CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP023394	Lactococcus raffinolactis strain WiKim0068 plasmid pWiKim0068-2, complete sequence	0 crisprs	NA	2
NZ_CP023393	Lactococcus raffinolactis strain WiKim0068 plasmid pWiKim0068-1, complete sequence	0 crisprs	NA	0
NZ_CP023392	Lactococcus raffinolactis strain WiKim0068 chromosome, complete genome	3 crisprs	DEDDh,csa3,cas3,DinG,WYL	7

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP023392_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023392_1

641886-641995

Orphan

Consensus_repeat	Method
TTGTGAGCTGAAATCTAACGAAGTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP023392_1

>merge|NZ_CP023392|1|641886-641995|CRISPRCasFinder
TTGTGAGCTGAAATCTAACGAAGTCGTTACGACCTACAGTTTTTTGGCGTAAGGGCGAGGAAGATGACGCGTAGCAATCTTGAGATTGTGAGCTGAAATCTAACGAAGTC

>NZ_CP023392|1|1|641886-641995|CRISPRCasFinder
TTGTGAGCTGAAATCTAACGAAGTC	GTTACGACCTACAGTTTTTTGGCGTAAGGGCGAGGAAGATGACGCGTAGCAATCTTGAGA
TTGTGAGCTGAAATCTAACGAAGTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023392.1\|WP_061775081.1\|634723_635122_-\|DUF948-domain-containing-protein	unknown	unknown	gnl\|CDD\|227109
NZ_CP023392.1\|WP_061775094.1\|649201_649714_-\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|377585
NZ_CP023392.1\|WP_157738484.1\|637500_638733_-\|DUF4097-family-beta-strand-repeat-protein	unknown	unknown	gnl\|CDD\|226123
NZ_CP023392.1\|WP_061775082.1\|635239_636037_-\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|183527
NZ_CP023392.1\|WP_096039548.1\|648280_649150_-\|DegV-family-protein	unknown	unknown	gnl\|CDD\|273257
NZ_CP023392.1\|WP_096039539.1\|634045_634639_-\|YtxH-domain-containing-protein	unknown	unknown	gnl\|CDD\|378938
NZ_CP023392.1\|WP_096039547.1\|646747_648118_-\|cell-division-protein-FtsA	unknown	unknown	gnl\|CDD\|223918
NZ_CP023392.1\|WP_096039538.1\|632715_633123_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023392.1\|WP_096039544.1\|643035_643833_-\|cell-division-protein	unknown	unknown	gnl\|CDD\|225185
NZ_CP023392.1\|WP_061775091.1\|645341_646607_-\|cell-division-protein-FtsZ	unknown	unknown	gnl\|CDD\|236468
NZ_CP023392.1\|WP_096039537.1\|632224_632671_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023392.1\|WP_082785426.1\|633759_633927_+\|DUF3042-family-protein	unknown	unknown	gnl\|CDD\|371431
NZ_CP023392.1\|WP_096039549.1\|649730_650501_-\|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	unknown	unknown	gnl\|CDD\|129290
NZ_CP023392.1\|WP_096039543.1\|642217_642931_-\|DivIVA-domain-containing-protein	unknown	unknown	gnl\|CDD\|377456
NZ_CP023392.1\|WP_096039546.1\|644675_645338_-\|YggS-family-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|143483
NZ_CP023392.1\|WP_096039545.1\|643832_644078_-\|YggT-family-protein	unknown	unknown	gnl\|CDD\|376765
NZ_CP023392.1\|WP_096039542.1\|638903_641702_-\|isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235588
NZ_CP023392.1\|WP_096039540.1\|636038_636962_-\|HPr-kinase/phosphorylase	unknown	unknown	gnl\|CDD\|235459
NZ_CP023392.1\|WP_082785427.1\|637184_637508_-\|PspC-domain-containing-protein	unknown	unknown	gnl\|CDD\|224894
NZ_CP023392.1\|WP_061775089.1\|644077_644626_-\|cell-division-protein-SepF	unknown	unknown	gnl\|CDD\|224712

Protein	Function_ID	Function_description	E-value
NZ_CP023392.1\|WP_061775081.1\|634723_635122_-\|DUF948-domain-containing-protein	gnl\|CDD\|227109	COG4768, COG4768, Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only].	7.9669e-28
NZ_CP023392.1\|WP_061775094.1\|649201_649714_-\|NYN-domain-containing-protein	gnl\|CDD\|377585	pfam05991, NYN_YacP, YacP-like NYN domain. This family consists of bacterial proteins related to YacP. This family is uncharacterized functionally, but it has been suggested that these proteins are nucleases due to them containing a NYN domain. NYN (for N4BP1, YacP-like Nuclease) domains were discovered by Anantharaman and Aravind. Based on gene neighborhoods it was suggested that the bacterial YacP proteins interact with the Ribonuclease III and TrmH methylase in a processome complex that catalyzes the maturation of rRNA and tRNA.	3.18625e-65
NZ_CP023392.1\|WP_157738484.1\|637500_638733_-\|DUF4097-family-beta-strand-repeat-protein	gnl\|CDD\|226123	COG3595, COG3595, Uncharacterized conserved protein [Function unknown].	1.81072e-09
NZ_CP023392.1\|WP_061775082.1\|635239_636037_-\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|183527	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed.	5.95782e-97
NZ_CP023392.1\|WP_096039544.1\|643035_643833_-\|cell-division-protein	gnl\|CDD\|225185	COG2302, COG2302, Uncharacterized conserved protein, contains S4-like domain [Function unknown].	3.94813e-82
NZ_CP023392.1\|WP_096039547.1\|646747_648118_-\|cell-division-protein-FtsA	gnl\|CDD\|223918	COG0849, ftsA, Cell division ATPase FtsA [Cell division and chromosome partitioning].	2.01504e-140
NZ_CP023392.1\|WP_096039548.1\|648280_649150_-\|DegV-family-protein	gnl\|CDD\|273257	TIGR00762, DegV, EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity. [Unknown function, General].	7.88243e-94
NZ_CP023392.1\|WP_061775091.1\|645341_646607_-\|cell-division-protein-FtsZ	gnl\|CDD\|236468	PRK09330, PRK09330, cell division protein FtsZ; Validated.	0
NZ_CP023392.1\|WP_082785426.1\|633759_633927_+\|DUF3042-family-protein	gnl\|CDD\|371431	pfam11240, DUF3042, Protein of unknown function (DUF3042). This family of proteins with unknown function appears to be restricted to Firmicutes.	4.73203e-17
NZ_CP023392.1\|WP_096039549.1\|649730_650501_-\|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	gnl\|CDD\|129290	TIGR00186, Uncharacterized_tRNA/rRNA_methyltransferase_MG252, rRNA methylase, putative, group 3. this is part of the trmH (spoU) family of rRNA methylases [Protein synthesis, tRNA and rRNA base modification].	1.98804e-82
NZ_CP023392.1\|WP_096039543.1\|642217_642931_-\|DivIVA-domain-containing-protein	gnl\|CDD\|377456	pfam05103, DivIVA, DivIVA protein. The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate mini-cells. Inactivation of divIVA produces a mini-cell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype. These proteins appear to contain coiled-coils.	3.60699e-30
NZ_CP023392.1\|WP_096039546.1\|644675_645338_-\|YggS-family-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|143483	cd00635, PLPDE_III_YBL036c_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.	1.27091e-91
NZ_CP023392.1\|WP_096039545.1\|643832_644078_-\|YggT-family-protein	gnl\|CDD\|376765	pfam02325, YGGT, YGGT family. This family consists of a repeat found in conserved hypothetical integral membrane proteins. The function of this region and the proteins which possess it is unknown.	7.05414e-06
NZ_CP023392.1\|WP_082785427.1\|637184_637508_-\|PspC-domain-containing-protein	gnl\|CDD\|224894	COG1983, PspC, Putative stress-responsive transcriptional regulator [Transcription / Signal transduction mechanisms].	1.32773e-21
NZ_CP023392.1\|WP_096039542.1\|638903_641702_-\|isoleucine--tRNA-ligase	gnl\|CDD\|235588	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.	0
NZ_CP023392.1\|WP_096039540.1\|636038_636962_-\|HPr-kinase/phosphorylase	gnl\|CDD\|235459	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional.	1.32151e-156
NZ_CP023392.1\|WP_096039539.1\|634045_634639_-\|YtxH-domain-containing-protein	gnl\|CDD\|378938	pfam12732, YtxH, YtxH-like protein. This family of proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved. Proteins is this family are functionally uncharacterized.	3.44532e-09
NZ_CP023392.1\|WP_061775089.1\|644077_644626_-\|cell-division-protein-SepF	gnl\|CDD\|224712	COG1799, COG1799, Uncharacterized protein conserved in bacteria [Function unknown].	5.99213e-32

>NZ_CP023392.1|WP_096039542.1|638903_641702_-|isoleucine--tRNA-ligase
MKIKETLNLGQTAFPMRAGLPNKEPKMQEAWDEADLYAYRLKENAGKPSFVLHDGPPYANGDIHVGHAMNKISKDIIIRYKNMAGFRAPYVPGWDTHGLPIEQVLTKKGIKRKELDRAEYLRMCRDYALTQVDLQRKGFKSLGVLGDWENPYVTLQPEFEAAQIRVFGKMSENGYIYKGAKPIYWSPSSESSLAEAEIEYQDVRSASIYVAFKATDTKGLLPEDAEFVIWTTTPWTIPSNLGIFAHPDYDYVLVAVNDRKFVIASELLNTVAEKLEWADYQVLQTIKGSDLDGMVAKHPFYDRDTLVMNAEYVTLESGTGLVHVAPGHGEDDYFFSRKYKLGVLSPIDDRGYYTDEAPGLEGLFYDEGNKKVTEWLEENNALLKLEFFTHSYPHDWRTKKPVIFRATPQWFASIDKFRDNILTEVEKVDWVVPWGKTRLYNMIRDRGDWVISRQRAWGVPLPIFYAEDGTAIITPETTEHIAQLFAENGSIIWWERDAKDLLPEGFTHPGSPNGEFTKETDIMDVWFDSGSSWNGVLNQREELTYPADLYLEGSDQYRGWFNSSITTSVAVNGIAPYKAVLSQGFVQDAKGRKFSKSLGNGIAPKDVTKQYGADILRLWVASVDNTSDVRVSMDLIGQTSEAYRKIRNTLRFLIANTSDFDKTKDAVAYEDLKGSDKYLLVRLNQVIQSVREAYDRYNFMEVYRTIFNFLTNDMSAFYLDFAKDIVYIETANSTDRRRMQTVMYEILVKLTKLLVPIVPHTSEEIWTYLEQEEEAYAYLTEMPSADVIPDAAEILDFWSAFLEFRTGVHKALEMARDEKVIGKSLEASVMVYPDEAVKVLLASVAETEDVATLLIVSELIVSDQAAPEDAVKVGDTAITVNHAVGGVCQRCRRIDESVGTNANAHLVELCDHCASIVTLEFPEAAAEGFESK
>NZ_CP023392.1|WP_157738484.1|637500_638733_-|DUF4097-family-beta-strand-repeat-protein
MNNQKERIMDLMRKGIITESEAIELLEKAGLDNDTNAEEKTTQQTDNDGYQTDSSEAVKQFVNQAGSLVKSLFQSAKKSVDNNVDFSNGFPSLKYVTKSDFKAFDGEIKDITVSATSGDVTVLTKDIEKTIVETTYKVYGGVTEEAMDEFIRDNVVIELDQGELVINVKSKRIVVEMTITLAASQIEDAKFDVVNGIVNIEGLTADDLNVKKVNGDLIVKDGLFKSVVVKAVNGEVRVASDFETADISNVNGEVVVTATAINAENLKVKNVNGDVKISVPENIGVVGYVKTTFGKYKTRIALDNPLEITKNGAALIRTATNSLTLDIATNTGSIWLKDGEPARADSPTAQTATAESAETTDQPEVDEAPVTVEQVEKSETTVVPEADNSKIDTIPGQKSDDESEVNQDHE
>NZ_CP023392.1|WP_082785427.1|637184_637508_-|PspC-domain-containing-protein
MSKQLTKSRTNKKISGVIGGLGEYFGWSQDVITIIRIVYAVLALTSFGSLLVIYIVAAIVMPQPTRNDWRNKQDFSEFSQWPGEKPRQNKKMKDVTPFDDDDDWSQF
>NZ_CP023392.1|WP_096039540.1|636038_636962_-|HPr-kinase/phosphorylase
MVITVAELLEKIKFDVVYTSETALKKEITTSDVTRPGLEMTGYLEYYTPERIQLFGMKEWSYVQNVIGDNRYDLLKNVVTDATPAIIVARGLPIPDEMISVAKKRDTVLLQSTEPTSRLNGAITAFLDEKLSTRTTVHGVLMDIFGVGVLIQGSSGIGKSETGLELIKRGHRLVADDRVDVYQKDEFTVVGEPAEILRHLIELRGVGIIDVMSLFGAGAVMDSSQVDLSVYLEKFEKGNTYDRLGNGETTIDFSGVAVPQVKIPVTTGRNVSVIIEAAVMNFRAKNMGFDATKMFEERLSNLIAKNS
>NZ_CP023392.1|WP_061775082.1|635239_636037_-|prolipoprotein-diacylglyceryl-transferase
MRQLFLAINPIALKLGPLEIRWYALCIVTGVVVAVWLAMKEAPRKKIKPDDILDFILIAFPIAIIGARLYYILFDLGYYRQNPGEIFAIWHGGIAIYGGLIAGAVTLFIFSYYKMIAPLDFLDIAVPGVLVAQAMGRWGNFFNQEAFGKAVKSLNYLPNFIKNQMYIDNSYRTPTFLYESSWNLIGFILVMSLRHHLKWLKSGDIVAFYLVWYGLGRFVIEGMRTDSLMLGPIRVSQALSLILVLVGVVLVLVNHKVNKYFLNKQ
>NZ_CP023392.1|WP_061775081.1|634723_635122_-|DUF948-domain-containing-protein
MGDIALIIIAAAVAVLVIFLVVLIVKVMKTVDEVNRTVAIVTQDTDILLKQADTLMAKTNTLLDDVNSKIVTIDPLFTAVADLSESVSKVNRSGNAFATRFKGKAANVGKATAIVTLGRGAGKIFNRKKNKA
>NZ_CP023392.1|WP_096039539.1|634045_634639_-|YtxH-domain-containing-protein
MAKKTGFLVGAILGALAGAAAALATAPKEGKKLRQDVKDFYQDYKEDPKAKFDDLKDTAVNFYDEKSGQLVEFSTEKYNDIREKFDNGDISAEKAKDFLVAKKDDIKAKIDSGELSKEKVLDFLALTKEKIADKVNDLKGTVTEQAEEVEDDFELELEQEDLVKKADEISAKADQLVSEASSQVVETADKISDEITD
>NZ_CP023392.1|WP_082785426.1|633759_633927_+|DUF3042-family-protein
MKKFSKGIITGVVGTLAATAAGIFAVKKTIIDPELKKEEFINENRRKAARKRVSH
>NZ_CP023392.1|WP_096039538.1|632715_633123_-|hypothetical-protein
MKKSNYVLLVYFLSLFLTYTKYPSAESHFKFTSYNAFQTVVKSPFNDKEWLTLILLVLSIISYIILRFFIKKYRQYGNIILLTSFIWFSLLQLSPSIIAGGKVYLQFYGIGFWLSTSLGIIFLIMDLLETKNLKS
>NZ_CP023392.1|WP_096039537.1|632224_632671_-|hypothetical-protein
MIECSNCGRFTSPNEDYCEYCHEKITQEAIEKYEERKKDIVEIEQKNTEFSDTKSKNIVDFFSIFNIILIVINVIGAISFFFITGELFGGYIEFPLSMRLTILVLSLVYTLFLYMAVEMGVKHFSNVAEIKEMKFQSLIHDENEQSSK
>NZ_CP023392.1|WP_096039543.1|642217_642931_-|DivIVA-domain-containing-protein
MTLNSLDVQNKTFPTKMRGYNKADVDDFLDLIIRDYDTFAEKMKDQERELKSLRERVEYFEGMKESLNKSIVVAQSAADNLKEQAISEANGVTSEAGQKAQYILESAKKEAGGILNSASDDARRLVKETDELKRKMRIYHQRMMLMVEAQLEGIKSHEWEEILKPTSTYIGDGEEKLKEIIESHEGNTVQISHTVNQLSEILDAVDQETTVESEEPTEPQEPVQTTDSEKETTDSEA
>NZ_CP023392.1|WP_096039544.1|643035_643833_-|cell-division-protein
MTQVIYQHFRPSERAFIDKASDWLTSVTDSYSLVITDFLNPRQVFILTTLIQGHPAQDIQIFTSSAIAETEYVKVILAPAYYQLTPADFELACLQIDFASKFVTLKHSQILGTFLGETGLERSKIGDIVVHDTFAQVFVDAKLVSVIMDSVHKIARSGVKIKVIDVGEFMPTIEQTITKTVTMSSLRLDKAVASVFNISRNLAQNLIQSSKAKVNYTEVVRNDFELVDGDLVSIRGFGRLKIVQMLCLTKKDKVRVEVQIISTKK
>NZ_CP023392.1|WP_096039545.1|643832_644078_-|YggT-family-protein
MIIYFLYRLITIYEWLLIIYALLSWAPDLRNSQVGRIIGQLSRPFLSIFDRLPLQFAGLDFTIVVAIIALNCIQRLLLIIF
>NZ_CP023392.1|WP_061775089.1|644077_644626_-|cell-division-protein-SepF
MALKDYIEKAKDYFNLGDEEDSAPAVRPQVVQSQASTQPQAQVRPQVVTNTSPKPEIKSERKQSRQVDIAANTARPTSPQRPVSAGIVPTIAIKEPAAYDNIMESARVIRNGESVLVNFKNMGDQQARRSIDFLTGVVFTLDGDIQNVGGQIFLLTPNGMTVDAEKELSILAGRNFEGLDTY
>NZ_CP023392.1|WP_096039546.1|644675_645338_-|YggS-family-pyridoxal-phosphate-dependent-enzyme
MTISENVADVLTNVANTETQTGHKTTVIGVTKYVDADQARALVEAGITHIAENRTELFLDKQEKLSDLSITWHLIGTLQRRKVKDVINRVDYFHALDSIKLAHEIDKRANHVIKCFLQVNVSGEASKHGFSPDELAVVLPEISNLSKVEIVGLMTMAPIDASEAELGDIFDKAKSLQMAIASQALPHIPCTELSMGMSQDYQQAILHGATFVRIGSKFFK
>NZ_CP023392.1|WP_061775091.1|645341_646607_-|cell-division-protein-FtsZ
MEFSFDEALTQGAIIKVIGVGGAGGNAINRMVEEGVSGVEFIAANTDVQALRASKADTVIQLGPKLTRGLGAGSKPEVGQKAAEESAETIQQALEGADMVFITAGMGGGTGTGAAPVIAQISRELGALTVGVVTRPFGFEGSKRGYFASEGIELLKASVDTLLIISNNNLLEIVDKKTPLKEALQEADNVLRQGVQGVTDLITNPGMINLDFADVKTVMANKGDALMGIGTASGEDRVIEATRKAIYSPLLETTIEGAENVLLNVTGGMDMSLTEAQDASELVIQAAGNDVNILLGTSIDESLKDEIRVTVVATGVSEEELQQATTRQTKAAAPVAEQPRRRVLGSSNLDLSNNNFAPRQKTAAPESSAPESAFGNWDIRKENTVRQTPSESTNTTGVSSFGGATTSSNDEDLDIPPFLKR
>NZ_CP023392.1|WP_096039547.1|646747_648118_-|cell-division-protein-FtsA
MAKSGLYTGLDIGTSTIKVLVAEYVSGEMNIIGVGNAKSDGLKNGTIVDIEKVAQAIRKAVNAAEERAGIQITGLNVAVPANRLEVDACQGMVTINSESKEVVESDISQVVASALMRGMMPEREIIAVEPKEFTVDGFSGISDPRGMFGVHLEMKGLVYTGPKTLVHNIRRAVERAGLKVDNIVIAPLALAHHVLNEGEREFGTVVIDLGAGQTTVIAVRDQELQFAHIIPEGGDYITKDISTVLNTSLDQANSLKLNYGEASTERASKEEKFPVNVVGHTEPVEITEFYLSQVIEARLTQIFSRVRQDLERSRGLELPGGIVLLGGAAAMPGVTELATKIIGANVRLYVPNEMGLRNPTFAQVISVVDYVGSRSDIEILVTEAAAGNAVFSEPIVETYHEPAVAAFTDNVYAQTTDDMTYVAPTPQVQPSVPAQDAEPKEGLVDKVRNIFGSMFD
>NZ_CP023392.1|WP_096039548.1|648280_649150_-|DegV-family-protein
MTYQIITDSTSDLSDAYVAAHDVAMLGLTVTLEDTTYQTVGPERLTSDVLLAKMATGAKPVTSQINVGQFSELFKSVVKAGNDVLYLGFSSGLSGTYQSAEMAKQLVLDELPSAHITTIDTLAAASGEGYLVKEAVKLRDDGATLEEVVTALQDLIPRLRSWVMADDLYHLARGGRISKTAATVGTLVNIKPIIDVDPAGQLRQVGKIRGKKKALKTLVTNTLTDFDPAYPHIMIGYSGDPDVAEEVKADLLASDLITEVTLTPLGPTIATHTGTGTIAIFSIGKTQRL
>NZ_CP023392.1|WP_061775094.1|649201_649714_-|NYN-domain-containing-protein
MKKQLLIVDGYNMIGAWQETHQLFQNNDLEQARDLLLKKLSDYAGFEGLEIICVFDAQFVPGVTSKFHVHNVLVIFTKEDETADSYIEKLAGKCNNVLTTVYVATSDLAEQWVIFSQGAMRIPARELEERVNLRKQDLTRHATSMTTQKPRTSWADAQLDELKKLMFEIE
>NZ_CP023392.1|WP_096039549.1|649730_650501_-|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB
MKKNQENFNESEHINDTIYGVHAVVDALTENLGNKLYIQDDLRGKNVDKIKALASEKKVGISFVSKEKLKEMADGGVHQGFVLKTSAYAYKELSDLLALTQDAENPLLIVIDGLTDPHNLGSILRTADATGVSGVIIPKHRSVGVTPVVVKTSTGAVNHIPIARVTNLSQTLDKLKAAGFWVFGTDMNGTPHAKWQTQGKVALIIGAEGAGITSNIKKQVDEMITIPMKGHVQSLNAGVAAGILMYEWARNVGQSN

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Crispr_ID: NZ_CP023392_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023392_2

1291566-1291714

Orphan

Consensus_repeat	Method
GAAGATCGTGAATGACCCTGCTTGGCAGGAGCGCAAGCGGAAGTCAAGTTTCAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP023392_2

>merge|NZ_CP023392|2|1291566-1291714|CRISPRCasFinder
GAAGATCGTGAATGACCCTGCTTGGCAGGAGCGCAAGCGGAAGTCAAGTTTCAAGCTTTCAGGAAGAGAAACCGCAGAAAGCCTTTGAGCGGCCGAAGATCGCGAATGACCCTGCTTGGCAGGAGCGCAAGCGGAAGTCAAGTTTCAAG

>NZ_CP023392|2|2|1291566-1291714|CRISPRCasFinder
GAAGATCGTGAATGACCCTGCTTGGCAGGAGCGCAAGCGGAAGTCAAGTTTCAAG	CTTTCAGGAAGAGAAACCGCAGAAAGCCTTTGAGCGGCC
GAAGATCGCGAATGACCCTGCTTGGCAGGAGCGCAAGCGGAAGTCAAGTTTCAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023392.1\|WP_096039943.1\|1282620_1283883_+\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NZ_CP023392.1\|WP_082785331.1\|1292765_1292870_-\|putative-holin-like-toxin	unknown	unknown	gnl\|CDD\|319017
NZ_CP023392.1\|WP_096039947.1\|1288846_1290589_+\|aspartate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234775
NZ_CP023392.1\|WP_061773695.1\|1283872_1285156_+\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NZ_CP023392.1\|WP_096039942.1\|1281983_1282382_-\|S4-domain-containing-protein-YaaA	unknown	unknown	gnl\|CDD\|225303
NZ_CP023392.1\|WP_096039952.1\|1297659_1298493_+\|DNA-formamidopyrimidine-glycosylase	unknown	unknown	gnl\|CDD\|234899
NZ_CP023392.1\|WP_096039945.1\|1287063_1288350_+\|histidine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234586
NZ_CP023392.1\|WP_061773697.1\|1286106_1286664_+\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|273139
NZ_CP023392.1\|WP_096039950.1\|1294100_1294961_-\|Hsp33-family-molecular-chaperone-HslO	unknown	unknown	gnl\|CDD\|234643
NZ_CP023392.1\|WP_061773700.1\|1288580_1288823_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023392.1\|WP_061773711.1\|1300864_1301062_-\|CsbD-family-protein	unknown	unknown	gnl\|CDD\|283241
NZ_CP023392.1\|WP_167372345.1\|1290555_1291473_+\|YitT-family-protein	unknown	unknown	gnl\|CDD\|224203
NZ_CP023392.1\|WP_004261195.1\|1293109_1294099_-\|tRNA-dihydrouridine-synthase-DusB	unknown	unknown	gnl\|CDD\|129820
NZ_CP023392.1\|WP_061773709.1\|1298613_1299786_+\|recombinase-RecA	unknown	unknown	gnl\|CDD\|236476
NZ_CP023392.1\|WP_061773710.1\|1299965_1300364_+\|transcriptional-regulator-Spx	unknown	unknown	gnl\|CDD\|179316
NZ_CP023392.1\|WP_096039944.1\|1285229_1286099_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|224343
NZ_CP023392.1\|WP_096039951.1\|1296125_1297559_-\|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L--lysine-ligase	unknown	unknown	gnl\|CDD\|237588
NZ_CP023392.1\|WP_096039949.1\|1291753_1292620_+\|YitT-family-protein	unknown	unknown	gnl\|CDD\|224203
NZ_CP023392.1\|WP_096039946.1\|1288346_1288577_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023392.1\|WP_061773706.1\|1295149_1295590_+\|DUF1810-domain-containing-protein	unknown	unknown	gnl\|CDD\|378062

Protein	Function_ID	Function_description	E-value
NZ_CP023392.1\|WP_096039943.1\|1282620_1283883_+\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	6.70256e-60
NZ_CP023392.1\|WP_096039947.1\|1288846_1290589_+\|aspartate--tRNA-ligase	gnl\|CDD\|234775	PRK00476, aspS, aspartyl-tRNA synthetase; Validated.	0
NZ_CP023392.1\|WP_082785331.1\|1292765_1292870_-\|putative-holin-like-toxin	gnl\|CDD\|319017	pfam16935, Hol_Tox, Putative Holin-like Toxin (Hol-Tox). Hol_Tox is a family of small proteins (34-48aas) with a single TM region. Members can exhibit antibacterial activity against Gram-positive bacteria but not against Gram-negative bacteria.	1.41518e-05
NZ_CP023392.1\|WP_061773695.1\|1283872_1285156_+\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	1.26948e-79
NZ_CP023392.1\|WP_096039942.1\|1281983_1282382_-\|S4-domain-containing-protein-YaaA	gnl\|CDD\|225303	COG2501, COG2501, S4-like RNA binding protein [Replication, recombination, and repair].	3.37399e-27
NZ_CP023392.1\|WP_096039952.1\|1297659_1298493_+\|DNA-formamidopyrimidine-glycosylase	gnl\|CDD\|234899	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase.	1.02355e-137
NZ_CP023392.1\|WP_061773697.1\|1286106_1286664_+\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	gnl\|CDD\|273139	TIGR00560, pgsA, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. Alternate names: phosphatidylglycerophosphate synthase; glycerophosphate phosphatidyltransferase; PGP synthase. A number of related enzymes are quite similar in both sequence and catalytic activity, including Saccharamyces cerevisiae YDL142c, now known to be a cardiolipin synthase. There may be problems with incorrect transitive annotation of near homologs as authentic CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. [Fatty acid and phospholipid metabolism, Biosynthesis].	1.19064e-41
NZ_CP023392.1\|WP_096039950.1\|1294100_1294961_-\|Hsp33-family-molecular-chaperone-HslO	gnl\|CDD\|234643	PRK00114, hslO, Hsp33 family molecular chaperone HslO.	5.02327e-136
NZ_CP023392.1\|WP_096039945.1\|1287063_1288350_+\|histidine--tRNA-ligase	gnl\|CDD\|234586	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed.	0
NZ_CP023392.1\|WP_061773711.1\|1300864_1301062_-\|CsbD-family-protein	gnl\|CDD\|283241	pfam05532, CsbD, CsbD-like. CsbD is a bacterial general stress response protein. It's expression is mediated by sigma-B, an alternative sigma factor. The role of CsbD in stress response is unclear.	5.00879e-05
NZ_CP023392.1\|WP_167372345.1\|1290555_1291473_+\|YitT-family-protein	gnl\|CDD\|224203	COG1284, COG1284, Uncharacterized conserved protein [Function unknown].	4.33988e-76
NZ_CP023392.1\|WP_004261195.1\|1293109_1294099_-\|tRNA-dihydrouridine-synthase-DusB	gnl\|CDD\|129820	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family. This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. [Unknown function, General].	1.94477e-140
NZ_CP023392.1\|WP_061773709.1\|1298613_1299786_+\|recombinase-RecA	gnl\|CDD\|236476	PRK09354, recA, recombinase A; Provisional.	0
NZ_CP023392.1\|WP_061773710.1\|1299965_1300364_+\|transcriptional-regulator-Spx	gnl\|CDD\|179316	PRK01655, spxA, transcriptional regulator Spx; Reviewed.	1.4127e-67
NZ_CP023392.1\|WP_096039944.1\|1285229_1286099_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|224343	COG1426, COG1426, Predicted transcriptional regulator contains Xre-like HTH domain [Function unknown].	1.04017e-31
NZ_CP023392.1\|WP_096039951.1\|1296125_1297559_-\|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L--lysine-ligase	gnl\|CDD\|237588	PRK14022, PRK14022, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase.	0
NZ_CP023392.1\|WP_096039949.1\|1291753_1292620_+\|YitT-family-protein	gnl\|CDD\|224203	COG1284, COG1284, Uncharacterized conserved protein [Function unknown].	3.11789e-85
NZ_CP023392.1\|WP_061773706.1\|1295149_1295590_+\|DUF1810-domain-containing-protein	gnl\|CDD\|378062	pfam08837, DUF1810, Protein of unknown function (DUF1810). This is a family of uncharacterized proteins. The structure of one of the members in this family has been solved and it adopts a mainly alpha helical structure.	1.57144e-79

>NZ_CP023392.1|WP_167372345.1|1290555_1291473_+|YitT-family-protein
MNRTQFKNRKIIPPMINVIKNISIEKLMYKLSASVVYAILSAVALNFFFQPGHVYSSGITGLAQIFTTLSYKLLGHDIPVSITLYLLNLPLLVLAWLKIGKRFTIYTVITVTLSSIFIHAIPEYTMTTDPIINSIFGGAVMGAGIGYALRSGISSGGTDIVSLYIRKKTGRQVGNISLLFNGVIVIIAGVLFGWQYMFYSLLTIFVSSRVTDAIYTKQRKMQATIITKHPVEITQALHQKLHRGVTVVNSAEGGYTRANMTLLITIITQAEYQEFKCIMKETDPTAFVSIAENVKVLGRFVEDDN
>NZ_CP023392.1|WP_096039947.1|1288846_1290589_+|aspartate--tRNA-ligase
MKRTGYAGAVRSEHIGQTITLKGWVARRRDLGGLIFIDLRDREGIMQLVVNPELASKEVLATAESLRSEFVIEVTGTVLARAQANDKLATGQVELEVTDLTVLNVAKTTPFEIKDDLEASDDTRMRYRYLDLRRPEMLSNFKLRHNVTKAIRHYLDDLDFIDVETPILTKSTPEGARDYLVPSRISEGYFYALPQSPQITKQLLMNAGFDRYYQIVKCFRDEDLRGDRQPEFTQVDLETSFLDEQEIQDLTEGLIAKVMKETKNIDVTLPFPRMTYDDAMNQYGSDKPDTRFEMLLTDVSTIVKKADFKVFSEAPVVKAIVAKNAADAYSRKDIDKLTDYAKQFGAKGLAWVKFVGHEFSGPIAKFLPEIADELADTLALTDKDLVLFVADELDVANATLGALRSRIAKEQDLIDQNQFNFLWVIDWPMFEWSEEGGRYTSAHHPFTLPTTESAHELEGDLAKVRAVAYDIVLNGYELGGGSLRINHKDLQERMLKALGFTAEAANDQFGFLLEAMDYGFPPHGGLALGLDRFVMLLAGKDNIREVIAFPKNNKATDPMTQAPSLVSDQQLTELNLKIGK
>NZ_CP023392.1|WP_061773700.1|1288580_1288823_+|hypothetical-protein
MTEKKVHLFIRTIAVLIIMIGALKLLQGDYNGLNLLLFVALYVVAVKKINAFLKESRLTTVLVFLAVGLQVVMLVLSKVI
>NZ_CP023392.1|WP_096039946.1|1288346_1288577_+|hypothetical-protein
MTDKLKILMGLSALSMAVSLYEIVTQSHQFDRTFLIIYCALIVIFNRDKAITRDKIARVVVIITLVLLLVTSFLAR
>NZ_CP023392.1|WP_096039945.1|1287063_1288350_+|histidine--tRNA-ligase
MKLQRPKGTVDILPGESEKWQFVEATMRRVFATYRFSEIRTPLFEHYEVISRSVGDTTDIVTKEMYDFYDKGDRHVTLRPEGTAPVVRSYVENKKFAPEVQKPFKVYYTGSMFRYERPQAGRLREFHQIGVENFGSKNPATDVETIAMAKAFFDQVGVKNIKLVINSLGDSETRERYREALIGYLEQHLDSLSDDSKRRLHENPLRVLDSKDKQDIAIVKDAPSILDFLTDASQQHLTDVKAMLESLNIVYTVDQNMVRGLDYYNDTIFEFMTEIKGKELTICGGGRYDSLVSYFGGPETPGFGFGIGVDRLLLVLEEQGASLPAAQPLDVYVVVLGASANVAALKLVQSLRDQGYAVERDVLNRKIKQQFKSAEEFGAKVIITLGESEVETGEIVVKNNATRAEVKTTLSEIQSQFDTVFTEVAADA
>NZ_CP023392.1|WP_061773697.1|1286106_1286664_+|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase
MKLTKENLPNNLTIARIFAIPLFILILALGGHSHVWQVIAAILFAVASATDWLDGYLARKWNIVSNFGKFADPLADKMLVMSAFIMLVPLKLAPAWVIAIIICRELAVTGLRLLLVEQGGVVMAAALPGKIKTFTQMLSIIFLLLGWNLLGVIFLYICLAATIYSGYDYFAQNMSVFKDADQSQQ
>NZ_CP023392.1|WP_096039944.1|1285229_1286099_+|helix-turn-helix-domain-containing-protein
MAKKTVGQVLRDQRAKLDMTLNEAEDLTQIQKMYIVALEHDDYDALPGDFYVKAYLKQYAERLDLDYDQLVTAYERNEPIDVHETPDLTENYRFVKPSERLEADEDELGNKKWRYYLPIVLLGTVAALIIISISAAVILNKPKSSGISDHLYSLSTSSKSKSSVSSNEPSTSSSSSESKAPEAPKPEITVTGNGQALSATVKNVASPVKVSLSTVAGTEVWIGMTNSDLPGGQITLTEAAPTTATLTGNQTVLTLGKTTGLTVKIGDTPINLSSIAAPGSPATLTITVE
>NZ_CP023392.1|WP_061773695.1|1283872_1285156_+|insulinase-family-protein
MEIKKYPQVGETLYKEVLDNGLLVYYLPKPEFNKTYGLFTTNFGSLDTRFVPRGGSDMQTFPEGIAHFLEHKLFEKKDGDAMNFFGALGANSNAFTSFTRTSYLFSTMENVEPNVELLLDFVQEPYFTQASVEKEQGIITQEIQMYQDDADFRLFFGLLQNLYPESPLAADIAGTPKSIRRISAEDLYENYRTFYHPGNMTLFLTGPFEVSEMSDLVAKNQAEKRFEPIVPIQRAPFVAAAPIPTNNLAFDVTIPKLALGFRGYDRLPSDPLLRFEYKLAIQLMLTMILGNTSSRYESLYNQGLIDDSFGFDFEVAPQYHFASMTSDTIYPIKLAKILRDTLKSYKIESDFNLDHLMIIKKEMLGDYYKSLNSLEFIANQFSSNLFEGVTFFDFPMILSSLTLEKIEKHADRFIKEMVSTEFIMNPK
>NZ_CP023392.1|WP_096039943.1|1282620_1283883_+|insulinase-family-protein
MKIKNGVNLHIIKETKFKTIQFLVRFRTKMSRQSVAKRVIISNLWETSNAVLTTNQQFQRKLSEMYGASFATGVSKKGDNHFLNIGMSVVNPKYVESDTVTEAVELLHQALFMPLIDEIGFDEDTFAREKKNLLHYLASTREDKSYVASTRLSELFFEDKNLSTPSISTVELMEHETRQSVFEYYKKMLLTDTIDIWILGDLTATQEASIRTYFSEMPFTDREPLTTVFYEQATSNVVREKTEKEAVNQSILQLAYSHSVKYCDADYLTMQVLNGLLGGFSHSKLFTNVREKESLAYYANSRFDTFTGFLKIAAGIDAGQRSKALTIIRAQVRALARGDISENELRQTKDMLRNAYFLSLDSPSNLIEQAYIKQLLPDRQLSQAEWLQRLDAVTKSDVVRIAKTLNLQALYFMEGESLGD
>NZ_CP023392.1|WP_096039942.1|1281983_1282382_-|S4-domain-containing-protein-YaaA
MNTYTIYDEFITLGKLLKEAAIIETGGAAKHFLATNDVLYNGEFENRRGKKLFDGDVLEFPGFGLKINIVAATAEEIAEHQAELDEEACVKAIVKKINAANKKTETRQKSAANNKEQYFKRKTSKPKFPGSK
>NZ_CP023392.1|WP_096039949.1|1291753_1292620_+|YitT-family-protein
MNKEVKFHPLNFLMIALGTAIYAFGFVNFNMVNHLAEGGVSGITLIFHALFKINPAYTQILLNIPLFILGVKIFGKRGMIYTIHGTVCLSIFIWLFQRMSMSIDLAHDTLIAALLAGIFAGIGGGIVFRFGGTTGGGDIIGRYFEQKKGFALGQTLFVFDILVLTLSLSYIDIQHMMYTVIASFVFSQVVAVVQNGGYTVRGMLIISSKYAAISQKITDEIGRGATYLKAEGVYSGQDTKVIYVVLSPIQVQAVKGILAEIDPDAFVSIINVHEVIGSGFTYTEDLNL
>NZ_CP023392.1|WP_082785331.1|1292765_1292870_-|putative-holin-like-toxin
MSAFETIQVLFSFGMFTIALIGLVVKLHNHDEKK
>NZ_CP023392.1|WP_004261195.1|1293109_1294099_-|tRNA-dihydrouridine-synthase-DusB
MTNTYDTPWKIGDIDIKNRIVLAPMAGINNKAFLSLAKEFGAGLVVTEMISDKGIEHRNAKTLSMLDFDGVPNPLSIQIFGGDAETLVEAAKFVQEHTTADIIDINMGCPVPKVTKNESGSRLLLDPNKVYDVVSAVSSAIDLPLTVKMRLGWDNDHLFAVENALAAEKAGAAAVAMHGRTKAQMYEGKADWDWLAKVASKMTIPFIGNGDVKTPEDAKRMLDETGVDAVMIGRAALGNPWMLKRTAHYLATGEEMPEPSVAEKIETAKVHLTRLTELKGDENGSREFRQHAAYYLKGAPRAAKVKVAINQANSAAEISGIFDDYMKLF
>NZ_CP023392.1|WP_096039950.1|1294100_1294961_-|Hsp33-family-molecular-chaperone-HslO
MDKIIKTISNNGHFRAYALEATQTVSEAQKRHQTWSSSTVALGRTLIAAQILGANQKGDDTITVRVQSNGAITSIIAVADTRGNVKGYIKEPNVDYKRGSTGEVLVGDLVGQGWFSVVKDMGLKTPYTGQTPLISGEIGEDLAYYLTTSEQTPSAVGLNVLLNEDESVHVAGGFLVQVMPDAPEAEIAAFETRIQNMPAISKLLRSHDHSKAILDAIYGQDQYKILAESPLAFHCDCSKERFADGIQGLGKIEVEKLITENHGAEVICQFCETVYNFSENDLKELI
>NZ_CP023392.1|WP_061773706.1|1295149_1295590_+|DUF1810-domain-containing-protein
MDEQKFNLERFIKAQKDDYAIALSEIKQGRKSSHWIWYIFPQLDGLGRSTQARYYSISGLDEAVAYYHHPILGARLKEISTALLELETDDSVKVLGKIDALKLKSSMTLFNYAAPHEDIYQKVLDKFYAGEKDTATLKLLCHFSEK
>NZ_CP023392.1|WP_096039951.1|1296125_1297559_-|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L--lysine-ligase
MITLKTVIAILKQDQNFRDIIIDGAYFNAPHQDLTFHQLSYDSREVTDSTLFFAKGLNFKREFLADLAIPFYVSETDYEVEIPAIIVNDVKHAMSLIAMAFYDQPQDALKTLAFTGTKGKTTAAYFAKNILDTHNGGKTAMFSTMETTLDGETFFKSQLTTPESLDLFRMMREAVSNGMTHLVMEVSSQAYKTARVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYCKRQLLANSRYAVVNAEMAHFDFVKSELTGETAFYGAGSEHPISNSEAFSFSALDTNFEIQLIGRFNQENALAASLATIHLGASLADAQAGVAATTVPGRMEVLTQANGAKVFVDYAHNADSLEKLLDVVMPHQTGRVVLVMGTTGNKGESRRQGVGELLEQLPKIEVILTADDPNFEDPAEIAREIASYMTRDVQIIIDRETAIRTAMASTSGADDTVIIAGKGVDAYQIVNGVREPYAGDRKIAEKYL
>NZ_CP023392.1|WP_096039952.1|1297659_1298493_+|DNA-formamidopyrimidine-glycosylase
MPELPEVETVRRGLNKLVRGQKITALRINYTRMIKSDLTTFKTDLINQTIQEVNRRGKYLLFELGEQTLVSHLRMEGKWLSYPSTDIPDNKHFHCFFDLSNGQTLVYQDVRKFGTLELVKTCELSDFFNRKKIGPEPIEADFDLKRFKHQLSGSQKKIKPYLLDQSLVAGLGNIYVDEVLWLAKIHPSEIARYLSPHKVAELRRAVIHILAEGVKYGGSTIRSYKNALGLDGTMQDHLQVYGKTGQPCARCGGAIEKFKLSGRGTHFCPKCQKLKKI
>NZ_CP023392.1|WP_061773709.1|1298613_1299786_+|recombinase-RecA
MAKKAKKNLDDITKKFGDEREKALNDALKVIEKDFGKGALMRLGDKAEQKVQVMSSGSLALDIALGVGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAIDLVVIDSVAALVPRAEIDGEIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGSPETTPGGRALKFYASVRLDVRGNTQIKGTGDDKDTAMGKETKIKVVKNKVAPPFKVAEVEIMFGEGISQTGELVKIATDLDIIKKSGAWFSYNDEKIGQGSEKAKLYLKEHPEVFAEIDHKVREKFGLIAGETTEGQTEEKAATKSSKAKKETAAESELVSLELDTIEIEE
>NZ_CP023392.1|WP_061773710.1|1299965_1300364_+|transcriptional-regulator-Spx
MITIYTAPSCTSCKKAKLWLDQHDISFDERNIMSYPLSTDEVKHILEKCDDGIESLISNRNRFVKSLNVDFEELSLSEAVTIISENPQILRRPIIMDDKRLHIGYNEEEIRAFLPRSVRVLENDGLRLRDAI
>NZ_CP023392.1|WP_061773711.1|1300864_1301062_-|CsbD-family-protein
MSDKGTVDKLKGKAEEVAGTVTGDNKKKAEGLLNQAIGKVKETASDVKEAVEDGVEKIKEKIDHD

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Crispr_ID: NZ_CP023392_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023392_3

1394621-1394754

Orphan

Consensus_repeat	Method
TTCGCGGGTTCCCCGCTCATCATTAAAGGAGTTGCCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP023392_3

>merge|NZ_CP023392|3|1394621-1394754|CRISPRCasFinder
TTCGCGGGTTCCCCGCTCATCATTAAAGGAGTTGCCAGTCCAACGGCTAAGCGATGAATCGCCAAGCCACGTTGTACATAGCAACTTCCCTAAATTTTTCGCGGATTCCCCGCTCATCATTAAAGGAGTTGCCA

>NZ_CP023392|3|3|1394621-1394754|CRISPRCasFinder
TTCGCGGGTTCCCCGCTCATCATTAAAGGAGTTGCCA	GTCCAACGGCTAAGCGATGAATCGCCAAGCCACGTTGTACATAGCAACTTCCCTAAATTT
TTCGCGGATTCCCCGCTCATCATTAAAGGAGTTGCCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023392.1\|WP_061775394.1\|1397643_1398372_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099
NZ_CP023392.1\|WP_167372308.1\|1402818_1407156_+\|VaFE-repeat-containing-surface-anchored-protein	unknown	unknown	gnl\|CDD\|375630
NZ_CP023392.1\|WP_096040002.1\|1399740_1400709_+\|N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase	unknown	unknown	gnl\|CDD\|271335
NZ_CP023392.1\|WP_003139488.1\|1389656_1390082_+\|50S-ribosomal-protein-L11	unknown	unknown	gnl\|CDD\|234661
NZ_CP023392.1\|WP_096039994.1\|1389205_1389415_+\|YozE-family-protein	unknown	unknown	gnl\|CDD\|184229
NZ_CP023392.1\|WP_061774639.1\|1407667_1408495_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|236841
NZ_CP023392.1\|WP_061775396.1\|1395956_1396589_-\|copper-homeostasis-protein-CutC	unknown	unknown	gnl\|CDD\|225684
NZ_CP023392.1\|WP_096039995.1\|1391396_1391723_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023392.1\|WP_096039993.1\|1387827_1388691_+\|S1-RNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|225543
NZ_CP023392.1\|WP_061773794.1\|1390254_1390941_+\|50S-ribosomal-protein-L1	unknown	unknown	gnl\|CDD\|180071
NZ_CP023392.1\|WP_096040000.1\|1396770_1397625_+\|YitT-family-protein	unknown	unknown	gnl\|CDD\|224203
NZ_CP023392.1\|WP_096040004.1\|1407321_1407684_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023392.1\|WP_061775391.1\|1400790_1402281_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368260
NZ_CP023392.1\|WP_096040001.1\|1398381_1399725_+\|Sapep-family-Mn(2+)-dependent-dipeptidase	unknown	unknown	gnl\|CDD\|349884
NZ_CP023392.1\|WP_061773792.1\|1388687_1389209_+\|peptide-methionine-(S)-S-oxide-reductase-MsrA	unknown	unknown	gnl\|CDD\|237597
NZ_CP023392.1\|WP_096039996.1\|1391798_1392029_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023392.1\|WP_096039999.1\|1395430_1395889_+\|RpiB/LacA/LacB-family-sugar-phosphate-isomerase	unknown	unknown	gnl\|CDD\|376799
NZ_CP023392.1\|WP_157738517.1\|1393395_1394421_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226879
NZ_CP023392.1\|WP_061775400.1\|1392659_1393403_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP023392.1\|WP_096039997.1\|1392178_1392580_-\|HIT-family-protein	unknown	unknown	gnl\|CDD\|238608

Protein	Function_ID	Function_description	E-value
NZ_CP023392.1\|WP_061775394.1\|1397643_1398372_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	4.67775e-54
NZ_CP023392.1\|WP_096040002.1\|1399740_1400709_+\|N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase	gnl\|CDD\|271335	cd04513, Glycosylasparaginase, Glycosylasparaginase and similar proteins. Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoproteins. This enzyme is an amidase located inside lysosomes. Mutation of this gene in humans causes a genetic disorder known as aspartylglycosaminuria (AGU). The glycosylasparaginase precursor undergoes autoproteolysis through an N-O or N-S acyl rearrangement of the peptide bond, which leads to the cleavage of a peptide bond between an Asp and a Thr. This proteolysis step generates an exposed N-terminal catalytic threonine and activates the enzyme.	1.3849e-119
NZ_CP023392.1\|WP_003139488.1\|1389656_1390082_+\|50S-ribosomal-protein-L11	gnl\|CDD\|234661	PRK00140, rplK, 50S ribosomal protein L11; Validated.	3.22221e-93
NZ_CP023392.1\|WP_096039994.1\|1389205_1389415_+\|YozE-family-protein	gnl\|CDD\|184229	PRK13672, PRK13672, hypothetical protein; Provisional.	1.29511e-27
NZ_CP023392.1\|WP_061774639.1\|1407667_1408495_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|236841	PRK11088, rrmA, 23S rRNA methyltransferase A; Provisional.	1.76755e-25
NZ_CP023392.1\|WP_061775396.1\|1395956_1396589_-\|copper-homeostasis-protein-CutC	gnl\|CDD\|225684	COG3142, CutC, Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism].	1.66026e-88
NZ_CP023392.1\|WP_167372308.1\|1402818_1407156_+\|VaFE-repeat-containing-surface-anchored-protein	gnl\|CDD\|375630	pfam18202, TQ, T-Q ester bond containing domain. This domain is found in gram positive bacterial surface proteins. It contains a very unusual isopeptide bond between a conserved N-terminal threonine residue on the first beta strand of the Ig-like fold and and a glutamine residue in the final strand of the domain.	7.49696e-33
NZ_CP023392.1\|WP_096039993.1\|1387827_1388691_+\|S1-RNA-binding-domain-containing-protein	gnl\|CDD\|225543	COG2996, COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only].	5.09783e-127
NZ_CP023392.1\|WP_061773794.1\|1390254_1390941_+\|50S-ribosomal-protein-L1	gnl\|CDD\|180071	PRK05424, rplA, 50S ribosomal protein L1; Validated.	3.91357e-141
NZ_CP023392.1\|WP_096040000.1\|1396770_1397625_+\|YitT-family-protein	gnl\|CDD\|224203	COG1284, COG1284, Uncharacterized conserved protein [Function unknown].	1.96256e-56
NZ_CP023392.1\|WP_061775391.1\|1400790_1402281_-\|hypothetical-protein	gnl\|CDD\|368260	pfam05043, Mga, Mga helix-turn-helix domain. M regulator protein trans-acting positive regulator (Mga) is a DNA-binding protein that activates the expression of several important virulence genes in group A streptococcus in response to changing environmental conditions. This domain is found in the centre of the Mga proteins. This family also contains a number of bacterial RofA transcriptional regulators that seem to be largely restricted to streptococci. These proteins have been shown to regulate the expression of important bacterial adhesins. This is presumably a DNA-binding domain.	3.86576e-10
NZ_CP023392.1\|WP_096040001.1\|1398381_1399725_+\|Sapep-family-Mn(2+)-dependent-dipeptidase	gnl\|CDD\|349884	cd03888, M20_PepV, M20 Peptidase Xaa-His dipeptidase (PepV) degrades hydrophobic dipeptides. Peptidase M20 family, Peptidase V (Xaa-His dipeptidase; PepV g.p. (Lactobacillus lactis); X-His dipeptidase; beta-Ala-His dipeptidase; carnosinase) subfamily. The PepV group of proteins is widely distributed in lactic acid bacteria. PepV, along with PepT, functions at the end of the proteolytic processing system. PepV is a monomeric metalloenzyme that preferentially degrades hydrophobic dipeptides. The Streptococcus gordonii PepV gene is homologous to the PepV gene family from Lactobacillus and Lactococcus spp. PepV recognizes and fixes the dipeptide backbone, while the side chains are not specifically probed and can vary, rendering it a nonspecific dipeptidase. It has been shown that Lactococcus lactis subspecies lactis (L9) PepV does not hydrolyze dipeptides containing Pro or D-amino acids at the C-terminus, while PepV from Lactobaccilus has been shown to have L-carnosine hydrolyzing activity. The mammalian PepV also acts on anserine and homocarnosine (but not on homoanserine), and to a lesser extent on some other aminoacyl-L-histidine dipeptides. Also included is the Staphylococcus aureus metallopeptidase, Sapep, a Mn(2+)-dependent dipeptidase where large interdomain movements could potentially regulate the activity of this enzyme.	1.84712e-157
NZ_CP023392.1\|WP_061773792.1\|1388687_1389209_+\|peptide-methionine-(S)-S-oxide-reductase-MsrA	gnl\|CDD\|237597	PRK14054, PRK14054, peptide-methionine (S)-S-oxide reductase.	1.25875e-87
NZ_CP023392.1\|WP_096039999.1\|1395430_1395889_+\|RpiB/LacA/LacB-family-sugar-phosphate-isomerase	gnl\|CDD\|376799	pfam02502, LacAB_rpiB, Ribose/Galactose Isomerase. This family of proteins contains the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB).	1.49329e-53
NZ_CP023392.1\|WP_157738517.1\|1393395_1394421_+\|ABC-transporter-permease	gnl\|CDD\|226879	COG4473, EcsB, Predicted ABC-type exoprotein transport system, permease component [Intracellular trafficking and secretion].	6.69874e-62
NZ_CP023392.1\|WP_061775400.1\|1392659_1393403_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	3.85853e-85
NZ_CP023392.1\|WP_096039997.1\|1392178_1392580_-\|HIT-family-protein	gnl\|CDD\|238608	cd01277, HINT_subgroup, HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides. This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.	1.19486e-49

>NZ_CP023392.1|WP_157738517.1|1393395_1394421_+|ABC-transporter-permease
MAKDIFGLFAKRRAHWRAQNLKYLRYVFNDHFVLVLMFLIGFLAYQYADFLKKLPEHWWPGYVIAVLISLLILLFGRLATFVEKPDQLFLLAKEKAVQTHLINAVKGSLILPAVLIVLMTMLISPLIHISLVVTLVWALVLIAIKYGLLLKKARTFMQDGLIQWQDLINYEKNRQNAILKVFSQFTDVRGLQQQAKRRKYLDVLLPKSKMVYDYLFVRTFLRSGDYFMLMLRLLGLAILSLIFIQSDVFALVIALIFDYLLVFQLLPLRQSQDYQILTQLYPLPTSAKNLAAVKLIRGLTLLICLVELGVSLLVFQDKLLAVIFIPIAVFLGVLYPKYKLK
>NZ_CP023392.1|WP_061775400.1|1392659_1393403_+|ABC-transporter-ATP-binding-protein
MTLKIENLTGGYFGTTVLKDVDFTVNDGELVGLIGLNGAGKSTTIQEIIGLLTPYQGQILLDGLSITQDAESYRKKIGFIPEQPSLYEELTLREHIEVTALAYDVAPDVALARAEKMLKTFRLSDKLDWFPANFSKGMKQKVMIICAFLTEPSLYIIDEPFLGLDPLAINDLIDLMIEMKKTGASILMSTHILSTAEKFCDKFIVLHEGQVIADGDLAALRAKFNLPEASLDEIYVALTDESWQAHG
>NZ_CP023392.1|WP_096039997.1|1392178_1392580_-|HIT-family-protein
MTDCIFCKIISGDIPSYQVYEDDDVLAFLDITQTTKGHTLVVPKKHIRNFLEMSAEDAATLFSKIPHIASHITQRLSASGMNILQNNEMIAGQTVFHAHVHLIPRYSKDDGFKASFTEHDLDLKALQDTLTTL
>NZ_CP023392.1|WP_096039996.1|1391798_1392029_-|hypothetical-protein
MSIIDYFKDLKAIGSDLISETAEAKKHLDTVKFELGYAQFVMDDIKKDIKEYQFQAQPRIDAINTLSTKIQNELSK
>NZ_CP023392.1|WP_096039995.1|1391396_1391723_+|hypothetical-protein
MLKFVGWYMSIAFAILYAFQFLGMMAVGDYAMFVGMLFLTFELIKDQKIKEMVASNVCLLIVILILWFSDDTFHYIQNTGMLLISVGAMVIAELFGGFWGRKFARDHF
>NZ_CP023392.1|WP_061773794.1|1390254_1390941_+|50S-ribosomal-protein-L1
MAKKSKQLRAALEKVEATKVYTVEEAVALAQETNFAKFDATVEVAYNLNIDVKKADQQIRGAMVLPNGTGKTAKVLVFAKGEKAEEAKAAGADYVGEMEYVEKINGGWFDFDVVVATPDMMAVVGRLGRVLGPRNLMPNPKTGTVTMDVTKAVEEVKAGKVTYRAEKAGIVHVAIGKVSFETEKLVENFKAINTVIAAAKPATAKGTYIQSLTVTTTFGPGIKVDPNF
>NZ_CP023392.1|WP_003139488.1|1389656_1390082_+|50S-ribosomal-protein-L11
MAKEVQNIVKLQIPAGKATPAPPVGPALGQAGINIMGFTKEFNARTADQAGMIIPVVISVYEDKSFTFVTKTPPAAVLLKKAAGVEKGSGTPNTVKVATVTKAQVQQIAETKMEDLNASSVESAMRMIEGTARSMGFTVEG
>NZ_CP023392.1|WP_096039994.1|1389205_1389415_+|YozE-family-protein
MSFYNFLMKFRAYKEVDDITKLANLVYEDTTFPKHASDFDEISTYLETHANFAFNLSSFDEIWEQYLAN
>NZ_CP023392.1|WP_061773792.1|1388687_1389209_+|peptide-methionine-(S)-S-oxide-reductase-MsrA
MSQERAIFAGGCFWCMVQPFEELPGILSVLSGYTGGTTQNPTYEDVLTHQTGHTEAVEIIFDNSIVSYGELVELYWTLTDPTDAFGQFQDRGDNYRPVIFYDNAEQQQIATESKAQLQASGRFDFPIVVAIEPSQTFWPAESYHQGFYKTNPVRYAQSSQLRHDFLAKQWGKK
>NZ_CP023392.1|WP_096039993.1|1387827_1388691_+|S1-RNA-binding-domain-containing-protein
MTDLNAIMATRITGKITDENDQNYYIQKDGLIFRLPKTEGDFTIGDDVTGFAYTDKAGKQRLTLTEPSATRDTYGWGTVTDVRKDLGVFLDVNIPEKDVVVSVDILPELKELWPKKGDKLYVKLNVDNKDRIWGELAYPETFVQMAGKAYDNMQNQNLHAIVYRNKNSGSFVYLPENNMLGFIHPNERFSEPRLGQELDVRVIGYREIDKTLNLSLKPRSYEMLDADAQLIMTYLEQQGGHMPFYDKSAPEDIKATFAISKGQFKKALGGLMKQGKIKQDETGTTLL
>NZ_CP023392.1|WP_096039999.1|1395430_1395889_+|RpiB/LacA/LacB-family-sugar-phosphate-isomerase
MKIIMASDHAGVELKAEIKALLETMGHEVDDMGPYDTTAVDLSDFVYPAALKVSQEKVRGIFVDGVGYGSALIANRIYGLDAVVCQDPFCAKLTREHTDSNVLCLGGKIIGSALALEIVRTWMTTDFLPEEKYIRRVEKVKAISEKHLVKNF
>NZ_CP023392.1|WP_061775396.1|1395956_1396589_-|copper-homeostasis-protein-CutC
MLIREFCAENFTDIPRAVAAGAERIELCDNLAVGGTTPSYGVIKETADYLKDTKTTFASMIRPRGGNFVYNSIELRIMESDILKAVEAGTSELVFGALTDDNSLDLEALETLMIASQGLPVTFHMAFDEIPTDLQKSALDELVTLGFDKILMHGDSLDKPVNTSKIAELVSYAAGRIQILAGGGVTSANAETVSAETGSSYVHGTKIVTL
>NZ_CP023392.1|WP_096040000.1|1396770_1397625_+|YitT-family-protein
MASLKDHLKKLVIAASYAFLSAVSVNLFWVPGGIYANGVTGFAQLVVALSGKFHLPMLDLATLVLLINVPLLVIAWFKIDRKFTIFTIIAVFLTSVFMKLIPVMALTNDPVICTVFGGVIHGLGVGITLNSDFSTGGLDIIGILVRKVTTRSIGTIFTAFNLAIEFIAGFVFGWRYALYSAITVFINGRVVDFVNTKERKVQLLIVTKHANEMLRRIQDNHQSGITVINHAQGGYYHESQDILLLVVTSHELNAISSVVKKVDQLAFMSITKGIETNRSTSQWG
>NZ_CP023392.1|WP_061775394.1|1397643_1398372_+|GntR-family-transcriptional-regulator
MENKKGISIYKQVAKEIECKVKNGIYVTAQKLPSEAELAQEFNVSRLTVRKAINLLIEKKVLVKHQNTGTYVMNRQKLASGASGLQGFNEVAKAKGKTPRTEVIGVSQIDYDDELWAELEAKENEVIINVNRIRYLDDLPMTVEDLYIREKFLPENLKEAAFENSIFELIEQKIEIAYSHQEIEAVLIDKMMSIAFELPVGQPMFRATSNVFSVTGVPIMHDISYYRSDEYVFSNTLVRSQH
>NZ_CP023392.1|WP_096040001.1|1398381_1399725_+|Sapep-family-Mn(2+)-dependent-dipeptidase
METKIKALVEENWEDFLNDLAQVIRIPSVQGIAEANCPFGREPKAAVLQALEIAKGYGFETKLVNQAVGYAQFGESRVDQKYLGIIGHLDVVPADESNWDSPPFALSRRNGVLYARGILDNKGPIMSCLFGLKLIKDLGIQPKIPIRILFGSNEEMGSHDMPLYLEKEVPPIFGFTPDCKYPVVYGERGIVNLAIKTTIEDAATVKLGDFRGQMSRSIVPSELSVIFDEQKITALGKSSPSNAPEMGVNSITKLAHELSEILPSGALKTYFSWLDDHLSEEYYGGKLGIGYSDEASGKLIVTPVLIEKIDDQNLLLELAIRYPISVTQDMIITAIKEHLPQKSQVTVTRALKGTNFPIDNPYIKLLSDIYGSVTGLDVKPVTTTGATYARYMPNTVAFGPSFPGQKGIAHKENEYFVEADLKTNLIIYALAIYKLCLSASGNNTRTD
>NZ_CP023392.1|WP_096040002.1|1399740_1400709_+|N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase
MTYGIIATWAMAFEGISNAAKDLAKNGTIADNIEATIKKVEDFPFYKSVGYGGLPNEEMIVELDAGFMDGDNLDIGAVAGIQDFANPVSIARALSTEKLNNVLVAEGAAKYAQKMGFERKNMLTDRAMNHYKNRLKENSQGSESGIVPYRGHDTVGVVGVDMTGRIVSGTSTSGLFMKRAGRVGDSPIAGGGFYADSEVGAASATGLGEDLMKGCISYEIVRSMREGLSPQEACEQAVNELEARLIKRKGIAGDLSVVAIDKNGDYGCATNIDNFSFVVATDKIEPTVFIANRFAGKTVHKKASMAWLENYMQTRTAPLIEK
>NZ_CP023392.1|WP_061775391.1|1400790_1402281_-|hypothetical-protein
MKNILLDKESQYILKMTKLLSAAPNHELSLSDLEMELGLAKQTIKSYFKKLLNYCQEQGLTTFSVESNHFKMTPDTAFNIFKLRHYLIQKSVKFHIMFRIFTDTSTTFTNLHQELGISRSKCSVHIKELNDYLADYDCHINFIQKNPLLGEEHQIRFVFHNLFWGLDLNDIIEKTSSLEAVSSLLLDFVPTLDYSTFLRIKLNFYIFQINTRHGFFLAPEEDVFSTPDSPYVTYDNFFDKIEAIGFLDICPDLETKQRECRYLYFLFCRANLIMLETWKNTDLRVKHLHAPEIDDIIMQFQSKINFNLSVSELNYLHYNLILMNQEASIFKGINRIFDLEEVTNEVHHTEANTYTFINDFILNYRDQNVEFKALIQHFPNLFRHYLILLKNILRQHKQPLKILVETISTPIHREMLISQVRDVSPVPIIISTFNQLNGEQPDAIISNWMPENKYNDVPFFSTSLFFSDWKITNLNHFLNQIADRKNNFSLTNDFVD
>NZ_CP023392.1|WP_167372308.1|1402818_1407156_+|VaFE-repeat-containing-surface-anchored-protein
MYNYKNKVINGVMLVTILFNLMLALVGPLSKVVAETNNTTSLGDFGDSAGNTQADFYSGNTTKGVGKEILYDGIRYDRSSVAPTRTTLGAYYSGSLNDPRSYCTWSGRAIGEYPQDMNVPAQLIKDGDTISIRKYRGNMNTVTLSDYNPEDTYLTSIAKVAWLMDYVGETPEGDLRARRAGALGIIVHDSELEMNPFRTDITYHNNQYKLYQSNTWETDNSIKKLSAAGIYANEKDRTGLYAQLDALGEANKGPYGLVVNPIVQVGNTAVANFSYRVWNQGNKATNYVTDREQITATLSGPATFADGSKTKTVNVGTSFGPLTLTGNGKVSASLKTTRFPSTALYRYYDGSTQTMVTKGPNGDSLSGATSTDVVLTGKLKIKKVGVDTLTPYNGEYTYQGAQFGIYASKADAQNKANVLQVLTTGATGETPESNELVSGKIYYIRELVAPKGHKLSDDIKEVLLPPSTGTNTVVMTEYPDNEQYGRISIDKQAKHASLAGDKVFNANYSLVGAEYTVYTDANASIQAKDKGNNLVKLTTTSDGHAVSSELLLGTYYVKETKAPNGFLIDPTVYKVELKSTDQTTSVFDVNQSVTDTEVFGNTILNKVDDENGSIPQGKASLKGAKYSLYYADGTKVLWHAKFAPTLLNGTKVTTTDDSIVLETSKDTDDRYKVGVGHLALGDYYWQEIEAPEGMQIDTTKHPVNLAYADQNTSVVVSQTTSQEKVIKLKIRGKKELEKAQNETVMNQNNANGIEFTLTPKAGTNAPVQKTVTATYDKQEGYFSFDMPYGNYTLTETKGKEGYYDINPIDITMTDDGANVHVKIVDSVTGYIYHEADYSQSDINAMPKPILMPNVINVEDPLIKAKLRLEKKDAETGKKIPLAGVQFKIWDIQEGKYVTQVDPENTAQLTTTFKTDASGEIFLQKELTYGKNRYRISEVTAPENYEINLNDLVFSVDESTIVHETIGGNKVPVVTVQFNDKPAKSYIQLTKYFESLMGIEGEEGNWNFIWNHIRGWEGATFDVYVDKDITEADGKTIRVAPDGTRFSKDTKVATVSTDALGVAQTTSTLYVGDYYLVERKAPAGQYFDSNVKIPVSISFNGKDYIGTPGMVDRFDNNRQTVKVVLPKLEELVTGLDSDNKPVIGKQPGANKTFGLYNNDPIMGYPKGRNPLLPNQGLGVILKPNSLIRHYTTNTAGLIELNQKLPAGEYYFQESNAGENFALDTTHYYFRVADTNNDSVVAVDLYQKDANGNKVVLGEILNRLNPPKIGTTATDAEDGDKQLSLEKEVTVHDEVAYENLFTDRQYTLTGTLMNKATGQPLKDVTGHDVLVTKSFTPVTTKGSIGLDFTLDATHLANKDVVVFELLKETVADKEVAAHRDINDKGQTVHFEDKPKLPSTDGYPRRPLPMTGETQIAIGFFLSLIVSLVGILTRIKHKANKKTFKHEM
>NZ_CP023392.1|WP_096040004.1|1407321_1407684_+|hypothetical-protein
MYNYLKADLYMANLMLDHIQLVKKTQGQKIDIDYLVFLEHIAYNLDDISEETKAVFPEVDWTSVDQFRTFITYEVQHFKLGDIIETVSPEILMLSHTLPLLRDKLMKRLEYTRKEYVKEN
>NZ_CP023392.1|WP_061774639.1|1407667_1408495_+|methyltransferase-domain-containing-protein
MLKKIDKAAQYLAQNIDLLRCPLCHTSFRLDGYALICDNRHTYNLSKKGVVNFLTIKPDTTHYTRKMFEPRRNLIQAGMYAPVLNAIQHQLTPGNLLDVGSGEGSFLELLDVSGHKFGFDIALDGVNMATDLTELQAFFSLSDLTNLPFADQSMATVLNIFTPSNYREFDRVLSHGGQVIKVIPDRYYLQELRSAFGLPVDYDNGDVLAKFSENFPDFTQKEIHYEFDLPEQQRQDFLSMSPLEWRISETDKLEIAKNPPKKATIHVQILQGYKS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

16522 : 82980

Lactococcus_phage(26.67%)

integrase,tRNA,capsid,plate,holin,portal,tail,protease,head,terminase

attL 16031:16046|attR 18312:18327

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
16031:16046	attL	NA	NA	NA	NA
WP_096040487.1\|16522_17320_+\|integrase	tyrosine-type recombinase/integrase	A0A0H4TI16	Erysipelothrix_phage	1.1e-15	27.2
WP_157738460.1\|17401_17914_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_096039169.1\|17873_19394_-	hypothetical protein	NA	NA	NA	NA
18312:18327	attR	NA	NA	NA	NA
WP_096039170.1\|19390_20830_-	type I restriction-modification system subunit M	A0A220A2U4	Liberibacter_phage	9.1e-29	27.2
WP_096039171.1\|20917_24142_-	type I restriction-modification system endonuclease	A0A097BY72	Enterococcus_phage	1.1e-05	28.6
WP_061774409.1\|24554_26378_-	elongation factor 4	A0A2K9L2P9	Tupanvirus	3.2e-18	39.6
WP_061774392.1\|26454_26868_-	nucleoside-diphosphate kinase	D2E8E1	Anguillid_herpesvirus	5.1e-25	44.4
WP_061774393.1\|26995_27430_-	hypothetical protein	NA	NA	NA	NA
WP_096039173.1\|27430_28198_-	ATP-binding cassette domain-containing protein	W6JKT0	Anomala_cuprea_entomopoxvirus	2.0e-11	27.3
WP_096039174.1\|28187_29027_-	ABC transporter permease	NA	NA	NA	NA
WP_096039175.1\|29063_30065_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_096039176.1\|30114_30579_-	hypothetical protein	NA	NA	NA	NA
WP_096039177.1\|30795_32424_+	fibronectin/fibrinogen-binding protein	A0A0P0YM59	Yellowstone_lake_phycodnavirus	1.2e-08	33.9
WP_061774399.1\|32679_33657_+	L-lactate dehydrogenase	NA	NA	NA	NA
WP_061774400.1\|33890_34610_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_096040488.1\|34667_35777_-	quinolinate synthase NadA	NA	NA	NA	NA
WP_096039178.1\|35840_36692_-	carboxylating nicotinate-nucleotide diphosphorylase	NA	NA	NA	NA
WP_096040489.1\|36699_38202_-	L-aspartate oxidase	NA	NA	NA	NA
WP_096039179.1\|38365_39301_-	ABC transporter permease	NA	NA	NA	NA
WP_061775358.1\|39293_39989_-	cell division ATP-binding protein FtsE	G9BWD6	Planktothrix_phage	1.3e-28	34.8
WP_061775357.1\|40064_41165_-	peptide chain release factor 2	NA	NA	NA	NA
WP_096039180.1\|41187_42243_-\|tRNA	tRNA epoxyqueuosine(34) reductase QueG	NA	NA	NA	NA
WP_096039181.1\|42277_42808_-	dihydrofolate reductase	NA	NA	NA	NA
WP_096039182.1\|42970_45256_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_096039183.1\|45475_46348_+	phosphoesterase	NA	NA	NA	NA
WP_031365692.1\|46413_46941_+	DUF402 domain-containing protein	NA	NA	NA	NA
WP_061775352.1\|47049_47289_-	hypothetical protein	NA	NA	NA	NA
WP_096039184.1\|47323_47938_-	hypothetical protein	NA	NA	NA	NA
WP_061775350.1\|47981_48536_-	hypothetical protein	NA	NA	NA	NA
WP_157738461.1\|48552_50580_-	hypothetical protein	NA	NA	NA	NA
WP_096039186.1\|50915_52955_-	hypothetical protein	NA	NA	NA	NA
WP_061774786.1\|53160_53418_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_096039187.1\|53436_54042_-	hypothetical protein	NA	NA	NA	NA
WP_096039188.1\|56335_57217_-	ROK family protein	NA	NA	NA	NA
WP_061774789.1\|57327_59274_-	PTS sugar transporter subunit IIBCA	NA	NA	NA	NA
WP_157738462.1\|59478_60951_+	sucrose-6-phosphate hydrolase	F8WPR5	Bacillus_phage	6.1e-20	25.3
WP_096039190.1\|60989_61946_+	LacI family transcriptional regulator	NA	NA	NA	NA
WP_096039191.1\|62872_64837_-	potassium transporter Kup	M1HZV6	Acanthocystis_turfacea_Chlorella_virus	4.4e-66	37.2
WP_096039192.1\|65193_65751_-	hypothetical protein	A0A0N6WMQ4	Lactococcus_phage	7.1e-14	32.1
WP_096039193.1\|65762_66095_-\|holin	holin	A0A1X9IGI3	Lactococcus_phage	3.1e-33	61.8
WP_096039194.1\|66107_67832_-\|plate	BppU family phage baseplate upper protein	V9VDC8	Lactococcus_phage	2.7e-75	67.1
WP_096039195.1\|67812_68964_-	hypothetical protein	A0A2K9VBZ3	Lactobacillus_phage	3.3e-45	42.3
WP_157738463.1\|69075_70143_-	hypothetical protein	A0A1C8E983	Bacillus_phage	1.6e-86	47.3
WP_096039197.1\|70139_70832_-\|tail	phage tail protein	A0A1B0T6A0	Bacillus_phage	4.2e-40	40.0
WP_096039198.1\|70835_73571_-	hypothetical protein	E3W8G4	Leuconostoc_phage	2.1e-90	52.3
WP_096039199.1\|73692_73890_-	hypothetical protein	Q0H231	Geobacillus_phage	2.1e-05	46.0
WP_096039200.1\|73895_74255_-	hypothetical protein	D2XR24	Bacillus_phage	1.5e-28	52.9
WP_096039201.1\|74323_74911_-\|tail	phage tail protein	A0A0U4JWV5	Exiguobacterium_phage	5.0e-42	47.6
WP_096039202.1\|74942_76127_-	hypothetical protein	C5J968	Streptococcus_phage	5.2e-14	39.6
WP_096039203.1\|76127_76484_-	hypothetical protein	A0A290FZT5	Caldibacillus_phage	4.1e-23	52.9
WP_096039204.1\|76480_76789_-\|head	phage head closure protein	Q9AZY2	Lactococcus_phage	3.7e-12	43.0
WP_096039205.1\|76788_77064_-	hypothetical protein	Q9AZY3	Lactococcus_phage	2.7e-22	63.5
WP_096039206.1\|77056_77245_-	hypothetical protein	NA	NA	NA	NA
WP_096039207.1\|77299_78520_-\|capsid	phage major capsid protein	A0A249XUE5	Enterococcus_phage	7.0e-38	34.8
WP_157738464.1\|78510_79092_-\|head,protease	HK97 family phage prohead protease	Q9AZY6	Lactococcus_phage	5.6e-62	65.4
WP_096039208.1\|79088_80297_-\|portal	phage portal protein	Q9AZY7	Lactococcus_phage	1.1e-115	56.4
WP_096039209.1\|80318_82130_-\|terminase	terminase large subunit	Q9AZY8	Lactococcus_phage	4.1e-167	52.0
WP_096039210.1\|82130_82502_-	hypothetical protein	A0A0U4JV93	Exiguobacterium_phage	2.1e-14	52.2
WP_096039211.1\|82659_82980_-	HNH endonuclease	A0A2I7SC48	Paenibacillus_phage	3.5e-21	54.5

DBSCAN-SWA_2

158953 : 167927

uncultured_Caudovirales_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061774451.1\|158953_160021_-	iron ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	2.0e-20	28.0
WP_096039265.1\|160413_160845_-	hypothetical protein	NA	NA	NA	NA
WP_096039266.1\|160858_162028_-	nucleotide sugar dehydrogenase	M1HV26	Paramecium_bursaria_Chlorella_virus	7.8e-95	49.7
WP_061774454.1\|162354_162825_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	1.2e-41	52.9
WP_096039267.1\|162839_165143_-	ribonuclease R	Q0GXV6	Lactococcus_phage	4.2e-92	40.9
WP_031365773.1\|165355_165592_-	preprotein translocase subunit SecG	NA	NA	NA	NA
WP_096039268.1\|165775_166699_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	2.8e-87	51.0
WP_061774457.1\|166941_167166_-	DUF4059 family protein	NA	NA	NA	NA
WP_096039269.1\|167165_167927_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.0e-30	39.2

DBSCAN-SWA_3

186188 : 202879

Lactococcus_phage(38.89%)

capsid,plate,holin,portal,tail,protease,head,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096039280.1\|186188_186524_-\|holin	holin	A0A1X9IGI3	Lactococcus_phage	1.1e-33	62.2
WP_096039281.1\|186534_187707_-\|plate	BppU family phage baseplate upper protein	D2IYX9	Enterococcus_phage	1.8e-27	44.3
WP_167372291.1\|187699_190018_-	hypothetical protein	A0A1C8E983	Bacillus_phage	3.4e-86	45.8
WP_096039283.1\|190014_190710_-\|tail	phage tail protein	A0A2H4J851	uncultured_Caudovirales_phage	1.7e-28	35.6
WP_096039284.1\|190713_193449_-	hypothetical protein	E3W8G4	Leuconostoc_phage	6.1e-90	52.3
WP_096039199.1\|193570_193768_-	hypothetical protein	Q0H231	Geobacillus_phage	2.1e-05	46.0
WP_096039200.1\|193773_194133_-	hypothetical protein	D2XR24	Bacillus_phage	1.5e-28	52.9
WP_096039201.1\|194201_194789_-\|tail	phage tail protein	A0A0U4JWV5	Exiguobacterium_phage	5.0e-42	47.6
WP_096039285.1\|194820_195993_-	hypothetical protein	Q9AZY0	Lactococcus_phage	6.1e-15	41.9
WP_096039286.1\|195993_196347_-	hypothetical protein	A0A2H4JAN0	uncultured_Caudovirales_phage	6.7e-18	43.5
WP_096039287.1\|196346_196658_-\|head	phage head closure protein	Q9AZY2	Lactococcus_phage	2.8e-12	50.7
WP_096039288.1\|196654_196933_-	hypothetical protein	Q9AZY3	Lactococcus_phage	2.3e-21	59.8
WP_096039289.1\|196925_197114_-	hypothetical protein	NA	NA	NA	NA
WP_096039290.1\|197171_198404_-\|capsid	phage major capsid protein	A0A249XUE5	Enterococcus_phage	3.2e-38	35.1
WP_157738467.1\|198394_198976_-\|head,protease	HK97 family phage prohead protease	Q9AZY6	Lactococcus_phage	4.5e-59	64.9
WP_096039291.1\|198976_200185_-\|portal	phage portal protein	Q9AZY7	Lactococcus_phage	1.8e-115	59.5
WP_167372292.1\|200208_202026_-\|terminase	terminase large subunit	Q9AZY8	Lactococcus_phage	8.2e-168	52.2
WP_096039293.1\|202031_202400_-	hypothetical protein	Q0H265	Geobacillus_phage	1.1e-15	51.9
WP_096039211.1\|202558_202879_-	HNH endonuclease	A0A2I7SC48	Paenibacillus_phage	3.5e-21	54.5

DBSCAN-SWA_4

380367 : 389939

Lactococcus_phage(80.0%)

integrase

attL 378468:378494|attR 389150:389176

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
378468:378494	attL	NA	NA	NA	NA
WP_096039409.1\|380367_380832_-	hypothetical protein	Q9AZI4	Lactococcus_phage	1.4e-10	48.6
WP_096039410.1\|381267_382914_-	DNA primase	Q9AZI5	Lactococcus_phage	3.2e-235	72.7
WP_096039411.1\|382924_383722_-	hypothetical protein	Q9AZI6	Lactococcus_phage	2.5e-105	66.7
WP_096039412.1\|383725_384055_-	hypothetical protein	Q9AZI7	Lactococcus_phage	1.3e-36	71.7
WP_096039413.1\|384098_384290_-	hypothetical protein	NA	NA	NA	NA
WP_096039414.1\|384299_384515_-	hypothetical protein	NA	NA	NA	NA
WP_096039415.1\|384528_384813_-	hypothetical protein	Q9AZJ1	Lactococcus_phage	2.3e-21	60.2
WP_096039416.1\|384809_385322_-	hypothetical protein	NA	NA	NA	NA
WP_096039417.1\|385560_386259_-	hypothetical protein	R9QNB1	Lactococcus_phage	5.0e-57	54.9
WP_096039418.1\|386305_386500_-	transcriptional regulator	R9QNG3	Lactococcus_phage	6.1e-05	45.2
WP_096039419.1\|386653_387442_+	helix-turn-helix transcriptional regulator	L0P7E1	Lactobacillus_phage	2.3e-05	35.3
WP_096039420.1\|387952_389143_+\|integrase	site-specific integrase	Q9AZK8	Lactococcus_phage	1.2e-90	46.6
WP_167372334.1\|389366_389939_-	C40 family peptidase	A0A1V0DZX6	Clostridioides_phage	4.6e-16	40.6
389150:389176	attR	NA	NA	NA	NA

DBSCAN-SWA_5

535487 : 541823

Streptococcus_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096039494.1\|535487_536414_+	cysteine synthase A	A0A1X9I5K7	Streptococcus_phage	1.1e-123	73.9
WP_061775217.1\|536547_537159_-	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	4.0e-66	57.1
WP_061775224.1\|537354_538191_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_167372337.1\|538314_539175_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	6.1e-97	67.2
WP_096040505.1\|539174_539501_-	DUF972 family protein	M1PFV3	Streptococcus_phage	4.4e-16	41.9
WP_061775215.1\|539512_540283_-	stage 0 sporulation family protein	NA	NA	NA	NA
WP_061775214.1\|540325_541189_-	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	2.8e-65	47.1
WP_061775213.1\|541175_541823_-	dTMP kinase	M1PSC7	Streptococcus_phage	7.6e-68	60.0

DBSCAN-SWA_6

1524267 : 1563559

Lactococcus_phage(37.14%)

integrase,capsid,plate,holin,portal,tail,head,terminase

attL 1523580:1523594|attR 1553641:1553655

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1523580:1523594	attL	NA	NA	NA	NA
WP_061775465.1\|1524267_1525974_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.3e-29	24.8
WP_096040065.1\|1525973_1527878_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.1e-49	30.9
WP_096040066.1\|1527972_1529103_-\|integrase	site-specific integrase	A0A1P8BMN3	Lactococcus_phage	7.6e-47	35.8
WP_096040067.1\|1529226_1530228_-	Abi family protein	X2L062	Streptococcus_phage	6.5e-58	39.6
WP_096040068.1\|1530526_1530901_-	PH domain-containing protein	A5GYQ0	Lactococcus_phage	1.7e-56	90.3
WP_096040069.1\|1530962_1531550_-	hypothetical protein	Q9AZF6	Lactococcus_phage	5.5e-57	54.1
WP_096040070.1\|1531562_1531907_-	helix-turn-helix domain-containing protein	A0A1X9IGD3	Lactococcus_phage	2.8e-45	79.8
WP_031366573.1\|1532327_1532519_+	hypothetical protein	Q9AZF4	Lactococcus_phage	5.6e-19	74.6
WP_061774530.1\|1532533_1532734_+	hypothetical protein	NA	NA	NA	NA
WP_096040071.1\|1532741_1533014_-	DUF3892 domain-containing protein	A0A059NT53	Lactococcus_phage	2.1e-11	43.7
WP_096040072.1\|1533204_1533390_+	helix-turn-helix transcriptional regulator	A0A1X9I6I3	Streptococcus_phage	1.7e-09	52.5
WP_096040073.1\|1533462_1533696_+	hypothetical protein	NA	NA	NA	NA
WP_096040074.1\|1533707_1533935_+	hypothetical protein	NA	NA	NA	NA
WP_096040075.1\|1533931_1534204_+	hypothetical protein	NA	NA	NA	NA
WP_096040076.1\|1534323_1534770_+	hypothetical protein	NA	NA	NA	NA
WP_096040077.1\|1534773_1535316_+	HNH endonuclease	A0A218KBW3	Bacillus_phage	9.6e-32	41.7
WP_096040078.1\|1535312_1536479_+	DUF2800 domain-containing protein	A7J278	Streptococcus_phage	1.2e-100	51.2
WP_096040079.1\|1536511_1537069_+	DUF2815 family protein	Q4ZD46	Staphylococcus_phage	1.2e-42	54.3
WP_096040081.1\|1537316_1539236_+	DNA polymerase	D2J043	Enterococcus_phage	7.5e-188	55.5
WP_096040082.1\|1539253_1541638_+	DNA primase	D2J048	Enterococcus_phage	4.7e-115	52.6
WP_096040083.1\|1541929_1542217_+	VRR-NUC domain-containing protein	D2J049	Enterococcus_phage	3.9e-16	46.2
WP_096040527.1\|1542294_1543539_+	DEAD/DEAH box helicase	D2J050	Enterococcus_phage	2.4e-134	56.1
WP_167372312.1\|1543625_1543781_-	hypothetical protein	NA	NA	NA	NA
WP_167372313.1\|1544054_1544432_+	transcriptional regulator	NA	NA	NA	NA
WP_096040085.1\|1544623_1545328_+	hypothetical protein	NA	NA	NA	NA
WP_096040086.1\|1545427_1545889_+	helix-turn-helix domain-containing protein	Q9AYX3	Lactococcus_phage	9.0e-55	69.8
WP_096040087.1\|1545881_1547252_+\|terminase	phage terminase large subunit	B5SP27	Lactococcus_phage	3.1e-236	85.6
WP_096040088.1\|1547266_1548721_+\|portal	phage portal protein	A0A1S5SAI0	Streptococcus_phage	1.3e-144	55.1
WP_157738520.1\|1548713_1550417_+	hypothetical protein	A0A1P8BLD7	Lactococcus_phage	5.2e-164	52.2
WP_096040090.1\|1550420_1550639_+	hypothetical protein	A0A1P8BLD4	Lactococcus_phage	9.5e-31	81.9
WP_096040091.1\|1550824_1551388_+	scaffolding protein	D2J060	Enterococcus_phage	2.5e-22	37.1
WP_096040092.1\|1551405_1552320_+\|capsid	capsid protein	Q20DD4	Lactobacillus_phage	1.6e-82	53.4
WP_096040093.1\|1552643_1553174_+	hypothetical protein	D2J063	Enterococcus_phage	3.0e-38	46.6
WP_096040094.1\|1553170_1553488_+\|head,tail	phage head-tail adapter protein	A0A1S5S9Y9	Streptococcus_phage	5.5e-11	35.6
WP_096040095.1\|1553487_1553886_+	HK97 gp10 family phage protein	A0A1S5SAB8	Streptococcus_phage	2.5e-37	59.4
1553641:1553655	attR	NA	NA	NA	NA
WP_096040096.1\|1553885_1554263_+	hypothetical protein	NA	NA	NA	NA
WP_096040097.1\|1554263_1554884_+	hypothetical protein	A0A1S5S9Y8	Streptococcus_phage	1.1e-47	48.7
WP_096040098.1\|1554939_1555182_+	hypothetical protein	NA	NA	NA	NA
WP_096040099.1\|1555178_1555700_+	hypothetical protein	D2J068	Enterococcus_phage	7.1e-08	27.5
WP_143188716.1\|1555768_1556017_+	hypothetical protein	NA	NA	NA	NA
WP_157738521.1\|1555973_1558271_+\|tail	phage tail protein	A5GYM8	Lactococcus_phage	9.9e-78	68.8
WP_096040101.1\|1558272_1559133_+\|plate	phage baseplate protein	NA	NA	NA	NA
WP_157738522.1\|1559162_1559663_+	hypothetical protein	B6D7I8	Listeria_phage	3.2e-13	33.8
WP_096040103.1\|1559659_1560703_+	hypothetical protein	Q5K5I4	Oenococcus_phage	3.2e-47	34.7
WP_096040104.1\|1560713_1561586_+	hypothetical protein	NA	NA	NA	NA
WP_096040105.1\|1561607_1562009_+\|holin	phage holin family protein	F0PIJ6	Enterococcus_phage	3.2e-40	62.3
WP_096040106.1\|1562005_1563271_+	LysM peptidoglycan-binding domain-containing protein	Q8LTP4	Lactococcus_phage	2.5e-139	60.2
WP_167372314.1\|1563388_1563559_+	hypothetical protein	A0A182BQ76	Lactococcus_phage	3.1e-05	61.1

DBSCAN-SWA_7

2085205 : 2094127

Enterococcus_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061774280.1\|2085205_2087023_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	A7IW18	Paramecium_bursaria_Chlorella_virus	1.7e-88	37.2
WP_096040406.1\|2087144_2087837_-	helix-turn-helix transcriptional regulator	A0A1S5SD15	Streptococcus_phage	1.4e-64	50.0
WP_061774282.1\|2087936_2088578_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_061774283.1\|2088681_2088900_+	glutaredoxin-like protein NrdH	A0A1W6JHV4	Lactococcus_phage	1.3e-11	47.6
WP_061774284.1\|2088896_2089253_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	D9J0S1	Brochothrix_phage	3.7e-16	35.2
WP_061774285.1\|2089257_2091411_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	5.2e-254	60.4
WP_167372353.1\|2091531_2092491_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A096XT60	Enterococcus_phage	1.1e-123	67.1
WP_096040408.1\|2092546_2093416_-	glutathione-dependent reductase	NA	NA	NA	NA
WP_004260832.1\|2093451_2093589_-	hypothetical protein	NA	NA	NA	NA
WP_096040409.1\|2093716_2094127_-	arsenate reductase (thioredoxin)	A0A2H4PQT9	Staphylococcus_phage	1.1e-30	46.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP023394

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 17370

Staphylococcus_phage(42.86%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096040596.1\|229_1186_+	LacI family transcriptional regulator	NA	NA	NA	NA
WP_096040581.1\|1318_2200_+	ROK family protein	NA	NA	NA	NA
WP_096040582.1\|2939_5927_+	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	1.2e-19	26.2
WP_096040583.1\|5966_7514_+	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	7.4e-101	39.3
WP_096040584.1\|7510_8749_+	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	4.6e-29	27.2
WP_096040585.1\|8762_9608_+	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_072353702.1\|10604_11024_+	helix-turn-helix transcriptional regulator	A0A0D4DD29	Staphylococcus_phage	4.4e-08	35.3
WP_096040586.1\|11365_12649_+	RepB family plasmid replication initiator protein	NA	NA	NA	NA
WP_072353682.1\|12766_13609_+	ParA family protein	A0A1X9I765	Streptococcus_phage	4.8e-54	47.9
WP_096040587.1\|13713_13926_+	hypothetical protein	NA	NA	NA	NA
WP_096040588.1\|14103_14784_-\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	3.6e-108	83.6
WP_096040589.1\|15016_16192_-	dipeptidyl aminopeptidase	NA	NA	NA	NA
WP_096040597.1\|16307_16610_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_040087761.1\|16824_17370_-\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	3.1e-30	44.9

DBSCAN-SWA_2

21352 : 21631

Hokovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096040598.1\|21352_21631_+	ATP-binding domain-containing protein	A0A1V0SG90	Hokovirus	3.0e-05	44.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP023392

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP023394

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection