CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP023387	Escherichia coli strain 1190 plasmid p86, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP023386	Escherichia coli strain 1190 chromosome, complete genome	4 crisprs	csa3,PD-DExK,cas3,cas14j,DEDDh,DinG,RT,c2c9_V-U4	0	4	9	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP023386_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023386_1

1104214-1104486

Orphan

I-E

Consensus_repeat	Method
GAGTTCCCCGCGCGAGCGGGGATAAACCG	PILER-CR
GAGTTCCCCGCGCGAGCGGGGATAAACCG	CRISPRCasFinder
GAGTTCCCCGCGCGAGCGGGGATAAACCG	CRT

4 spacers

The CRISPR arrays of NZ_CP023386_1

>merge|NZ_CP023386|1|1104214-1104486|PILER-CR,CRISPRCasFinder,CRT
GAGTTCCCCGCGCGAGCGGGGATAAACCGCGCGCAATGCTGCATTATTTGTGTCGGGCTGGGAGTTCCCCGCGCGAGCGGGGATAAACCGAATACGCATTAAAATGTTTGCAAGCCGCAAACGAGTTCCCCGCGCGAGCGGGGATAAACCGACAATCCCACGCCGATAATCTCTATACAGCAAGAGTTCCCCGCGCGAGCGGGGATAAACCGGATAGGTGTTACACATATGACCAGGCACTGGCGAGTTCCCCGCGTCAGCGGGGATAACCAT

>NZ_CP023386|1|1|1104214-1104425|PILER-CR
GAGTTCCCCGCGCGAGCGGGGATAAACCG	CGCGCAATGCTGCATTATTTGTGTCGGGCTGG
GAGTTCCCCGCGCGAGCGGGGATAAACCG	AATACGCATTAAAATGTTTGCAAGCCGCAAAC
GAGTTCCCCGCGCGAGCGGGGATAAACCG	ACAATCCCACGCCGATAATCTCTATACAGCAA
GAGTTCCCCGCGCGAGCGGGGATAAACCG

>NZ_CP023386|1|1|1104214-1104486|CRISPRCasFinder
GAGTTCCCCGCGCGAGCGGGGATAAACCG	CGCGCAATGCTGCATTATTTGTGTCGGGCTGG
GAGTTCCCCGCGCGAGCGGGGATAAACCG	AATACGCATTAAAATGTTTGCAAGCCGCAAAC
GAGTTCCCCGCGCGAGCGGGGATAAACCG	ACAATCCCACGCCGATAATCTCTATACAGCAA
GAGTTCCCCGCGCGAGCGGGGATAAACCG	GATAGGTGTTACACATATGACCAGGCACTGGC
GAGTTCCCCGCGTCAGCGGGGATAACCAT

>NZ_CP023386|1|1|1104214-1104486|CRT
GAGTTCCCCGCGCGAGCGGGGATAAACCG	CGCGCAATGCTGCATTATTTGTGTCGGGCTGG
GAGTTCCCCGCGCGAGCGGGGATAAACCG	AATACGCATTAAAATGTTTGCAAGCCGCAAAC
GAGTTCCCCGCGCGAGCGGGGATAAACCG	ACAATCCCACGCCGATAATCTCTATACAGCAA
GAGTTCCCCGCGCGAGCGGGGATAAACCG	GATAGGTGTTACACATATGACCAGGCACTGGC
GAGTTCCCCGCGTCAGCGGGGATAACCAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023386.1\|WP_000186450.1\|1090806_1093563_-\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NZ_CP023386.1\|WP_001164519.1\|1106036_1107314_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NZ_CP023386.1\|WP_000059296.1\|1108487_1109942_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_CP023386.1\|WP_000581937.1\|1097280_1097529_+\|type-II-toxin-antitoxin-system-antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
NZ_CP023386.1\|WP_001199984.1\|1103202_1103874_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP023386.1\|WP_001469274.1\|1113975_1115247_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182194
NZ_CP023386.1\|WP_001469275.1\|1112125_1112986_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
NZ_CP023386.1\|WP_000210878.1\|1098953_1100591_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP023386.1\|WP_001469276.1\|1111349_1112129_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
NZ_CP023386.1\|WP_000109536.1\|1113724_1113985_-\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|225289
NZ_CP023386.1\|WP_001268474.1\|1102036_1102909_-\|YgcG-family-protein	unknown	unknown	gnl\|CDD\|224429
NZ_CP023386.1\|WP_000254736.1\|1097528_1097864_+\|endoribonuclease-MazF	unknown	unknown	gnl\|CDD\|182138
NZ_CP023386.1\|WP_000226799.1\|1094968_1097203_+\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP023386.1\|WP_000039707.1\|1104531_1106010_-\|sugar-kinase	unknown	unknown	gnl\|CDD\|212662
NZ_CP023386.1\|WP_001071667.1\|1097934_1098726_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP023386.1\|WP_001098096.1\|1110034_1111372_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP023386.1\|WP_001469277.1\|1107632_1108418_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187605
NZ_CP023386.1\|WP_000036723.1\|1100678_1101977_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP023386.1\|WP_000046786.1\|1093619_1094921_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP023386.1\|WP_001130278.1\|1113132_1113708_-\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|224865

Protein	Function_ID	Function_description	E-value
NZ_CP023386.1\|WP_000186450.1\|1090806_1093563_-\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NZ_CP023386.1\|WP_001164519.1\|1106036_1107314_-\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	3.92611e-30
NZ_CP023386.1\|WP_000059296.1\|1108487_1109942_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	2.4401e-81
NZ_CP023386.1\|WP_000581937.1\|1097280_1097529_+\|type-II-toxin-antitoxin-system-antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48
NZ_CP023386.1\|WP_001199984.1\|1103202_1103874_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	6.64908e-155
NZ_CP023386.1\|WP_001469274.1\|1113975_1115247_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|182194	PRK10015, PRK10015, oxidoreductase; Provisional.	5.14605e-126
NZ_CP023386.1\|WP_001469275.1\|1112125_1112986_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	2.39082e-89
NZ_CP023386.1\|WP_000210878.1\|1098953_1100591_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP023386.1\|WP_001469276.1\|1111349_1112129_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	4.27106e-64
NZ_CP023386.1\|WP_000109536.1\|1113724_1113985_-\|ferredoxin-family-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	4.39108e-42
NZ_CP023386.1\|WP_001268474.1\|1102036_1102909_-\|YgcG-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	1.45601e-95
NZ_CP023386.1\|WP_000254736.1\|1097528_1097864_+\|endoribonuclease-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	1.6692e-74
NZ_CP023386.1\|WP_000226799.1\|1094968_1097203_+\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP023386.1\|WP_000039707.1\|1104531_1106010_-\|sugar-kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	1.67284e-107
NZ_CP023386.1\|WP_001071667.1\|1097934_1098726_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.6559e-159
NZ_CP023386.1\|WP_001098096.1\|1110034_1111372_+\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.13172e-51
NZ_CP023386.1\|WP_001469277.1\|1107632_1108418_+\|SDR-family-oxidoreductase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	9.12307e-140
NZ_CP023386.1\|WP_000036723.1\|1100678_1101977_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP023386.1\|WP_000046786.1\|1093619_1094921_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP023386.1\|WP_001130278.1\|1113132_1113708_-\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	1.96043e-88

>NZ_CP023386.1|WP_001199984.1|1103202_1103874_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILGKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLMPLTDLLEKNGFSCQIETSGTHEVRCTSNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP023386.1|WP_001268474.1|1102036_1102909_-|YgcG-family-protein
MRYFIPIFTFVCSFVAAQPTIVPSLQQQVTDLTSSLNSQEKKELTYKLESIFNNTQVQIAVLIVPTTKDETIEKYATRVFDNWRLGDAKRNDGILIIVAWSDRTVRIQVGYGLEEKVTDALAGDIIRSNMIPAFKQQKLAQGLELAINALNNQLTSQHQYPANPSEIESASSSDHYYFAIFWVFAVMFFPFWFFHQGSNFCRACKSSVCISAIYLLDLFLFSDKTFSIAVFFFFFTFTTIMVFTCLCVLQKKASGRSYHSDNSGSGGGSSGGGFSGGGGSSGGGGASGRW
>NZ_CP023386.1|WP_000036723.1|1100678_1101977_+|phosphopyruvate-hydratase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP023386.1|WP_000210878.1|1098953_1100591_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>NZ_CP023386.1|WP_001071667.1|1097934_1098726_+|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAGNSREVLARWEEIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>NZ_CP023386.1|WP_000254736.1|1097528_1097864_+|endoribonuclease-MazF
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGKVAPEELQLIKAKINVLIG
>NZ_CP023386.1|WP_000581937.1|1097280_1097529_+|type-II-toxin-antitoxin-system-antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>NZ_CP023386.1|WP_000226799.1|1094968_1097203_+|GTP-diphosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRECVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>NZ_CP023386.1|WP_000046786.1|1093619_1094921_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKALFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLDSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVAGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLHNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK
>NZ_CP023386.1|WP_000186450.1|1090806_1093563_-|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSTEYGMSLQNRESIGQLISVLHRRHSDIVRAISVYDENNRLFVTSNFHLDPSSMQLGSNVPFPRQLTVTRDGDIMILRTPIISESYSPDESPSSDAKNSQNMLGYIALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREPLTMQHERLAKAVSMTDFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHHKQNTLLPVTDESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNLLLRYKPGSGISSRVVTPEVNEIVVNPNATLDWQLALRQAAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGENPEGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELLELLDEMDNVAREASKILG
>NZ_CP023386.1|WP_000039707.1|1104531_1106010_-|sugar-kinase
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKSWAWSEEAAVMDKFNIPRHMLFDVQMPGTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETTVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDAKAQDLSPEDLLNKKASCVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDKMVRVKDIFMPVESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGELGNEDSIQSWSNA
>NZ_CP023386.1|WP_001164519.1|1106036_1107314_-|MFS-transporter
MQHNSCRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSASLKTVIIIYSVVYILLGILCWFFVSDNNNLRNTNNEEKHSFQLSDILAVLRIRTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSVLGLLALTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGYWQDTLPAAEAYRNMWLMGMAALAMVIVFTFLLFQKIRTADSAPAMASSK
>NZ_CP023386.1|WP_001469277.1|1107632_1108418_+|SDR-family-oxidoreductase
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGETKEMIEKQGVEVDFMQVDITAKGAPQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASPASNYVNGHLLVVDGGYLVR
>NZ_CP023386.1|WP_000059296.1|1108487_1109942_+|FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEGIAEIVARYPQCQRVDSKLIETWFNHLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWTLLEGLKKQFDPNGIMNTGTIYPIEK
>NZ_CP023386.1|WP_001098096.1|1110034_1111372_+|MFS-transporter
MNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFIGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISESPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVATATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLMLLAAVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>NZ_CP023386.1|WP_001469276.1|1111349_1112129_+|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNILLAFKAEPDAGMLAEKEWQAAAQGNSGPDVSLLRSLLGADEQAAAALLLAQRKNGTSMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEFVARHIAEWQRQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDAPFITLEQRTENGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAESPAMQCLQLARAEQQRGATLIDGQTVAEKAQKLWQDYLRQRMQP
>NZ_CP023386.1|WP_001469275.1|1112125_1112986_+|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNIAIVTINQENAAIASWLAEQDFSGCTLAHWHIEPQPVVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHWGNALTATLQTEKRPLCLSLARQAGADKNATLPSGMQQLNIVPGALPDWLVSIENLKNVTRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEALVTNIHADCQ
>NZ_CP023386.1|WP_001130278.1|1113132_1113708_-|glycerol-3-phosphate-responsive-antiterminator
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISQIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>NZ_CP023386.1|WP_000109536.1|1113724_1113985_-|ferredoxin-family-protein
MSVARNLWRVADAPHIVPADSVERQTVQRLINACPAGLFSLTPEGDLRVDYRGCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG
>NZ_CP023386.1|WP_001469274.1|1113975_1115247_-|FAD-dependent-oxidoreductase
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAETPGSKNLSGGRLYTHALAELLPQFHLTAPLERRITHESLSLLTPDGATTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLALETSAIEERFHLENNEGAALLFSGGICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLARFKTHPAVHPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLVGDALRSCVNTGISVRGMDMALAGAQAAAQTLISACLHREPQNLFPLYHHNVERSLLWDVLQRYQHVPALLQRPGWYRAWPALMQDISRDLWDQGDKPVPPLRQLFWRHLRRHGLWHLAGDVIRSLRCL

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Crispr_ID: NZ_CP023386_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023386_2

2268956-2269079

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP023386_2

>merge|NZ_CP023386|2|2268956-2269079|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>NZ_CP023386|2|2|2268956-2269079|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023386.1\|WP_000701039.1\|2278231_2279401_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP023386.1\|WP_000007283.1\|2279546_2280128_-\|superoxide-dismutase-[Fe]	unknown	unknown	gnl\|CDD\|182534
NZ_CP023386.1\|WP_000587586.1\|2265961_2266774_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182159
NZ_CP023386.1\|WP_001295403.1\|2258397_2259810_-\|pyruvate-kinase-PykF	unknown	unknown	gnl\|CDD\|181699
NZ_CP023386.1\|WP_000716944.1\|2266779_2268390_-\|FAD-NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|182134
NZ_CP023386.1\|WP_001602609.1\|2264507_2265176_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|274451
NZ_CP023386.1\|WP_000102278.1\|2277976_2278066_+\|stress-response-protein-YnhF	unknown	unknown	unknown
NZ_CP023386.1\|WP_001174939.1\|2270691_2272065_-\|multidrug-efflux-MATE-transporter-MdtK	unknown	unknown	gnl\|CDD\|234981
NZ_CP023386.1\|WP_000528342.1\|2260366_2260576_+\|fumarate-hydratase-FumD	unknown	unknown	gnl\|CDD\|182359
NZ_CP023386.1\|WP_000493947.1\|2272279_2272921_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846
NZ_CP023386.1\|WP_000269493.1\|2275723_2276656_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
NZ_CP023386.1\|WP_000190982.1\|2276652_2277678_-\|HTH-type-transcriptional-repressor-PurR	unknown	unknown	gnl\|CDD\|236739
NZ_CP023386.1\|WP_001070227.1\|2261031_2261658_+\|ferredoxin-like-protein	unknown	unknown	gnl\|CDD\|182135
NZ_CP023386.1\|WP_001069968.1\|2265172_2265958_+\|thiosulfate-reductase-cytochrome-B-subunit	unknown	unknown	gnl\|CDD\|184968
NZ_CP023386.1\|WP_001273485.1\|2261678_2263781_+\|aldehyde-ferredoxin-oxidoreductase	unknown	unknown	gnl\|CDD\|236629
NZ_CP023386.1\|WP_000504325.1\|2263784_2264444_+\|YdhW-family-putative-oxidoreductase-system-protein	unknown	unknown	gnl\|CDD\|182160
NZ_CP023386.1\|WP_001182352.1\|2274399_2275611_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182924
NZ_CP023386.1\|WP_000212668.1\|2268515_2268821_-\|monooxygenase	unknown	unknown	gnl\|CDD\|182975
NZ_CP023386.1\|WP_000534309.1\|2269394_2270651_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|137602
NZ_CP023386.1\|WP_000098896.1\|2272960_2274109_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282

Protein	Function_ID	Function_description	E-value
NZ_CP023386.1\|WP_000701039.1\|2278231_2279401_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	9.34269e-98
NZ_CP023386.1\|WP_000007283.1\|2279546_2280128_-\|superoxide-dismutase-[Fe]	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	3.77321e-138
NZ_CP023386.1\|WP_000587586.1\|2265961_2266774_+\|hypothetical-protein	gnl\|CDD\|182159	PRK09946, PRK09946, hypothetical protein; Provisional.	1.63281e-174
NZ_CP023386.1\|WP_001295403.1\|2258397_2259810_-\|pyruvate-kinase-PykF	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0
NZ_CP023386.1\|WP_000716944.1\|2266779_2268390_-\|FAD-NAD(P)-binding-protein	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
NZ_CP023386.1\|WP_001602609.1\|2264507_2265176_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	2.94194e-76
NZ_CP023386.1\|WP_001174939.1\|2270691_2272065_-\|multidrug-efflux-MATE-transporter-MdtK	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
NZ_CP023386.1\|WP_000528342.1\|2260366_2260576_+\|fumarate-hydratase-FumD	gnl\|CDD\|182359	PRK10292, PRK10292, fumarate hydratase FumD.	2.11502e-34
NZ_CP023386.1\|WP_000493947.1\|2272279_2272921_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	2.24506e-123
NZ_CP023386.1\|WP_000269493.1\|2275723_2276656_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
NZ_CP023386.1\|WP_000190982.1\|2276652_2277678_-\|HTH-type-transcriptional-repressor-PurR	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
NZ_CP023386.1\|WP_001070227.1\|2261031_2261658_+\|ferredoxin-like-protein	gnl\|CDD\|182135	PRK09898, PRK09898, ferredoxin-like protein.	5.22783e-140
NZ_CP023386.1\|WP_001069968.1\|2265172_2265958_+\|thiosulfate-reductase-cytochrome-B-subunit	gnl\|CDD\|184968	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional.	2.0158e-162
NZ_CP023386.1\|WP_001273485.1\|2261678_2263781_+\|aldehyde-ferredoxin-oxidoreductase	gnl\|CDD\|236629	PRK09849, PRK09849, putative oxidoreductase; Provisional.	0
NZ_CP023386.1\|WP_000504325.1\|2263784_2264444_+\|YdhW-family-putative-oxidoreductase-system-protein	gnl\|CDD\|182160	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein.	5.66753e-120
NZ_CP023386.1\|WP_001182352.1\|2274399_2275611_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
NZ_CP023386.1\|WP_000212668.1\|2268515_2268821_-\|monooxygenase	gnl\|CDD\|182975	PRK11118, PRK11118, putative monooxygenase; Provisional.	5.59739e-64
NZ_CP023386.1\|WP_000534309.1\|2269394_2270651_+\|hypothetical-protein	gnl\|CDD\|137602	PRK09945, PRK09945, hypothetical protein; Provisional.	0
NZ_CP023386.1\|WP_000098896.1\|2272960_2274109_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0

>NZ_CP023386.1|WP_000212668.1|2268515_2268821_-|monooxygenase
MATLLQLHFAFNGPFGDAMVEQLEPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA
>NZ_CP023386.1|WP_000716944.1|2266779_2268390_-|FAD-NAD(P)-binding-protein
MKKIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEASHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVIFHRDNASEKLNITLMSRTGILPEADFYCPIPYEPLHIVTDQALNAEIQKGEEGLLDRVFRLIVEEIKFADPDWSQRIALESLNVDSFAQAWFAERKQRDPFDWAEKNLQEVERNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGFARVFIDNYAAIPSESIRRLLALREAGIIHILALGEDYEMEINESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFPGLREQLQKTGDEIPDVGEDYTLQQPEEIRGRVAFGALPWLMHDQPFVQGLTACAEIGEAMAQAVVKPASRARRRLSFDQM
>NZ_CP023386.1|WP_000587586.1|2265961_2266774_+|hypothetical-protein
MIITRADLREWRIGAVMYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGERPFCSQFARSDDHARIGCCEDNARIATAGYAAQIASMGYSVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRIANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANSGDNVHIIASGEDSTIVSTGVVDSIILGPGGSAALAYHDGERVRFAVAIEGENNIRAGVRYRLNEQHQFVEC
>NZ_CP023386.1|WP_001069968.1|2265172_2265958_+|thiosulfate-reductase-cytochrome-B-subunit
MNPSQHAEQFQSQLANYVPQFTPEFWPVWLIIAGLLLVGMWLVLGLHALFRARGVKKSATDHGEKIYLYSKAVRLWHWSNALLFVLLLASGLINHFALVGATAVKSLVALHEVCGFLLLACWLGFVLINAVGGNGHHYRIRRQGWLERAAKQTRFYLFGIMQGEEHPFPATTQSKFNPLQQVAYVGVMYGLLPLLLLTGLLCLYPQVVGDVFPGVRYWLLQAHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH
>NZ_CP023386.1|WP_001602609.1|2264507_2265176_+|4Fe-4S-dicluster-domain-containing-protein
MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGREDSPEIQAWLQENKYYQYQLPGAGKPHLYRRFGQHLIKKENV
>NZ_CP023386.1|WP_000504325.1|2263784_2264444_+|YdhW-family-putative-oxidoreductase-system-protein
MGEMNHQDELPLAEVSEIDEAKRQWLQGMRHPVDTVSEDITEPEPAEILAEFIRQHSAAGQLVARAVFLSPPYSVAEEELSVLLENIKQNGDYADIACMTGSQDDYYYSTQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEAAIAAMDVAPEYADIRQVESSTAVLYLFSERFMTYGKAYGLCEWFEVEQFQNP
>NZ_CP023386.1|WP_001273485.1|2261678_2263781_+|aldehyde-ferredoxin-oxidoreductase
MANGWTGNILRVNLTTGNIILEDSSKFKSFVGGMGFGYKIMYDEVPPGTKPFDEANKLVFATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQMKFAGYDVIIIEGKAKSPVWLNIKDDKVSLEKADFLWGKGTRATTEEICRLTSPETCVAAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKRLNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPPGNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPSTGGNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYSKGVFKRVLPAEEYAEIRWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWNLGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTVSPLKSRNYRGDLALEAKFFKAITGEDMTQEKLDLAAERIFTLHRAYTIKLMQTKDMRNEHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGCPTRETLQRLGLEDIAADLAAHNLLPA
>NZ_CP023386.1|WP_001070227.1|2261031_2261658_+|ferredoxin-like-protein
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQEEGCITVDHKRCIGCSACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV
>NZ_CP023386.1|WP_000528342.1|2260366_2260576_+|fumarate-hydratase-FumD
MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAMETVINALVK
>NZ_CP023386.1|WP_001295403.1|2258397_2259810_-|pyruvate-kinase-PykF
MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL
>NZ_CP023386.1|WP_000534309.1|2269394_2270651_+|hypothetical-protein
MGSDAKNLMSDGNVQIVKTGEVIGVTQLTEGELIVEAGGKAENTVVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDKGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPGGEASNCEINQGGVFMLAGKANDTLLAGGTMNNLGGEDSDTIVENGSTYRLGTDGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGADLQQSTITVQQGGVLILDGSTVKGDSVTFSVGNINLNGGKLWLITGAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITDASRQTLCNALKLQPDEDGIGATLQPA
>NZ_CP023386.1|WP_001174939.1|2270691_2272065_-|multidrug-efflux-MATE-transporter-MdtK
MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRLPSAIILQRAAR
>NZ_CP023386.1|WP_000493947.1|2272279_2272921_+|riboflavin-synthase
MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA
>NZ_CP023386.1|WP_000098896.1|2272960_2274109_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIAGARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKMAQERCEGLDVTILLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLNVDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR
>NZ_CP023386.1|WP_001182352.1|2274399_2275611_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLLWGPLSDRYGRKPVLLIGLTIFALGSLGMLWVENAATLLVLRFVQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQAIFATLFAITVVLILPIFWLKPTTKARNNSQDGLTFTDLLRSKIYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLVLFAVSVIATWAVGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAALQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEVDCQNHGNAEVAHSESH
>NZ_CP023386.1|WP_000269493.1|2275723_2276656_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRLVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALELENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLREPEETPATGD
>NZ_CP023386.1|WP_000190982.1|2276652_2277678_-|HTH-type-transcriptional-repressor-PurR
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>NZ_CP023386.1|WP_000102278.1|2277976_2278066_+|stress-response-protein-YnhF
MSTDLKFSLVTTIIVLGLIVAVGLTAALH
>NZ_CP023386.1|WP_000701039.1|2278231_2279401_+|MFS-transporter
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFFSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAATFAVVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPEAVCVANS
>NZ_CP023386.1|WP_000007283.1|2279546_2280128_-|superoxide-dismutase-[Fe]
MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA

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Crispr_ID: NZ_CP023386_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023386_3

4102548-4102680

Orphan

Consensus_repeat	Method
ATCACCAATATTGAAAA	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP023386_3

>merge|NZ_CP023386|3|4102548-4102680|PILER-CR
ATCACCAATATTGAAAATGTCACACGCAGATAAATCCAACTTTCAATATTGTTAAGTCCCTCACCAATATTGAAAACATGGCGTAGCAAAAAGAAATTTTCAATATTGCTTTATGGATCACCAATATTGAAAG

>NZ_CP023386|3|2|4102548-4102680|PILER-CR
ATCACCAATATTGAAAA	TGTCACACGCAGATAAATCCAACTTTCAATATTGTTAAGTCC
CTCACCAATATTGAAAA	CATGGCGTAGCAAAAAGAAATTTTCAATATTGCTTTATGG
ATCACCAATATTGAAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023386.1\|WP_000125566.1\|4094236_4094470_-\|antitoxin	unknown	unknown	gnl\|CDD\|227619
NZ_CP023386.1\|WP_000349954.1\|4105735_4106953_+\|L-carnitine-CoA-transferase	unknown	unknown	gnl\|CDD\|179589
NZ_CP023386.1\|WP_000692217.1\|4101686_4102457_-\|electron-transfer-flavoprotein-FixA	unknown	unknown	gnl\|CDD\|179569
NZ_CP023386.1\|WP_000203741.1\|4099109_4099397_-\|ferredoxin-like-protein-FixX	unknown	unknown	gnl\|CDD\|185346
NZ_CP023386.1\|WP_001126360.1\|4110844_4114063_-\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
NZ_CP023386.1\|WP_000597260.1\|4114080_4115229_-\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|237139
NZ_CP023386.1\|WP_001407186.1\|4109479_4110070_+\|carnitine-operon-protein-CaiE	unknown	unknown	gnl\|CDD\|184189
NZ_CP023386.1\|WP_001287745.1\|4099393_4100680_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182273
NZ_CP023386.1\|WP_000543579.1\|4115684_4116506_-\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|223366
NZ_CP023386.1\|WP_000787111.1\|4102929_4104444_+\|L-carnitine/gamma-butyrobetaine-antiport-BCCT-transporter	unknown	unknown	gnl\|CDD\|179568
NZ_CP023386.1\|WP_000333125.1\|4110188_4110584_-\|carnitine-metabolism-transcriptional-regulator-CaiF	unknown	unknown	gnl\|CDD\|183154
NZ_CP023386.1\|WP_000347117.1\|4104474_4105617_+\|crotonobetainyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|179566
NZ_CP023386.1\|WP_000600725.1\|4097081_4097612_-\|glutathione-regulated-potassium-efflux-system-oxidoreductase-KefF	unknown	unknown	gnl\|CDD\|234852
NZ_CP023386.1\|WP_001160961.1\|4093982_4094234_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376629
NZ_CP023386.1\|WP_000624375.1\|4094555_4095035_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NZ_CP023386.1\|WP_001183198.1\|4097719_4099051_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340874
NZ_CP023386.1\|WP_000004399.1\|4108688_4109474_+\|crotonobetainyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|179599
NZ_CP023386.1\|WP_001091521.1\|4100730_4101672_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|235120
NZ_CP023386.1\|WP_001309938.1\|4107026_4108580_+\|crotonobetaine/carnitine-CoA-ligase	unknown	unknown	gnl\|CDD\|181195
NZ_CP023386.1\|WP_000377114.1\|4095226_4097089_-\|glutathione-regulated-potassium-efflux-system-protein-KefC	unknown	unknown	gnl\|CDD\|235131

Protein	Function_ID	Function_description	E-value
NZ_CP023386.1\|WP_000125566.1\|4094236_4094470_-\|antitoxin	gnl\|CDD\|227619	COG5302, COG5302, Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only].	2.77856e-23
NZ_CP023386.1\|WP_000349954.1\|4105735_4106953_+\|L-carnitine-CoA-transferase	gnl\|CDD\|179589	PRK03525, PRK03525, L-carnitine CoA-transferase.	0
NZ_CP023386.1\|WP_000692217.1\|4101686_4102457_-\|electron-transfer-flavoprotein-FixA	gnl\|CDD\|179569	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed.	2.42827e-170
NZ_CP023386.1\|WP_000203741.1\|4099109_4099397_-\|ferredoxin-like-protein-FixX	gnl\|CDD\|185346	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional.	1.84173e-69
NZ_CP023386.1\|WP_001126360.1\|4110844_4114063_-\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NZ_CP023386.1\|WP_000597260.1\|4114080_4115229_-\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0
NZ_CP023386.1\|WP_001407186.1\|4109479_4110070_+\|carnitine-operon-protein-CaiE	gnl\|CDD\|184189	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional.	2.64853e-141
NZ_CP023386.1\|WP_001287745.1\|4099393_4100680_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|182273	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional.	0
NZ_CP023386.1\|WP_000543579.1\|4115684_4116506_-\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|223366	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism].	1.82894e-141
NZ_CP023386.1\|WP_000787111.1\|4102929_4104444_+\|L-carnitine/gamma-butyrobetaine-antiport-BCCT-transporter	gnl\|CDD\|179568	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter.	0
NZ_CP023386.1\|WP_000333125.1\|4110188_4110584_-\|carnitine-metabolism-transcriptional-regulator-CaiF	gnl\|CDD\|183154	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF.	1.42176e-74
NZ_CP023386.1\|WP_000347117.1\|4104474_4105617_+\|crotonobetainyl-CoA-dehydrogenase	gnl\|CDD\|179566	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated.	0
NZ_CP023386.1\|WP_000600725.1\|4097081_4097612_-\|glutathione-regulated-potassium-efflux-system-oxidoreductase-KefF	gnl\|CDD\|234852	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF.	2.99389e-133
NZ_CP023386.1\|WP_001160961.1\|4093982_4094234_-\|hypothetical-protein	gnl\|CDD\|376629	pfam01845, CcdB, CcdB protein.	2.70486e-25
NZ_CP023386.1\|WP_000624375.1\|4094555_4095035_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.07206e-127
NZ_CP023386.1\|WP_001183198.1\|4097719_4099051_-\|MFS-transporter	gnl\|CDD\|340874	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily. This family is composed of metazoan synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters including those that transport inorganic phosphate (Pht), aromatic compounds (PcaK and related proteins), proline/betaine (ProP), alpha-ketoglutarate (KgtP), citrate (CitA), shikimate (ShiA), and cis,cis-muconate (MucK), among others. SV2 is a transporter-like protein that serves as the receptor for botulinum neurotoxin A (BoNT/A), one of seven neurotoxins produced by the bacterium Clostridium botulinum. BoNT/A blocks neurotransmitter release by cleaving synaptosome-associated protein of 25 kD (SNAP-25) within presynaptic nerve terminals. Also included in this family is synaptic vesicle 2 (SV2)-related protein (SVOP) and similar proteins. SVOP is a transporter-like nucleotide binding protein that localizes to neurotransmitter-containing vesicles. The SV2-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.4298e-59
NZ_CP023386.1\|WP_000004399.1\|4108688_4109474_+\|crotonobetainyl-CoA-hydratase	gnl\|CDD\|179599	PRK03580, PRK03580, crotonobetainyl-CoA hydratase.	6.92249e-179
NZ_CP023386.1\|WP_001091521.1\|4100730_4101672_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|235120	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein.	0
NZ_CP023386.1\|WP_001309938.1\|4107026_4108580_+\|crotonobetaine/carnitine-CoA-ligase	gnl\|CDD\|181195	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated.	0
NZ_CP023386.1\|WP_000377114.1\|4095226_4097089_-\|glutathione-regulated-potassium-efflux-system-protein-KefC	gnl\|CDD\|235131	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional.	0

>NZ_CP023386.1|WP_000692217.1|4101686_4102457_-|electron-transfer-flavoprotein-FixA
MKIITCYKCVPDEQDIAVNNADGSLDFSKADAKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALTNAKGRKDVLSRGPDELIVVIDDQFEQALPQQTASVLAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAVNGVSKIISLTADTLTVERELEDETETLSIPLPAVVAVSTDINSPQIPSMKAILGAAKKPVQVWSAADIGFNAEAAWSEQQVAAPKQRERQRIVIEGDGEEQIAAFAENLRKVI
>NZ_CP023386.1|WP_001091521.1|4100730_4101672_-|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNTFSQVWVFSDTPSRLPELMNGAQALANQINTFVLNDADGARAIQLGANHVWKLNGKPDDRMIEDYAGVMADTIRQHGADGLVLLPNTRRGKLLAAKLGYRLKAAVSNDASTVSVQDGKATVKHMVYGGLAIGEERIATPYAVLTISSGTFDAAQPDASRTGETHTVEWQAPAVAITRTATQARQSNSVDLDKARLVVSVGRGIGSKDNIALAEQLCKAIGAELACSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQYADYGIVGDAVKILPALTAALAR
>NZ_CP023386.1|WP_001287745.1|4099393_4100680_-|FAD-dependent-oxidoreductase
MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFAESAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNSILAEKLGMAKRVKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGFLYTNENTLSLGLVCGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMNLGITIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHLESGPLRDMRMYQKLPAFLDNPRMFSGYPELAVGVARDLFTIDGSAPELMRKKILRHGKKVGFINLIKDGMKGVTVL
>NZ_CP023386.1|WP_000203741.1|4099109_4099397_-|ferredoxin-like-protein-FixX
MTSPVNVDVKLGVNKFNVDEEHPHIVVKADADKQALELLVKACPAGLYKKQDDGSVRFDYAGCLECGTCRILGLGSALEQWEYPRGTFGVEFRYG
>NZ_CP023386.1|WP_001183198.1|4097719_4099051_-|MFS-transporter
MQPSRNFDDLKFSSIHRRILLWGSGGPFLDGYVLVMIGVALEQLTPALKLDADWIGLLGAGTLAGLFVGTSLFGYISDKVGRRKMFLIDIIAIGVISVATMFVSSPVELLVMRVLIGIVIGADYPIATSMITEFSSTRQRAFSISFIAAMWYVGATCADLVGYWLYDVEGGWRWMLGSAAIPCLLILIGRFELPESPRWLLRKGRVKECEEMMIKLFGEPVAFDEEQPQQTRFRDLFNRRHFPFVLFVAAIWTCQVIPMFAIYTFGPQIVGLLGLGVGKNAALGNVVISLFFMLGCIPPMLWLNTAGRRPLLIGSFAMMTLALAVLGLIPDMGIWLVVMAFAVYAFFSGGPGNLQWLYPNELFPTDIRASAVGVIMSLSRIGTIVSTWALPIFINNYGISNTMLMGAGISLFGLLISVAFAPETRGMSLAQTSNMTIRGQRMG
>NZ_CP023386.1|WP_000600725.1|4097081_4097612_-|glutathione-regulated-potassium-efflux-system-oxidoreductase-KefF
MILIIYAHPYPHHSHANKRMLEQARTLEGVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQHPMQWYSIPPLLKLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATAIYCGLNWLPPFAMHCTFICDDETLEGQARHYKQRLLEWQEAHHG
>NZ_CP023386.1|WP_000377114.1|4095226_4097089_-|glutathione-regulated-potassium-efflux-system-protein-KefC
MDSHTLIQALIYLGSAALIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDAESILHFAEIGVVLMLFIIGLELDPQRLWKLRAAVFGGGALQMVICGGLLGLFCMLLGLRWQVAELIGMTLALSSTAIAMQAMNERNLMVTQMGRSAFAVLLFQDIAAIPLVAMIPLLAASSASTTMGAFALSALKVAGALVLVVLLGRYVTRPALRFVARSGLREVFSAVALFLVFGFGLLLEEVGLSMAMGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIGVGMSIDFGTLIENPLRIVILLLGFLIIKIAMLWLIARPLQVPNKQRRWFAVLLGQGSEFAFVVFGAAQMANVLEPEWAKSLTLAVALSMAATPILLVILNRLEQSSTEEAREADEIDEEQPRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNLQLTEMVKEHFPHLQIIARARDVDHYIRLRQAGVEKPERETFEGALKTGRLALESLGLGPYEARERADVFRRFNIQMVEEMAMVENDTKARAAVYKRTSAMLSEIITEDREHLSLIQRHGWQGTEEGKHTGNMADEPETKPSS
>NZ_CP023386.1|WP_000624375.1|4094555_4095035_-|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVIMGRHTWESIGRPLPGRKNIILSSQPGTDDRVTWVKSVDEAIAACGDVPEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFEILERR
>NZ_CP023386.1|WP_000125566.1|4094236_4094470_-|antitoxin
MTAKRTTQSVTVTVDRELVNRARDAGLNMSATLTVALNAELKKHAATRWREENAEAIAALNQLADETGCFSDEYRSF
>NZ_CP023386.1|WP_001160961.1|4093982_4094234_-|hypothetical-protein
MQFTVYRSRGRNAAFPFVIDVTSDIIGEINRRIVIPLTPIERFIRIRPPERLNTILLLVDGKEYVLMTHETATVPVNALGTKF
>NZ_CP023386.1|WP_000787111.1|4102929_4104444_+|L-carnitine/gamma-butyrobetaine-antiport-BCCT-transporter
MKNEKRKTGIEPKVFFPPLIIVGILCWLTVRDLDAANVVINAVFSYVTNVWGWAFEWYMVVMLFGWFWLVFGPYAKKRLGNEPPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISTPPFGLEPNSTGAKELGLAYSLFHWGPLPWATYSFLSVAFAYFFFVRKMEVIRPSSTLVPLVGEKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVTECMQWLFGIPHTLQLDAIIITCWIILNAICVACGLQKGVRIASDVRSYLSFLMLGWVFIVSGASFIMNYFTDSVGMLLMYLPRMLFYTDPIAKGGFPQGWTVFYWAWWVIYAIQMSIFLARISRGRTVRELCFGMVMGLTASTWILWTVLGSNTLLLMDKNIINIPNLIEQYGVARAIIETWAALPLSTATMWGFFILCFIATVTLVNACSYTLAMSTCREVRDGEEPPLLVRIGWSILVGIIGIVLLALGGLKPIQTAIIAGGCPLFFVNIMVTLSFIKDAKQNWKD
>NZ_CP023386.1|WP_000347117.1|4104474_4105617_+|crotonobetainyl-CoA-dehydrogenase
MDFNLNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGRLGAPTYVLYQLPGGFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKIYLNGSKCFITSSAYTPYIVVMARDGASPDKPVYTEWFVDMSKPGIKVTKLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQYR
>NZ_CP023386.1|WP_000349954.1|4105735_4106953_+|L-carnitine-CoA-transferase
MDHLPMPKFGPLAGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALSLNIFKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGFGQYGTEEYTNLPAYNTIAQAFSGYLIQNGDVDQPMPAFPYTADYFSGLTATTAALAALHKVRETGKGESIDIAMYEVMLRMGQYFMMDYFNGGEMCPRMTKGKDPYYAGCGLYKCADGYIVMELVGITQIEECFKDIGLAHLLGTSEIPEGTQLIHRIECPYGPLVEEKLDAWLAAHTIAEVKERFAELNIACAKVLTVPELESNPQYVARESITQWQTMDGRTCKGPNIMPKFKNNPGKIWRGMPSHGMDTAAILKNIGYSENDIQELVSKGLAKVED
>NZ_CP023386.1|WP_001309938.1|4107026_4108580_+|crotonobetaine/carnitine-CoA-ligase
MDIIGGQHLRQMWDDLADVYGHKTALICESSSGVVNRYSYLELNQEINRTANLFYTLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQACLLVTSAQFYPMYQQIQQEDASQLRHICLIDMALPADDGVSSFTQLKNQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLVEKYSARAFWGQVQKYRATITECIPMMIRTLMVQPPSANDRQHCLREVMFYLNLSEQEKDAFCERFSVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRAGFCYEAEIRDDHNRPLPAGELGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIAAHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK
>NZ_CP023386.1|WP_000004399.1|4108688_4109474_+|crotonobetainyl-CoA-hydratase
MSESLHLTRNGSILEITLDRPKANAIDAKTSFEMGEVFLNFRDDPQLRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFNLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKILPPAIVNEMVMTGRRMGAEEALRWGVVNRVVSQAELMDNARELAQQLVNSAPLAIAALKEIYRTTSEMPVEEAYRYIRSGVLKHYPSVLHSEDAIEGPLAFAEKRDPVWKGR
>NZ_CP023386.1|WP_001407186.1|4109479_4110070_+|carnitine-operon-protein-CaiE
MSYYAFEGLIPIVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKVGFRGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEENRPRLQGTTDVMPKR
>NZ_CP023386.1|WP_000333125.1|4110188_4110584_-|carnitine-metabolism-transcriptional-regulator-CaiF
MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVKMIPNKLEGRGCQCQRLVKVVDIDEQIYARLRNNSREKLVGVRKTPRIPAVPLTELNREQKWQMMLSKSMRR
>NZ_CP023386.1|WP_001126360.1|4110844_4114063_-|carbamoyl-phosphate-synthase-large-subunit
MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEALTKIRRELKDAGAERIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVGITGLNADFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEECESNPSDRDKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKTLAEQGVTKEVIPPYYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRVIRRSALQYKVHYDTTLNGGFATAMALNADATEKVISVQEMHAQIK
>NZ_CP023386.1|WP_000597260.1|4114080_4115229_-|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit
MIKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGSWTLTGGLPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEASPGPHDAAPLFDHFIELIEQYRKTAK
>NZ_CP023386.1|WP_000543579.1|4115684_4116506_-|4-hydroxy-tetrahydrodipicolinate-reductase
MHDANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAIKDDFDVFIDFTRPEGTLKHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAADIAIVFAANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIAHALDKDLKDCAVYSREGHTGERVPGTIGFATVRAGDIVGEHTAMFADIGERLEITHKASSRMTFANGAVRSALWLSGKESGLFDMRDVLDLNKL

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Crispr_ID: NZ_CP023386_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023386_4

4333575-4333724

Orphan

Consensus_repeat	Method
TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP023386_4

>merge|NZ_CP023386|4|4333575-4333724|CRISPRCasFinder
TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAATGCTGTTATTGTCGGATGCGGCATGAACGCCTTATCCGACCTACACAGCACCGAACTCGTAGGCCTGATAAGACGCG

>NZ_CP023386|4|3|4333575-4333724|CRISPRCasFinder
TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	CAAGCGTCGCATCAGGCAATGCTGTTATTGTCGGATGCGGCA
TGAACGCCTTATCCGACCTACACAGCACCGAACTCGTAGGCCTGATAAGACGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023386.1\|WP_000256681.1\|4343136_4343730_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP023386.1\|WP_000416387.1\|4334334_4337190_+\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
NZ_CP023386.1\|WP_000584114.1\|4330659_4331760_-\|LPS-export-ABC-transporter-permease-LptF	unknown	unknown	gnl\|CDD\|185075
NZ_CP023386.1\|WP_001309159.1\|4326838_4327837_+\|DNA-binding-transcriptional-regulator-IdnR	unknown	unknown	gnl\|CDD\|380489
NZ_CP023386.1\|WP_001059412.1\|4338634_4339138_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP023386.1\|WP_000036448.1\|4340821_4342417_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023386.1\|WP_000998695.1\|4324625_4325390_+\|gluconate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|181225
NZ_CP023386.1\|WP_001294573.1\|4327914_4329417_+\|DUF853-domain-containing-protein	unknown	unknown	gnl\|CDD\|283518
NZ_CP023386.1\|WP_000786399.1\|4333891_4334335_+\|DNA-polymerase-III-subunit-chi	unknown	unknown	gnl\|CDD\|235581
NZ_CP023386.1\|WP_001318460.1\|4321767_4322787_+\|NADPH-dependent-aldehyde-reductase-Ahr	unknown	unknown	gnl\|CDD\|176186
NZ_CP023386.1\|WP_001197411.1\|4323570_4324602_+\|L-idonate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|182130
NZ_CP023386.1\|WP_000397144.1\|4332026_4333538_+\|leucyl-aminopeptidase	unknown	unknown	gnl\|CDD\|234863
NZ_CP023386.1\|WP_000012907.1\|4339761_4340766_+\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|179587
NZ_CP023386.1\|WP_001128347.1\|4325452_4326772_+\|gnt-II-system-L-idonate-transporter	unknown	unknown	gnl\|CDD\|129873
NZ_CP023386.1\|WP_000500687.1\|4343800_4344514_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|183714
NZ_CP023386.1\|WP_001295681.1\|4329577_4330660_-\|LPS-export-ABC-transporter-permease-LptG	unknown	unknown	gnl\|CDD\|237900
NZ_CP023386.1\|WP_001326836.1\|4342539_4342992_-\|YhcH/YjgK/YiaL-family-protein	unknown	unknown	gnl\|CDD\|225345
NZ_CP023386.1\|WP_000002953.1\|4339183_4339600_-\|ribonuclease-E-inhibitor-RraB	unknown	unknown	gnl\|CDD\|236876
NZ_CP023386.1\|WP_000896738.1\|4322790_4323354_-\|gluconokinase	unknown	unknown	gnl\|CDD\|182097
NZ_CP023386.1\|WP_000079655.1\|4337245_4338442_-\|DUF898-domain-containing-protein	unknown	unknown	gnl\|CDD\|226719

Protein	Function_ID	Function_description	E-value
NZ_CP023386.1\|WP_000256681.1\|4343136_4343730_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.07846e-09
NZ_CP023386.1\|WP_000416387.1\|4334334_4337190_+\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
NZ_CP023386.1\|WP_000584114.1\|4330659_4331760_-\|LPS-export-ABC-transporter-permease-LptF	gnl\|CDD\|185075	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional.	0
NZ_CP023386.1\|WP_001309159.1\|4326838_4327837_+\|DNA-binding-transcriptional-regulator-IdnR	gnl\|CDD\|380489	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding, which in turn changes the DNA binding affinity of the repressor.	1.4437e-109
NZ_CP023386.1\|WP_001059412.1\|4338634_4339138_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	7.73712e-19
NZ_CP023386.1\|WP_000998695.1\|4324625_4325390_+\|gluconate-5-dehydrogenase	gnl\|CDD\|181225	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional.	0
NZ_CP023386.1\|WP_001294573.1\|4327914_4329417_+\|DUF853-domain-containing-protein	gnl\|CDD\|283518	pfam05872, DUF853, Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. BMEI1370 is thought to be an ATPase.	0
NZ_CP023386.1\|WP_000786399.1\|4333891_4334335_+\|DNA-polymerase-III-subunit-chi	gnl\|CDD\|235581	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated.	5.53743e-66
NZ_CP023386.1\|WP_001318460.1\|4321767_4322787_+\|NADPH-dependent-aldehyde-reductase-Ahr	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	1.21683e-169
NZ_CP023386.1\|WP_001197411.1\|4323570_4324602_+\|L-idonate-5-dehydrogenase	gnl\|CDD\|182130	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional.	0
NZ_CP023386.1\|WP_000397144.1\|4332026_4333538_+\|leucyl-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
NZ_CP023386.1\|WP_000012907.1\|4339761_4340766_+\|ornithine-carbamoyltransferase	gnl\|CDD\|179587	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional.	0
NZ_CP023386.1\|WP_001128347.1\|4325452_4326772_+\|gnt-II-system-L-idonate-transporter	gnl\|CDD\|129873	TIGR00791, Gluconate_permease, gluconate transporter. This family includes known gluconate transporters of E. coli and Bacillus species as well as an idonate transporter from E. coli. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
NZ_CP023386.1\|WP_000500687.1\|4343800_4344514_+\|SDR-family-oxidoreductase	gnl\|CDD\|183714	PRK12742, PRK12742, SDR family oxidoreductase.	5.2218e-149
NZ_CP023386.1\|WP_001295681.1\|4329577_4330660_-\|LPS-export-ABC-transporter-permease-LptG	gnl\|CDD\|237900	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional.	0
NZ_CP023386.1\|WP_001326836.1\|4342539_4342992_-\|YhcH/YjgK/YiaL-family-protein	gnl\|CDD\|225345	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism].	3.64234e-69
NZ_CP023386.1\|WP_000002953.1\|4339183_4339600_-\|ribonuclease-E-inhibitor-RraB	gnl\|CDD\|236876	PRK11191, PRK11191, ribonuclease E inhibitor RraB.	4.50628e-69
NZ_CP023386.1\|WP_000896738.1\|4322790_4323354_-\|gluconokinase	gnl\|CDD\|182097	PRK09825, idnK, gluconokinase.	1.3617e-126
NZ_CP023386.1\|WP_000079655.1\|4337245_4338442_-\|DUF898-domain-containing-protein	gnl\|CDD\|226719	COG4269, COG4269, Predicted membrane protein [Function unknown].	4.28094e-150

>NZ_CP023386.1|WP_000397144.1|4332026_4333538_+|leucyl-aminopeptidase
MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTLLLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFNVPTRRELTSGERAIQHGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFEPEAVIDVATLTGACVIALGHHITGLMANHNPLAHELIAASEQSGDRAWRLPLGDEYQEQLESNFADMANIGGRPGGAITAGCFLSRFTRKYNWAHLDIAGTAWRSGKAKGATGRPVALLAQFLLNRAGFNGEE
>NZ_CP023386.1|WP_000584114.1|4330659_4331760_-|LPS-export-ABC-transporter-permease-LptF
MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLWDTVPVRRLRASFSRKGAV
>NZ_CP023386.1|WP_001295681.1|4329577_4330660_-|LPS-export-ABC-transporter-permease-LptG
MQPFGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDPDALSISGLHNYVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRKS
>NZ_CP023386.1|WP_001294573.1|4327914_4329417_+|DUF853-domain-containing-protein
MSEPLLIARTPDTELFLLPGMANRHGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVKGDLTGVAQAGTVSEKLLARLKNIGVNDWQPHANPVVVWDIFGEKGHPVRATVSDLGPLLLARLLNLNDVQSGVLNIIFRIADDQGLLLLDFKDLRAITQYIGDNAKSFQNQYGNISSASVGAIQRGLLSLEQQGAAHFFGEPMLDIKDWMRTDANGKGVINILSAEKLYQMPKLYAASLLWMLSELYEQLPEAGDLEKPKLVFFFDEAHLLFNDAPQVLLDKIEQVIRLIRSKGVGVWFVSQNPSDIPDNVLGQLGNRVQHALRAFTPKDQKAVKAAAQTMRANPAFDTEKAIQELGTGEALISFLDAKGSPSVVERAMVIAPCSRMGPVTEDERNGLINHSPVYGKYEDEVDRESAYEMLQKGFQASTEQQNNPPAKGKEVAVDDGILGGLKDILFGTTGPRGGKKDGVVQTMAKSAARQVTNQIVRGMLGSLLGGRRR
>NZ_CP023386.1|WP_001309159.1|4326838_4327837_+|DNA-binding-transcriptional-regulator-IdnR
MRNHRISLQDIATLAGVTKMTVSRYIRSPKKVAKETGERIAKIMEEINYIPNRAPGMLLNAQSYTLGILIPSFQNQLFADILAGIESVTSEHNYQTLIANYNYDRDSEEESVINLLSYNIDGIILSEKYHTIRTVKFLRSATIPVVELMDVQGERLDMEVGFDNRQAAFDMVCTMLEKRVRHKILYLGSKDDTRDEQRYQGYCDAMMLHNLSPLRMNPRAISSIHLGMQLMRDALSANPDLDGVFCTNDDIAMGALLLCRERNLAVPEQISIAGFHGLEIGRQMIPSLASVITPRFDIGRMAAQMLLSKIKNNDHNHNTVDLGYQIYHGNTL
>NZ_CP023386.1|WP_001128347.1|4325452_4326772_+|gnt-II-system-L-idonate-transporter
MPLIIIAAGVALLLILMIVFKVNGFIALVLVAAVVGFAEGMDAQAVLHSIQNGIGSTLGGLAMILGFGAMLGKLISDTGAAQRIATTLIATFGKKRVQWALVITGLVVGLAMFFEVGFVLLLPLVFTIVASSGLPLLYVGVPMVAALSVTHCFLPPHPGPTAIATIFEANLGTTLLYGFIITIPTVIVAGPLFSKLLTRFEKAPPEGLFNPHLFSEEEMPSFWNSIFAAVIPVILMAIAAVCEITLPKTNTVRLFFEFVGNPAVALFIAIVIAIFTLGRRNGRTIEQIMDIIGDSIGAIAMIVFIIAGGGAFKQVLVDSGVGHYISHLMTGTTLSPLLMCWTVAALLRIALGSATVAAITTAGVVLPIINVTHADPALMVLATGAGSVIASHVNDPGFWLFKGYFNLTVGETLRTWTVMETLISIMGLLGVLAINAVLH
>NZ_CP023386.1|WP_000998695.1|4324625_4325390_+|gluconate-5-dehydrogenase
MNDLFSLAGKNILITGSAQGIGFLLATGLGKYGAQIIINDITAERAELAVEKLHQEGIQAVAAPFNVTHKHEIDAAVEHIEKDIGPIDVLVNNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVTRHMVERKAGKVINICSMQSELGRDTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVEDEAFTAWLCKRTPAARWGDPQELIGAAVFLSSKASDFVNGHLLFVDGGMLVAV
>NZ_CP023386.1|WP_001197411.1|4323570_4324602_+|L-idonate-5-dehydrogenase
MQVKTQSCVVAGKKTVAVTEQTIDWNNNGTLVQITRGGICGSDLHYYQEGKVGNFMIKAPMVLGHEVIGKVIHSDSSELHEGQTVAINPSKPCGHCKYCIEHNENQCTDMRFFGSAMYFPHVDGGFTRYKMVETSQCVPYPAKADEKVMAFAEPLAVAIHAAHQAGELQGKRVFISGVGPIGCLIVSAVKTLGAAEIVCADVSPRSLSLGKEMGADVLVNPQNDDMDHWKAEKGYFDVSFEVSGHPSSVNTCLEVTRARGVMVQVGMGGAMAEFPMMTLIGKEISLRGSFRFTSEFNTAVSWLANGVINPLPLLSAEYPFTDLEEALRFAGDKTQAAKVQLVF
>NZ_CP023386.1|WP_000896738.1|4322790_4323354_-|gluconokinase
MAGESFILMGVSGSGKTLIGSKVAALLSAKFIDGDDLHPAKNIDKMSQGIPLSDEDRLPWLERLNDASYSLYKKNETGFIVCSSLKKQYRDILRKGSPHVHFLWLDGDYETILARMQRRAGHFMPVALLKSQFEALERPQADEQDIVRIDINHDIANVTEQCRQAVLAIRQNRICAKEGSASDQRCE
>NZ_CP023386.1|WP_001318460.1|4321767_4322787_+|NADPH-dependent-aldehyde-reductase-Ahr
MSMIKSYAAKEAGGELEVYEYDPGELRPQDVEVQVDYCGICHSDLSMIDNEWGFSQYPLVAGHEVIGRVVALGSAAQDKGLQVGQRVGIGWTARSCGHCDACISGNQINCEQGAVPTIMNRGGFAEKLRADWQWVIPLPENIDIESAGPLLCGGITVFKPLLMHHITATSRVGVIGIGGLGHIAIKLLHAMGCEVTAFSSNPAKEQEVLAMGADKVVNSRDPQALKALAGQFDLIINTVNVSLDWQPYFEALTYGGNFHTVGAVLTPLSVPAFTLIAGDRSVSGSATGTPYELRKLMRFAARSKVAPTTELFPMSKINDAIQHVRDGKARYRVVLKADY
>NZ_CP023386.1|WP_000786399.1|4333891_4334335_+|DNA-polymerase-III-subunit-chi
MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGPRGGAPVEIAWPQKRSSSPRDILISLRTSFADFATAFTEVVDFVPYEDSLKQLARERYKAYRVAGFNLNTATWK
>NZ_CP023386.1|WP_000416387.1|4334334_4337190_+|valine--tRNA-ligase
MEKTYNPQDIEQPLYEHWEKQGYFKPNGDESQESFCIMIPPPNVTGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKIAAEEGKTRHDYGREAFIDKIWEWKAESGGTITRQMRRLGNSVDWERERFTMDEGLSNAVKEVFVRLYKEDLIYRGKRLVNWDPKLRTAISDLEVENRESKGSMWHIRYPLADGAKTADGKDYLVVATTRPETLLGDTGVAVNPEDPRYKDLIGKYVILPLVNRRIPIVGDEHADMEKGTGCVKITPAHDFNDYEVGKRHALPMINILTFDGDIRESAQVFDTKGNESDVYSSEIPAEFQKLERFAARKAVVAAVDALGLLEEIKPHDLTVPYGDRGGVVIEPMLTDQWYVRADVLAKPAVEAVENGDIQFVPKQYENMYFSWMRDIQDWCISRQLWWGHRIPAWYDEAGNVYVGRNEDEVRKENNLGADVALRQDEDVLDTWFSSALWTFSTLGWPENTDALRQFHPTSVMVSGFDIIFFWIARMIMMTMHFIKDENGKPQVPFHTVYMTGLIRDDEGQKMSKSKGNVIDPLDMVDGISLPELLEKRTGNMMQPQLADKIRKRTEKQFPNGIEPHGTDALRFTLAALASTGRDINWDMKRLEGYRNFCNKLWNASRFVLMNTEGQDCGFNGGEMTLSLADRWILAEFNQTIKAYREALDSFRFDIAAGILYEFTWNQFCDWYLELTKPVMNGGTEAELRGTRHTLVTVLEGLLRLAHPIIPFITETIWQRVKVLCGITADTIMLQPFPQYDASQVDEAALADTEWLKQAIVAVRNIRAEMNIAPGKPLELLLRGCSADAERRVNENRGFLQTLARLESITVLPADNKGPVSVTKIIDGAELLIPMAGLINKEDELARLAKEVAKIEGEISRIENKLANEGFVARAPEAVIAKEREKLEGYAEAKAKLIEQQAVIAAL
>NZ_CP023386.1|WP_000079655.1|4337245_4338442_-|DUF898-domain-containing-protein
MAQVINEMDVPSHSFVFHGTGERYFLICVVNVLLTIITLGIYLPWALMKCKRYLYANMEVNGQRFSYGITGGNVFVSCLVFVFFYFAILMTVSADMPLVGCVLTLSLLVLLIFMAAKGLRYQALMTSLNGVRFSFNCSLKGFWWVTFFLPILMAIGMGAVFFISTKMLHANSSSSVIISVVLMAIVGIVSIGIFNGTLYSLVMSFLWSNTSFGIHRFKVKLDTTYCIKYAILAFLALLPFLAVAGYIIFDQILNAYDSSVYANDDIENLQQFMEMQRKMIIAQLIYYFGIAVSTSYLTVSLRNHFMSNLSLNDGRIRFRSTLTYHGMLYRMCALVVISGITGGLAYPLLKIWMIDWQAKNTYLLGDLDDLPLINKEEQPDKGFLARISRGIMPSLPFL
>NZ_CP023386.1|WP_001059412.1|4338634_4339138_+|GNAT-family-N-acetyltransferase
MNNIAPQSPVMRRLTQQDNPAIARVIRQVSAEYGLTADKGYTVADPNLDELYQVYSQPGHAYWVVEFDGEVVGGGGIAPLAGSESDICELQKMYFLPAIRGKGLAKKLALMAMEQAREMGFKRCYLETTAFLKEAIALYEHLGFEHIDYALGCTGHVDCEVRMLREL
>NZ_CP023386.1|WP_000002953.1|4339183_4339600_-|ribonuclease-E-inhibitor-RraB
MANPEQLEEQREETRLIIEELLEDGSDPDALYTIEHHLSADDLETLEKAAVEAFKLGYEVTDPEELEVEDGDIVICCDILSECALNADLIDAQVEQLMTLAEKFDVEYDGWGTYFEDPNGEDGDDEDFVDEDDDGVRH
>NZ_CP023386.1|WP_000012907.1|4339761_4340766_+|ornithine-carbamoyltransferase
MSGFYHKHFLKLLDFTPAELNSLLQLAAKLKADKKSGKEEAKLTGKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDVWVSMGEAKEKWAERIALLRDYQVNSKMMQLTGNPEVKFLHCLPAFHDDQTTLGKKMAEEFGLHGGMEVTDEVFESAASIVFDQAENRMHTIKAVMVATLSK
>NZ_CP023386.1|WP_000036448.1|4340821_4342417_-|hypothetical-protein
MSKISDLNYSQHITLADNFKQKSEVLNTWRVGMNNFARNAEGQDNTRNILDPKTFLEFLVKIFTLGYVDFSNRSNEAGRNMMAHIESSSYIKNNDGSEIMKFVMNNPEGERADLSKVEIEITLSTITTMGTRQGHTAIIFQQPDGSTNRYEGKSFERKDESSLHLITNKVLACYQREANKEVALLLNNHQLNWKDAIDYNELLEKPLASTLEKIKKEHLLLMPHVCDDTIPYLLGEGGILEEINGLKTLHDTKIDSGTEGNDEINNIKINLSNILIDSLDDAKINLEKVIDSMLETFFKLPYINDVKILEWCFNQSMQYSDDTTKIKHARSVIDHIDFNCDQSKIAETLFFNLNKEPYKNSPELQELIWEKLVVYVNDFNLSNQEKSRLILRLFDDVKLVFDKVPLSILVNDIFLKDFFMKQPDFAKWYFYQLLKSYEGEQMYLNELGYVYGDEEKTKEIVNKLPGYVVKIFEEKIDNELKIRTRMMEILRDEQINIYEYINEKQLEKLNPQGNLRIAIEKFGWNNKPITA
>NZ_CP023386.1|WP_001326836.1|4342539_4342992_-|YhcH/YjgK/YiaL-family-protein
MIIGNIHNLQPWLPQELRQAIEHIKAHVTPETPKGKHDIEGNRLFYLISEDMTEPYEARRAEYHARYLDIQIVLRGQEGMTFSTQPAGTPDTDWLADKDIAFLPEGVDEKTVILNEGDFVVFYPGEVHKPLCAVGAPAQVRKAVVKMLMA
>NZ_CP023386.1|WP_000256681.1|4343136_4343730_-|TetR/AcrR-family-transcriptional-regulator
MVTKKQSRVPGRPRRFAPEQAVSAAKVLFHQKGFDAVSVAEVTDYLGINPPSLYAAFGSKVGLFSRVLNEYVGTEAIPLADILRDDRPVGECLVEVLKEAARRYSQNGGCAGCMVLEGIHSHDPQARDIAVQYYHAAETTIYDYIARRHPQSAQCVTDFMSTVMSGLSAKAREGHSIEQLCATAALAGEAIKTILKE
>NZ_CP023386.1|WP_000500687.1|4343800_4344514_+|SDR-family-oxidoreductase
MGAFTGKTVLILGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAEHLAQETGATAVFTDSADRDAVIDVVRKSGALDILVVNAGIGVFGDALELNADDIDRLFKINIHAPYHASVEAARQMPEGGRILIIGSVNGDRMPVAGMAAYAASKSALQGMARGLARDFGPRGITINVVQPGPIDTDANPANGPMRDMLHSLMAIKRHGQPEEVAGMVAWLAGPEASFVTGAMHTIDGAFGA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP023386_3	3.1\|4102565\|42\|NZ_CP023386\|PILER-CR	4102565-4102606	42	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	141085-141126	1	0.976
NZ_CP023386_3	3.2\|4102624\|40\|NZ_CP023386\|PILER-CR	4102624-4102663	40	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	141028-141067	1	0.975
NZ_CP023386_2	2.1\|2268999\|38\|NZ_CP023386\|CRISPRCasFinder	2268999-2269036	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
NZ_CP023386_1	1.2\|1104304\|32\|NZ_CP023386\|PILER-CR,CRISPRCasFinder,CRT	1104304-1104335	32	NZ_CP020865	Paenibacillus sp. Cedars plasmid unnamed2, complete sequence	50456-50487	8	0.75

1. spacer 3.1|4102565|42|NZ_CP023386|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 1, identity: 0.976

tgtcacacgcagataaatccaactttcaatattgttaagtcc	CRISPR spacer
tgtcacacgcagataaatccaactttcaatattgttaagttc	Protospacer
****************************************.*

2. spacer 3.2|4102624|40|NZ_CP023386|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 1, identity: 0.975

catggcgtagcaaaaagaaattttcaatattgctttatgg	CRISPR spacer
catggcgtagaaaaaagaaattttcaatattgctttatgg	Protospacer
********** *****************************

3. spacer 2.1|2268999|38|NZ_CP023386|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

4. spacer 1.2|1104304|32|NZ_CP023386|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020865 (Paenibacillus sp. Cedars plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

aatacgca---ttaaaatgtttgcaagccgcaaac	CRISPR spacer
---ttgcagggtttaaatgtttgcaagccggaaaa	Protospacer
    .***   ** **************** ***

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1137142 : 1144282

Escherichia_phage(83.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001278992.1\|1137142_1137781_-	aldolase	A0A077SK32	Escherichia_phage	1.8e-82	74.5
WP_000590400.1\|1137777_1139040_-	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	3.7e-135	61.2
WP_000847985.1\|1139036_1139945_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	3.0e-118	76.9
WP_001295181.1\|1140140_1140908_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	2.5e-70	56.7
WP_001141344.1\|1140958_1141615_-	protein-serine/threonine phosphatase	A0A077SLQ6	Escherichia_phage	3.9e-51	47.0
WP_001272916.1\|1141720_1144282_-	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	1.6e-31	20.8

DBSCAN-SWA_2

1181047 : 1296191

115

Escherichia_phage(20.75%)

terminase,portal,tail,tRNA,plate,capsid,head,lysis,integrase

attL 1223156:1223171|attR 1275267:1275282

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000047169.1\|1181047_1183678_+\|tRNA	alanine--tRNA ligase	A0A2K9L1X7	Tupanvirus	5.5e-80	38.6
WP_000906486.1\|1183912_1184098_+	carbon storage regulator CsrA	A0A2I7RT00	Vibrio_phage	4.9e-12	66.7
WP_000273309.1\|1185388_1185955_+	fructose-1-phosphate/6-phosphogluconate phosphatase	NA	NA	NA	NA
WP_001287455.1\|1185951_1186380_+	DedA family protein	NA	NA	NA	NA
WP_000611804.1\|1186452_1188009_+	glutamate--cysteine ligase	NA	NA	NA	NA
WP_001130211.1\|1188158_1188674_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA
WP_001295176.1\|1188737_1190276_-	multidrug efflux MFS transporter permease subunit EmrB	NA	NA	NA	NA
WP_001295175.1\|1190292_1191465_-	multidrug efflux MFS transporter periplasmic adaptor subunit EmrA	NA	NA	NA	NA
WP_000378442.1\|1191591_1192122_-	multidrug efflux transporter EmrAB transcriptional repressor EmrR	NA	NA	NA	NA
WP_000119745.1\|1192212_1192548_-	L-valine transporter subunit YgaH	NA	NA	NA	NA
WP_000445658.1\|1192537_1193275_-	AzlC family ABC transporter permease	NA	NA	NA	NA
WP_000169334.1\|1193398_1194583_-	MFS transporter	NA	NA	NA	NA
WP_001216531.1\|1195035_1196028_-	glycine betaine/L-proline ABC transporter substrate-binding protein ProX	NA	NA	NA	NA
WP_000774975.1\|1196085_1197150_-	glycine betaine/L-proline ABC transporter permease ProW	NA	NA	NA	NA
WP_000985490.1\|1197142_1198345_-	glycine betaine/L-proline ABC transporter ATP-binding protein ProV	G3M9Y6	Bacillus_virus	4.9e-28	39.4
WP_000777950.1\|1198700_1199660_-	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	2.9e-132	71.2
WP_000246562.1\|1199669_1201814_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	3.8e-196	48.5
WP_000080944.1\|1201786_1202197_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A142F1R4	Bacillus_phage	2.7e-18	44.4
WP_001223227.1\|1202193_1202439_-	glutaredoxin-like protein NrdH	Q5K5J3	Oenococcus_phage	1.8e-06	35.3
WP_001295174.1\|1202686_1203016_-	DUF883 domain-containing protein	NA	NA	NA	NA
WP_000281320.1\|1203167_1203512_+	YgaC family protein	NA	NA	NA	NA
WP_000492658.1\|1203548_1203998_-	L-alanine exporter AlaE	NA	NA	NA	NA
WP_000115383.1\|1204665_1205070_+	DNA-binding protein StpA	NA	NA	NA	NA
WP_001229454.1\|1205116_1205641_-	thiosulfate sulfurtransferase YgaP	NA	NA	NA	NA
WP_000137280.1\|1205650_1205950_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000508177.1\|1206132_1206291_+	YqaE/Pmp3 family membrane protein	NA	NA	NA	NA
WP_000522417.1\|1206374_1206824_+	potassium binding protein Kbp	A0A090DBR9	Clostridium_phage	2.6e-06	39.5
WP_000156815.1\|1206824_1207487_-	DNA-binding transcriptional regulator CsiR	NA	NA	NA	NA
WP_001469552.1\|1207507_1208908_-	GABA permease	NA	NA	NA	NA
WP_000097678.1\|1209145_1210426_-	4-aminobutyrate--2-oxoglutarate transaminase	A0A1V0SKB7	Klosneuvirus	2.1e-32	29.9
WP_000772849.1\|1210439_1211888_-	NADP-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_000271899.1\|1211910_1213179_-	L-2-hydroxyglutarate oxidase	NA	NA	NA	NA
WP_001469551.1\|1213198_1214176_-	carbon starvation induced protein CsiD	NA	NA	NA	NA
WP_000491450.1\|1214511_1216764_-	hypothetical protein	NA	NA	NA	NA
WP_071526532.1\|1219871_1220039_+	recombinase family protein	A0A1S6L009	Salmonella_phage	3.5e-09	73.8
WP_001131441.1\|1220301_1220421_+	hypothetical protein	NA	NA	NA	NA
WP_024186566.1\|1220485_1225054_+	adhesin-like autotransporter YpjA/EhaD	NA	NA	NA	NA
1223156:1223171	attL	NA	NA	NA	NA
WP_000162574.1\|1225791_1226274_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	4.0e-29	46.8
WP_000600189.1\|1226405_1226882_+	type II toxin-antitoxin system toxin RatA	NA	NA	NA	NA
WP_001117838.1\|1226871_1227162_+	RnfH family protein	NA	NA	NA	NA
WP_001203437.1\|1227223_1227565_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_000880913.1\|1227713_1229375_-	DNA repair protein RecN	NA	NA	NA	NA
WP_001059169.1\|1229460_1230339_-	NAD(+) kinase	NA	NA	NA	NA
WP_001296310.1\|1230461_1231055_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_010723175.1\|1231109_1232396_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_001338897.1\|1232416_1233208_-	inner membrane protein YpjD	NA	NA	NA	NA
WP_000460035.1\|1233374_1234736_+	signal recognition particle protein	NA	NA	NA	NA
WP_000256450.1\|1234984_1235233_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_000043335.1\|1235251_1235800_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_000264777.1\|1235830_1236598_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_000065253.1\|1236639_1236987_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_000948616.1\|1237192_1237915_+	hypothetical protein	NA	NA	NA	NA
WP_000972008.1\|1237952_1238171_-	DNA-binding transcriptional regulator	Q37973	Salmonella_virus	8.6e-32	81.9
WP_000884169.1\|1238247_1239420_-	phage late control D family protein	Q6K1G4	Salmonella_virus	9.0e-168	78.3
WP_000978925.1\|1239422_1239887_-\|tail	phage tail protein	A0A0F7LBX3	Escherichia_phage	4.5e-62	78.4
WP_000069481.1\|1239898_1242328_-\|tail	phage tail tape measure protein	S4TP64	Salmonella_phage	6.2e-280	79.5
WP_000763326.1\|1242320_1242440_-\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	3.7e-13	84.6
WP_000361834.1\|1242481_1242754_-\|tail	phage tail assembly protein	A0A0F7LBN9	Escherichia_phage	1.3e-29	78.8
WP_001207671.1\|1242816_1243335_-\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	3.0e-75	80.2
WP_001286665.1\|1243347_1244535_-\|tail	phage tail sheath protein	A0A0F7LBW9	Escherichia_phage	1.0e-190	82.8
WP_001195984.1\|1244599_1245178_-	recombinase family protein	A0A0F7LA37	Escherichia_phage	3.5e-80	80.8
WP_000982368.1\|1245204_1245705_+\|tail	tail fiber protein	Q9MCR6	Enterobacteria_phage	4.0e-56	69.5
WP_001030515.1\|1245704_1246307_+\|tail	tail fiber assembly protein	Q9MCR5	Enterobacteria_phage	4.9e-93	87.7
WP_001106837.1\|1246278_1246719_-\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	1.6e-53	70.3
WP_000208951.1\|1246740_1247700_-\|tail	phage tail protein	F1BUP1	Erwinia_phage	6.4e-87	50.8
WP_000066790.1\|1247696_1248308_-\|tail	phage tail protein I	A0A218M4J3	Erwinia_phage	1.5e-94	83.1
WP_001273711.1\|1248300_1249209_-\|plate	baseplate assembly protein	A0A218M4K5	Erwinia_phage	4.6e-135	82.1
WP_000213440.1\|1249213_1249561_-\|plate	baseplate assembly protein	A0A0F7LDQ1	Escherichia_phage	2.8e-40	70.4
WP_001097317.1\|1249557_1250199_-\|plate	phage baseplate assembly protein V	Q6K1H6	Salmonella_virus	2.3e-96	83.6
WP_001366609.1\|1250275_1251619_-	DUF4062 domain-containing protein	NA	NA	NA	NA
WP_000997681.1\|1251656_1252124_-	phage virion morphogenesis protein	O80313	Escherichia_phage	8.3e-48	66.4
WP_000277801.1\|1252116_1252584_-\|tail	phage tail protein	U5N0S7	Enterobacteria_phage	9.7e-57	69.7
WP_000849742.1\|1252691_1253105_-\|lysis	LysB family phage lysis regulatory protein	O80310	Escherichia_phage	7.6e-37	60.6
WP_000534553.1\|1253101_1253611_-	lysozyme	A0A218M4K3	Erwinia_phage	2.1e-76	82.1
WP_000524754.1\|1253594_1253816_-	hypothetical protein	A0A218M4L5	Erwinia_phage	8.7e-24	71.2
WP_001019825.1\|1253806_1254010_-\|tail	tail protein X	U5N3E7	Enterobacteria_phage	6.1e-24	79.1
WP_000177981.1\|1254009_1254510_-\|head	head completion/stabilization protein	U5N0S3	Enterobacteria_phage	2.9e-59	68.5
WP_000224817.1\|1254607_1255366_-\|terminase	terminase endonuclease subunit	Q94MJ2	Enterobacteria_phage	6.6e-79	66.4
WP_001224498.1\|1255369_1256575_-\|capsid	phage major capsid protein, P2 family	Q94MI3	Enterobacteria_phage	1.4e-126	62.0
WP_001085420.1\|1256606_1257470_-\|capsid	GPO family capsid scaffolding protein	A0A218M4L9	Erwinia_phage	1.5e-98	63.1
WP_000214162.1\|1257634_1259404_+\|terminase	terminase ATPase subunit family protein	Q9T0R3	Escherichia_phage	8.5e-287	80.8
WP_000042185.1\|1259403_1260432_+\|portal	phage portal protein	Q6K1J0	Salmonella_virus	4.1e-164	79.8
WP_000609549.1\|1260488_1261175_-	hypothetical protein	NA	NA	NA	NA
WP_000235290.1\|1261171_1262155_-	hypothetical protein	NA	NA	NA	NA
WP_000232871.1\|1262526_1262709_-	hypothetical protein	A0A0M5M1G5	Salmonella_phage	3.9e-22	83.3
WP_001366581.1\|1262898_1265046_-	replication endonuclease	A0A218M4H2	Erwinia_phage	0.0e+00	88.2
WP_000786065.1\|1265047_1265269_-	TraR/DksA family transcriptional regulator	A0A0M4S5Q7	Salmonella_phage	2.2e-27	79.5
WP_001246240.1\|1265268_1265496_-	DUF2732 domain-containing protein	A0A0M3UL87	Salmonella_phage	3.8e-30	96.0
WP_000085637.1\|1265565_1265766_-	hypothetical protein	A0A0M5M7U3	Salmonella_phage	3.3e-30	95.5
WP_000916540.1\|1265752_1265980_-	DUF2724 domain-containing protein	A0A0M4RTI3	Salmonella_phage	2.5e-34	89.3
WP_000459330.1\|1265987_1266497_-	phage regulatory CII family protein	A0A0M4QWN1	Salmonella_phage	2.4e-85	94.1
WP_000188833.1\|1266532_1266757_-	hypothetical protein	NA	NA	NA	NA
WP_021529281.1\|1266882_1267461_+	phage repressor protein CI	Q6K1G0	Salmonella_virus	2.5e-46	49.5
WP_000111946.1\|1267465_1268503_+\|integrase	site-specific integrase	A0A0M4S6G4	Salmonella_phage	4.8e-157	76.5
WP_001408077.1\|1268492_1269422_+	hypothetical protein	NA	NA	NA	NA
WP_000589822.1\|1269625_1270108_-	OmpA family protein	NA	NA	NA	NA
WP_000969047.1\|1270123_1271350_-	diguanylate cyclase DgcN	NA	NA	NA	NA
WP_001212391.1\|1271339_1271858_-	YfiR family protein	NA	NA	NA	NA
WP_000976004.1\|1272007_1272373_-	DUF2799 domain-containing protein	NA	NA	NA	NA
WP_001168045.1\|1272581_1273652_+	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	4.0e-90	51.2
WP_000225222.1\|1273662_1274784_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_000200110.1\|1274827_1275988_-	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
1275267:1275282	attR	NA	NA	NA	NA
WP_001386991.1\|1276087_1276135_-	hypothetical protein	NA	NA	NA	NA
WP_000178456.1\|1276238_1276580_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_000197686.1\|1276850_1277588_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_000079109.1\|1277722_1278703_+	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_000040165.1\|1278699_1279431_+	polyphenol oxidase	NA	NA	NA	NA
WP_001235102.1\|1279560_1282134_+	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	2.6e-127	35.3
WP_000841106.1\|1287935_1289234_+	alpha-ketoglutarate permease	Q6JIH2	Burkholderia_virus	2.8e-45	31.7
WP_001221085.1\|1289230_1289554_-	YfiM family lipoprotein	NA	NA	NA	NA
WP_000949265.1\|1289599_1290955_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_000082985.1\|1291068_1293729_-	protein lysine acetyltransferase	NA	NA	NA	NA
WP_001300438.1\|1293760_1294459_-	DTW domain-containing protein	NA	NA	NA	NA
WP_001098726.1\|1294527_1294947_-	thioredoxin TrxC	A0A0K2FIM3	Achromobacter_phage	2.8e-15	38.5
WP_000997418.1\|1295153_1296191_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA

DBSCAN-SWA_3

1524714 : 1567809

Enterobacteria_phage(60.0%)

terminase,lysis,portal,holin,coat,integrase

attL 1529347:1529362|attR 1567985:1568000

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001559548.1\|1524714_1526148_-	glycoside hydrolase family 32 protein	F8WPR5	Bacillus_phage	5.3e-29	25.3
WP_001274877.1\|1526363_1527278_+	aminoimidazole riboside kinase	NA	NA	NA	NA
WP_001197031.1\|1527349_1528597_+	oligosaccharide MFS transporter	NA	NA	NA	NA
WP_001316510.1\|1528676_1528829_-	hypothetical protein	NA	NA	NA	NA
WP_001163428.1\|1529126_1529327_-	response regulator inhibitor TorI	K7P7V0	Enterobacteria_phage	2.4e-33	100.0
1529347:1529362	attL	NA	NA	NA	NA
WP_001281200.1\|1529450_1529795_-	hypothetical protein	A0A0P0ZB93	Stx2-converting_phage	5.9e-59	99.1
WP_016262221.1\|1529821_1529989_-	hypothetical protein	A0A0K2FJ46	Enterobacteria_phage	1.8e-26	96.4
WP_096057884.1\|1530088_1530700_-	hypothetical protein	C6ZR26	Salmonella_phage	2.6e-33	68.6
WP_001593200.1\|1530701_1531001_-	hypothetical protein	A5VWB2	Enterobacteria_phage	1.4e-56	97.0
WP_096057885.1\|1530997_1531543_-	hypothetical protein	J9Q748	Salmonella_phage	4.6e-82	82.1
WP_096057886.1\|1531539_1531971_-	hypothetical protein	K7PMI0	Enterobacteria_phage	6.0e-61	83.9
WP_001214452.1\|1531967_1532132_-	DUF2737 family protein	A0A2I6PID4	Escherichia_phage	4.6e-22	98.1
WP_001111299.1\|1532142_1532439_-	DUF2856 family protein	A5VWB0	Enterobacteria_phage	3.9e-51	99.0
WP_000951323.1\|1532462_1532846_-	hypothetical protein	K7P6P8	Enterobacteria_phage	8.5e-67	99.2
WP_000031367.1\|1532845_1533451_-	ERF family protein	K7P6W7	Enterobacteria_phage	4.1e-108	100.0
WP_001308813.1\|1533707_1533983_-	hypothetical protein	K7PGS9	Enterobacteria_phage	1.6e-46	100.0
WP_053878831.1\|1534219_1534516_-	hypothetical protein	K7PH98	Enterobacteria_phage	2.1e-49	98.0
WP_000394305.1\|1534555_1534807_-	hypothetical protein	A4KWV4	Enterobacteria_phage	1.4e-41	98.8
WP_096057887.1\|1535097_1535481_-	antitermination protein	G9L671	Escherichia_phage	1.5e-63	99.2
WP_001245922.1\|1535928_1536363_-	protein rexB	M1FPN8	Enterobacteria_phage	1.9e-70	100.0
WP_000788349.1\|1536378_1537218_-	protein rexA	M1FPD4	Enterobacteria_phage	3.7e-155	100.0
WP_094322871.1\|1537330_1538044_-	LexA family transcriptional regulator	A4KWS0	Enterobacteria_phage	1.8e-131	99.6
WP_000437871.1\|1538144_1538345_+	hypothetical protein	A4KWT7	Enterobacteria_phage	1.3e-29	97.0
WP_000189606.1\|1538482_1538779_+	hypothetical protein	Q9MCQ0	Enterobacteria_phage	1.8e-48	100.0
WP_000166207.1\|1538811_1538958_+	DUF2740 family protein	Q687G5	Enterobacteria_phage	1.1e-19	100.0
WP_000067067.1\|1538950_1539811_+	replication protein	K7PL20	Enterobacteria_phage	9.6e-159	99.3
WP_001331794.1\|1539918_1541799_+	bifunctional DNA primase/helicase	K7PK08	Enterobacteria_phage	0.0e+00	100.0
WP_000736913.1\|1541876_1542317_+	recombination protein NinB	M1FPM8	Enterobacteria_phage	1.2e-80	100.0
WP_000113772.1\|1542453_1542630_+	NinE family protein	I6RSQ2	Salmonella_phage	4.6e-28	100.0
WP_001543886.1\|1542632_1543034_+	hypothetical protein	K7PJK0	Enterobacteria_phage	6.0e-71	98.5
WP_001563210.1\|1542993_1543203_+	protein ninF	G9L691	Escherichia_phage	1.4e-31	100.0
WP_096057889.1\|1543195_1543918_+	DNA-binding protein	K7PL51	Enterobacteria_phage	3.3e-120	92.5
WP_096057890.1\|1543917_1544208_+	DUF1364 domain-containing protein	K7P7N7	Enterobacteria_phage	5.8e-52	99.0
WP_001008194.1\|1544204_1544567_+	RusA family crossover junction endodeoxyribonuclease	K7P6I9	Enterobacteria_phage	2.7e-62	99.2
WP_000994516.1\|1544563_1544752_+	protein ninH	A5VW84	Enterobacteria_phage	5.5e-27	100.0
WP_001235461.1\|1544748_1545372_+	antitermination protein	K7PM87	Enterobacteria_phage	3.0e-114	100.0
WP_000783734.1\|1546344_1546668_+\|holin	phage holin, lambda family	G5DA93	Enterobacteria_phage	1.3e-52	100.0
WP_000229392.1\|1546651_1547128_+	glycoside hydrolase family protein	K7PKV2	Enterobacteria_phage	1.7e-88	100.0
WP_096057892.1\|1547124_1547562_+\|lysis	lysis protein	Q716B4	Shigella_phage	6.5e-71	97.9
WP_021527496.1\|1547549_1547702_+	hypothetical protein	K7PHR3	Enterobacteria_phage	3.6e-21	98.0
WP_089583698.1\|1547906_1548431_+	Rha family transcriptional regulator	G8C7W4	Escherichia_phage	1.2e-87	94.8
WP_000807789.1\|1548730_1548973_+	DUF2560 family protein	A5VW77	Enterobacteria_phage	3.7e-36	100.0
WP_089616539.1\|1548976_1549264_+	hypothetical protein	I1TQD4	Pseudomonas_phage	2.2e-06	33.3
WP_032178582.1\|1549273_1549453_+	hypothetical protein	A0A088CPS9	Enterobacteria_phage	4.6e-23	93.2
WP_000729920.1\|1549476_1549965_+	hypothetical protein	G8EYI7	Enterobacteria_phage	1.4e-90	100.0
WP_000417850.1\|1549942_1551442_+\|terminase	terminase	A0A2D1GLW6	Escherichia_phage	1.2e-305	99.4
WP_096057893.1\|1551442_1553608_+\|portal	portal protein	A0A2D1GLJ6	Escherichia_phage	0.0e+00	99.4
WP_000373006.1\|1553621_1554533_+	scaffold protein	A0A2D1GLN7	Escherichia_phage	1.3e-161	100.0
WP_027662812.1\|1554532_1555828_+\|coat	coat protein	A0A2D1GLV2	Escherichia_phage	2.7e-242	99.1
WP_096057894.1\|1555872_1556097_+	hypothetical protein	A0A2D1GLK1	Escherichia_phage	4.0e-24	69.3
WP_001054834.1\|1556074_1556575_+	DNA recombination protein RmuC	G8EYJ2	Enterobacteria_phage	6.5e-91	99.4
WP_096057895.1\|1556575_1557994_+	hypothetical protein	A0A2D1GM00	Escherichia_phage	7.8e-275	98.7
WP_096057896.1\|1557993_1558947_+	hypothetical protein	Q716G6	Shigella_phage	1.3e-92	84.2
WP_096057897.1\|1558946_1559402_+	DUF2824 family protein	Q716G5	Shigella_phage	5.2e-87	98.7
WP_096057898.1\|1559404_1560097_+	DNA transfer protein	G5DA80	Enterobacteria_phage	4.3e-109	97.8
WP_096057899.1\|1560106_1561438_+	acyltransferase	A0A2D1GLX5	Escherichia_phage	7.7e-216	99.1
WP_096057900.1\|1561438_1563832_+	lytic transglycosylase domain-containing protein	Q716G2	Shigella_phage	0.0e+00	96.6
WP_086200620.1\|1565743_1566337_-	hypothetical protein	NA	NA	NA	NA
WP_096057901.1\|1566651_1567809_-\|integrase	prophage integrase IntS	Q716F9	Shigella_phage	2.0e-220	98.4
1567985:1568000	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1806332 : 1815775

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000569373.1\|1806332_1807259_+	glycine betaine ABC transporter ATP binding protein YehX	G3M9Y6	Bacillus_virus	4.8e-23	30.8
WP_000783103.1\|1807263_1807995_+	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_001216963.1\|1807975_1808083_-	protein YohO	NA	NA	NA	NA
WP_001240388.1\|1808142_1808874_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	8.2e-111	98.5
WP_001295431.1\|1809095_1810781_+	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
WP_001308766.1\|1810777_1811497_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001295430.1\|1811543_1812014_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
WP_001295429.1\|1812055_1812517_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	1.9e-76	100.0
WP_001604659.1\|1812641_1814642_-	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	95.2
WP_001468956.1\|1814638_1815775_-	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	4.5e-164	98.0

DBSCAN-SWA_5

2342471 : 2410169

Enterobacteria_phage(44.0%)

terminase,portal,tail,protease,lysis,integrase

attL 2354653:2354668|attR 2391655:2391670

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001260849.1\|2342471_2343293_-\|protease	serine protease	NA	NA	NA	NA
WP_000233092.1\|2343392_2343476_-	hypothetical protein	NA	NA	NA	NA
WP_000743948.1\|2343568_2343904_-	acid shock protein	NA	NA	NA	NA
WP_000091841.1\|2344300_2345554_-	MFS transporter	NA	NA	NA	NA
WP_001019557.1\|2345660_2346554_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000225257.1\|2346688_2347909_+	DNA-binding transcriptional repressor Mlc	NA	NA	NA	NA
WP_000919226.1\|2348033_2348729_+	ATP-dependent dethiobiotin synthetase BioD	NA	NA	NA	NA
WP_071556282.1\|2348681_2349974_-	voltage-gated ClC-type chloride channel ClcB	NA	NA	NA	NA
WP_000148702.1\|2350132_2350747_-	Tat proofreading chaperone DmsD	A0A077SLS7	Escherichia_phage	7.3e-28	35.8
WP_000526478.1\|2350789_2351644_-	dimethyl sulfoxide reductase anchor subunit	NA	NA	NA	NA
WP_000213028.1\|2351645_2352263_-	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	9.5e-76	59.6
2354653:2354668	attL	NA	NA	NA	NA
WP_000041647.1\|2354758_2357185_-	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	3.8e-213	49.1
WP_001295396.1\|2357383_2357689_-	DUF1161 domain-containing protein	NA	NA	NA	NA
WP_001445899.1\|2357796_2358507_+	YnfC family lipoprotein	NA	NA	NA	NA
WP_001138584.1\|2358509_2359070_-	spermidine N1-acetyltransferase	NA	NA	NA	NA
WP_000705205.1\|2359104_2359446_-	DUF1283 family protein	NA	NA	NA	NA
WP_000598292.1\|2359580_2359907_+	YnfA family protein	A0A218MNG8	uncultured_virus	9.9e-24	55.6
WP_001469153.1\|2360112_2361327_+	starvation-sensing protein RspA	Q6A202	Oenococcus_phage	1.4e-46	29.0
WP_000836037.1\|2361338_2362358_+	Zn-dependent oxidoreductase	E3SJ82	Synechococcus_phage	4.3e-17	26.2
WP_001360138.1\|2362415_2362526_+	hypothetical protein	NA	NA	NA	NA
WP_001774504.1\|2362545_2363826_-\|integrase	site-specific integrase	B6DZ48	Enterobacteria_phage	1.7e-156	62.6
WP_001296941.1\|2363860_2364097_-	excisionase family protein	S4TND0	Salmonella_phage	6.1e-15	50.7
WP_001774503.1\|2364184_2366656_-	exonuclease	A0A192Y6E0	Salmonella_phage	8.5e-59	57.5
WP_001296931.1\|2366748_2366940_-\|lysis	lysis protein YdfD	NA	NA	NA	NA
WP_000854559.1\|2366936_2367125_-	cell division inhibition protein DicB	NA	NA	NA	NA
WP_157740064.1\|2367611_2368187_-	hypothetical protein	NA	NA	NA	NA
WP_000379575.1\|2368188_2368344_-	DUF1391 family protein	M4QQ57	Salicola_phage	3.0e-07	53.2
WP_000448563.1\|2368510_2368918_-	DNA-binding transcriptional dual regulator DicA	K7PM82	Enterobacteria_phage	4.4e-13	54.7
WP_000920568.1\|2369001_2369232_+	dicB transcriptional regulator DicC	NA	NA	NA	NA
WP_000705346.1\|2369215_2369737_+	hypothetical protein	NA	NA	NA	NA
WP_000054501.1\|2369717_2370683_+	hypothetical protein	U5P0A0	Shigella_phage	9.7e-59	63.9
WP_001774502.1\|2370723_2371146_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	3.4e-61	84.9
WP_001774471.1\|2371383_2372718_-	FRG domain-containing protein	Q9AZ51	Lactococcus_phage	2.0e-06	34.1
WP_157740066.1\|2373310_2373418_-	hypothetical protein	Q7Y2Q9	Escherichia_phage	1.1e-08	96.6
WP_000884073.1\|2373462_2373675_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	6.6e-29	95.7
WP_000980999.1\|2373891_2374143_+	hypothetical protein	NA	NA	NA	NA
WP_001309521.1\|2374209_2374488_+	hypothetical protein	NA	NA	NA	NA
WP_001774470.1\|2374489_2375539_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	5.7e-113	57.6
WP_001047131.1\|2375552_2376305_+	antitermination protein	Q8SBE4	Shigella_phage	1.4e-129	94.4
WP_120795389.1\|2376582_2376672_-	Qin prophage; protein YnfS	NA	NA	NA	NA
WP_000087756.1\|2376726_2376939_-	cold shock-like protein CspF	NA	NA	NA	NA
WP_000066484.1\|2377239_2377455_+	cold shock-like protein CspB	A0A1W6JNX5	Morganella_phage	3.4e-25	76.5
WP_000839590.1\|2378208_2378424_+\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	1.1e-31	94.4
WP_001309518.1\|2378407_2378740_+	DUF1327 domain-containing protein	K7PGU6	Enterobacteria_phage	1.1e-25	64.3
WP_001092973.1\|2378736_2379270_+	lysozyme	K7PLY1	Enterobacteria_phage	8.4e-97	92.7
WP_001071769.1\|2379266_2379764_+	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	2.9e-06	29.5
WP_000066495.1\|2380126_2380339_+	cold shock protein CspI	A0A1W6JNX5	Morganella_phage	1.2e-22	74.3
WP_071526745.1\|2380349_2380538_+	cold-shock protein	NA	NA	NA	NA
WP_001443523.1\|2380685_2380841_+	hypothetical protein	NA	NA	NA	NA
WP_001019207.1\|2381013_2381187_+	addiction module toxin, GnsA/GnsB family	NA	NA	NA	NA
WP_000548593.1\|2381482_2381689_+	hypothetical protein	A0A0K2FJ18	Enterobacteria_phage	3.4e-22	79.4
WP_000421823.1\|2382239_2382779_+	DUF1441 family protein	A5LH26	Enterobacteria_phage	1.8e-94	99.4
WP_023277784.1\|2382787_2384887_+\|terminase	phage terminase large subunit family protein	A5LH27	Enterobacteria_phage	0.0e+00	96.4
WP_001072975.1\|2384883_2385096_+	hypothetical protein	A5LH28	Enterobacteria_phage	1.1e-31	100.0
WP_000985929.1\|2385095_2386604_+\|portal	phage portal protein	A5LH29	Enterobacteria_phage	4.5e-289	99.6
WP_096057908.1\|2386548_2388576_+\|protease	Clp protease ClpP	A0A291AWT6	Escherichia_phage	0.0e+00	99.2
WP_023140705.1\|2388662_2388986_+	DUF2190 family protein	A0A291AWX2	Escherichia_phage	8.5e-52	99.1
WP_001283153.1\|2388978_2389254_+	DNA breaking-rejoining protein	K7PH43	Enterobacteria_phage	2.3e-45	100.0
WP_023140704.1\|2389265_2389844_+\|tail	phage tail protein	A5LH33	Enterobacteria_phage	1.2e-101	99.5
WP_001079419.1\|2389840_2390242_+\|tail	tail protein	A5LH34	Enterobacteria_phage	1.9e-72	99.2
WP_021560209.1\|2390252_2390996_+\|tail	phage tail protein	A5LH35	Enterobacteria_phage	2.3e-132	99.2
WP_001300035.1\|2391056_2391443_+\|tail	phage minor tail protein G	A0A291AWW5	Escherichia_phage	1.6e-65	100.0
WP_001161009.1\|2391451_2391781_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	7.6e-56	100.0
2391655:2391670	attR	NA	NA	NA	NA
WP_021574610.1\|2391752_2394818_+\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	0.0e+00	99.1
WP_000447253.1\|2394817_2395147_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	1.7e-60	100.0
WP_096057909.1\|2395156_2395855_+\|tail	phage minor tail protein L	A5LH40	Enterobacteria_phage	5.1e-134	99.1
WP_096057910.1\|2395860_2396604_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	4.3e-147	96.7
WP_001399694.1\|2396501_2397149_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	1.2e-110	96.7
WP_096057911.1\|2397209_2400608_+	host specificity protein J	A0A0K2FI38	Escherichia_phage	0.0e+00	88.3
WP_096057912.1\|2400674_2401274_+	Ail/Lom family outer membrane beta-barrel protein	A0A0P0ZCF6	Stx2-converting_phage	1.3e-109	97.5
WP_096057913.1\|2401338_2404737_+	short-chain fatty acid transporter	X2KTY7	Enterobacteria_phage	6.3e-12	36.4
WP_000885601.1\|2404736_2405312_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	4.1e-105	97.4
WP_000078177.1\|2405409_2406000_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	1.6e-24	38.8
WP_000836768.1\|2406316_2406550_-	cold shock protein YdfK	A0A192Y6D5	Salmonella_phage	1.1e-32	88.3
WP_120795384.1\|2406618_2406732_-	Rac prophage; protein YnaM	A0A1C9IHU6	Salmonella_phage	8.4e-07	80.6
WP_000347482.1\|2407336_2408620_+	MHS family MFS transporter	NA	NA	NA	NA
WP_000527815.1\|2408708_2410169_+	mannitol dehydrogenase family protein	H8ZJP8	Ostreococcus_tauri_virus	2.5e-42	29.0

DBSCAN-SWA_6

2822174 : 2879038

Shigella_phage(55.77%)

terminase,portal,tail,tRNA,plate,protease,transposase,head,holin,integrase

attL 2845208:2845224|attR 2886437:2886453

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001469313.1\|2822174_2822498_+	anti-adapter protein IraM	Q8HAJ1	Enterobacteria_phage	1.8e-41	65.4
WP_095501568.1\|2822600_2822792_-	isocitrate dehydrogenase	Q77Z09	Phage_21	4.4e-24	100.0
WP_000834396.1\|2823575_2825465_+	DUF262 domain-containing protein	NA	NA	NA	NA
WP_071556291.1\|2825498_2825690_-	recombinase family protein	A0A1S6L009	Salmonella_phage	1.9e-14	83.3
WP_010376608.1\|2826222_2826570_+	hypothetical protein	NA	NA	NA	NA
WP_001045545.1\|2826535_2827144_-\|tail	tail fiber assembly protein	Q9MCR5	Enterobacteria_phage	7.6e-94	87.3
WP_019843047.1\|2827143_2827893_-\|tail	tail fiber protein	Q9MCR6	Enterobacteria_phage	1.2e-53	67.7
WP_000383560.1\|2827896_2828481_-	YmfQ family protein	O22003	Shigella_phage	7.8e-112	98.5
WP_000785316.1\|2828471_2829530_-\|plate	baseplate J/gp47 family protein	U5P424	Shigella_phage	8.1e-200	98.6
WP_000424732.1\|2829516_2829942_-	hypothetical protein	U5P0R9	Shigella_phage	2.3e-81	100.0
WP_000643721.1\|2829941_2830490_-\|plate	phage baseplate assembly protein	U5P081	Shigella_phage	3.6e-95	96.7
WP_000999527.1\|2830489_2831569_-\|plate	baseplate protein	U5P0H6	Shigella_phage	6.9e-207	99.7
WP_001469317.1\|2831565_2832894_-	hypothetical protein	Q8SBG8	Shigella_phage	2.7e-245	98.6
WP_000679480.1\|2832952_2833483_-	hypothetical protein	NA	NA	NA	NA
WP_000807179.1\|2833574_2835407_-\|tail	phage tail tape measure protein	Q8SBG9	Shigella_phage	5.3e-300	97.4
WP_000661054.1\|2835548_2835818_-\|tail	phage tail assembly protein	M1FPE4	Enterobacteria_phage	3.5e-43	100.0
WP_000090993.1\|2835817_2836174_-	hypothetical protein	U5P076	Shigella_phage	1.2e-62	99.2
WP_000155713.1\|2836173_2837670_-\|tail	phage tail protein	M1FN90	Enterobacteria_phage	4.5e-273	99.0
WP_096057916.1\|2837653_2837824_-	DUF2635 domain-containing protein	Q8SBH3	Shigella_phage	2.7e-25	98.2
WP_000779279.1\|2837832_2838393_-	hypothetical protein	M1FQV7	Enterobacteria_phage	2.3e-105	99.5
WP_000235781.1\|2838389_2838896_-	hypothetical protein	M1FPE2	Enterobacteria_phage	6.5e-91	99.4
WP_000702406.1\|2838870_2839281_-\|head	phage head closure protein	M1FJ87	Enterobacteria_phage	7.7e-74	98.5
WP_000927711.1\|2839277_2839601_-\|head,tail	phage gp6-like head-tail connector protein	U5P072	Shigella_phage	1.1e-56	99.1
WP_000601358.1\|2839603_2839804_-	hypothetical protein	S5FNU1	Shigella_phage	1.0e-26	98.5
WP_001193635.1\|2841072_2841723_-\|head,protease	HK97 family phage prohead protease	U5P4H2	Shigella_phage	2.4e-117	98.6
WP_000466255.1\|2841700_2842942_-\|portal	phage portal protein	U5P411	Shigella_phage	2.0e-242	99.8
WP_000605606.1\|2842941_2843124_-	hypothetical protein	S5FXQ9	Shigella_phage	1.7e-25	100.0
WP_103852454.1\|2843135_2844632_-\|terminase	terminase large subunit	A0A1C9IIA1	Salmonella_phage	4.8e-299	99.2
WP_000929184.1\|2844865_2845360_-\|terminase	phage terminase small subunit P27 family	U5P067	Shigella_phage	2.3e-88	100.0
2845208:2845224	attL	NA	NA	NA	NA
WP_001135215.1\|2845485_2845836_-	HNH endonuclease	U5P4L6	Shigella_phage	7.5e-62	95.7
WP_115770954.1\|2845862_2846135_-	peptidase	Q8SBD8	Shigella_phage	4.8e-40	98.9
WP_001469324.1\|2846019_2846412_-	DUF2570 domain-containing protein	Q8SBD9	Shigella_phage	1.1e-61	96.9
WP_001157006.1\|2846395_2846872_-	glycoside hydrolase family protein	S5FV07	Shigella_phage	1.0e-85	95.6
WP_001120491.1\|2846875_2847202_-\|holin	phage holin, lambda family	S5FM86	Shigella_phage	6.8e-57	99.1
WP_000862379.1\|2847499_2848315_+	toll/interleukin-1 receptor domain-containing protein	K7PLZ9	Enterobacterial_phage	6.2e-83	59.6
WP_087604723.1\|2848355_2848724_-	antitermination protein Q	A5LH77	Enterobacteria_phage	1.1e-52	82.5
WP_024185234.1\|2848738_2849728_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	3.4e-192	98.2
WP_001061405.1\|2849735_2850533_-	KilA-N domain-containing protein	A0A0P0ZCS0	Stx2-converting_phage	2.6e-150	99.6
WP_000767111.1\|2850552_2850942_-	RusA family crossover junction endodeoxyribonuclease	A0A0P0ZD39	Stx2-converting_phage	3.5e-68	99.2
WP_000210156.1\|2850938_2851265_-	LexA family transcriptional regulator	A0A291AWY9	Escherichia_phage	1.2e-53	99.1
WP_001440426.1\|2851264_2851759_-	PerC family transcriptional regulator	U5P0U0	Shigella_phage	1.6e-86	97.0
WP_000104947.1\|2851755_2852697_-	helix-turn-helix domain-containing protein	S5FM81	Shigella_phage	9.5e-144	99.4
WP_001250271.1\|2852686_2852866_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	6.0e-15	68.5
WP_000515851.1\|2853041_2853599_-	protein YmfL	S5FXP0	Shigella_phage	1.1e-96	96.8
WP_000649477.1\|2853642_2853843_-	transcriptional regulator	U5P445	Shigella_phage	7.9e-32	100.0
WP_000848744.1\|2853933_2854608_+	LexA family transcriptional regulator	U5P0T5	Shigella_phage	2.7e-132	99.6
WP_000549626.1\|2854842_2855049_+	hypothetical protein	NA	NA	NA	NA
WP_000016389.1\|2855020_2855455_-	hypothetical protein	U5P096	Shigella_phage	8.4e-79	100.0
WP_000135680.1\|2855923_2856286_+	hypothetical protein	Q8SBF8	Shigella_phage	8.6e-61	100.0
WP_000081255.1\|2856351_2857176_+	DUF2303 family protein	U5P439	Shigella_phage	7.3e-148	98.9
WP_000008223.1\|2857304_2857853_+	5'-deoxynucleotidase	U5P0T3	Shigella_phage	2.8e-95	96.6
WP_021552251.1\|2857896_2858142_+	phage excisionase	NA	NA	NA	NA
WP_000741312.1\|2858122_2859250_+\|integrase	tyrosine-type recombinase/integrase	O21925	Phage_21	1.1e-122	60.3
WP_001177766.1\|2859365_2860262_+	hypothetical protein	NA	NA	NA	NA
WP_001180570.1\|2860236_2860701_+	hypothetical protein	NA	NA	NA	NA
WP_000340437.1\|2861222_2861837_-	hypothetical protein	NA	NA	NA	NA
WP_000444487.1\|2861960_2863211_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-23	100.0
WP_001248703.1\|2863382_2864036_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_000476085.1\|2864045_2864507_+	phosphatase NudJ	NA	NA	NA	NA
WP_001469332.1\|2864560_2865667_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_001297479.1\|2865702_2866344_+	high frequency lysogenization protein HflD	NA	NA	NA	NA
WP_000423742.1\|2866347_2867718_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	1.2e-107	44.9
WP_001265481.1\|2867887_2868559_+	two-component system response regulator PhoP	NA	NA	NA	NA
WP_000735413.1\|2868558_2870019_+	two-component system sensor histidine kinase PhoQ	NA	NA	NA	NA
WP_000456506.1\|2870094_2871216_+	cupin domain-containing protein	NA	NA	NA	NA
WP_000359452.1\|2871264_2872491_-	peptidase T	NA	NA	NA	NA
WP_000531596.1\|2872740_2873877_+	spermidine/putrescine ABC transporter ATP-binding protein PotA	Q6GZ03	Mycoplasma_phage	5.5e-29	39.8
WP_000799401.1\|2873860_2874718_+	spermidine/putrescine ABC transporter permease PotB	Q6GZ02	Mycoplasma_phage	6.7e-11	28.7
WP_000580316.1\|2874714_2875509_+	spermidine/putrescine ABC transporter permease PotC	NA	NA	NA	NA
WP_000759309.1\|2875505_2876552_+	spermidine/putrescine ABC transporter substrate-binding protein PotD	NA	NA	NA	NA
WP_001366277.1\|2876609_2877071_+	DUF3592 domain-containing protein	NA	NA	NA	NA
WP_000720218.1\|2877067_2877853_+	membrane protein	NA	NA	NA	NA
WP_000399660.1\|2878057_2879038_-\|transposase	IS110 family transposase	NA	NA	NA	NA
2886437:2886453	attR	NA	NA	NA	NA

DBSCAN-SWA_7

3069788 : 3157886

Enterobacteria_phage(68.97%)

terminase,portal,tail,tRNA,plate,protease,capsid,head,holin,integrase

attL 3101879:3101898|attR 3139704:3139723

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001469538.1\|3069788_3070574_-\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA
WP_000899598.1\|3070709_3071465_+	envelope biogenesis factor ElyC	NA	NA	NA	NA
WP_000436922.1\|3071465_3072359_-	YcbJ family phosphotransferase	NA	NA	NA	NA
WP_000011612.1\|3072512_3073259_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA
WP_000350058.1\|3073255_3073438_-	protein YcaR	NA	NA	NA	NA
WP_000056542.1\|3073489_3074722_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000570552.1\|3074758_3075745_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
WP_000551266.1\|3075741_3077490_-	lipid A ABC transporter ATP-binding protein/permease MsbA	W8CYL7	Bacillus_phage	3.3e-57	29.8
WP_000705748.1\|3077526_3079791_-	ComEC family protein	NA	NA	NA	NA
WP_000167336.1\|3079998_3080283_-	integration host factor subunit beta	A7KV42	Bacillus_phage	3.2e-10	40.2
WP_000140327.1\|3080442_3082116_-	30S ribosomal protein S1	NA	NA	NA	NA
WP_000125016.1\|3082226_3082910_-	(d)CMP kinase	NA	NA	NA	NA
WP_001353317.1\|3083082_3083847_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_000445213.1\|3084015_3085299_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_000057132.1\|3085369_3086458_-	3-phosphoserine/phosphohydroxythreonine transaminase	M1Q1P2	Streptococcus_phage	2.0e-81	47.1
WP_000642852.1\|3086656_3087349_-	DUF421 domain-containing protein	NA	NA	NA	NA
WP_001469537.1\|3087478_3089239_+	30S ribosomal protein S12 methylthiotransferase accessory protein YcaO	NA	NA	NA	NA
WP_000642546.1\|3089644_3090502_+	formate transporter FocA	NA	NA	NA	NA
WP_001292809.1\|3090556_3092839_+	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	1.3e-162	41.4
WP_000111043.1\|3093030_3093771_+	pyruvate formate lyase 1-activating protein	A0A2P0VNQ0	Tetraselmis_virus	8.0e-21	26.5
WP_000918526.1\|3093980_3095411_-	amino acid permease	NA	NA	NA	NA
WP_000109286.1\|3095620_3096769_-	MFS transporter	NA	NA	NA	NA
WP_000165876.1\|3097083_3097710_+	hydrolase	NA	NA	NA	NA
WP_000534643.1\|3097744_3098608_-	dimethyl sulfoxide reductase anchor subunit	NA	NA	NA	NA
WP_000213096.1\|3098609_3099227_-	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	2.9e-77	60.6
WP_000850305.1\|3099237_3101682_-	dimethylsulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	5.0e-221	49.8
3101879:3101898	attL	NA	NA	NA	NA
WP_000023738.1\|3101981_3102974_-\|integrase	tyrosine-type recombinase/integrase	A0A0F7LBR0	Escherichia_phage	2.0e-104	56.5
WP_000247830.1\|3103043_3103385_-	helix-turn-helix transcriptional regulator	Q1JS21	Enterobacteria_phage	2.5e-17	47.1
WP_001204238.1\|3103488_3104010_+	transcriptional regulator	NA	NA	NA	NA
WP_096057918.1\|3104014_3104437_+	hypothetical protein	NA	NA	NA	NA
WP_001287827.1\|3104443_3104635_-	hypothetical protein	NA	NA	NA	NA
WP_096057919.1\|3104770_3105121_+	DUF4761 family protein	A0A0A7NV42	Enterobacteria_phage	1.6e-56	94.0
WP_000158971.1\|3105131_3105419_+	hypothetical protein	A0A0A7NRX5	Enterobacteria_phage	7.8e-33	76.8
WP_000514277.1\|3105430_3105673_+	DUF4754 family protein	A0A0A7NQ71	Enterobacteria_phage	2.3e-38	100.0
WP_000021656.1\|3105669_3105783_+	hypothetical protein	A0A0A7NPW7	Enterobacteria_phage	2.5e-11	100.0
WP_000543036.1\|3105876_3106287_+	hypothetical protein	NA	NA	NA	NA
WP_000985157.1\|3106310_3106514_+	hypothetical protein	A0A0A7NPS8	Enterobacteria_phage	2.5e-25	83.6
WP_000153700.1\|3106510_3106777_+	winged helix-turn-helix transcriptional regulator	A0A0A7NV47	Enterobacteria_phage	2.0e-30	75.9
WP_021514993.1\|3106773_3107073_+	ead/Ea22-like family protein	A0A0A7NRX6	Enterobacteria_phage	1.1e-40	88.9
WP_001036814.1\|3107084_3107297_+	hypothetical protein	A0A0A7NQ74	Enterobacteria_phage	7.6e-25	86.6
WP_021514992.1\|3107293_3108118_+\|protease	serine protease	A0A0A7NPW9	Enterobacteria_phage	8.7e-125	96.3
WP_106884340.1\|3108173_3108794_+	hypothetical protein	S5MQL6	Escherichia_phage	2.6e-09	40.4
WP_021563452.1\|3108790_3109156_+	hypothetical protein	A0A0A7NRY1	Enterobacteria_phage	2.5e-60	96.7
WP_157740070.1\|3109162_3111985_+	replication endonuclease	A0A0A7NQ77	Enterobacteria_phage	0.0e+00	96.8
WP_033806518.1\|3112061_3113021_+	recombinase	A0A0A7NPX4	Enterobacteria_phage	9.9e-181	99.7
WP_000211256.1\|3113025_3113337_+	chromosome partitioning protein	A0A0A7NPT5	Enterobacteria_phage	5.0e-49	97.1
WP_001561007.1\|3113400_3113736_+	hypothetical protein	A0A0A7NV51	Enterobacteria_phage	2.6e-51	95.4
WP_024169082.1\|3113902_3114313_-	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA
WP_096057920.1\|3114309_3114654_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_000236495.1\|3115265_3115790_+	hypothetical protein	NA	NA	NA	NA
WP_096057921.1\|3115804_3116851_-\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	6.5e-202	99.4
WP_096057922.1\|3116850_3118602_-	oxidoreductase	A0A0A7NV54	Enterobacteria_phage	0.0e+00	97.6
WP_001262655.1\|3118756_3119593_+\|capsid	phage capsid scaffolding protein	A0A0A7NRY7	Enterobacteria_phage	2.7e-150	99.6
WP_001055125.1\|3119615_3120668_+\|capsid	phage major capsid protein, P2 family	A0A0A7NQ82	Enterobacteria_phage	2.7e-187	93.7
WP_096057923.1\|3120713_3121514_+\|terminase	terminase	A0A0A7NPX9	Enterobacteria_phage	1.4e-124	88.0
WP_001388919.1\|3121616_3122111_+\|head	head completion/stabilization protein	A0A0A7NPU2	Enterobacteria_phage	3.5e-89	98.8
WP_096057924.1\|3122110_3122311_+\|tail	phage tail protein	A0A0A7NV57	Enterobacteria_phage	1.3e-31	98.5
WP_000104350.1\|3122313_3122637_+\|holin	holin	A0A0A7NRY9	Enterobacteria_phage	1.6e-50	99.1
WP_096057925.1\|3122633_3123026_+	M15 family metallopeptidase	A0A0A7NQ86	Enterobacteria_phage	1.3e-70	99.2
WP_000780561.1\|3123022_3123430_+	DUF2570 domain-containing protein	A0A0A7NPY2	Enterobacteria_phage	1.4e-64	96.3
WP_096057926.1\|3123567_3124035_+\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	2.2e-85	98.7
WP_000356339.1\|3124027_3124663_+	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	1.1e-114	100.0
WP_096057927.1\|3124659_3125241_+\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	2.9e-103	99.0
WP_000213447.1\|3125237_3125588_+\|plate	baseplate assembly protein	A0A0A7NQ90	Enterobacteria_phage	9.2e-60	100.0
WP_001508666.1\|3125591_3126488_+\|plate	baseplate J-like family protein	A0A0A7NPY5	Enterobacteria_phage	4.6e-156	98.7
WP_096057928.1\|3126480_3127008_+\|tail	phage tail protein I	A0A0A7NPV1	Enterobacteria_phage	3.1e-83	87.7
WP_001508667.1\|3127018_3129676_+\|tail	phage tail protein	Q858V4	Yersinia_virus	1.7e-278	71.6
WP_000885638.1\|3129675_3130293_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	1.0e-85	80.9
WP_136755949.1\|3130989_3131478_-\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	5.2e-85	98.8
WP_096057930.1\|3131490_3134298_-\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	0.0e+00	96.4
WP_000333503.1\|3134284_3134440_-\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	9.7e-22	96.1
WP_042028455.1\|3134448_3134823_-\|tail	tail protein	A0A0A7NPZ0	Enterobacteria_phage	1.5e-36	73.2
WP_000290462.1\|3134878_3135391_-\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	1.5e-90	97.1
WP_000005406.1\|3135390_3136575_-\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	1.4e-224	98.7
WP_096057931.1\|3136732_3137842_+	phage late control D family protein	A0A0A7NQ97	Enterobacteria_phage	2.4e-194	94.3
WP_001057124.1\|3138036_3138702_+	hypothetical protein	NA	NA	NA	NA
WP_000488101.1\|3138851_3139112_+	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_000078911.1\|3139302_3139443_+	Hok/Gef family protein	A0A0A7NPZ4	Enterobacteria_phage	4.5e-18	97.8
WP_000886683.1\|3139745_3141038_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.5e-94	48.2
3139704:3139723	attR	NA	NA	NA	NA
WP_000067755.1\|3141128_3142472_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	2.1e-80	40.8
WP_001295343.1\|3142482_3143094_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_019843100.1\|3143252_3147398_-	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	1.2e-86	48.7
WP_000228473.1\|3147532_3148027_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_000537432.1\|3148571_3149537_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	1.1e-62	44.6
WP_001043584.1\|3149659_3151426_+	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	W8CYL7	Bacillus_phage	4.1e-23	24.3
WP_001202145.1\|3151426_3153148_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	W8CYL7	Bacillus_phage	9.9e-22	25.3
WP_001241678.1\|3153189_3153894_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|3154178_3154397_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_000934041.1\|3155258_3157535_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.9e-166	42.5
WP_000520781.1\|3157565_3157886_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.6e-13	44.4

DBSCAN-SWA_8

3872062 : 3948973

Ralstonia_phage(11.11%)

transposase,tRNA,plate,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000420957.1\|3872062_3873199_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_000425547.1\|3873479_3873878_-	hypothetical protein	NA	NA	NA	NA
WP_000981126.1\|3873878_3874127_-	hypothetical protein	NA	NA	NA	NA
WP_001605072.1\|3878185_3878635_-	hypothetical protein	NA	NA	NA	NA
WP_001605069.1\|3882361_3884470_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	1.8e-25	24.8
WP_001142958.1\|3884679_3885198_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_000037390.1\|3885894_3886395_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_000718847.1\|3886429_3886636_+	hypothetical protein	NA	NA	NA	NA
WP_000056997.1\|3886704_3888180_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_000611735.1\|3888186_3888600_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_000393830.1\|3888603_3890454_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_000348802.1\|3890417_3891500_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_001113718.1\|3891524_3892805_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_001080149.1\|3892801_3893326_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_000246418.1\|3893328_3894660_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_000343291.1\|3894664_3895426_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_000614408.1\|3895434_3898200_+	type VI secretion system ATPase TssH	A0A1C3S747	Escherichia_phage	1.0e-81	30.9
WP_000088865.1\|3898196_3898940_+	type VI secretion system-associated protein TagO	NA	NA	NA	NA
WP_001240537.1\|3898944_3900357_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_122987793.1\|3900465_3903900_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_001087587.1\|3903910_3905263_+	membrane protein	NA	NA	NA	NA
WP_000002621.1\|3905286_3905769_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_024186579.1\|3905996_3906728_+	hypothetical protein	NA	NA	NA	NA
WP_001236629.1\|3906737_3907205_+	hypothetical protein	NA	NA	NA	NA
WP_001086162.1\|3907353_3908139_-	hypothetical protein	NA	NA	NA	NA
WP_024185250.1\|3908674_3909406_-	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	1.5e-40	39.9
WP_000917883.1\|3909470_3909938_+	ribonuclease HI	J9Q745	Salmonella_phage	1.0e-50	58.7
WP_001295200.1\|3909934_3910657_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_001052732.1\|3910690_3911446_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
WP_000644685.1\|3911517_3912876_+	murein transglycosylase D	A0A2H4J9N7	uncultured_Caudovirales_phage	5.8e-09	36.0
WP_000211700.1\|3912922_3913693_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_001230983.1\|3913770_3914571_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_000648583.1\|3914811_3915726_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000997027.1\|3915722_3916526_-	2,5-didehydrogluconate reductase DkgB	A0A1V0SDE7	Indivirus	7.1e-39	36.2
WP_001140178.1\|3922285_3922858_-	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA
WP_000593994.1\|3923045_3924077_+	methionine ABC transporter ATP-binding protein MetN	G9BWD6	Planktothrix_phage	7.2e-36	40.2
WP_001294600.1\|3924069_3924723_+	methionine ABC transporter permease MetI	NA	NA	NA	NA
WP_000874224.1\|3924762_3925578_+	methionine ABC transporter substrate-binding lipoprotein MetQ	NA	NA	NA	NA
WP_001202329.1\|3925695_3926100_+	Rcs stress response system protein RcsF	NA	NA	NA	NA
WP_000093980.1\|3926096_3926804_+\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_001260707.1\|3926914_3928633_+\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_001469015.1\|3928685_3929510_+	YaeF family permuted papain-like enzyme	NA	NA	NA	NA
WP_000239194.1\|3929539_3930250_-	envelope stress response activation lipoprotein NlpE	NA	NA	NA	NA
WP_000635545.1\|3930263_3930686_-\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_001185309.1\|3930682_3931228_-	YaeQ family protein	NA	NA	NA	NA
WP_000417058.1\|3931393_3931594_+	YaeP family protein	NA	NA	NA	NA
WP_000062311.1\|3931580_3931841_+	Rho-binding antiterminator	NA	NA	NA	NA
WP_000176528.1\|3931889_3933188_-\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_000901098.1\|3933252_3933642_-	VOC family protein	NA	NA	NA	NA
WP_001020990.1\|3933698_3935840_-	lysine decarboxylase LdcC	NA	NA	NA	NA
WP_000055746.1\|3935938_3936898_-	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA
WP_001294757.1\|3936910_3940393_-	DNA polymerase III subunit alpha	Q8W6C3	Saccharomonospora_phage	2.2e-209	36.9
WP_000569428.1\|3940429_3941026_-	ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	6.7e-26	39.5
WP_000139686.1\|3941022_3942171_-	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_000565966.1\|3942170_3942959_-	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_000210739.1\|3942962_3943418_-	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_001139287.1\|3943522_3944548_-	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_000758956.1\|3944551_3945037_-	molecular chaperone Skp	NA	NA	NA	NA
WP_001240896.1\|3945158_3947591_-	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_001295561.1\|3947620_3948973_-\|protease	sigma E protease regulator RseP	NA	NA	NA	NA

DBSCAN-SWA_9

4292197 : 4361200

Vibrio_phage(18.75%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000998019.1\|4292197_4293583_+\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	3.4e-259	89.3
WP_000823243.1\|4293821_4295180_-	esterase-like activity of phytase family protein	NA	NA	NA	NA
WP_000937727.1\|4295558_4295768_+	hypothetical protein	A0A0N7BTS3	Escherichia_phage	5.9e-06	96.0
WP_000555341.1\|4295930_4296188_-	hypothetical protein	NA	NA	NA	NA
WP_001283626.1\|4297937_4298459_+	RNA polymerase sigma factor FecI	NA	NA	NA	NA
WP_001068913.1\|4298455_4299409_+	fec operon regulator FecR	NA	NA	NA	NA
WP_000188262.1\|4299495_4301820_+	Fe(3+) dicitrate transport protein FecA	NA	NA	NA	NA
WP_000879164.1\|4301864_4302767_+	Fe(3+) dicitrate ABC transporter substrate-binding protein FecB	NA	NA	NA	NA
WP_000125187.1\|4302763_4303762_+	iron-dicitrate ABC transporter permease FecC	NA	NA	NA	NA
WP_000684855.1\|4303758_4304715_+	Fe(3+) dicitrate ABC transporter permease subunit FecD	A0A2H4IY97	uncultured_Caudovirales_phage	2.4e-17	26.1
WP_000175457.1\|4304715_4305483_+	Fe(3+) dicitrate ABC transporter ATP-binding protein FecE	G3M9Y6	Bacillus_virus	6.4e-13	24.8
WP_000177057.1\|4306039_4306297_-	hypothetical protein	NA	NA	NA	NA
WP_085947616.1\|4307230_4308386_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	3.6e-68	45.1
WP_001293436.1\|4308540_4310538_+	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	7.4e-21	25.9
WP_000625671.1\|4310600_4311014_+	DUF2254 domain-containing protein	NA	NA	NA	NA
WP_085948656.1\|4310948_4312116_-\|transposase	IS3-like element IS911 family transposase	Q716C2	Shigella_phage	1.8e-184	99.3
WP_032147325.1\|4312429_4312687_+	hypothetical protein	NA	NA	NA	NA
WP_000594405.1\|4312739_4312865_-	hypothetical protein	NA	NA	NA	NA
WP_000611568.1\|4312907_4314026_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_000179691.1\|4314037_4315255_-	MFS transporter	NA	NA	NA	NA
WP_000547193.1\|4315881_4317210_+\|transposase	IS4-like element IS4 family transposase	NA	NA	NA	NA
WP_001318460.1\|4321767_4322787_+	NADPH-dependent aldehyde reductase Ahr	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	1.4e-44	30.7
WP_000896738.1\|4322790_4323354_-	gluconokinase	NA	NA	NA	NA
WP_001197411.1\|4323570_4324602_+	L-idonate 5-dehydrogenase	NA	NA	NA	NA
WP_000998695.1\|4324625_4325390_+	gluconate 5-dehydrogenase	NA	NA	NA	NA
WP_001128347.1\|4325452_4326772_+	gnt-II system L-idonate transporter	NA	NA	NA	NA
WP_001309159.1\|4326838_4327837_+	DNA-binding transcriptional regulator IdnR	NA	NA	NA	NA
WP_001294573.1\|4327914_4329417_+	DUF853 domain-containing protein	A0A248XCZ8	Klebsiella_phage	4.6e-84	44.2
WP_001295681.1\|4329577_4330660_-	LPS export ABC transporter permease LptG	NA	NA	NA	NA
WP_000584114.1\|4330659_4331760_-	LPS export ABC transporter permease LptF	NA	NA	NA	NA
WP_000397144.1\|4332026_4333538_+	leucyl aminopeptidase	Q6GYZ8	Mycoplasma_phage	6.0e-47	38.0
WP_000786399.1\|4333891_4334335_+	DNA polymerase III subunit chi	NA	NA	NA	NA
WP_000416387.1\|4334334_4337190_+\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	1.3e-140	36.7
WP_000079655.1\|4337245_4338442_-	DUF898 domain-containing protein	NA	NA	NA	NA
WP_001059412.1\|4338634_4339138_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000002953.1\|4339183_4339600_-	ribonuclease E inhibitor RraB	NA	NA	NA	NA
WP_000012907.1\|4339761_4340766_+	ornithine carbamoyltransferase	NA	NA	NA	NA
WP_000036448.1\|4340821_4342417_-	hypothetical protein	NA	NA	NA	NA
WP_001326836.1\|4342539_4342992_-	YhcH/YjgK/YiaL family protein	NA	NA	NA	NA
WP_000256681.1\|4343136_4343730_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_000500687.1\|4343800_4344514_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_000230281.1\|4344644_4345040_+	RidA family protein	NA	NA	NA	NA
WP_001296693.1\|4345320_4345455_+	pyr operon leader peptide	NA	NA	NA	NA
WP_000013046.1\|4345458_4346394_+	aspartate carbamoyltransferase	M1HWF9	Paramecium_bursaria_Chlorella_virus	2.9e-52	40.2
WP_000148581.1\|4346406_4346868_+	aspartate carbamoyltransferase regulatory subunit	NA	NA	NA	NA
WP_000047539.1\|4346940_4347327_+	2-iminobutanoate/2-iminopropanoate deaminase	NA	NA	NA	NA
WP_000399660.1\|4347604_4348585_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_000471889.1\|4348812_4351509_-	magnesium-translocating P-type ATPase	M1HLC0	Paramecium_bursaria_Chlorella_virus	9.0e-46	27.4
WP_001387276.1\|4351649_4351703_-	mgtA regulatory leader peptide MgtL	NA	NA	NA	NA
WP_001181312.1\|4351887_4352835_+	HTH-type transcriptional regulator TreR	C6ZCU4	Enterobacteria_phage	7.9e-13	21.8
WP_001299664.1\|4352953_4354375_+	PTS trehalose transporter subunit IIBC	NA	NA	NA	NA
WP_001366536.1\|4354424_4356080_+	alpha,alpha-phosphotrehalase	NA	NA	NA	NA
WP_000187791.1\|4356473_4358612_+	anaerobic ribonucleoside-triphosphate reductase	A0A2I7QNQ7	Vibrio_phage	9.1e-267	64.6
WP_001106226.1\|4358769_4359234_+	anaerobic ribonucleoside-triphosphate reductase-activating protein	H6WXC9	Vibrio_phage	2.5e-52	59.7
WP_001232255.1\|4359278_4359665_-	cytochrome b562	NA	NA	NA	NA
WP_001162171.1\|4359847_4361200_-\|protease	metalloprotease PmbA	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP023386

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection