CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP017481	Pectobacterium polaris strain NIBIO1006 chromosome, complete genome	1 crisprs	RT,csa3,WYL,DEDDh,cas3,DinG	0	0	4	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP017481_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017481_1

2516884-2516982

Orphan

Consensus_repeat	Method
CTGGAGCAATTTTTAACGCCGCTTGCGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017481_1

>merge|NZ_CP017481|1|2516884-2516982|CRISPRCasFinder
CTGGAGCAATTTTTAACGCCGCTTGCGGTGGCCCGAAGGGCGGCGGACAGGGATAGTCCGCCGTAAAAAACTGGAGCAATTTTTAACGCCGCTTGCGGT

>NZ_CP017481|1|1|2516884-2516982|CRISPRCasFinder
CTGGAGCAATTTTTAACGCCGCTTGCGGT	GGCCCGAAGGGCGGCGGACAGGGATAGTCCGCCGTAAAAAA
CTGGAGCAATTTTTAACGCCGCTTGCGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017481.1\|WP_010286515.1\|2520607_2521321_+\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	unknown	unknown	gnl\|CDD\|181800
NZ_CP017481.1\|WP_095993997.1\|2524130_2524502_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017481.1\|WP_040031267.1\|2509383_2510421_-\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
NZ_CP017481.1\|WP_039482886.1\|2518527_2519406_+\|4-hydroxy-tetrahydrodipicolinate-synthase	unknown	unknown	gnl\|CDD\|235107
NZ_CP017481.1\|WP_095993999.1\|2525035_2525653_+\|esterase	unknown	unknown	gnl\|CDD\|183144
NZ_CP017481.1\|WP_039482881.1\|2521540_2521993_+\|DUF441-domain-containing-protein	unknown	unknown	gnl\|CDD\|225334
NZ_CP017481.1\|WP_095993993.1\|2513720_2514089_-\|arsenate-reductase-(glutaredoxin)	unknown	unknown	gnl\|CDD\|239332
NZ_CP017481.1\|WP_095995357.1\|2512975_2513683_+\|DnaA-inactivator-Hda	unknown	unknown	gnl\|CDD\|181224
NZ_CP017481.1\|WP_095698827.1\|2519422_2520460_+\|outer-membrane-protein-assembly-factor-BamC	unknown	unknown	gnl\|CDD\|236955
NZ_CP017481.1\|WP_095993998.1\|2524642_2524870_+\|DUF1272-domain-containing-protein	unknown	unknown	gnl\|CDD\|226334
NZ_CP017481.1\|WP_095993994.1\|2514103_2515567_-\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|227122
NZ_CP017481.1\|WP_010307474.1\|2510742_2511369_+\|uracil-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234653
NZ_CP017481.1\|WP_039482888.1\|2517950_2518313_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380355
NZ_CP017481.1\|WP_040031268.1\|2511585_2512875_+\|uracil-permease	unknown	unknown	gnl\|CDD\|236744
NZ_CP017481.1\|WP_095993995.1\|2517061_2517874_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP017481.1\|WP_095993991.1\|2507356_2508463_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238559
NZ_CP017481.1\|WP_095993992.1\|2508745_2509384_-\|phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|235544
NZ_CP017481.1\|WP_095995358.1\|2516279_2516828_-\|glycine-cleavage-system-transcriptional-repressor	unknown	unknown	gnl\|CDD\|236935
NZ_CP017481.1\|WP_039356343.1\|2515736_2516204_-\|thioredoxin-dependent-thiol-peroxidase	unknown	unknown	gnl\|CDD\|181857
NZ_CP017481.1\|WP_095993996.1\|2522010_2524068_+\|tRNA(Met)-cytidine-acetyltransferase	unknown	unknown	gnl\|CDD\|224361

Protein	Function_ID	Function_description	E-value
NZ_CP017481.1\|WP_010286515.1\|2520607_2521321_+\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	gnl\|CDD\|181800	PRK09362, PRK09362, phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed.	8.72575e-142
NZ_CP017481.1\|WP_040031267.1\|2509383_2510421_-\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NZ_CP017481.1\|WP_039482886.1\|2518527_2519406_+\|4-hydroxy-tetrahydrodipicolinate-synthase	gnl\|CDD\|235107	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional.	5.46339e-180
NZ_CP017481.1\|WP_095993999.1\|2525035_2525653_+\|esterase	gnl\|CDD\|183144	PRK11460, PRK11460, putative hydrolase; Provisional.	4.49797e-119
NZ_CP017481.1\|WP_039482881.1\|2521540_2521993_+\|DUF441-domain-containing-protein	gnl\|CDD\|225334	COG2707, COG2707, Predicted membrane protein [Function unknown].	3.41597e-51
NZ_CP017481.1\|WP_095993993.1\|2513720_2514089_-\|arsenate-reductase-(glutaredoxin)	gnl\|CDD\|239332	cd03034, ArsC_ArsC, Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.	1.8368e-55
NZ_CP017481.1\|WP_095995357.1\|2512975_2513683_+\|DnaA-inactivator-Hda	gnl\|CDD\|181224	PRK08084, PRK08084, DnaA inactivator Hda.	2.46286e-172
NZ_CP017481.1\|WP_095698827.1\|2519422_2520460_+\|outer-membrane-protein-assembly-factor-BamC	gnl\|CDD\|236955	PRK11679, PRK11679, outer membrane protein assembly factor BamC.	0
NZ_CP017481.1\|WP_095993998.1\|2524642_2524870_+\|DUF1272-domain-containing-protein	gnl\|CDD\|226334	COG3813, COG3813, Uncharacterized protein conserved in bacteria [Function unknown].	2.92018e-26
NZ_CP017481.1\|WP_095993994.1\|2514103_2515567_-\|M48-family-metallopeptidase	gnl\|CDD\|227122	COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only].	0
NZ_CP017481.1\|WP_010307474.1\|2510742_2511369_+\|uracil-phosphoribosyltransferase	gnl\|CDD\|234653	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed.	7.43582e-133
NZ_CP017481.1\|WP_039482888.1\|2517950_2518313_+\|cupin-domain-containing-protein	gnl\|CDD\|380355	cd02226, cupin_YdbB-like, Bacillus subtilis YdbB and related proteins, cupin domain. This family includes bacterial proteins homologous to YdbB, a Bacillus subtilis protein of unknown function. It also includes protein Nmb1881 From Neisseria meningitidis, also of unknown function. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	9.47665e-54
NZ_CP017481.1\|WP_040031268.1\|2511585_2512875_+\|uracil-permease	gnl\|CDD\|236744	PRK10720, PRK10720, uracil transporter; Provisional.	0
NZ_CP017481.1\|WP_095993995.1\|2517061_2517874_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	3.09025e-23
NZ_CP017481.1\|WP_095993991.1\|2507356_2508463_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238559	cd01139, TroA_f, Periplasmic binding protein TroA_f. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.	4.11402e-148
NZ_CP017481.1\|WP_095993992.1\|2508745_2509384_-\|phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|235544	PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed.	3.41565e-130
NZ_CP017481.1\|WP_095995358.1\|2516279_2516828_-\|glycine-cleavage-system-transcriptional-repressor	gnl\|CDD\|236935	PRK11589, gcvR, glycine cleavage system transcriptional repressor; Provisional.	8.62345e-132
NZ_CP017481.1\|WP_039356343.1\|2515736_2516204_-\|thioredoxin-dependent-thiol-peroxidase	gnl\|CDD\|181857	PRK09437, bcp, thioredoxin-dependent thiol peroxidase; Reviewed.	3.77884e-122
NZ_CP017481.1\|WP_095993996.1\|2522010_2524068_+\|tRNA(Met)-cytidine-acetyltransferase	gnl\|CDD\|224361	COG1444, COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only].	0

>NZ_CP017481.1|WP_095995358.1|2516279_2516828_-|glycine-cleavage-system-transcriptional-repressor
MPSSQEHYLVITALGVDRPGIVNAITRHVSSCGCNIEDSRLAMLGKEFTFIMLLSGSWNAITLIESTLPLKGAEMDLLIVMKRTESQASQPTPSTVWVKVDVADSPHIIERFTDLFDSHQLNIAELVSKTQPAEGDKPPQLYIQIAAHSSTTLDSSIIEPAFHQLCTELHAQGSISVVNYAQ
>NZ_CP017481.1|WP_039356343.1|2515736_2516204_-|thioredoxin-dependent-thiol-peroxidase
MNTLKAGDIAPKFSLPDQDGEQVNLTDFQGQKVLVYFYPKAMTPGCTVQACGLRDNMDDLKKHGVEVLGISTDKSEKLSRFVEKEVLNFTLLSDEDHQVSEGFGVWGEKTFMGKTYDGIHRISFLIDENGKVEKVFDDFKTSNHHDIVLDYLKSA
>NZ_CP017481.1|WP_095993994.1|2514103_2515567_-|M48-family-metallopeptidase
MSIRLRKTVMSVLFGALLAGNLLPAQADTQDRLPDIGTTAGGTLSINQELAMGDFYVRQLRAGAPLINDPLLSNYINQLGNRLVKQADSVRTPFHFYLIRNDDINAFAFFGGNVVLHSALFRYADSESELASVLAHEISHVTQRHLARSMESQQRSAPLTWVGALGSILLAMANPQLGMAALSGTLAGAQQGMITFTQSNEQEADRIGIQVLQRAGFDPQAMPNFLQKLADQSRYASRPPEMLLTHPLPESRLSDARNRANQMRSTPVQSSQDFLFAKIRTFGMYGSPERPLSNDLLEQWEKGNVREQLAAKYGRAIQLYQAKKYDEARNVLQPLLSSAPENPWFLDMMTDIDIGQSRATQAIARLQNVPGMQANPVLQLNLANAYVEGKQPAAASKILYRYTYAHPDDSNGWDLLAQAAAAQGQRAEELAARAESLALSGQLDQSIRLLSNASSLVKLGSLEQARYDARIDQLRQLQQRFRQYQKS
>NZ_CP017481.1|WP_095993993.1|2513720_2514089_-|arsenate-reductase-(glutaredoxin)
MTPQTSVTIYHNPRCSKSRETLALLQEHNITPDVVLYLDTPPDAATLAQLIKQLGFTSARELMRTKEEIYQQLGLSDAAITEAQLIQAMIDNPKLIERPIVVAQGQARIGRPPEQVLEILSL
>NZ_CP017481.1|WP_095995357.1|2512975_2513683_+|DnaA-inactivator-Hda
MILNTPAQLSLPLYLPDDETFASFYPGENASLLAAVNNALYQEHGSYIYFWSREGGGRSHLLHAACAELSRQERAVGYVPLDKRAYFVPDVLEGMEQLALVCIDNIESIAGDEEWEMAVFNLYNRIQETGRALLLITGDRPPRQLNLRLPDLASRLDWGQIYKLQPLSDDEKGEALQLRARLRGFELPEDVSRFLLKRLDREMRTLFMTLDQLDHASITAQRKLTIPFVKEILGL
>NZ_CP017481.1|WP_040031268.1|2511585_2512875_+|uracil-permease
MTRRAIGVSERPPLLQTIPLSFQHLFAMFGATVLVPILFKINPATVLLFNGVGTLLYLFICKGKIPAYLGSSFAFISPVLLLLPLGYEVALGGFIMCGVLFCLVALIVKKAGTGWLNVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPADGASVDSTAVTISLATLAITILGSVLFRGFLAIIPILIGVLAGYALSFVLGVVDLTPIREAHWFAMPTFYTPRFEWFAILAILPAALVVIAEHVGHLVVTANIVKKDLMREPGLHRSMFANGISTVLSGFFGSTPNTTYGENIGVLAITKVYSTWVIGGAAILAILLSCVGKLAAAIQAVPVPVMGGVSLLLYGVIGASGIRVLIESKVDYNKAQNLILTSVILIIGVSGAKVHLGSTELKGMALATVVGIGMSLVFKVISLFRKEEEILDAPEENDARS
>NZ_CP017481.1|WP_010307474.1|2510742_2511369_+|uracil-phosphoribosyltransferase
MKIVEVKHPLVKHKLGLMRENDISTKRFRELASEVGSLLTYEATADLATEKVTIDGWCGPVEVDQIKGKKITVVPILRAGLGMMDGVLENVPSARISVVGIYRDEETLEPVPYFQKLVSNIEERMALVVDPMLATGGSMIATIDLLKKAGCHSIKVLVLVAAPEGIAALEKAHPDVELYTASIDKGLNEQGYIMPGLGDAGDKIFGTK
>NZ_CP017481.1|WP_040031267.1|2509383_2510421_-|phosphoribosylformylglycinamidine-cyclo-ligase
MTDKTSLSYKDAGVDIDAGNALVDRIKGVVKQTRRPEVMGGLGGFGALCALPQKYREPILVSGTDGVGTKLRLAMDLKRHDTIGIDLVAMCVNDLVVQGAEPLFFLDYYATGKLDVDTAASVITGIAEGCKQSGCALVGGETAEMPGMYHGEDYDVAGFCVGVVEKSEIIDGSKVQNGDVLVALASSGPHSNGYSLVRKVLEVSKTDPEQFELEGKSLADHLLAPTKIYVKSILSLIEKVDVHAISHLTGGGFWENIPRVLPEGMQATIDESSWQWPAVFNWLQQAGNVSRHEMYRTFNCGVGMIIALPADQADEAVALLNSSGENAWKIGVITQTDAGDAVVIN
>NZ_CP017481.1|WP_095993992.1|2508745_2509384_-|phosphoribosylglycinamide-formyltransferase
MKNIVVLISGHGSNLQALIDACKNGRLKGKIVAVFSNNAEAYGLERAQNANIPTCVLNPEDFADRAAFDAALANEIEQYEPALVILAGYMRILSPEFVAQFAGKMLNIHPSLLPKYPGLHTHRKALENGDREHGTSVHFVTDELDGGPLILQAKVPVFSDDTEESLSERVKTHEHTIYPMVINWFLNGRLVMRDNEAWLDSIRIPPQGYAAE
>NZ_CP017481.1|WP_095993991.1|2507356_2508463_-|ABC-transporter-substrate-binding-protein
MRTVLLLCLLFLSPLLQAKTVTDILGRQVAIPDNPQRIILGESRMLYTLALLQPDNPAKYIVGWPGDMARYDAQSWSRYTEKFPQLSQIPQLGNGSLQAMNAEMLLPLKPDLVILPRLAKNAANEDLLQQTLTRAGIPFIYVDLRIDLLNNTLPSIRLLGEVLNQPQRATAFSNFYQQHMDVIRQRIAQYHGKKPTVMLHLHLGRRDTCCTTAVGGSLGDLLTFAGGENIASGTINSVYGELSPERVLAANPDVYVATGMAGPDGKRFSSLMLGPLVNAAQAKESFDTLIRQEPILSHLRAVQTGHAWSMWHNFYLSPYHVVMVEMFAKALYPDRFADIDPQQTLQQLYQQFLPIEFSGIYWSQISHE
>NZ_CP017481.1|WP_095993995.1|2517061_2517874_+|AraC-family-transcriptional-regulator
MRRHQINTDWVKQAQHPASFERIEAFFRGHGYDPHRHDTYAIGRTLSGVQRFHYRGNLCNSVPGGTLVLHPDEIHDGEAGSVDGFQYRMIYVEPALIQKILGGKPLPFINGGISNDPRLFAATEPLLRAMEEAFDELEKDDVLYDLAQALSAVGGQRHPRRLFDYHAAERAREYIHDAFDKTITLDELAQVSGRDRWSLTRDFRALFGTTPYRYVTMRRLEHCRRLMLAGDSLVDIAARTGFADQSHMTRHFVKAFGLSPGHWQRMFAAS
>NZ_CP017481.1|WP_039482888.1|2517950_2518313_+|cupin-domain-containing-protein
MYKSINFAQKLALFDDRWQPKVIAEMNDYQFKIVKIQGDFIWHSHPETDETFIVLEGQLRIDFRDGDVRINAGEMYVVPSGVEHKPYAEHEVKLLLIEPKGVLNTGHEGGGRTAENDIWI
>NZ_CP017481.1|WP_039482886.1|2518527_2519406_+|4-hydroxy-tetrahydrodipicolinate-synthase
MFTGSIVALVTPMDAKGAVDRASLKKLIDYHVASGTSAIVSVGTTGESATLSHDEHGDVVLLTLELSDGRIPVIAGTGANATAEGVSLTKRFHGTGVVGCLTVTPYYNKPTQEGLYQHFKAIAEHTDLPQILYNVPSRTGCDMLPETVARLSEVKNIVAIKEATGNLSRVSQIQELVSEDFILLSGDDASGLDFMQLGGNGVISVTANIAAREMAELCRLAAQGNFVEARRLNQRLMPLHQKLFVEPNPIPVKWACKELGLMATDTLRLPMTPLTDSGRTVMGQALKQAGLL
>NZ_CP017481.1|WP_095698827.1|2519422_2520460_+|outer-membrane-protein-assembly-factor-BamC
MSYSLQKSMVAKVVGISLVMLLAACSSDQRYKRQVSGDESYLKASALHALNTPAGMILPVQNGDYDIPPVTLNGAVGKELDIRPPVQPLALLNGSRTQISGDTATLLLENSAQNSQLWSQVIRVLQDKAFTIASRQDASQTLTTDWISWPREDEDVPYQGRYQISVQQQGYQVALVVKLLGLQLNGQPVTAGDQAQRYTGLMLNALSNGLDSQATARENALANRTIGSLDVQSGADDTGLPLLIVRGPYTVVWDRLPVALDKIGMKVNDRSRPQGSVSVTYRAPSGGTWDDLGAKNPELPNGDYKLQVGDLDNRSSLQFIDSKGHTLTQSQNDALVAVFQAAFSK
>NZ_CP017481.1|WP_010286515.1|2520607_2521321_+|phosphoribosylaminoimidazolesuccinocarboxamide-synthase
MQKLAELYRGKAKTVYTTEDPDLLVLEFRNDTSAGDGARIEQFDRKGMVNNKFNHFIMSKLEEAGIPTQMVSLLSDNEVLVKKLDMVPVECVVRNRAAGSLVKRLGIEEGIELNPPLFDLFLKNDEMHDPMVNESYCKTFGWVNEENLARMKELSYKANDVLSKLFGDAGLILVDFKLEFGLFKGEVVLGDEFSPDGSRLWDKETLNKMDKDRFRQSLGGLIEAYEEVAHRIGVKLD
>NZ_CP017481.1|WP_039482881.1|2521540_2521993_+|DUF441-domain-containing-protein
MTYLDPTLLILLVLAGLGIISHNMTVTLAILVLLAIRITPLNSYFPWVEKYGLSIGIVILTIGVMAPIASGKITASEVMHSFLHWKSLLAILIGVAVSWLGGRGVSLMSNQPSVVAGLLVGTVMGVALFRGVPVGPLIAAGLLSLLIGKT
>NZ_CP017481.1|WP_095993996.1|2522010_2524068_+|tRNA(Met)-cytidine-acetyltransferase
MMLRDFLHSQRQQQRYGVRRLLVLSGEADWCEEQALALSRQLSGDWLWIGESVPDSVTSLPASRVRTLLGREFLHAVFDARKGVDVEALAMLSGTLQVGSWLIMLVPSWQSWPTLPDEDSLRWSEQEQPIAAPHFIQHFQRQLLADEDVVLWQQDQEVVIRPLGERTDWQPANGEPTAQQQHILHELNAAESGVFVITAPRGRGKSALAGMLTQRSRGTCWITAPSRAAAEILQQHARTDAQFWAPDALLAHCRLHGAPNVDWLLIDEAAAVPSSVLSALLPYFPRILMTTTVQGYEGTGRGFLLKFCATLPQWRAFTLNEPLRWAANDPLERVLDQALLFNEPEVFHSPHQPDRPIPSSALESRIERADDWLIHPERLAWCYALLCSAHYRTSPLDLRRLMDAPGMHIASAQVAGEMCGVLWLVEEGGLSASLAHEVWAGRRRPRGNLVAQSLAAHAGLWHAPTLRARRVSRIAVASSCRRQGIGRALIAEQMREAQRRALDYLSVSFGYQPDLWAFWQSCGFQLMRIGSHIEASSGCYSAMAVLPLSEAGYRLAEQGSQQLARNWRWLQRLIPLNLALPQTGNTELDEDDWRELAGFAFAHRPMEASFAALCRLLIHTTLSLPALRLLAEKPDESEQIAITLGLTGRKALLKRWREETTSALVDLDAQRCERWKDAVMVNTTG
>NZ_CP017481.1|WP_095993997.1|2524130_2524502_-|hypothetical-protein
MTDDREEMYRLAGALLKSIQHGDPATLLDFGVSPAIYEEILEELDSAGENLADLAIPPYDVAFTPDKTGRIPLCSYATDAEPQRKRVECQLWSGERKTDLTLIADYSDKQGKTPLIFRLLETQ
>NZ_CP017481.1|WP_095993998.1|2524642_2524870_+|DUF1272-domain-containing-protein
MLELRPNCEHCDCDLLPDAETYICSYECTFCPDCADTVFHHACPNCGGELVKRPVRPARCLANDPASTIRIIKPH
>NZ_CP017481.1|WP_095993999.1|2525035_2525653_+|esterase
MNQDYVVVQQPSKANRLILLFHGVGDTAAGMAQIGRYFAAALPQAMVISIAGPFSSGYGDGRQWFSVQGVTEENRFSRIEANLPRFIETVRHWQEQSGMSAEQTVLVGFSQGSIMSLEALKSESSLAGHIIAFSGRFAVLPEKAFADVAVHLIHGEADGVIVVGHAHAAAQRFQELGTSFTLDVAPAVGHGIDERMLKQALSYLK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2962644 : 3039696

Burkholderia_phage(26.92%)

transposase,plate,tail,protease,holin,tRNA,integrase

attL 3025117:3025138|attR 3034483:3034504

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_095699115.1\|2962644_2963577_+\|tRNA	tRNA dihydrouridine(16) synthase DusC	NA	NA	NA	NA
WP_095699116.1\|2963763_2965176_+	S-methylmethionine permease	NA	NA	NA	NA
WP_095994248.1\|2965168_2966116_+	homocysteine S-methyltransferase	NA	NA	NA	NA
WP_095994249.1\|2966132_2966681_+	hypothetical protein	NA	NA	NA	NA
WP_095699119.1\|2967079_2967622_+	class IV adenylate cyclase	NA	NA	NA	NA
WP_039480132.1\|2967682_2968039_+	FMN-binding protein	NA	NA	NA	NA
WP_095994250.1\|2968101_2968611_+	hypothetical protein	NA	NA	NA	NA
WP_095994251.1\|2968760_2969708_+	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA
WP_095994252.1\|2969785_2970472_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_095994253.1\|2970624_2971395_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_095994254.1\|2971429_2973079_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_095994255.1\|2973075_2974086_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	4.4e-30	35.3
WP_095994256.1\|2974164_2975184_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_095994257.1\|2975600_2976947_+	aspartate aminotransferase family protein	NA	NA	NA	NA
WP_095994258.1\|2977293_2979600_+	beta-glucosidase BglX	NA	NA	NA	NA
WP_095994259.1\|2979700_2980240_+	isopentenyl-diphosphate Delta-isomerase	NA	NA	NA	NA
WP_095994261.1\|2980622_2981270_-	LysE family transporter	NA	NA	NA	NA
WP_095994262.1\|2981322_2982168_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_095994263.1\|2982317_2984417_+	ATP-dependent DNA helicase DinG	A0A127AW80	Bacillus_phage	3.3e-43	25.7
WP_095699128.1\|2984928_2986359_+	M10 family metallopeptidase	NA	NA	NA	NA
WP_095994264.1\|2986464_2986776_+\|protease	protease inhibitor Inh/omp19 family protein	NA	NA	NA	NA
WP_095994265.1\|2986793_2988521_+	type I secretion system permease/ATPase	F2Y1V6	Organic_Lake_phycodnavirus	8.7e-18	31.6
WP_095994266.1\|2988548_2989877_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
WP_095994267.1\|2989879_2991247_+	TolC family outer membrane protein	NA	NA	NA	NA
WP_039273066.1\|2991486_2991816_+\|holin	putative holin	A4JWP3	Burkholderia_virus	1.5e-24	57.4
WP_039315950.1\|2991817_2992429_+	transglycosylase SLT domain-containing protein	J9SHG5	Pseudomonas_phage	8.8e-58	58.6
WP_095994268.1\|2992418_2993093_+	hypothetical protein	NA	NA	NA	NA
WP_010281034.1\|2993082_2993412_+	hypothetical protein	Q5ZQY8	Pseudomonas_phage	1.5e-19	45.8
WP_095994269.1\|2993404_2993716_+	hypothetical protein	Q6QIC3	Burkholderia_phage	1.3e-20	46.5
WP_095994270.1\|2993978_2994446_+	Gp37 family protein	NA	NA	NA	NA
WP_039273081.1\|2994442_2994640_+	hypothetical protein	Q6QIB1	Burkholderia_phage	1.9e-09	58.5
WP_095994271.1\|2994629_2996057_+\|tail	phage tail sheath subtilisin-like domain-containing protein	A4JWK5	Burkholderia_virus	2.6e-201	72.7
WP_039273085.1\|2996056_2996581_+\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	3.6e-68	66.7
WP_095994272.1\|2996637_2996934_+	ferredoxin	V5UTY8	Synechococcus_phage	4.8e-17	55.0
WP_095994273.1\|2997090_2997411_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_108723452.1\|2997379_2997499_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_095994274.1\|2997716_3000197_+\|tail	phage tail tape measure protein	NA	NA	NA	NA
WP_095699140.1\|3000196_3001126_+\|tail	phage tail protein	Q6QIA4	Burkholderia_phage	1.8e-46	43.7
WP_095994275.1\|3001115_3001328_+\|tail	tail protein X	A4JWL2	Burkholderia_virus	1.5e-17	58.6
WP_095994276.1\|3001315_3002476_+	phage late control D family protein	Q6QIA2	Burkholderia_phage	8.0e-84	47.8
WP_095994277.1\|3002472_3003054_+\|plate	phage baseplate assembly protein V	Q6QIA1	Burkholderia_phage	2.7e-24	45.6
WP_039273098.1\|3003112_3003460_+	GPW/gp25 family protein	Q6QIA0	Burkholderia_phage	1.2e-32	61.1
WP_095994278.1\|3003450_3004554_+\|plate	baseplate J/gp47 family protein	A4JWL6	Burkholderia_virus	1.5e-103	53.8
WP_095994279.1\|3004546_3005128_+\|tail	phage tail protein I	A4JWL7	Burkholderia_virus	8.7e-63	62.8
WP_095994280.1\|3007195_3007816_+\|tail	tail fiber assembly protein	E5G6P1	Salmonella_phage	1.2e-22	34.4
WP_157910780.1\|3007870_3008014_-	hypothetical protein	NA	NA	NA	NA
WP_125460905.1\|3009030_3009621_-	hypothetical protein	NA	NA	NA	NA
WP_095994283.1\|3010364_3011333_+	DNA-binding protein YbiB	NA	NA	NA	NA
WP_095994284.1\|3011419_3013288_+	peptidase M3	NA	NA	NA	NA
WP_095994285.1\|3013338_3014061_-	glutamine ABC transporter ATP-binding protein GlnQ	G9BWD6	Planktothrix_phage	4.3e-35	41.8
WP_005972676.1\|3014057_3014717_-	glutamine ABC transporter permease GlnP	NA	NA	NA	NA
WP_095699150.1\|3014743_3015490_-	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA
WP_010294859.1\|3015880_3016384_-	DNA starvation/stationary phase protection protein Dps	A0A222YYG6	Streptomyces_phage	1.8e-08	29.9
WP_095994286.1\|3016721_3017273_+	adenylate kinase	A0A097BYE2	Leuconostoc_phage	3.7e-15	37.1
WP_095994287.1\|3017260_3018148_-	threonine/homoserine exporter RhtA	NA	NA	NA	NA
WP_039480180.1\|3018524_3019040_+	outer membrane protein OmpX	H6WZM8	Escherichia_phage	1.2e-15	33.0
WP_095994288.1\|3019385_3020555_+	MFS transporter	NA	NA	NA	NA
WP_095994289.1\|3020599_3022000_-	EmmdR/YeeO family multidrug/toxin efflux MATE transporter	NA	NA	NA	NA
WP_095994290.1\|3022405_3022942_+	rhodanese family protein	NA	NA	NA	NA
WP_014914981.1\|3023013_3023343_+	DHCW motif cupin fold protein	NA	NA	NA	NA
WP_095994291.1\|3023594_3024317_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_095994292.1\|3024465_3024837_-	VOC family protein	NA	NA	NA	NA
3025117:3025138	attL	NA	NA	NA	NA
WP_095994293.1\|3025405_3026260_+	hypothetical protein	NA	NA	NA	NA
WP_095994294.1\|3026383_3026548_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_095994295.1\|3026863_3027445_+	AAA family ATPase	NA	NA	NA	NA
WP_095994296.1\|3027445_3028258_+	aldo/keto reductase	NA	NA	NA	NA
WP_014699424.1\|3028797_3029283_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_095994297.1\|3029619_3031767_+	hypothetical protein	NA	NA	NA	NA
WP_095994299.1\|3032135_3032777_-	hypothetical protein	NA	NA	NA	NA
WP_095994300.1\|3033039_3034269_-\|integrase	tyrosine-type recombinase/integrase	A0A1V0E8G8	Vibrio_phage	1.3e-105	48.5
WP_095994301.1\|3034640_3036386_-	DUF3413 domain-containing protein	NA	NA	NA	NA
3034483:3034504	attR	NA	NA	NA	NA
WP_005967239.1\|3036400_3036631_-	YejL family protein	NA	NA	NA	NA
WP_095699169.1\|3036851_3037862_+	nucleoid-associated protein YejK	A0A1V0E8C0	Vibrio_phage	2.2e-85	47.7
WP_095994302.1\|3037944_3039093_-	DUF1624 domain-containing protein	NA	NA	NA	NA
WP_107332875.1\|3039237_3039696_-\|transposase	IS200/IS605 family transposase	I4AZI8	Saccharomonospora_phage	2.0e-14	32.3

DBSCAN-SWA_2

3346053 : 3355718

Tupanvirus(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039480511.1\|3346053_3347982_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	1.4e-128	36.5
WP_095699351.1\|3347984_3348527_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	2.8e-15	33.5
WP_010275699.1\|3348622_3348820_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_005968887.1\|3348863_3349220_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_106120997.1\|3349309_3349354_+	pheST operon leader peptide PheM	NA	NA	NA	NA
WP_014915263.1\|3349536_3350520_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	4.5e-35	39.3
WP_095994461.1\|3350534_3352922_+\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	5.1e-08	28.9
WP_009112984.1\|3352926_3353223_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	7.1e-13	40.0
WP_095994462.1\|3353284_3353710_-	nitrous oxide-stimulated promoter family protein	NA	NA	NA	NA
WP_095994463.1\|3353999_3355718_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.5e-57	31.0

DBSCAN-SWA_3

4440427 : 4449863

Morganella_phage(42.86%)

integrase

attL 4433161:4433175|attR 4455259:4455273

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4433161:4433175	attL	NA	NA	NA	NA
WP_095995414.1\|4440427_4441642_+\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	8.8e-134	58.5
WP_095995091.1\|4441785_4442505_+	hypothetical protein	NA	NA	NA	NA
WP_094432810.1\|4442726_4442924_+	AlpA family transcriptional regulator	A0A1V0E8E5	Vibrio_phage	1.7e-07	47.2
WP_095995092.1\|4442920_4443367_+	hypothetical protein	A0A1W6JPH9	Morganella_phage	5.0e-26	55.8
WP_095995093.1\|4443381_4443984_+	antirepressor protein	A0A1W6JPH8	Morganella_phage	2.1e-48	50.8
WP_005971433.1\|4444071_4444245_-	hypothetical protein	NA	NA	NA	NA
WP_095995094.1\|4444437_4444629_+	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
WP_095995095.1\|4444618_4444810_+	hypothetical protein	NA	NA	NA	NA
WP_095995096.1\|4444799_4445036_+	hypothetical protein	NA	NA	NA	NA
WP_052201314.1\|4445028_4445238_+	hypothetical protein	A0A286SGR4	Klebsiella_phage	3.4e-09	50.9
WP_094432821.1\|4445234_4445462_+	hypothetical protein	NA	NA	NA	NA
WP_095995097.1\|4445461_4448155_+	TOPRIM and DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	2.6e-295	57.0
WP_095995098.1\|4448324_4448762_+	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_095995099.1\|4448773_4449226_+	ProQ/FinO family protein	NA	NA	NA	NA
WP_125460912.1\|4449293_4449863_-	hypothetical protein	M9NZJ1	Enterobacteria_phage	1.2e-19	32.4
4455259:4455273	attR	NA	NA	NA	NA

DBSCAN-SWA_4

4741282 : 4746726

Mycobacterium_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014916295.1\|4741282_4741522_+	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	9.1e-19	59.5
WP_010280810.1\|4741532_4741940_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A220BYR7	Staphylococcus_phage	1.1e-06	26.5
WP_095995260.1\|4741936_4744099_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	3.5e-202	51.3
WP_014916297.1\|4744123_4745086_+	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	3.0e-137	73.6
WP_039486522.1\|4745467_4746205_-	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	1.4e-38	37.1
WP_039486519.1\|4746261_4746726_+	ribonuclease HI	J9Q745	Salmonella_phage	1.8e-47	56.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage