP_095907475.1\|1205106_1205829_-	response regulator transcription factor	NA	NA	NA	NA
WP_095907476.1\|1205853_1206552_-	EAL domain-containing protein	NA	NA	NA	NA
WP_094085173.1\|1207344_1208175_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_3

1653714 : 1751680

Enterobacteria_phage(26.19%)

tail,protease,tRNA,plate,portal,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013097296.1\|1653714_1654494_+\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA
WP_013097295.1\|1654497_1655820_+	chromosome partition protein MukF	NA	NA	NA	NA
WP_013097294.1\|1655800_1656505_+	chromosome partition protein MukE	NA	NA	NA	NA
WP_095907584.1\|1656504_1660953_+	chromosome partition protein MukB	NA	NA	NA	NA
WP_095907585.1\|1661132_1662956_+	L,D-transpeptidase	NA	NA	NA	NA
WP_013097290.1\|1663130_1663682_+	YcbK family protein	NA	NA	NA	NA
WP_013097289.1\|1663702_1664350_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_029882979.1\|1664407_1665598_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
WP_047023996.1\|1665782_1666871_-	porin	Q1MVN1	Enterobacteria_phage	1.0e-101	53.1
WP_045902761.1\|1667476_1668877_-\|tRNA	asparagine--tRNA ligase	A0A2K9V902	Bandra_megavirus	1.1e-79	36.1
WP_029882976.1\|1669042_1670245_-	nicotinate phosphoribosyltransferase	A0A2L0UZQ6	Agrobacterium_phage	4.9e-44	31.6
WP_095907586.1\|1670429_1671722_-	DUF3596 domain-containing protein	S4TSP2	Salmonella_phage	2.1e-242	94.9
WP_095907587.1\|1671766_1672024_-	excisionase family protein	S4TND0	Salmonella_phage	6.8e-36	90.0
WP_095907588.1\|1672007_1672394_-	hypothetical protein	NA	NA	NA	NA
WP_063855844.1\|1672393_1672972_-	hypothetical protein	A0A286S1S7	Klebsiella_phage	7.5e-75	67.7
WP_048703186.1\|1673014_1673842_-\|protease	serine protease	Q8W654	Enterobacteria_phage	1.1e-111	84.7
WP_045326846.1\|1673838_1674033_-	hypothetical protein	NA	NA	NA	NA
WP_095907589.1\|1674044_1674455_-	hypothetical protein	A0A286S1S2	Klebsiella_phage	2.6e-45	68.4
WP_147720036.1\|1674444_1675038_-	HNH endonuclease	A0A2I7S010	Vibrio_phage	9.8e-38	47.5
WP_095907592.1\|1675256_1675622_-	hypothetical protein	A0A286S1Q6	Klebsiella_phage	1.6e-51	86.7
WP_047063474.1\|1675614_1675830_-	hypothetical protein	NA	NA	NA	NA
WP_095908439.1\|1676021_1676249_-	hypothetical protein	NA	NA	NA	NA
WP_147720038.1\|1676352_1676580_-	hypothetical protein	Q8W649	Enterobacteria_phage	3.2e-05	36.5
WP_095907593.1\|1676717_1677374_-	helix-turn-helix domain-containing protein	Q8W648	Enterobacteria_phage	1.5e-95	74.8
WP_095907594.1\|1677480_1677696_+	hypothetical protein	Q8W647	Enterobacteria_phage	8.8e-21	74.2
WP_095907596.1\|1678335_1679958_+	DEAD/DEAH box helicase	A0A286N2P9	Klebsiella_phage	1.8e-275	88.3
WP_095907597.1\|1679954_1680926_+	toprim domain-containing protein	A0A286N2Q0	Klebsiella_phage	4.4e-152	80.4
WP_095907598.1\|1680922_1681705_+	antitermination protein	F1C595	Cronobacter_phage	3.5e-107	75.2
WP_095907599.1\|1682300_1683248_+	Shiga toxin subunit A	Q777W4	Enterobacteria_phage	3.3e-152	86.0
WP_095907600.1\|1683257_1683527_+	Shiga toxin Stx1 subunit B	Q94LZ9	Enterobacteria_phage	3.1e-39	92.1
WP_095907601.1\|1683761_1684475_+	hypothetical protein	NA	NA	NA	NA
WP_095907602.1\|1684939_1685242_+	hypothetical protein	O64361	Escherichia_phage	4.1e-32	67.3
WP_095907603.1\|1685241_1685778_+	lysozyme	K7PM52	Enterobacteria_phage	3.1e-91	90.2
WP_095908440.1\|1685774_1686293_+	hypothetical protein	K7PHH7	Enterobacteria_phage	9.7e-74	81.3
WP_095907604.1\|1687213_1687645_-	hypothetical protein	NA	NA	NA	NA
WP_147720040.1\|1687649_1687868_+	hypothetical protein	NA	NA	NA	NA
WP_095907606.1\|1688055_1688550_+	DUF1441 family protein	A0A291AWV8	Escherichia_phage	3.7e-54	68.9
WP_095907607.1\|1688549_1690679_+\|terminase	phage terminase large subunit family protein	A5LH27	Enterobacteria_phage	5.1e-302	74.9
WP_057071484.1\|1690675_1690891_+	hypothetical protein	NA	NA	NA	NA
WP_095907608.1\|1690899_1692420_+\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	1.3e-155	56.0
WP_095907609.1\|1692409_1694488_+\|protease	Clp protease ClpP	A0A1B0YZU0	Pseudomonas_phage	1.5e-197	57.9
WP_095907610.1\|1694557_1694893_+	DUF2190 family protein	Q9EYD5	Enterobacteria_phage	5.2e-12	44.5
WP_095907611.1\|1694892_1695249_+	hypothetical protein	NA	NA	NA	NA
WP_095907612.1\|1695250_1695913_+	hypothetical protein	R9TR34	Vibrio_phage	2.5e-21	36.2
WP_095907613.1\|1695921_1696476_+	hypothetical protein	NA	NA	NA	NA
WP_095907614.1\|1696468_1697092_+\|plate	phage baseplate assembly protein V	A0A1B2LRU5	Wolbachia_phage	9.4e-15	38.6
WP_095907615.1\|1697130_1698600_+\|tail	phage tail sheath subtilisin-like domain-containing protein	R9TMQ0	Vibrio_phage	2.5e-74	37.1
WP_095907616.1\|1698596_1699103_+\|tail	phage major tail tube protein	NA	NA	NA	NA
WP_095907617.1\|1699159_1699447_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_095907618.1\|1699561_1701421_+	hypothetical protein	A0A2I7R3J9	Vibrio_phage	4.2e-26	31.7
WP_053085150.1\|1701417_1701888_+\|tail	phage tail protein	D4HTW5	Vibrio_phage	4.2e-15	34.1
WP_048701713.1\|1701862_1702078_+\|tail	tail protein X	NA	NA	NA	NA
WP_095907619.1\|1702079_1703198_+	late control protein D	R9TNM7	Vibrio_phage	1.9e-37	33.4
WP_047463054.1\|1703236_1703599_+	GPW/gp25 family protein	D4HTV2	Vibrio_phage	1.3e-21	49.1
WP_095907620.1\|1703573_1704491_+\|plate	baseplate J/gp47 family protein	A0A088FQL4	Escherichia_phage	5.6e-64	49.2
WP_095907621.1\|1704483_1705047_+\|tail	phage tail protein I	A0A193GYD1	Enterobacter_phage	1.6e-29	45.0
WP_095908442.1\|1706367_1706883_+\|tail	tail fiber assembly protein	F1BUK2	Cronobacter_phage	2.2e-33	56.1
WP_095907622.1\|1706972_1707245_-	colicin immunity protein	NA	NA	NA	NA
WP_157735657.1\|1707241_1708531_-	S-type pyocin domain-containing protein	NA	NA	NA	NA
WP_095908443.1\|1708840_1709827_-	SppA protein	NA	NA	NA	NA
WP_029882975.1\|1710693_1713306_+	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	2.4e-19	22.4
WP_038419036.1\|1713357_1714128_-	aliphatic sulfonates ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.5e-30	38.0
WP_048972455.1\|1714124_1714916_-	aliphatic sulfonate ABC transporter permease SsuC	NA	NA	NA	NA
WP_095907624.1\|1714925_1716071_-	FMNH2-dependent alkanesulfonate monooxygenase	NA	NA	NA	NA
WP_023619891.1\|1716067_1717030_-	sulfonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_095907625.1\|1717022_1717598_-	NADPH-dependent FMN reductase	NA	NA	NA	NA
WP_013097269.1\|1717847_1718858_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_020689696.1\|1719023_1719566_+	cell division protein ZapC	NA	NA	NA	NA
WP_095907626.1\|1719562_1720672_-	YcbX family protein	V5UTY8	Synechococcus_phage	2.9e-06	42.0
WP_095907627.1\|1720772_1722881_+	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA
WP_095907628.1\|1722893_1724801_+	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	7.3e-50	28.3
WP_095907629.1\|1724814_1726068_+	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA
WP_095907630.1\|1726072_1727713_+	intermembrane transport protein PqiB	NA	NA	NA	NA
WP_095907631.1\|1727709_1728276_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_013097261.1\|1728532_1728700_+	ribosome modulation factor	NA	NA	NA	NA
WP_013097260.1\|1728772_1729291_-	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA
WP_038985584.1\|1729359_1731120_-\|protease	Lon protease family protein	NA	NA	NA	NA
WP_013097258.1\|1731306_1731759_+	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_044158562.1\|1731822_1732878_-	porin OmpA	NA	NA	NA	NA
WP_013097256.1\|1733232_1733742_-	cell division inhibitor SulA	NA	NA	NA	NA
WP_095907632.1\|1733959_1734586_+	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA
WP_095907633.1\|1734542_1736705_-	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_013097253.1\|1736724_1737171_-	YccF domain-containing protein	NA	NA	NA	NA
WP_095907634.1\|1737293_1739348_+	DNA helicase IV	A7KV33	Bacillus_phage	4.6e-18	27.5
WP_013097251.1\|1739431_1739890_-	methylglyoxal synthase	NA	NA	NA	NA
WP_047351962.1\|1739970_1740633_-	DUF2057 family protein	NA	NA	NA	NA
WP_020689684.1\|1740803_1741220_+	CoA-binding protein	NA	NA	NA	NA
WP_013097248.1\|1741253_1741571_-	heat shock protein HspQ	NA	NA	NA	NA
WP_095907635.1\|1741631_1742822_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
WP_013097246.1\|1742914_1743196_+	acylphosphatase	NA	NA	NA	NA
WP_047351965.1\|1743192_1743522_-	sulfurtransferase TusE	NA	NA	NA	NA
WP_095907636.1\|1743591_1744143_-	response regulator transcription factor	NA	NA	NA	NA
WP_095907637.1\|1744153_1745311_-\|tail	phage tail protein	NA	NA	NA	NA
WP_095907638.1\|1745312_1748030_-	TcfC E-set like domain-containing protein	NA	NA	NA	NA
WP_047351968.1\|1748102_1748609_-	fimbrial protein	NA	NA	NA	NA
WP_095907639.1\|1748683_1749433_-	fimbrial protein	NA	NA	NA	NA
WP_047351970.1\|1749735_1750491_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_047351971.1\|1750487_1750964_+	hypothetical protein	NA	NA	NA	NA
WP_013097244.1\|1751020_1751680_-\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	8.9e-48	54.9

DBSCAN-SWA_4

2991563 : 3032099

Cronobacter_phage(37.21%)

tail,transposase,terminase,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_095907962.1\|2991563_2992232_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	2.4e-77	58.1
WP_095907963.1\|2992242_2992560_-	hypothetical protein	K7PGV5	Enterobacterial_phage	1.9e-24	55.8
WP_095907964.1\|2992559_2992799_-	hypothetical protein	K7P7N3	Enterobacteria_phage	1.2e-26	70.5
WP_095908452.1\|2992912_2993275_+	GtrA family protein	U5P0S6	Shigella_phage	7.6e-49	82.5
WP_095907965.1\|2993271_2994189_+	glycosyltransferase family 2 protein	U5P087	Shigella_phage	8.3e-161	91.1
WP_095907966.1\|2994189_2995827_+	hypothetical protein	B9UDL6	Salmonella_phage	1.4e-86	36.4
WP_095907967.1\|2995850_2998070_-	hypothetical protein	B1GS50	Salmonella_phage	3.8e-58	68.4
WP_095907968.1\|2998129_3000607_-\|tail	phage tail protein	F1C5A7	Cronobacter_phage	0.0e+00	89.6
WP_095907969.1\|3000593_3000986_-	C40 family peptidase	F1C5F2	Cronobacter_phage	2.8e-65	89.5
WP_095907970.1\|3000995_3001466_-	hypothetical protein	F1C5F1	Cronobacter_phage	2.0e-78	91.7
WP_016245414.1\|3001465_3001963_-	hypothetical protein	F1C5F0	Cronobacter_phage	3.5e-89	91.5
WP_017693207.1\|3002004_3002232_-	hypothetical protein	NA	NA	NA	NA
WP_095907971.1\|3002242_3004918_-	tape measure protein	A0A1B1W284	Salmonella_phage	1.1e-104	39.7
WP_095908453.1\|3004961_3005291_-	hypothetical protein	A0A222YZ97	Escherichia_phage	1.8e-25	57.5
WP_095907972.1\|3005399_3006095_-	hypothetical protein	G0ZNE7	Cronobacter_phage	8.2e-68	56.2
WP_032104685.1\|3006145_3006898_-	Ig domain-containing protein	G0ZNE6	Cronobacter_phage	3.4e-43	45.1
WP_095907973.1\|3006967_3007357_-	hypothetical protein	G0ZNE4	Cronobacter_phage	1.2e-31	49.2
WP_032668719.1\|3007353_3007722_-	hypothetical protein	F1C5E3	Cronobacter_phage	1.4e-47	78.7
WP_095907975.1\|3007963_3008314_-	hypothetical protein	G0ZNE2	Cronobacter_phage	5.8e-38	65.2
WP_006820518.1\|3008313_3008487_-	hypothetical protein	Q5G8X7	Enterobacteria_phage	7.8e-12	49.1
WP_045907349.1\|3008486_3008867_-	hypothetical protein	F1C5E2	Cronobacter_phage	7.0e-29	54.5
WP_095907976.1\|3008869_3009235_-	hypothetical protein	NA	NA	NA	NA
WP_006808954.1\|3009244_3010342_-	hypothetical protein	F1C5E1	Cronobacter_phage	7.6e-161	77.5
WP_095907977.1\|3010352_3010787_-	hypothetical protein	F1C5E0	Cronobacter_phage	2.8e-50	72.2
WP_095907978.1\|3010790_3011987_-	DUF2213 domain-containing protein	F1C5D9	Cronobacter_phage	1.4e-91	48.0
WP_044704353.1\|3012079_3012274_-	hypothetical protein	NA	NA	NA	NA
WP_095907979.1\|3012305_3013316_-\|head	phage head morphogenesis protein	F1C5D8	Cronobacter_phage	2.2e-114	69.4
WP_063452463.1\|3013233_3014682_-	hypothetical protein	F1C5D7	Cronobacter_phage	4.3e-119	50.8
WP_095907980.1\|3014693_3016262_-\|terminase	terminase	G8C7P3	Escherichia_phage	1.3e-302	92.0
WP_063618545.1\|3016258_3016909_-	hypothetical protein	G8C7P2	Escherichia_phage	1.7e-104	91.7
WP_095907981.1\|3017028_3017541_+	hypothetical protein	NA	NA	NA	NA
WP_095907982.1\|3017587_3017806_-	hypothetical protein	NA	NA	NA	NA
WP_001064347.1\|3018011_3018530_-	Rha family transcriptional regulator	Q38450	Enterobacteria_phage	2.9e-94	100.0
WP_047642424.1\|3018826_3019204_-	DUF2570 domain-containing protein	A0A192Y6H8	Salmonella_phage	8.8e-16	39.3
WP_080298902.1\|3019200_3019731_-	lysozyme	I6PBN2	Cronobacter_phage	9.1e-51	62.9
WP_032141950.1\|3019708_3020029_-	hypothetical protein	H6WRZ3	Salmonella_phage	3.7e-39	79.0
WP_087451024.1\|3020824_3021945_-\|transposase	IS3-like element ISSen4 family transposase	S5WIU1	Leptospira_phage	1.7e-51	42.8
WP_045286848.1\|3022665_3023103_+	hypothetical protein	K7P7N6	Enterobacteria_phage	4.6e-77	97.9
WP_058691359.1\|3023390_3023588_+	DUF1482 family protein	NA	NA	NA	NA
WP_095907983.1\|3023657_3024053_+	hypothetical protein	NA	NA	NA	NA
WP_032628892.1\|3024185_3024842_+	exodeoxyribonuclease X	A0A1W5PTR6	Pseudoalteromonas_phage	1.6e-17	31.9
WP_095907984.1\|3024845_3025511_+	ATP-binding protein	A0A2D1GLT5	Escherichia_phage	1.0e-46	45.7
WP_095907985.1\|3025522_3026233_+	hypothetical protein	A0A088C400	Shewanella_sp._phage	5.5e-19	35.2
WP_006809793.1\|3026244_3026397_+	DUF1317 family protein	T1SAR0	Salmonella_phage	1.3e-05	44.2
WP_095907986.1\|3026393_3028175_+	phage N-6-adenine-methyltransferase	A0A1B0V7P0	Salmonella_phage	3.5e-123	50.5
WP_095907987.1\|3028386_3028704_+	hypothetical protein	A0A0U2QV73	Escherichia_phage	8.7e-33	58.4
WP_095907988.1\|3028700_3028892_+	DUF1382 family protein	A0A0P0ZC60	Stx2-converting_phage	2.7e-13	64.4
WP_045897004.1\|3028888_3029131_+	hypothetical protein	NA	NA	NA	NA
WP_131657929.1\|3029446_3029839_+	hypothetical protein	NA	NA	NA	NA
WP_095907989.1\|3029801_3030041_+	DUF4222 domain-containing protein	Q6H9Z8	Enterobacteria_phage	4.9e-12	50.0
WP_095907990.1\|3030050_3030407_+	DUF551 domain-containing protein	NA	NA	NA	NA
WP_015571535.1\|3030512_3030758_+	excisionase family protein	Q8W657	Enterobacteria_phage	9.4e-27	67.9
WP_045348797.1\|3030803_3032099_+	DUF3596 domain-containing protein	Q20GI2	Phage_258-320	5.1e-180	68.9

DBSCAN-SWA_5

3123911 : 3132173

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_095908017.1\|3123911_3124958_-	glycosyltransferase	A0A1V0SL50	Klosneuvirus	3.1e-10	25.0
WP_095908018.1\|3124958_3125879_-	glycosyltransferase	A0A1V0SAH6	Catovirus	1.3e-15	26.9
WP_095908019.1\|3125875_3126436_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.3e-47	54.2
WP_095908020.1\|3126439_3127318_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.5e-106	64.1
WP_095908021.1\|3127370_3128270_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	2.0e-29	35.8
WP_095908022.1\|3128269_3129355_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	9.1e-98	52.5
WP_013097865.1\|3129709_3130606_-	GalU regulator GalF	A0A127AW70	Bacillus_phage	9.0e-43	41.9
WP_048971164.1\|3130781_3132173_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	4.8e-19	32.8

DBSCAN-SWA_6

3302792 : 3311875

Pseudomonas_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020690664.1\|3302792_3305078_+	ribonucleoside-diphosphate reductase subunit alpha	A0A2D1GNB1	Pseudoalteromonas_phage	1.0e-284	64.0
WP_013098012.1\|3305185_3306316_+	ribonucleotide-diphosphate reductase subunit beta	G9IAA3	Pseudomonas_phage	6.0e-177	79.4
WP_013098013.1\|3306315_3306570_+	2Fe-2S ferredoxin-like protein	G9IAA2	Pseudomonas_phage	5.1e-28	67.9
WP_095908055.1\|3306689_3308381_+	GMC family oxidoreductase N-terminal domain-containing protein	A0A1V0S9J5	Catovirus	1.2e-24	30.7
WP_095908056.1\|3308274_3309831_+	GMC family oxidoreductase N-terminal domain-containing protein	A0A1V0S9J5	Catovirus	1.0e-17	28.0
WP_095908057.1\|3309862_3310792_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_013098017.1\|3310816_3311875_-	glycerophosphodiester phosphodiesterase	A0A220BYK6	Staphylococcus_phage	7.7e-09	50.9

DBSCAN-SWA_7

3626368 : 3724753

101

Burkholderia_virus(34.09%)

tail,holin,transposase,tRNA,plate,integrase,capsid

attL 3694680:3694697|attR 3733897:3733914

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_008502493.1\|3626368_3627136_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_013098350.1\|3627167_3627707_-	ribosome maturation factor RimM	NA	NA	NA	NA
WP_003863133.1\|3627722_3627971_-	30S ribosomal protein S16	NA	NA	NA	NA
WP_013098351.1\|3628087_3629449_-	signal recognition particle protein	NA	NA	NA	NA
WP_014832951.1\|3629615_3630407_+	inner membrane protein YpjD	NA	NA	NA	NA
WP_028028086.1\|3630425_3631712_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_013098354.1\|3631764_3632358_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_013098356.1\|3632480_3633359_+	NAD(+) kinase	NA	NA	NA	NA
WP_058682797.1\|3633444_3635106_+	DNA repair protein RecN	NA	NA	NA	NA
WP_003863121.1\|3635244_3635583_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_095908117.1\|3635691_3635979_-	RnfH family protein	NA	NA	NA	NA
WP_023325904.1\|3635968_3636445_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_008502505.1\|3636562_3637045_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	2.3e-29	47.4
WP_087451024.1\|3637684_3638805_-\|transposase	IS3-like element ISSen4 family transposase	S5WIU1	Leptospira_phage	1.7e-51	42.8
WP_095908118.1\|3638889_3640119_+\|integrase	tyrosine-type recombinase/integrase	A0A1B5FPC6	Escherichia_phage	3.5e-207	86.6
WP_095908119.1\|3640213_3642715_-	DEAD/DEAH box helicase family protein	NA	NA	NA	NA
WP_095908120.1\|3642707_3643784_-	hypothetical protein	NA	NA	NA	NA
WP_087451024.1\|3643870_3644990_+\|transposase	IS3-like element ISSen4 family transposase	S5WIU1	Leptospira_phage	1.7e-51	42.8
WP_147720044.1\|3645388_3646375_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_095908123.1\|3648311_3649112_+	DUF4225 domain-containing protein	NA	NA	NA	NA
WP_094916261.1\|3649092_3649404_-	hypothetical protein	NA	NA	NA	NA
WP_094916275.1\|3649790_3650258_+	hypothetical protein	NA	NA	NA	NA
WP_095908455.1\|3650275_3650668_+	hypothetical protein	NA	NA	NA	NA
WP_095908124.1\|3650780_3651791_-	taurine catabolism dioxygenase TauD	NA	NA	NA	NA
WP_013098375.1\|3651878_3652418_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA
WP_062935020.1\|3652407_3653763_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA
WP_095908125.1\|3653871_3655098_-	MFS transporter	NA	NA	NA	NA
WP_095908126.1\|3655094_3655700_-	L-threonylcarbamoyladenylate synthase	NA	NA	NA	NA
WP_038980933.1\|3655712_3656939_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_013098380.1\|3656949_3657426_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
WP_023620864.1\|3657661_3658441_+	Sua5/YciO/YrdC/YwlC family protein	NA	NA	NA	NA
WP_013098382.1\|3658479_3659073_+	Sua5/YciO/YrdC/YwlC family protein	NA	NA	NA	NA
WP_013098383.1\|3659056_3659971_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_095908456.1\|3660311_3661718_+	MFS transporter	NA	NA	NA	NA
WP_013098385.1\|3662076_3662433_+	hypothetical protein	NA	NA	NA	NA
WP_095908127.1\|3663128_3673769_+	BapA prefix-like domain-containing protein	NA	NA	NA	NA
WP_013098387.1\|3673852_3675256_+	TolC family outer membrane protein	NA	NA	NA	NA
WP_045294745.1\|3675252_3677445_+	type I secretion system permease/ATPase	W8CYL7	Bacillus_phage	6.0e-32	30.2
WP_094084808.1\|3677455_3678625_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_072207871.1\|3678948_3679386_+	hypothetical protein	NA	NA	NA	NA
WP_040023501.1\|3679519_3680251_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_013098393.1\|3680349_3680769_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_038420464.1\|3680850_3682032_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_095908128.1\|3682051_3682939_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_095908129.1\|3683036_3683639_+	short chain dehydrogenase	NA	NA	NA	NA
WP_038420951.1\|3683676_3684666_-	transketolase family protein	NA	NA	NA	NA
WP_013098399.1\|3684674_3685520_-	transketolase	NA	NA	NA	NA
WP_095908130.1\|3685532_3686282_-	glucose 1-dehydrogenase	NA	NA	NA	NA
WP_095908131.1\|3686317_3687649_-	MFS transporter	NA	NA	NA	NA
WP_013098402.1\|3687864_3688785_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_095908132.1\|3689498_3690080_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	9.9e-67	72.1
WP_095908457.1\|3690129_3690660_+\|tail	tail fiber protein	A0A0F7LCR3	Escherichia_phage	6.5e-41	52.8
WP_095908133.1\|3690659_3691259_+\|tail	tail fiber assembly protein	A0A218M4J2	Erwinia_phage	2.7e-59	55.3
WP_095908134.1\|3691230_3691839_-\|tail	tail fiber assembly protein	A0A218M4J2	Erwinia_phage	1.8e-66	62.9
WP_095908135.1\|3691838_3692819_-\|tail	phage tail protein	A0A0F7LCR3	Escherichia_phage	1.5e-67	71.5
WP_095908136.1\|3692821_3693400_-\|tail	phage tail protein I	A4JWL7	Burkholderia_virus	1.3e-66	66.3
WP_095908137.1\|3693392_3694496_-\|plate	baseplate J/gp47 family protein	A4JWL6	Burkholderia_virus	2.9e-107	54.0
WP_095908138.1\|3694486_3694834_-	GPW/gp25 family protein	Q6QIA0	Burkholderia_phage	1.7e-34	61.5
3694680:3694697	attL	NA	NA	NA	NA
WP_064783922.1\|3694888_3695401_-\|plate	phage baseplate assembly protein V	A4JWL4	Burkholderia_virus	2.7e-20	37.8
WP_095908139.1\|3695400_3696570_-	phage protein D	Q6QIA2	Burkholderia_phage	1.2e-87	48.1
WP_011410692.1\|3696557_3696773_-\|tail	tail protein X	Q6QIA3	Burkholderia_phage	1.6e-17	57.1
WP_095908140.1\|3696769_3697654_-\|tail	phage tail protein	A4JWL1	Burkholderia_virus	8.9e-51	47.5
WP_095908141.1\|3697653_3700119_-\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	6.5e-168	42.0
WP_095908142.1\|3700214_3700349_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_055311824.1\|3700314_3700629_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_032438844.1\|3700727_3701009_-	hypothetical protein	NA	NA	NA	NA
WP_048994552.1\|3700998_3701292_-	hypothetical protein	A0A1B1PEE7	Pectobacterium_phage	1.9e-10	43.5
WP_001062395.1\|3701293_3701815_-\|tail	phage major tail tube protein	A4JWK6	Burkholderia_virus	1.0e-67	68.8
WP_095908143.1\|3701814_3703242_-\|tail	phage tail sheath subtilisin-like domain-containing protein	A4JWK5	Burkholderia_virus	5.7e-217	78.4
WP_031626631.1\|3703231_3703486_-	hypothetical protein	NA	NA	NA	NA
WP_032637440.1\|3703482_3703947_-	Gp37 family protein	Q6QIB2	Burkholderia_phage	3.7e-40	52.3
WP_000271666.1\|3703946_3704393_-	DUF1320 domain-containing protein	A4JWK2	Burkholderia_virus	1.1e-33	51.7
WP_095908144.1\|3704394_3704751_-	DUF2190 family protein	NA	NA	NA	NA
WP_095908145.1\|3704761_3705715_-	hypothetical protein	A4JWK0	Burkholderia_virus	3.4e-64	43.6
WP_095908146.1\|3705728_3706826_-	peptidase	A4JWJ9	Burkholderia_virus	5.6e-95	49.0
WP_011410686.1\|3707040_3707499_-	phage virion morphogenesis protein	Q6QIB8	Burkholderia_phage	1.3e-29	43.6
WP_095908147.1\|3707501_3708323_-\|capsid	minor capsid protein	Q6QIB9	Burkholderia_phage	9.9e-97	61.5
WP_095908148.1\|3708303_3709800_-	DUF935 domain-containing protein	Q6QIC0	Burkholderia_phage	4.5e-172	61.3
WP_095908149.1\|3709799_3711323_-	hypothetical protein	A4JWJ4	Burkholderia_virus	2.6e-183	62.4
WP_095908150.1\|3711319_3711865_-	DUF3486 family protein	A4JWJ3	Burkholderia_virus	2.7e-58	67.0
WP_006122433.1\|3711864_3712176_-	hypothetical protein	A0A0S4L0A3	Pseudomonas_phage	3.2e-32	63.6
WP_000175096.1\|3712168_3712501_-	hypothetical protein	Q6QIC4	Burkholderia_phage	1.1e-17	47.7
WP_095908151.1\|3712497_3713148_-	hypothetical protein	Q5ZQY9	Pseudomonas_phage	8.3e-06	29.2
WP_095908152.1\|3713131_3713860_-	transglycosylase SLT domain-containing protein	Q5ZQZ1	Pseudomonas_phage	1.9e-62	59.2
WP_095908153.1\|3713862_3714213_-\|holin	putative holin	A4JWP3	Burkholderia_virus	6.9e-23	53.9
WP_095908154.1\|3714588_3715155_-	DUF2441 domain-containing protein	NA	NA	NA	NA
WP_095908155.1\|3715398_3716169_+	DNA adenine methylase	A2I2Y7	Vibrio_virus	5.8e-99	65.7
WP_063930249.1\|3716226_3716493_+	hypothetical protein	NA	NA	NA	NA
WP_054181123.1\|3716613_3716979_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_016191701.1\|3717068_3717257_+	DNA-binding protein	Q5ZQZ9	Pseudomonas_phage	1.8e-17	69.4
WP_020803508.1\|3717309_3717615_+	helix-turn-helix domain-containing protein	Q5ZR02	Pseudomonas_phage	7.1e-24	59.0
WP_095908156.1\|3717624_3718533_+	DUF3102 domain-containing protein	A4JWN3	Burkholderia_virus	3.4e-74	54.1
WP_095908157.1\|3718536_3720306_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	Q6QIE0	Burkholderia_phage	2.0e-227	67.6
WP_095908158.1\|3720316_3721483_+	AAA family ATPase	A4JWN1	Burkholderia_virus	6.3e-121	60.9
WP_000835317.1\|3721485_3721755_+	hypothetical protein	NA	NA	NA	NA
WP_020803510.1\|3721772_3722384_+	DUF3164 family protein	A0A2D1GNM4	Pseudomonas_phage	7.2e-76	68.5
WP_095908159.1\|3722462_3722675_+	hypothetical protein	NA	NA	NA	NA
WP_095908160.1\|3722664_3722868_+	hypothetical protein	NA	NA	NA	NA
WP_095908161.1\|3723044_3723737_+	DUF2786 domain-containing protein	A0A1W6DYA0	Aeromonas_phage	2.2e-25	33.6
WP_071890037.1\|3723733_3723949_+	hypothetical protein	NA	NA	NA	NA
WP_001281697.1\|3724363_3724753_+	DNA-binding protein	Q6QIE8	Burkholderia_phage	3.8e-30	53.4
3733897:3733914	attR	NA	NA	NA	NA

DBSCAN-SWA_8

3997552 : 4054142

Faecalibacterium_phage(20.0%)

transposase,protease,tRNA,plate,integrase

attL 4010712:4010728|attR 4054220:4054236

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003860035.1\|3997552_3998050_+\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA
WP_013098661.1\|3998144_3998852_+	deoxyribonuclease I	NA	NA	NA	NA
WP_013098662.1\|3998904_3999636_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_023620782.1\|3999655_4000603_+	glutathione synthase	NA	NA	NA	NA
WP_013098664.1\|4000689_4001250_+	YqgE/AlgH family protein	NA	NA	NA	NA
WP_006811925.1\|4001249_4001666_+	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_029883139.1\|4001676_4002657_-	type IV pilus twitching motility protein PilT	NA	NA	NA	NA
WP_023620785.1\|4002674_4003376_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_013098667.1\|4003397_4003964_+	YggT family protein	NA	NA	NA	NA
WP_020687057.1\|4003960_4004248_+	YggU family protein	NA	NA	NA	NA
WP_095908227.1\|4004260_4004854_+	XTP/dITP diphosphatase	NA	NA	NA	NA
WP_020687055.1\|4004846_4005995_+	radical SAM family heme chaperone HemW	NA	NA	NA	NA
WP_023621456.1\|4006224_4006941_-	DUF2884 domain-containing protein	NA	NA	NA	NA
WP_003862421.1\|4006997_4007324_-	YggL family protein	NA	NA	NA	NA
WP_020689542.1\|4007323_4008043_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_038983528.1\|4008181_4009240_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_013098674.1\|4009265_4009538_+	oxidative damage protection protein	NA	NA	NA	NA
WP_013098675.1\|4009594_4010671_+	membrane-bound lytic murein transglycosylase MltC	NA	NA	NA	NA
4010712:4010728	attL	NA	NA	NA	NA
WP_013098677.1\|4010944_4012201_+	nucleoside permease	NA	NA	NA	NA
WP_095908228.1\|4012234_4013038_-	triphosphoribosyl-dephospho-CoA synthase CitG	NA	NA	NA	NA
WP_095908229.1\|4013015_4013555_-	citrate lyase holo-[acyl-carrier protein] synthase	NA	NA	NA	NA
WP_095908230.1\|4013557_4015075_-	citrate lyase subunit alpha	NA	NA	NA	NA
WP_013098681.1\|4015085_4015961_-	citrate (pro-3S)-lyase subunit beta	NA	NA	NA	NA
WP_013098682.1\|4015957_4016251_-	citrate lyase acyl carrier protein	NA	NA	NA	NA
WP_013098683.1\|4016267_4017290_-	[citrate (pro-3S)-lyase] ligase	NA	NA	NA	NA
WP_023621451.1\|4017300_4018164_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_013098685.1\|4018181_4019543_-	2-hydroxycarboxylate transporter family protein	NA	NA	NA	NA
WP_126850964.1\|4020004_4021525_+	sensor histidine kinase	NA	NA	NA	NA
WP_013098687.1\|4021514_4022207_+	response regulator	NA	NA	NA	NA
WP_023621449.1\|4022305_4024441_-	ornithine decarboxylase	NA	NA	NA	NA
WP_013098689.1\|4024623_4025337_+	DUF554 domain-containing protein	NA	NA	NA	NA
WP_095908232.1\|4025729_4026692_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_095908233.1\|4028337_4029135_-	hypothetical protein	NA	NA	NA	NA
WP_095908235.1\|4030182_4030851_-	SAM-dependent DNA methyltransferase	A0A2K9V411	Faecalibacterium_phage	2.0e-23	32.3
WP_095908236.1\|4030945_4031881_-	DUF1738 domain-containing protein	A0A1V0EEV1	Caulobacter_phage	5.5e-51	40.1
WP_095908462.1\|4031984_4032293_-	hypothetical protein	NA	NA	NA	NA
WP_095908237.1\|4032417_4032816_-	antirestriction protein	A9J566	Pseudomonas_phage	5.6e-05	32.4
WP_095908463.1\|4032808_4032988_-	hypothetical protein	NA	NA	NA	NA
WP_095908238.1\|4033351_4033633_-	hypothetical protein	NA	NA	NA	NA
WP_095908239.1\|4033946_4034837_-\|integrase	integrase domain-containing protein	NA	NA	NA	NA
WP_095908240.1\|4035868_4036315_+	cold shock domain-containing protein	NA	NA	NA	NA
WP_157735664.1\|4036445_4036913_-	hypothetical protein	NA	NA	NA	NA
WP_095908243.1\|4037505_4038762_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_095908244.1\|4039346_4039844_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_020689513.1\|4040413_4040932_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_095908464.1\|4041399_4042098_+	hypothetical protein	NA	NA	NA	NA
WP_095908246.1\|4043026_4043632_+	hypothetical protein	NA	NA	NA	NA
WP_095908248.1\|4044727_4045339_+	hypothetical protein	NA	NA	NA	NA
WP_095908465.1\|4045732_4046545_-	DUF817 domain-containing protein	NA	NA	NA	NA
WP_095908249.1\|4046638_4048501_-	bifunctional glutathionylspermidine amidase/synthase	A0A219Y9C1	Aeromonas_phage	8.5e-19	23.2
WP_013098701.1\|4048685_4049555_+	glutathione-dependent disulfide-bond oxidoreductase	NA	NA	NA	NA
WP_048971475.1\|4049715_4050048_+	hypothetical protein	NA	NA	NA	NA
WP_147720050.1\|4050318_4052427_-\|transposase	IS4 family transposase	S5FM71	Shigella_phage	9.8e-64	48.4
WP_095907283.1\|4052987_4054142_-\|transposase	IS481 family transposase	NA	NA	NA	NA
4054220:4054236	attR	NA	NA	NA	NA

DBSCAN-SWA_9

4126376 : 4183395

Salmonella_phage(66.67%)

tail,lysis,transposase,protease,tRNA,plate,portal,terminase,head,integrase,capsid

attL 4136941:4136959|attR 4170407:4170425

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_095908273.1\|4126376_4128371_-\|protease	serine protease	Q2A0D0	Sodalis_phage	1.8e-19	24.8
WP_029883055.1\|4128719_4129400_+	response regulator transcription factor	NA	NA	NA	NA
WP_013098775.1\|4129431_4130445_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	8.2e-109	58.6
WP_001144069.1\|4130681_4130897_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_014833324.1\|4131013_4132759_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.7e-77	39.2
WP_013098777.1\|4132924_4134772_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	8.4e-35	33.7
WP_095908274.1\|4134861_4136037_-\|transposase	IS4 family transposase	S5FM71	Shigella_phage	1.0e-102	48.6
WP_020689452.1\|4136163_4136670_-	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
4136941:4136959	attL	NA	NA	NA	NA
WP_015386379.1\|4137007_4137226_-	DNA-binding transcriptional regulator	Q53ZE7	Salmonella_virus	1.6e-25	72.2
WP_015386378.1\|4137295_4138396_-	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	1.5e-180	91.0
WP_015386377.1\|4138392_4138878_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	1.7e-72	88.2
WP_095908275.1\|4138877_4142321_-\|tail	phage tail tape measure protein	A0A1S6L010	Salmonella_phage	0.0e+00	72.2
WP_095908276.1\|4142313_4142433_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	5.7e-14	89.7
WP_007848877.1\|4142447_4142750_-\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	3.7e-41	91.0
WP_007848874.1\|4142804_4143320_-\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	7.6e-87	93.0
WP_007848866.1\|4143329_4144502_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	9.5e-210	92.8
WP_032665797.1\|4144582_4145335_-	site-specific DNA-methyltransferase	Q775B4	Bordetella_phage	1.5e-62	50.6
WP_058651076.1\|4145393_4145981_-	recombinase family protein	A0A0F7LA37	Escherichia_phage	1.4e-84	84.6
WP_095908466.1\|4146462_4146879_+\|tail	tail fiber assembly protein	A0A0M4S6V4	Salmonella_phage	7.4e-16	54.7
WP_095908278.1\|4146859_4147297_-\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	2.5e-38	55.9
WP_095908279.1\|4147298_4148681_-\|tail	phage tail protein	M1TAS6	Escherichia_phage	1.3e-144	72.2
WP_014884893.1\|4148677_4149283_-\|tail	phage tail protein I	E5G6N9	Salmonella_phage	8.1e-112	94.0
WP_058670697.1\|4149275_4150184_-\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	2.0e-143	90.4
WP_095908280.1\|4150170_4150530_-	GPW/gp25 family protein	A0A1S6KZZ4	Salmonella_phage	4.2e-52	88.1
WP_032665787.1\|4150526_4151105_-\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	2.0e-104	96.4
WP_095908281.1\|4151173_4151620_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	3.4e-59	79.7
WP_039025357.1\|4151612_4152044_-\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	1.3e-68	88.1
WP_045334056.1\|4152139_4152568_-\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	4.0e-57	85.0
WP_095908282.1\|4152564_4153080_-	lysozyme	E5G6N1	Salmonella_phage	6.9e-72	75.3
WP_014884902.1\|4153060_4153276_-	hypothetical protein	E5G6N0	Salmonella_phage	2.0e-20	66.2
WP_000868184.1\|4153279_4153483_-\|tail	tail protein X	E5G6M9	Salmonella_phage	3.8e-34	100.0
WP_014884903.1\|4153482_4153950_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	1.3e-48	58.7
WP_006777754.1\|4154048_4154702_-\|terminase	Small terminase subunit	E5G6M7	Salmonella_phage	5.2e-56	56.1
WP_045261922.1\|4154705_4155854_-\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	3.2e-133	67.6
WP_059446323.1\|4155869_4156697_-\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	7.7e-73	56.0
WP_017382378.1\|4156846_4158610_+\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	3.2e-312	87.7
WP_095908283.1\|4158609_4159662_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	5.4e-156	79.6
WP_004205801.1\|4159706_4160045_-	STAS-like domain-containing protein	NA	NA	NA	NA
WP_063849401.1\|4160044_4161019_-	hypothetical protein	A4PE73	Ralstonia_virus	5.5e-54	42.5
WP_095908284.1\|4161365_4162265_+	hypothetical protein	NA	NA	NA	NA
WP_095908285.1\|4162402_4162636_-	DinI family protein	A0A1S6L014	Salmonella_phage	6.4e-33	90.9
WP_032706399.1\|4162647_4162836_-	hypothetical protein	A0A1S6L006	Salmonella_phage	4.6e-26	98.4
WP_095908286.1\|4162997_4165406_-	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	96.1
WP_095908287.1\|4166256_4166484_-	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	3.3e-34	90.7
WP_095908288.1\|4166483_4166717_-	DUF2732 domain-containing protein	E5G6L6	Salmonella_phage	2.7e-23	79.2
WP_000963477.1\|4166784_4167126_-	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	2.6e-51	86.7
WP_015386352.1\|4167089_4167290_-	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	8.7e-31	90.9
WP_015386351.1\|4167297_4167807_-	phage regulatory CII family protein	A0A1S6L008	Salmonella_phage	1.0e-83	93.5
WP_023206292.1\|4167841_4168078_-	hypothetical protein	NA	NA	NA	NA
WP_095908289.1\|4168165_4168816_+	phage repressor protein CI	F1BUN8	Cronobacter_phage	1.5e-26	33.5
WP_023206294.1\|4168841_4169387_+	hypothetical protein	NA	NA	NA	NA
WP_023206295.1\|4169392_4170406_+\|integrase	tyrosine-type recombinase/integrase	F1BUS9	Erwinia_phage	4.8e-117	60.2
WP_095908290.1\|4170667_4171513_-	DUF4942 domain-containing protein	NA	NA	NA	NA
4170407:4170425	attR	NA	NA	NA	NA
WP_095908291.1\|4172090_4172468_-	toxin CbtA	NA	NA	NA	NA
WP_095908292.1\|4172519_4172879_-	type IV toxin-antitoxin system YeeU family antitoxin	NA	NA	NA	NA
WP_095908293.1\|4172974_4173196_-	DUF987 domain-containing protein	NA	NA	NA	NA
WP_095908294.1\|4173207_4173687_-	DNA repair protein RadC	NA	NA	NA	NA
WP_095908295.1\|4173698_4174160_-	antirestriction protein	A0A2D0W9W4	Bordetella_phage	9.1e-15	35.5
WP_095908296.1\|4174170_4174419_-	hypothetical protein	NA	NA	NA	NA
WP_095908297.1\|4174418_4175237_-	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	2.5e-39	36.1
WP_095908298.1\|4175362_4175836_-	hypothetical protein	NA	NA	NA	NA
WP_095908299.1\|4175998_4178842_-	autotransporter adhesin Ag43	NA	NA	NA	NA
WP_095908300.1\|4179329_4180205_-	GTPase family protein	NA	NA	NA	NA
WP_087451024.1\|4182274_4183395_-\|transposase	IS3-like element ISSen4 family transposase	S5WIU1	Leptospira_phage	1.7e-51	42.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP017473

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP017475

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection