CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP023353	Escherichia coli strain 746 chromosome, complete genome	5 crisprs	csa3,PD-DExK,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas14j,DinG,c2c9_V-U4	23	7
NZ_CP023354	Escherichia coli strain 746 plasmid p62, complete sequence	0 crisprs	RT	0	0
NZ_CP023355	Escherichia coli strain 746 plasmid p72, complete sequence	0 crisprs	NA	0	0
NZ_CP023356	Escherichia coli strain 746 plasmid p95, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP023353_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023353_1

1197448-1198696

Orphan

I-E

Consensus_repeat	Method
GAGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

20 spacers

The CRISPR arrays of NZ_CP023353_1

>merge|NZ_CP023353|1|1197448-1198696|PILER-CR,CRISPRCasFinder,CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCGTTGGGGCTGGGGTTCGGTAATCAGATTATTGAGAGTTCCCCGCGCCAGCGGGGATAAACCGAGTAAGCCGGTTGATTATCGCCAGGGATATTAGAGTTCCCCGCGCCAGCGGGGATAAACCGGGAAAATAAACGCGTTATTCCTTGATGGGTGCGAGTTCCCCGCGCCAGCGGGGATAAACCGAGCAACAGGTATTTCATATGGCCTGCCGTGCTGAGTTCCCCGCGCCAGCGGGGATAAACCGGCCAGCGGCGCTGAGTACGACGACCTGATTAAGAGTTCCCCGCGCCAGCGGGGATAAACCGTCAATACAACAGCAATGCTGGAGCTGGAAAAAGAGTTCCCCGCGCCAGCGGGGATAAACCGTGGTGGGATAGCTGCTCTGCCAGCGTGTCGCGGAGTTCCCCGCGCCAGCGGGGATAAACCGTGGGCGCAGCTCATGTATTCCAATAAGGATATGAGTTCCCCGCGCCAGCGGGGATAAACCGAGATTCGCGCAATGTACGGTAAAGACAGCACCGAGTTCCCCGCGCCAGCGGGGATAAACCGGGATTCTGCACTCTTTGATGTAATGGTACTGCGAGTTCCCCGCGCCAGCGGGGATAAACCGCCATTCTTGTTGTCGTTCATCAAGCGCAGGGGGAGTTTCCCGCGCCAGCGGGGATAAACCGTTTGTTTTGATGATTTATCAGTATATGAATTGGAGTTCCCCGCGCCAGCGGGGATAAACCGATTTTTGCGCGGCCTGCATGAAACCAGTGGCAAAGTTCCCCGCGCCAGCGGGGATAAACCGGTACCGTTGAGCAATGGTGGGTAAATGGTGCTGAGTTCCCCGCGCCAGCGGGGATAAACCGATTTAGATACGGCACACAGGAATGCGCTGGATGAGTTCCCCGCGCCAGCGGGGATAAACCGCATGGGAGTCCAGATTACAAATTCCAGAATGGGAGTTCCCCGCGCCAGCGGGGATAAACCGCGCCAGTCTGAGGTTTTCCGGTCATACATCGTGAGTTCCCCGCGCCAGCGGGGATAAACCGACCGTTGCTACACATATGATCAGGCATGTGCCGAGTTCCCCGCGCCAGCGGGGATAAACCGGACGATGAGACGCCCTGGTGTGCCGCGTTCGTGAGTTCCCCGCGCCAGCGGGGATAAACCGCGTTTAGCTCCGCAATGTTGGATATCACTGATGAGTTCCCCGCACCAGCGGGAATAAACCA

>NZ_CP023353|1|1|1197448-1198635|PILER-CR
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTGGGGCTGGGGTTCGGTAATCAGATTATTGA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGTAAGCCGGTTGATTATCGCCAGGGATATTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGAAAATAAACGCGTTATTCCTTGATGGGTGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGCAACAGGTATTTCATATGGCCTGCCGTGCT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GCCAGCGGCGCTGAGTACGACGACCTGATTAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TCAATACAACAGCAATGCTGGAGCTGGAAAAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TGGTGGGATAGCTGCTCTGCCAGCGTGTCGCG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TGGGCGCAGCTCATGTATTCCAATAAGGATAT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGATTCGCGCAATGTACGGTAAAGACAGCACC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGATTCTGCACTCTTTGATGTAATGGTACTGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCATTCTTGTTGTCGTTCATCAAGCGCAGGGG
GAGTTTCCCGCGCCAGCGGGGATAAACCG	TTTGTTTTGATGATTTATCAGTATATGAATTG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATTTTTGCGCGGCCTGCATGAAACCAGTGGCA
AAGTTCCCCGCGCCAGCGGGGATAAACCG	GTACCGTTGAGCAATGGTGGGTAAATGGTGCT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATTTAGATACGGCACACAGGAATGCGCTGGAT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CATGGGAGTCCAGATTACAAATTCCAGAATGG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGCCAGTCTGAGGTTTTCCGGTCATACATCGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ACCGTTGCTACACATATGATCAGGCATGTGCC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GACGATGAGACGCCCTGGTGTGCCGCGTTCGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG

>NZ_CP023353|1|1|1197448-1198696|CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTGGGGCTGGGGTTCGGTAATCAGATTATTGA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGTAAGCCGGTTGATTATCGCCAGGGATATTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGAAAATAAACGCGTTATTCCTTGATGGGTGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGCAACAGGTATTTCATATGGCCTGCCGTGCT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GCCAGCGGCGCTGAGTACGACGACCTGATTAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TCAATACAACAGCAATGCTGGAGCTGGAAAAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TGGTGGGATAGCTGCTCTGCCAGCGTGTCGCG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TGGGCGCAGCTCATGTATTCCAATAAGGATAT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGATTCGCGCAATGTACGGTAAAGACAGCACC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGATTCTGCACTCTTTGATGTAATGGTACTGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCATTCTTGTTGTCGTTCATCAAGCGCAGGGG
GAGTTTCCCGCGCCAGCGGGGATAAACCG	TTTGTTTTGATGATTTATCAGTATATGAATTG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATTTTTGCGCGGCCTGCATGAAACCAGTGGCA
AAGTTCCCCGCGCCAGCGGGGATAAACCG	GTACCGTTGAGCAATGGTGGGTAAATGGTGCT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATTTAGATACGGCACACAGGAATGCGCTGGAT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CATGGGAGTCCAGATTACAAATTCCAGAATGG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGCCAGTCTGAGGTTTTCCGGTCATACATCGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ACCGTTGCTACACATATGATCAGGCATGTGCC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GACGATGAGACGCCCTGGTGTGCCGCGTTCGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTTAGCTCCGCAATGTTGGATATCACTGAT
GAGTTCCCCGCACCAGCGGGAATAAACCA

>NZ_CP023353|1|1|1197448-1198696|CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTGGGGCTGGGGTTCGGTAATCAGATTATTGA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGTAAGCCGGTTGATTATCGCCAGGGATATTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGAAAATAAACGCGTTATTCCTTGATGGGTGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGCAACAGGTATTTCATATGGCCTGCCGTGCT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GCCAGCGGCGCTGAGTACGACGACCTGATTAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TCAATACAACAGCAATGCTGGAGCTGGAAAAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TGGTGGGATAGCTGCTCTGCCAGCGTGTCGCG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TGGGCGCAGCTCATGTATTCCAATAAGGATAT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGATTCGCGCAATGTACGGTAAAGACAGCACC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGATTCTGCACTCTTTGATGTAATGGTACTGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCATTCTTGTTGTCGTTCATCAAGCGCAGGGG
GAGTTTCCCGCGCCAGCGGGGATAAACCG	TTTGTTTTGATGATTTATCAGTATATGAATTG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATTTTTGCGCGGCCTGCATGAAACCAGTGGCA
AAGTTCCCCGCGCCAGCGGGGATAAACCG	GTACCGTTGAGCAATGGTGGGTAAATGGTGCT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATTTAGATACGGCACACAGGAATGCGCTGGAT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CATGGGAGTCCAGATTACAAATTCCAGAATGG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGCCAGTCTGAGGTTTTCCGGTCATACATCGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ACCGTTGCTACACATATGATCAGGCATGTGCC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GACGATGAGACGCCCTGGTGTGCCGCGTTCGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTTAGCTCCGCAATGTTGGATATCACTGAT
GAGTTCCCCGCACCAGCGGGAATAAACCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023353.1\|WP_001071643.1\|1191169_1191961_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP023353.1\|WP_000109536.1\|1209964_1210225_-\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|225289
NZ_CP023353.1\|WP_001199973.1\|1196437_1197109_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP023353.1\|WP_000254738.1\|1190762_1191098_+\|endoribonuclease-MazF	unknown	unknown	gnl\|CDD\|182138
NZ_CP023353.1\|WP_001521165.1\|1206929_1207790_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
NZ_CP023353.1\|WP_000210878.1\|1192188_1193826_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP023353.1\|WP_106106683.1\|1207889_1209238_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP023353.1\|WP_000186450.1\|1184040_1186797_-\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NZ_CP023353.1\|WP_001098106.1\|1204838_1206176_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP023353.1\|WP_000039721.1\|1199333_1200812_-\|sugar-kinase	unknown	unknown	gnl\|CDD\|212662
NZ_CP023353.1\|WP_001551563.1\|1186853_1188155_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP023353.1\|WP_001521167.1\|1206153_1206933_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
NZ_CP023353.1\|WP_001551562.1\|1188202_1190437_+\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP023353.1\|WP_001551561.1\|1195271_1196144_-\|YgcG-family-protein	unknown	unknown	gnl\|CDD\|224429
NZ_CP023353.1\|WP_000059301.1\|1203290_1204745_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_CP023353.1\|WP_001130266.1\|1209372_1209948_-\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|224865
NZ_CP023353.1\|WP_000036723.1\|1193913_1195212_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP023353.1\|WP_001551560.1\|1200838_1202116_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NZ_CP023353.1\|WP_000581937.1\|1190514_1190763_+\|type-II-toxin-antitoxin-system-antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
NZ_CP023353.1\|WP_064770406.1\|1202435_1203221_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187605

Protein	Function_ID	Function_description	E-value
NZ_CP023353.1\|WP_001071643.1\|1191169_1191961_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	9.36315e-160
NZ_CP023353.1\|WP_000109536.1\|1209964_1210225_-\|ferredoxin-family-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	4.39108e-42
NZ_CP023353.1\|WP_001199973.1\|1196437_1197109_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.98248e-155
NZ_CP023353.1\|WP_000254738.1\|1190762_1191098_+\|endoribonuclease-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	1.17475e-74
NZ_CP023353.1\|WP_001521165.1\|1206929_1207790_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	8.34461e-89
NZ_CP023353.1\|WP_000210878.1\|1192188_1193826_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP023353.1\|WP_106106683.1\|1207889_1209238_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	8.20133e-53
NZ_CP023353.1\|WP_000186450.1\|1184040_1186797_-\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NZ_CP023353.1\|WP_001098106.1\|1204838_1206176_+\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.1165e-50
NZ_CP023353.1\|WP_000039721.1\|1199333_1200812_-\|sugar-kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	2.76431e-108
NZ_CP023353.1\|WP_001551563.1\|1186853_1188155_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP023353.1\|WP_001521167.1\|1206153_1206933_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	8.81851e-61
NZ_CP023353.1\|WP_001551562.1\|1188202_1190437_+\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP023353.1\|WP_001551561.1\|1195271_1196144_-\|YgcG-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	9.30455e-97
NZ_CP023353.1\|WP_000059301.1\|1203290_1204745_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	1.6361e-82
NZ_CP023353.1\|WP_001130266.1\|1209372_1209948_-\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	5.83077e-88
NZ_CP023353.1\|WP_000036723.1\|1193913_1195212_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP023353.1\|WP_001551560.1\|1200838_1202116_-\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	7.75283e-29
NZ_CP023353.1\|WP_000581937.1\|1190514_1190763_+\|type-II-toxin-antitoxin-system-antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48
NZ_CP023353.1\|WP_064770406.1\|1202435_1203221_+\|SDR-family-oxidoreductase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.81052e-137

>NZ_CP023353.1|WP_001199973.1|1196437_1197109_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP023353.1|WP_001551561.1|1195271_1196144_-|YgcG-family-protein
MRYFILIFTFVCSFVAAQPTIVPSLQQQVTDLTSSLNSQEKKELTYKLESIFNNTQVQIAVLIVPTTKDETIEKYATRVFDNWRLGDAKRNDGILIIVAWSDRTVRIQVGYGLEEKVTDALAGDIIRSNMIPAFKQQKLAQGLELAINALNNQLTSQHQYPANPSEIESASSSDHYYFAIFWVFAVMFFPFWFFHQGSNFCRACKSSVCISAIYLLDLFLFSDKTFSSAVFFFFFTFTTIMVFTCLCVLQKKASGRSYHSDNSGSGGGSSGGGFSGGGGSSGGGGASGRW
>NZ_CP023353.1|WP_000036723.1|1193913_1195212_+|phosphopyruvate-hydratase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP023353.1|WP_000210878.1|1192188_1193826_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>NZ_CP023353.1|WP_001071643.1|1191169_1191961_+|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVIDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>NZ_CP023353.1|WP_000254738.1|1190762_1191098_+|endoribonuclease-MazF
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>NZ_CP023353.1|WP_000581937.1|1190514_1190763_+|type-II-toxin-antitoxin-system-antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>NZ_CP023353.1|WP_001551562.1|1188202_1190437_+|GTP-diphosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKISGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>NZ_CP023353.1|WP_001551563.1|1186853_1188155_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKALFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASEDLQQRSKSAALARLMKHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVAGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVACALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNDLHNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK
>NZ_CP023353.1|WP_000186450.1|1184040_1186797_-|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSTEYGMSLQNRESIGQLISVLHRRHSDIVRAISVYDENNRLFVTSNFHLDPSSMQLGSNVPFPRQLTVTRDGDIMILRTPIISESYSPDESPSSDAKNSQNMLGYIALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREPLTMQHERLAKAVSMTDFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHHKQNTLLPVTDESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNLLLRYKPGSGISSRVVTPEVNEIVVNPNATLDWQLALRQAAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGENPEGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELLELLDEMDNVAREASKILG
>NZ_CP023353.1|WP_000039721.1|1199333_1200812_-|sugar-kinase
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKTWAWSEDAAVMEKFNIPRHMLFDVQMPGTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKLLPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDAKAQDLSPEDLLNKKASCVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDKMVRVKDIFMPVESNAKRYNAMNKGIFKELTKHTDVILKKSYEVMHGELGNADSIQSWSNA
>NZ_CP023353.1|WP_001551560.1|1200838_1202116_-|MFS-transporter
MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPIAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSASLKTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSVLGLLALTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGYWQDTLPAAEAYRNMWLMGMAALAMVIVFTFLLFQKIRTADSAPAMASSK
>NZ_CP023353.1|WP_064770406.1|1202435_1203221_+|SDR-family-oxidoreductase
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGETKEMIEKQGVEVDFMQVDITAEGAPQKIIAACCERFGTVDILINNAGICKLNKVLNFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANHWGDTQDLMGAAVFLASPASNYVNGHLLVVDGGYLVR
>NZ_CP023353.1|WP_000059301.1|1203290_1204745_+|FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWTLLEGLKKQFDPNGIMNTGTIYPIEK
>NZ_CP023353.1|WP_001098106.1|1204838_1206176_+|MFS-transporter
MNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISESPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVATATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLAAVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>NZ_CP023353.1|WP_001521167.1|1206153_1206933_+|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNILLAFKAEPDAGMLAEKEWQAAAQGNSGPDVSLLRSLLGADEQAAAALLLAQRKNGTSMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEFVARHIAEWQYQNPLELIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDAPFITLEQRTENGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAVGKAAIIRKTVAAESPAMQCLQLARAEQQRGATLIDGQTVAEKAQKLWQDYLRQRMQP
>NZ_CP023353.1|WP_001521165.1|1206929_1207790_+|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNIAIVTINQENAATASWQAAQDFSGCTLAHWKIEPQPAVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHWGNALTATLQTEKRPLCLSLARQAGADKNATLPSGMQQLNIVPGALPDWLVSIENLKNVTRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEALVTNIHAECQ
>NZ_CP023353.1|WP_106106683.1|1207889_1209238_-|IS3-family-transposase
MKHSFEVKLAAVNHYLAGHAGIISTAKLFQLSHTSLSHWINLFLLHGPRALDCRHKRSYSPEDKLCVVLYALGHSESLPRVAARFNIPSHNTVKNWIKGYRKSGNEAFIRRRKEKSMTRSDDTHENEANMTPEEMKNELRYLRAENAYLKAMQEHLLEKKPPGAGEKTKVIRSLRCGHCQSDLLKAAGLARSTLYYQLSLQKAKDKYADVKQLIASIFHEHRGCYGYRRIHCELQKRGLKFSGKTVRKLMQQLGLKSPVRLKKYRSYRGNMGLAAENILQRQFKAEAPCEKWVTDITEFRAGGQKLYLSPILDLFNGEIVAWETACRPTEELVKRMLNKGLESLAEGEKPLLHSDQGWHYRIKSYQSDLADKGLVQSMSRKGNCLDNAVMENFFGHLKEEIYYRRDYRNVEELENAVNEYITYWNQKRIKLSLGGLSPVEYRTEHQKAG
>NZ_CP023353.1|WP_001130266.1|1209372_1209948_-|glycerol-3-phosphate-responsive-antiterminator
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISNIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>NZ_CP023353.1|WP_000109536.1|1209964_1210225_-|ferredoxin-family-protein
MSVARNLWRVADAPHIVPADSVERQTVQRLINACPAGLFSLTPEGDLRVDYRGCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG

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Crispr_ID: NZ_CP023353_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023353_2

1225835-1226473

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGTCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGTCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGTCAGCGGGGATAAACCG	CRT

10 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP023353_2

>merge|NZ_CP023353|2|1225835-1226473|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGTCAGCGGGGATAAACCGACAATCAGATCACGATCGATGCCTCGCGTGAGGTGTTCCCCGCGTCAGCGGGGATAAACCGATTTTCGCAGCGGGTAACCGCGCCCGGCGATCGTGTTCCCCGCGTCAGCGGGGATAAACCGCTCGTACGCCGTCTCACTCCGCGTGAGTGTGAGTGTTCCCCGCGTCAGCGGGGATAAACCGGGATCAAATCTTTTGAGAGCAATTAAGGGGGAGTGTTCCCCGCGTCAGCGGGGATAAACCGTTTATGTGGAGTATCAGTGCCTGGGTGGAAAGGTGTTCCCCGCGTCAGCGGGGATAAACCGTGGGGCTGAGCATGGCTAAACAACCGAGGCGCGTGTTCCCCGCGTCAGCGGGGATAAACCGGTCAACTGGCACCACAGGATGATGGCGGCGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGGTCGACCGACTGGAGGCGGAGATTGTCGGGTGTTCCCCGCGCCAGCGGGGATAAACCGTGTTGTTTTTCTGCCGGATTAACGCGGTGCGAGTGTTCCCCGCGCCAGCGGGGATAAACCGCCAGCGAAGGACTTGCTCGTGTGGTTAAAGCCGTGTTCCCCGCGTCAGCGGGGATAAACCG

>NZ_CP023353|2|2|1225835-1226473|PILER-CR
GTGTTCCCCGCGTCAGCGGGGATAAACCG	ACAATCAGATCACGATCGATGCCTCGCGTGAG
GTGTTCCCCGCGTCAGCGGGGATAAACCG	ATTTTCGCAGCGGGTAACCGCGCCCGGCGATC
GTGTTCCCCGCGTCAGCGGGGATAAACCG	CTCGTACGCCGTCTCACTCCGCGTGAGTGTGA
GTGTTCCCCGCGTCAGCGGGGATAAACCG	GGATCAAATCTTTTGAGAGCAATTAAGGGGGA
GTGTTCCCCGCGTCAGCGGGGATAAACCG	TTTATGTGGAGTATCAGTGCCTGGGTGGAAAG
GTGTTCCCCGCGTCAGCGGGGATAAACCG	TGGGGCTGAGCATGGCTAAACAACCGAGGCGC
GTGTTCCCCGCGTCAGCGGGGATAAACCG	GTCAACTGGCACCACAGGATGATGGCGGCGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGTCGACCGACTGGAGGCGGAGATTGTCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGTTGTTTTTCTGCCGGATTAACGCGGTGCGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGCGAAGGACTTGCTCGTGTGGTTAAAGCC
GTGTTCCCCGCGTCAGCGGGGATAAACCG

>NZ_CP023353|2|2|1225835-1226473|CRISPRCasFinder
GTGTTCCCCGCGTCAGCGGGGATAAACCG	ACAATCAGATCACGATCGATGCCTCGCGTGAG
GTGTTCCCCGCGTCAGCGGGGATAAACCG	ATTTTCGCAGCGGGTAACCGCGCCCGGCGATC
GTGTTCCCCGCGTCAGCGGGGATAAACCG	CTCGTACGCCGTCTCACTCCGCGTGAGTGTGA
GTGTTCCCCGCGTCAGCGGGGATAAACCG	GGATCAAATCTTTTGAGAGCAATTAAGGGGGA
GTGTTCCCCGCGTCAGCGGGGATAAACCG	TTTATGTGGAGTATCAGTGCCTGGGTGGAAAG
GTGTTCCCCGCGTCAGCGGGGATAAACCG	TGGGGCTGAGCATGGCTAAACAACCGAGGCGC
GTGTTCCCCGCGTCAGCGGGGATAAACCG	GTCAACTGGCACCACAGGATGATGGCGGCGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGTCGACCGACTGGAGGCGGAGATTGTCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGTTGTTTTTCTGCCGGATTAACGCGGTGCGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGCGAAGGACTTGCTCGTGTGGTTAAAGCC
GTGTTCCCCGCGTCAGCGGGGATAAACCG

>NZ_CP023353|2|2|1225835-1226473|CRT
GTGTTCCCCGCGTCAGCGGGGATAAACCG	ACAATCAGATCACGATCGATGCCTCGCGTGAG
GTGTTCCCCGCGTCAGCGGGGATAAACCG	ATTTTCGCAGCGGGTAACCGCGCCCGGCGATC
GTGTTCCCCGCGTCAGCGGGGATAAACCG	CTCGTACGCCGTCTCACTCCGCGTGAGTGTGA
GTGTTCCCCGCGTCAGCGGGGATAAACCG	GGATCAAATCTTTTGAGAGCAATTAAGGGGGA
GTGTTCCCCGCGTCAGCGGGGATAAACCG	TTTATGTGGAGTATCAGTGCCTGGGTGGAAAG
GTGTTCCCCGCGTCAGCGGGGATAAACCG	TGGGGCTGAGCATGGCTAAACAACCGAGGCGC
GTGTTCCCCGCGTCAGCGGGGATAAACCG	GTCAACTGGCACCACAGGATGATGGCGGCGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGTCGACCGACTGGAGGCGGAGATTGTCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGTTGTTTTTCTGCCGGATTAACGCGGTGCGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGCGAAGGACTTGCTCGTGTGGTTAAAGCC
GTGTTCCCCGCGTCAGCGGGGATAAACCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023353.1\|WP_000372108.1\|1227843_1228752_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP023353.1\|WP_000956458.1\|1216829_1216982_+\|type-I-toxin-antitoxin-system-Hok-family-toxin	unknown	unknown	gnl\|CDD\|366840
NZ_CP023353.1\|WP_001551551.1\|1226554_1227592_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP023353.1\|WP_000206445.1\|1222083_1223139_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP023353.1\|WP_000568924.1\|1232868_1233918_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP023353.1\|WP_000029331.1\|1221532_1222069_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP023353.1\|WP_001551549.1\|1230835_1231159_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP023353.1\|WP_000144858.1\|1224524_1225448_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP023353.1\|WP_001295182.1\|1233898_1234660_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP023353.1\|WP_001551553.1\|1223149_1223896_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP023353.1\|WP_001219242.1\|1232392_1232872_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP023353.1\|WP_001551550.1\|1228753_1230181_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP023353.1\|WP_000517476.1\|1231352_1231664_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP023353.1\|WP_000246131.1\|1231682_1232393_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP023353.1\|WP_000281438.1\|1223877_1224528_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP023353.1\|WP_001551555.1\|1217176_1219876_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP023353.1\|WP_000063172.1\|1225444_1225738_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP023353.1\|WP_001521160.1\|1215830_1216565_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP023353.1\|WP_001596101.1\|1219973_1221536_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP023353.1\|WP_001173673.1\|1230180_1230786_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661

Protein	Function_ID	Function_description	E-value
NZ_CP023353.1\|WP_000372108.1\|1227843_1228752_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP023353.1\|WP_000956458.1\|1216829_1216982_+\|type-I-toxin-antitoxin-system-Hok-family-toxin	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	8.32243e-12
NZ_CP023353.1\|WP_001551551.1\|1226554_1227592_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP023353.1\|WP_000206445.1\|1222083_1223139_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	2.45802e-155
NZ_CP023353.1\|WP_000568924.1\|1232868_1233918_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP023353.1\|WP_000029331.1\|1221532_1222069_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	4.72866e-28
NZ_CP023353.1\|WP_001551549.1\|1230835_1231159_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.41878e-52
NZ_CP023353.1\|WP_000144858.1\|1224524_1225448_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.11358e-157
NZ_CP023353.1\|WP_001295182.1\|1233898_1234660_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
NZ_CP023353.1\|WP_001551553.1\|1223149_1223896_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	5.14306e-47
NZ_CP023353.1\|WP_001219242.1\|1232392_1232872_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.56248e-104
NZ_CP023353.1\|WP_001551550.1\|1228753_1230181_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP023353.1\|WP_000517476.1\|1231352_1231664_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
NZ_CP023353.1\|WP_000246131.1\|1231682_1232393_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	4.32778e-121
NZ_CP023353.1\|WP_000281438.1\|1223877_1224528_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	3.43159e-91
NZ_CP023353.1\|WP_001551555.1\|1217176_1219876_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP023353.1\|WP_000063172.1\|1225444_1225738_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	2.07297e-64
NZ_CP023353.1\|WP_001521160.1\|1215830_1216565_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	4.91666e-137
NZ_CP023353.1\|WP_001596101.1\|1219973_1221536_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP023353.1\|WP_001173673.1\|1230180_1230786_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.34447e-148

>NZ_CP023353.1|WP_000063172.1|1225444_1225738_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAIWLLEVRAGVYVGDTSKRIREMIWQQISQLAGCGNVVMAWATNTESGFEFQTWGENRRIPVDLDGVRLVSFLPVDNQ
>NZ_CP023353.1|WP_000144858.1|1224524_1225448_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLSPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLAATVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALTEDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRQTYALLAKQYGVKWNGRKYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYDIADIIKFDSVVPKAFEIAARQPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPETLGDSGHRGRGG
>NZ_CP023353.1|WP_000281438.1|1223877_1224528_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTGQLSPAQLLHLVDRGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQERPAESDIFTIECRPFAPELRTGQSLCFNLRANPTICKAGKRHDLLMEAKRQVRGQVEGSDVWLHQQQAALDWLAAQGERSGFTLLDTSVDAYRQQQLRRENSRQLIQFSSVDYTGMLTVTDPGLFLQRLSQGYGKSRAFGCGLMLIKPGAEA
>NZ_CP023353.1|WP_001551553.1|1223149_1223896_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNSHYSLVVCASRNPRWARDYHTVQMPKEVRKARYFSRREELSAPDLLSAIISRRDYYTDAWWMVAVATTPDAPYRLEQLQDGLRHPVFPLYLGRKSHPLALPLAPLLLEGNASDVLRNAYQQYQDSFRELKVSLPKLQDECWWEGEHDGLVASKILRRRDVPLNRQQWLFGERTINQGPWLSKEEPCTSQE
>NZ_CP023353.1|WP_000206445.1|1222083_1223139_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRVSSQSLKRAWRTSALFEQALAGHIGIRSGRIAREAATILIEKGIEEKKAIEWAAKIADYLGKAKNDKKPKDPLTNAETEQLVHISPAEFDAVKALAHQLAEEKRAPKEEDLALLRKDRMAVDIAMFGRMLANKPEFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASEDAGAGHLGETGFGSALFYTYICIDKDLLVENLGGDEALANQTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTEQPRSLAAAFYEPINGTRQLDVAVQRITTLRENMNTVYEQKTECASFDVMNKQGSMKDVLDFICA
>NZ_CP023353.1|WP_000029331.1|1221532_1222069_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVKEEHKATLRKWHEELQEKRGNRASLRRSTTVNDVCLSEGFRSLLMQTHTLWKIEAQEWRFTALALVAAVSANVKAIDERQPFAAQLAAVMSEGRFTRLSAVKTPDDLLRQLRRAVKLLNGSVNLISLAEDIFRWCQESDDLLNHHRRQQRPTEFIRIRWALEYYQAGDADNEQN
>NZ_CP023353.1|WP_001596101.1|1219973_1221536_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNSFSLLTTPWLPVRYKDGTTGKLAPVDLADENVVDIAAPRADLQGAAWQFLLGLLQTSFAPKDQRRWDDIWEDGLEAEKLREALLSLDHAFQFGPDSPSFMQDFEALTGDKVPVASLLPEIPGVQTTKFNKDHFIKHGVTEHLCPQCSALALFSLQLNAPSGGKGYRTGLRGGGPMTTLIELQEYQGNQQTPLWRKLWLNVMPQDEADLPLPKKFDDLIFPWLGPTRTSELAGAVVTHDQVNKLQAYWGMPRRIRIDFNTTTVGNCDICDEQNDALLSLMTTKNYGANYAMWQHPLTPYRVPLKEGGEFYSVKPQPGGLIWRDWLGLIETGKSENNTELPALVVKLFNASSLKQAKVGLWGFGYDFDNMKARCWYEHHFPLLLNKKEGQIPKLRLAAQTASRILSLLRSALKEAWFSDPKGARGDFSFVDIDFWNKTQHRFLRLVRQIEEGQDADELLGKWQKEIWLFARQDFDERVFTNPYEPVDLKRVMTARKKYFTTSAEKQSAKAAREKKQEAAE
>NZ_CP023353.1|WP_001551555.1|1217176_1219876_+|CRISPR-associated-helicase/endonuclease-Cas3
MRKYPLSLLKDKNIVTFFDFWGKTRRGEKDGGDDYHLLCWHSLDVAAMGYLMVKSNCFGLTDYFRQLGFADTEQAAQFFAWLLCWHDTGKFARSFQQLYLHPQLKVPEGARKNYEKISHSTLGYWLWHHYLSEYEELLPSSSLSPRKLKRVMEMWMPMTTGHHGRPPDRIDELDNFLPEDKAAARDFLLEIKVLFPLIEIPAFWDDDEGIELLKQLSWYISATVVLADWTGSSTRFFPRVAQAMDIKDYWQKALVQAQNALTVFPPKAQTAPFTGINTLFPFIEHPTPLQQKVLDLDISQPGPQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLFFGLPTMATANAMYDRLVKTWLAFYSPESRPSLVLAHSARTLMDRFNESLWSGDLVGSEEPDEQAFSQGCAAWFADSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQRDKLVAAFARGAEGQQEAPFLEKDDYPWLTHVTKSDVHSHRVATRKDVERSVSVGWLHSEQECIARIESAVSQGKCIAWIRNSVDDAIKVYRQLLARGVIPASSLSLFHSRFAFSDRQRIETETLARFGKSCSLQRSSQVIVCTQVIEQSVDIDLDEMISDLAPVDLLIQRAGRLQRHIRDINGQLKRDGKDERSPPELLILAPVWDDAPGDEWFGSAMRNSAYVYPDHGRIWLTQRVLREQGAIQMPHAARLLIESVYGEDVVMPEGFARSEQEQVGKYYCDRAMAKKFVLNFRPGYAANINDYLPEKLSTRLAEESVSLWLSTCIAGVVKPYANGAHAWEMSVVRVRRSWWKKHRDEFSLLEGDAFRQWCIEQRQEPEMANVILVTDDESCGYSAMEGLTGKVG
>NZ_CP023353.1|WP_000956458.1|1216829_1216982_+|type-I-toxin-antitoxin-system-Hok-family-toxin
MLTKYALVAIIVLCCTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK
>NZ_CP023353.1|WP_001521160.1|1215830_1216565_+|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRTNLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP023353.1|WP_001551551.1|1226554_1227592_-|aminopeptidase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEVFDKAGIAVLSVEATNWNLGNKDGYQQRAKTAAFPAGTSWHDVRLDNQQHIDKALPGRIERRCRDVIRIMLPLVKELAKAS
>NZ_CP023353.1|WP_000372108.1|1227843_1228752_+|sulfate-adenylyltransferase-subunit-CysD
MDQIRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>NZ_CP023353.1|WP_001551550.1|1228753_1230181_+|sulfate-adenylyltransferase-subunit-CysN
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVGYSEETFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADESLPAVQSASVDVVWMAEQPLSPGQRYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATTAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>NZ_CP023353.1|WP_001173673.1|1230180_1230786_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>NZ_CP023353.1|WP_001551549.1|1230835_1231159_+|DUF3561-family-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVIGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>NZ_CP023353.1|WP_000517476.1|1231352_1231664_+|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>NZ_CP023353.1|WP_000246131.1|1231682_1232393_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKHVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>NZ_CP023353.1|WP_001219242.1|1232392_1232872_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>NZ_CP023353.1|WP_000568924.1|1232868_1233918_+|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGALRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>NZ_CP023353.1|WP_001295182.1|1233898_1234660_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW

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Crispr_ID: NZ_CP023353_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023353_3

2423340-2423463

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP023353_3

>merge|NZ_CP023353|3|2423340-2423463|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>NZ_CP023353|3|3|2423340-2423463|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023353.1\|WP_000504342.1\|2418180_2418828_+\|YdhW-family-putative-oxidoreductase-system-protein	unknown	unknown	gnl\|CDD\|182160
NZ_CP023353.1\|WP_001295403.1\|2412793_2414206_-\|pyruvate-kinase-I	unknown	unknown	gnl\|CDD\|181699
NZ_CP023353.1\|WP_000102278.1\|2432359_2432449_+\|stress-response-protein-YnhF	unknown	unknown	unknown
NZ_CP023353.1\|WP_000528342.1\|2414762_2414972_+\|fumarate-hydratase-FumD	unknown	unknown	gnl\|CDD\|182359
NZ_CP023353.1\|WP_001070006.1\|2419556_2420342_+\|thiosulfate-reductase-cytochrome-B-subunit	unknown	unknown	gnl\|CDD\|184968
NZ_CP023353.1\|WP_001551166.1\|2422899_2423205_-\|monooxygenase	unknown	unknown	gnl\|CDD\|182975
NZ_CP023353.1\|WP_001174939.1\|2425074_2426448_-\|multidrug-efflux-MATE-transporter-MdtK	unknown	unknown	gnl\|CDD\|234981
NZ_CP023353.1\|WP_001309532.1\|2418891_2419560_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|274451
NZ_CP023353.1\|WP_001070230.1\|2415427_2416054_+\|ferredoxin-like-protein	unknown	unknown	gnl\|CDD\|182135
NZ_CP023353.1\|WP_000269493.1\|2430106_2431039_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
NZ_CP023353.1\|WP_000098886.1\|2427343_2428492_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
NZ_CP023353.1\|WP_000587586.1\|2420345_2421158_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182159
NZ_CP023353.1\|WP_001595821.1\|2423777_2425034_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|137602
NZ_CP023353.1\|WP_001182362.1\|2428782_2429994_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182924
NZ_CP023353.1\|WP_001551167.1\|2421169_2422774_-\|FAD-NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|182134
NZ_CP023353.1\|WP_001520610.1\|2416074_2418177_+\|aldehyde-ferredoxin-oxidoreductase	unknown	unknown	gnl\|CDD\|236629
NZ_CP023353.1\|WP_000701039.1\|2432614_2433784_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP023353.1\|WP_000493947.1\|2426662_2427304_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846
NZ_CP023353.1\|WP_000190982.1\|2431035_2432061_-\|HTH-type-transcriptional-repressor-PurR	unknown	unknown	gnl\|CDD\|236739
NZ_CP023353.1\|WP_000007283.1\|2433929_2434511_-\|superoxide-dismutase-[Fe]	unknown	unknown	gnl\|CDD\|182534

Protein	Function_ID	Function_description	E-value
NZ_CP023353.1\|WP_000504342.1\|2418180_2418828_+\|YdhW-family-putative-oxidoreductase-system-protein	gnl\|CDD\|182160	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein.	7.0625e-122
NZ_CP023353.1\|WP_001295403.1\|2412793_2414206_-\|pyruvate-kinase-I	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0
NZ_CP023353.1\|WP_000528342.1\|2414762_2414972_+\|fumarate-hydratase-FumD	gnl\|CDD\|182359	PRK10292, PRK10292, fumarate hydratase FumD.	2.11502e-34
NZ_CP023353.1\|WP_001070006.1\|2419556_2420342_+\|thiosulfate-reductase-cytochrome-B-subunit	gnl\|CDD\|184968	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional.	3.09269e-162
NZ_CP023353.1\|WP_001551166.1\|2422899_2423205_-\|monooxygenase	gnl\|CDD\|182975	PRK11118, PRK11118, putative monooxygenase; Provisional.	2.52152e-64
NZ_CP023353.1\|WP_001174939.1\|2425074_2426448_-\|multidrug-efflux-MATE-transporter-MdtK	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
NZ_CP023353.1\|WP_001309532.1\|2418891_2419560_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	1.77106e-75
NZ_CP023353.1\|WP_001070230.1\|2415427_2416054_+\|ferredoxin-like-protein	gnl\|CDD\|182135	PRK09898, PRK09898, ferredoxin-like protein.	6.99609e-140
NZ_CP023353.1\|WP_000269493.1\|2430106_2431039_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
NZ_CP023353.1\|WP_000098886.1\|2427343_2428492_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
NZ_CP023353.1\|WP_000587586.1\|2420345_2421158_+\|hypothetical-protein	gnl\|CDD\|182159	PRK09946, PRK09946, hypothetical protein; Provisional.	1.63281e-174
NZ_CP023353.1\|WP_001595821.1\|2423777_2425034_+\|hypothetical-protein	gnl\|CDD\|137602	PRK09945, PRK09945, hypothetical protein; Provisional.	0
NZ_CP023353.1\|WP_001182362.1\|2428782_2429994_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
NZ_CP023353.1\|WP_001551167.1\|2421169_2422774_-\|FAD-NAD(P)-binding-protein	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
NZ_CP023353.1\|WP_001520610.1\|2416074_2418177_+\|aldehyde-ferredoxin-oxidoreductase	gnl\|CDD\|236629	PRK09849, PRK09849, putative oxidoreductase; Provisional.	0
NZ_CP023353.1\|WP_000701039.1\|2432614_2433784_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	9.34269e-98
NZ_CP023353.1\|WP_000493947.1\|2426662_2427304_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	2.24506e-123
NZ_CP023353.1\|WP_000190982.1\|2431035_2432061_-\|HTH-type-transcriptional-repressor-PurR	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
NZ_CP023353.1\|WP_000007283.1\|2433929_2434511_-\|superoxide-dismutase-[Fe]	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	3.77321e-138

>NZ_CP023353.1|WP_001551166.1|2422899_2423205_-|monooxygenase
MATLLQLHFAFNGPFGDAMAEQLEPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA
>NZ_CP023353.1|WP_001551167.1|2421169_2422774_-|FAD-NAD(P)-binding-protein
MKKIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKLMLANIASIEIPPIYCTYLEWLQKQEASHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVIFHRDNASEKLNITLMSRTGILPEADFYCPIPYEPLHIVTDQALNAEIQKGEYGLLDRVFRLIVEEIKFADPGWSQRIALESLNVDSFAQAWFAERKQRDPFDWAEKNLQEVERNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPSESIRRLLALREAGIIHILALGEDYEMEINESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFPGLREQLQKTGDKNPDVGEDYTLQQPEDIRGRVAFGALPWLMHDQPFVQGLTACAEIGEAMARAVVKPASRARRRLSFD
>NZ_CP023353.1|WP_000587586.1|2420345_2421158_+|hypothetical-protein
MIITRADLREWRIGAVMYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGERPFCSQFARSDDHARIGCCEDNARIATAGYAAQIASMGYSVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRIANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANSGDNVHIIASGEDSTIVSTGVVDSIILGPGGSAALAYHDGERVRFAVAIEGENNIRAGVRYRLNEQHQFVEC
>NZ_CP023353.1|WP_001070006.1|2419556_2420342_+|thiosulfate-reductase-cytochrome-B-subunit
MNPSQHAEQFQSQLANYVPQFTPQFWPVWLIIAGLLLVGMWFVLGLHALLRARGVKKSATDHGEKVYLYSKAVRLWHWSNALLFVLLLASGLINHFALVGATAVKSLVAVHEVCGFLLLACWLGFVLINAVGGNGHHYRIRRQGWLERAAKQTRFYLFGIMQGEEHPFPATTQSKFNPLQQVAYIGVMYGLLPLLLLTGLLCLYPQAVGDVFPGVRYWLLQAHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH
>NZ_CP023353.1|WP_001309532.1|2418891_2419560_+|4Fe-4S-dicluster-domain-containing-protein
MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKKVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHYFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGREDSPEIQAWLQENKYYQYQLPGAGKPHLYRRFGQHLIKKENV
>NZ_CP023353.1|WP_000504342.1|2418180_2418828_+|YdhW-family-putative-oxidoreductase-system-protein
MGEMNHQDELPLAKVSEVDEAKRQWLQGMRHPVDTVTEPEPAEILAEFIRQHSAAGQLVARAVFLSPPYSVAEEELSVLLESIKQNGDHADIACLTGSQDDYYYSTQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIESAIAAMDIAPEYADIRQVESSTAVLYLFSERFMTYGKAYGLCEWFEVEQFQNP
>NZ_CP023353.1|WP_001520610.1|2416074_2418177_+|aldehyde-ferredoxin-oxidoreductase
MANGWTGNILRVNLTTGNITLEDSSKFKSFVGGMGFGYKIMYDEVPPGTKPFDEANKLVFATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQMKFAGYDVIIIEGKAKSPVWLNIKDDKVSLEKADFLWGKGTRATTEEICRLTSPETCVAAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKRLNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPPGNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPGTGGNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYSKGVFKRVLPAEEYAEIRWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWNLGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTVSPLKSRNYRGDLALEAKFFKAITGEEMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRNEHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGCPTRETLQRLGLEDIAADLAAHNLLPA
>NZ_CP023353.1|WP_001070230.1|2415427_2416054_+|ferredoxin-like-protein
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV
>NZ_CP023353.1|WP_000528342.1|2414762_2414972_+|fumarate-hydratase-FumD
MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAMETVINALVK
>NZ_CP023353.1|WP_001295403.1|2412793_2414206_-|pyruvate-kinase-I
MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL
>NZ_CP023353.1|WP_001595821.1|2423777_2425034_+|hypothetical-protein
MGSDAKNLMSDGNVQIVKTGEVIGVTQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDKGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPGGEASNCEINQGGVFMLAGKASDTLLAGGTMNNLGGEDSDTIVENGSTYRLGTDGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRVPVELTGSVALLDGASMIIGYGADLQQSTITVQQGGVLILDGSTVKGDSVTFSVGNINLNGGKLWLITDAATQVHLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITDASRQTLCNALKLQPDEDGIGATLQPA
>NZ_CP023353.1|WP_001174939.1|2425074_2426448_-|multidrug-efflux-MATE-transporter-MdtK
MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRLPSAIILQRAAR
>NZ_CP023353.1|WP_000493947.1|2426662_2427304_+|riboflavin-synthase
MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA
>NZ_CP023353.1|WP_000098886.1|2427343_2428492_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIHVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIAGARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKMAQERCEGLDVTILLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLNVDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR
>NZ_CP023353.1|WP_001182362.1|2428782_2429994_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLLWGPLSDRYGRKPVLLIGLTIFALGSLGMLWVENAATLLVLRFVQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQAIFATLFAITVVLILPIFWLKPTTKARNNSQDGLTFTDLLRSKTYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLVLFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAALQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEVDCQNHGNAEVAHSESH
>NZ_CP023353.1|WP_000269493.1|2430106_2431039_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRLVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALELENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLREPEETPATGD
>NZ_CP023353.1|WP_000190982.1|2431035_2432061_-|HTH-type-transcriptional-repressor-PurR
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>NZ_CP023353.1|WP_000102278.1|2432359_2432449_+|stress-response-protein-YnhF
MSTDLKFSLVTTIIVLGLIVAVGLTAALH
>NZ_CP023353.1|WP_000701039.1|2432614_2433784_+|MFS-transporter
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFFSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAATFAVVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPEAVCVANS
>NZ_CP023353.1|WP_000007283.1|2433929_2434511_-|superoxide-dismutase-[Fe]
MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA

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Crispr_ID: NZ_CP023353_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023353_4

3165192-3165283

Orphan

Consensus_repeat	Method
CCACCTTTTTTACCTGCTTCAGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP023353_4

>merge|NZ_CP023353|4|3165192-3165283|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGCGCGCTGCGGGTCATTTTTGAAATTACCCCCGCTGTGCTGTCCACCTTTTTTACCTGCTTCTGATGC

>NZ_CP023353|4|4|3165192-3165283|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGC	GCGCTGCGGGTCATTTTTGAAATTACCCCCGCTGTGCTGT
CCACCTTTTTTACCTGCTTCTGATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023353.1\|WP_000209875.1\|3170956_3171556_-\|molecular-chaperone-TorD	unknown	unknown	gnl\|CDD\|235326
NZ_CP023353.1\|WP_001143120.1\|3166323_3166551_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182285
NZ_CP023353.1\|WP_001230242.1\|3174098_3175271_-\|pentaheme-c-type-cytochrome-TorC	unknown	unknown	gnl\|CDD\|184992
NZ_CP023353.1\|WP_001126780.1\|3161429_3161816_+\|pyrimidine-utilization-protein-C	unknown	unknown	gnl\|CDD\|274677
NZ_CP023353.1\|WP_001044307.1\|3166588_3167830_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	unknown	unknown	gnl\|CDD\|182284
NZ_CP023353.1\|WP_001595618.1\|3171552_3174099_-\|trimethylamine-N-oxide-reductase-TorA	unknown	unknown	gnl\|CDD\|237909
NZ_CP023353.1\|WP_000024560.1\|3170558_3170864_+\|chaperone-modulator-CbpM	unknown	unknown	gnl\|CDD\|182346
NZ_CP023353.1\|WP_001550940.1\|3154706_3158669_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|236989
NZ_CP023353.1\|WP_001151437.1\|3165706_3166303_+\|NAD(P)H:quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|179647
NZ_CP023353.1\|WP_000420641.1\|3169638_3170559_+\|curved-DNA-binding-protein	unknown	unknown	gnl\|CDD\|182347
NZ_CP023353.1\|WP_001550939.1\|3161823_3162624_+\|pyrimidine-utilization-protein-D	unknown	unknown	gnl\|CDD\|211851
NZ_CP023353.1\|WP_001550938.1\|3162633_3163224_+\|malonic-semialdehyde-reductase	unknown	unknown	gnl\|CDD\|180040
NZ_CP023353.1\|WP_000191701.1\|3158708_3159347_-\|HTH-type-transcriptional-regulator-RutR	unknown	unknown	gnl\|CDD\|184970
NZ_CP023353.1\|WP_001365093.1\|3163749_3165078_+\|pyrimidine-utilization-transport-protein-G	unknown	unknown	gnl\|CDD\|132655
NZ_CP023353.1\|WP_001120112.1\|3175400_3176093_+\|two-component-system-response-regulator-TorR	unknown	unknown	gnl\|CDD\|182711
NZ_CP023353.1\|WP_001313729.1\|3159634_3160726_+\|pyrimidine-utilization-protein-A	unknown	unknown	gnl\|CDD\|163355
NZ_CP023353.1\|WP_001595619.1\|3168122_3169379_-\|YccE-family-protein	unknown	unknown	gnl\|CDD\|182074
NZ_CP023353.1\|WP_001028095.1\|3163234_3163729_+\|pyrimidine-utilization-flavin-reductase-protein-F	unknown	unknown	gnl\|CDD\|132654
NZ_CP023353.1\|WP_001446784.1\|3160725_3161418_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	unknown	unknown	gnl\|CDD\|163356
NZ_CP023353.1\|WP_000979516.1\|3154442_3154652_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP023353.1\|WP_000209875.1\|3170956_3171556_-\|molecular-chaperone-TorD	gnl\|CDD\|235326	PRK04976, torD, chaperone protein TorD; Validated.	7.65604e-84
NZ_CP023353.1\|WP_001143120.1\|3166323_3166551_+\|hypothetical-protein	gnl\|CDD\|182285	PRK10174, PRK10174, hypothetical protein; Provisional.	8.66725e-44
NZ_CP023353.1\|WP_001230242.1\|3174098_3175271_-\|pentaheme-c-type-cytochrome-TorC	gnl\|CDD\|184992	PRK15032, PRK15032, pentaheme c-type cytochrome TorC.	0
NZ_CP023353.1\|WP_001126780.1\|3161429_3161816_+\|pyrimidine-utilization-protein-C	gnl\|CDD\|274677	TIGR03610, RutC, pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.	5.99808e-85
NZ_CP023353.1\|WP_001044307.1\|3166588_3167830_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	gnl\|CDD\|182284	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional.	0
NZ_CP023353.1\|WP_001595618.1\|3171552_3174099_-\|trimethylamine-N-oxide-reductase-TorA	gnl\|CDD\|237909	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA.	0
NZ_CP023353.1\|WP_000024560.1\|3170558_3170864_+\|chaperone-modulator-CbpM	gnl\|CDD\|182346	PRK10265, PRK10265, chaperone modulator CbpM.	5.75956e-65
NZ_CP023353.1\|WP_001550940.1\|3154706_3158669_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	gnl\|CDD\|236989	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed.	0
NZ_CP023353.1\|WP_001151437.1\|3165706_3166303_+\|NAD(P)H:quinone-oxidoreductase	gnl\|CDD\|179647	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional.	8.51484e-133
NZ_CP023353.1\|WP_000420641.1\|3169638_3170559_+\|curved-DNA-binding-protein	gnl\|CDD\|182347	PRK10266, PRK10266, curved DNA-binding protein.	0
NZ_CP023353.1\|WP_001550939.1\|3161823_3162624_+\|pyrimidine-utilization-protein-D	gnl\|CDD\|211851	TIGR03611, RutD, pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.	1.08309e-139
NZ_CP023353.1\|WP_001550938.1\|3162633_3163224_+\|malonic-semialdehyde-reductase	gnl\|CDD\|180040	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional.	8.62734e-131
NZ_CP023353.1\|WP_000191701.1\|3158708_3159347_-\|HTH-type-transcriptional-regulator-RutR	gnl\|CDD\|184970	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional.	1.3356e-153
NZ_CP023353.1\|WP_001365093.1\|3163749_3165078_+\|pyrimidine-utilization-transport-protein-G	gnl\|CDD\|132655	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).	0
NZ_CP023353.1\|WP_001120112.1\|3175400_3176093_+\|two-component-system-response-regulator-TorR	gnl\|CDD\|182711	PRK10766, PRK10766, two-component system response regulator TorR.	5.89892e-138
NZ_CP023353.1\|WP_001313729.1\|3159634_3160726_+\|pyrimidine-utilization-protein-A	gnl\|CDD\|163355	TIGR03612, RutA, pyrimidine utilization protein A. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the luciferase family defined by pfam00296 and is likely a FMN-dependent monoxygenase. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP023353.1\|WP_001595619.1\|3168122_3169379_-\|YccE-family-protein	gnl\|CDD\|182074	PRK09784, PRK09784, YccE family protein.	0
NZ_CP023353.1\|WP_001028095.1\|3163234_3163729_+\|pyrimidine-utilization-flavin-reductase-protein-F	gnl\|CDD\|132654	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.	3.76111e-106
NZ_CP023353.1\|WP_001446784.1\|3160725_3161418_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	gnl\|CDD\|163356	TIGR03614, RutB, pyrimidine utilization protein B.	1.68103e-168

>NZ_CP023353.1|WP_001365093.1|3163749_3165078_+|pyrimidine-utilization-transport-protein-G
MAMFGFPHWQLKSTSTESGVVAPDERLPFAQTAVMGVQHAVAMFGATVLMPILMGLDPNLSILMSGIGTLLFFFITGGRVPSYLGSSAAFVGVVIAATGFNGQGINPNISIALGGIIACGLVYTVIGLVVMKIGTRWIERLMPPVVTGAVVMAIGLNLAPIAVKSVSASAFDSWMAVMTVLCIGLVAVFTRGMIQRLLILVGLIVACLLYGVMTNVLGLGKAVDFTLVSHAAWFGLPHFSTPAFNGQAMMLIAPVAVILVAENLGHLKAVAGMTGRNMDPYMGRAFVGDGLATMLSGSVGGSGVTTYAENIGVMAVTKVYSTLVFVAAAVIAMLLGFSPKFGALIHTIPAPVIGGASIVVFGLIAVAGARIWVQNRVDLSQNGNLIMVAVTLVLGAGDFALTLGGFTLGGIGTATFGAILLNALLSRRLVDVPPPEVVHQEP
>NZ_CP023353.1|WP_001028095.1|3163234_3163729_+|pyrimidine-utilization-flavin-reductase-protein-F
MNIVDQQTFRDAMSCMGAAVNIITTDGPAGRAGFTASAVCSVTDTPPTLLVCLNRGASVWPVFNENRTLCVNTLSAGQEPLSNLFGGKTPMEHRFAAARWQTGVTGCPQLEEALVSFDCRISQVVSVGTHDILFCAIEAIHRHATPYGLVWFDRSYHALMRPAC
>NZ_CP023353.1|WP_001550938.1|3162633_3163224_+|malonic-semialdehyde-reductase
MNEAISPGALSTLFTDARTHNGWRETPVSDETLRELYALMKWGPTSANCSPARIVFIRTAEGKERLRPALSSGNLQKTLTAPVTAIVAWDSEFYERLPQLFPHGDARSWFTSSPQLAEETAFRNSSIQAAYLIVACRALGLDTGPMSGFDRQHVDDAFFTGSTLKSNLLINIGYGDSSKLYARLPRLSFEEACGLL
>NZ_CP023353.1|WP_001550939.1|3161823_3162624_+|pyrimidine-utilization-protein-D
MKLSLSPPPYADAPVVVLISGLGGSGSYWLPQLAVLEQEYQVICYDQRGTGNNPDTLEEDYSIAQMAAELHQALVAAGIERYAVVGHALGALVGMQLALDYPASLTVLVSVNGWLRINAHTRRCFQVREQLLHSGGAQAWVEAQPLFLYPADWMAARAPRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVPTACSSELHAALPDSQKMVMRYGGHACNVTDPETFNALLLNGLASLLHHREAAL
>NZ_CP023353.1|WP_001126780.1|3161429_3161816_+|pyrimidine-utilization-protein-C
MPKSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLETIRKVIETAGGTMADVTFNSIFITDWKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALVEIATIAHIAK
>NZ_CP023353.1|WP_001446784.1|3160725_3161418_+|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB
MTILTARPEAITFDPQQSALIVVDMQNAYATPGGYLDLAGFDVSTTRPVIANIQTAVTAARAAGMLIIWFQNGWDEQYVEAGGPGSPNFHKSNALKTMRKQPQLQGKLLAKGSWDYQLVDELVPQPGDIVLPKPRYSGFFNTPLDSILRSRGIRHLVFTGIATNVCVESTLRDGFFLEYFGVVLEDATHQAGPEFAQKAALFNIETFFGWVSDVETFCDALSPTSFARIA
>NZ_CP023353.1|WP_001313729.1|3159634_3160726_+|pyrimidine-utilization-protein-A
MKIGVFVPIGNNGWLISTHAPQYMPTFELNKAIVQKAEHYHFDFALSMIKLRGFGGKTEFWDHNLESFTLMAGLAAVTSRIQIYATAATLTLPPAIVARMAATIDSISGGRFGVNLVTGWQKPEYEQMGIWPGDDYFSRRYDYLTEYVQVLRDLWGSGKSDFKGDFFTMDDCRVSPQPSVPMKVICAGQSDAGMAFSARYADFNFCFGKGVNTPTAFAPTAARMKQAAEQTGRDVGSYVLFMVIADETDDAARAKWEHYKAGADEEALSWLTEQSQKDTRSGTDTNVRQMADPTSAVNINMGTLVGSYASVARMLDEVASVPGAEGVLLTFDDFLSGIETFGERIQPLMQCRAHLPALTQEVA
>NZ_CP023353.1|WP_000191701.1|3158708_3159347_-|HTH-type-transcriptional-regulator-RutR
MTQGAVKTTGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQHLIFMIWASTQHYADFAPQVEAVTGATLRDEVFFNQTVENVQRIIIEGIRPR
>NZ_CP023353.1|WP_001550940.1|3154706_3158669_+|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase
MGTTTMGVKLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQLENSDTLPELPALLSGAANESDEAPTPAEEPHQPFLDFAEQILPQSVSRAAITAAYRRPETEAVSMLLEQARLPQPIAEQAHKLAYQLADKLRNQKNASGRAGMVQGLLQEFSLSSQEGVALMCLAEALLRIPDKATRDALIRDKISNGNWQSHIGRSPSLFVNAATWGLLFTGKLVSTHNEASLSRSLNRIIGKSGEPLIRKGVDMAMRLMGEQFVTGETIAEALANARKLEEKGFRYSYDMLGEAALTAADAQAYMVSYQQAIHAIGKASNGRGIYEGPGISIKLSALHPRYSRAQYDRVMEELYPRLKSLTLLARQYDIGINIDAEEADRLEISLDLLEKLCFEPELAGWNGIGFVIQAYQKRCPLVIDYLIDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGLEGYPVYTRKVYTDVSYLACAKKLLAVPNLIYPQFATHNAHTLAAIYQLAGQNYYPGQYEFQCLHGMGEPLYEQVTGKVADGKLNRPCRIYAPVGTHETLLAYLVRRLLENGANTSFVNRIADTSLPLDELVADPVTAVEKLAQQEGQTGLPHPKIPLPRDLYGHGRDNSAGLDLANEHRLASLSSALLNSALQKWQALPMLEQSVAAGEMSPVINPAEPKDIVGFVREATPREVEQALESAVNNAPIWFATPPAERAAILHRAAVLMESQMQQLIGILVREAGKTFSNAIAEVREAVDFLHYYAGQVRDDFANETHRPLGPVVCISPWNFPLAIFTGQIAAALAAGNSVLAKPAEQTPLIAAQGIAILLEAGVPPGVVQLLPGQGETVGAQLTGDDRVRGVMFTGSTEVATLLQRNIASRLDAQGRPIPLIAETGGMNAMIVDSSALTEQVVIDVLASAFDSAGQRCSALRVLCLQDEIADHTLKMLRGAMAECRMGNPGRLTTDIGPVIDSEAKANIERHIQTMRSKGRPVFQAVRENSEDAREWQSGTFVAPTLIELDDFAELQKEVFGPVLHVVRYNRNQLPELIEQINASGYGLTLGVHTRIDETIAQVTGSAHVGNLYVNRNMVGAVVGVQPFGGEGLSGTGPKAGGPLYLYRLLANRPESALAVTLARQDAEYPVDAQLKAALTQPLNALREWAANRPELQALCTQYGELAQAGTQRLLPGPTGERNTWTLLPRERVLCIADDEQDALTQLAAVLAVGSQVLWPDDTLHRQLVKALPSAVSERIQLAKAENITAQPFDAVIFHGDSDQLRALCEAVAARDGAIVSVQGFARGESNILLERLYIERSLSVNTAAAGGNASLMTIG
>NZ_CP023353.1|WP_000979516.1|3154442_3154652_-|hypothetical-protein
MMLQLCATMLNVTCVASLKMNEMLIKEIDMTGIKKITQTFSLRQLTFLKGATAKNVRECNLMKNSVAEH
>NZ_CP023353.1|WP_001151437.1|3165706_3166303_+|NAD(P)H:quinone-oxidoreductase
MAKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYAAQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG
>NZ_CP023353.1|WP_001143120.1|3166323_3166551_+|hypothetical-protein
MPTQEAKAHHVGEWASLRNTSPEIAEAIFEVAGYDEKMAEKIWEEGSDEVLVKAFAKTDKDSLFWGEQTIERKNV
>NZ_CP023353.1|WP_001044307.1|3166588_3167830_-|bifunctional-glucose-1-phosphatase/inositol-phosphatase
MNKTLIAATVAGIVLLASNAQAQTVPEGYQLQQVLMMSRHNLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYMGHYMREWLAEQGMVKSGECPPPDTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKMGTMDPTFNPVITDDSAAFSEQAVAAMEKELSKLQLTDSYQLLEKIVNYKDSPACKEKQQCSLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKSDQQWKVLSKLKNGYQDSLFTSPEVARNVAKPLVSYIDKALVTDRTSAPKITVLVGHDSNIASLLTALDFKPYQLHDQNERTPIGGKIVFQRWHDSKANRDLMKIEYVYQSAEQLRNADALTLQAPAQRVTLELSGCPIDANGFCPMDKFDSVLNEAVK
>NZ_CP023353.1|WP_001595619.1|3168122_3169379_-|YccE-family-protein
MGSNIHGISCTANNYLKQAWHNIKKEHEKNQTYSITLFENTLVCFMRLYKEIRRQKAEDYIPCLECESLEKEFEEMQNDNDLSLFMRTLRTNDTKIYSGVSGGMTYTIQYVQDIDVVRVSLPGRASESITDFKGYYWYGFMEYIENINACDDVFSEYCLEDENISVQPERLNTPGIFNLDAGIDLSGISFIQSEINKTYELKYAPVDGDGYCLLRAILVLKQHDYSWALGSHKTQKEVYEEFIKIVDKPTIEALVDAAFCDLREDVKTLFGVDLQSDNKIQGVGSLMSWSFLFFKKEFIDSCLNNEKCILHLPEFIFNDNKNLLALDTDTSDRIKAVKNFLAVLSDSICSLFIVNSNVASISLGNESFSTDEDREYGYLINTGNHYDVYLPPELFAQAYKLNNKERNAQIDFLTRYAI
>NZ_CP023353.1|WP_000420641.1|3169638_3170559_+|curved-DNA-binding-protein
MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFSRQFQHGDGQSFNAEDFDDIFSSIFGQHARQSRQRPATRGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPVSPWEAALGAKVTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSKKQTGDLYAVLKIVMPPKPDENTAALWQQLADAQSSFDPRKDWGKA
>NZ_CP023353.1|WP_000024560.1|3170558_3170864_+|chaperone-modulator-CbpM
MANVTVTFTITEFCLHTGISEEELNEIVGLGVVEPREIQETTWVFDDHAAIVVQRAVRLRHELALDWPGIAVALTLMDDIAHLKQENRLLRQRLSRFVAHP
>NZ_CP023353.1|WP_000209875.1|3170956_3171556_-|molecular-chaperone-TorD
MTTLTAQQIACVYAWLAQLFSRELDDEQLTQIASAQMAEWFSLLKSEPPLAAAVSELENRIATLTVRDDARLELAADFCGLFLMTDKQAALPYASAYKQDEQEIKRLLVEAGMETSGNFNEPADHLAIYLELLSHLHFSLGEGTVPARRIDSLRQKTLTALWEWLPEFAARCHQYDSFGFYAALSQLLLVLVECDHQNR
>NZ_CP023353.1|WP_001595618.1|3171552_3174099_-|trimethylamine-N-oxide-reductase-TorA
MNNNDLFQASRRRFLAQLGGLTVAGMLGPSLLTPRRATAAQAATEAVISKEGILTGSHWGAIRATVKDGRFVAAKPFELDKYPSKMIAGLPDHVHNAARIRYPMVRVDWLRKRHLSDTSQRGDNRFVRVSWDEALDMFYEELERVQKTHGPSALLTASGWQSTGMFHNASGMLAKAIALHGNSVGTGGDYSTGAAQVILPRVVGSMEVYEQQTSWPLVLQNSKTIVLWGSDLLKNQQANWWCPDHDVYEYYEQLKAKVAAGEIEVISIDPVVTSTHEYLGREHVKHIAVNPQTDVPLQLALAHTLYSENLYDKNFLANYCVGFEQFLPYLLGEKDGQPKDVAWAEKLTGIDAETIRGLARQMAANRTQIIAGWCVQRMQHGEQWAWMIVVLAAMLGQIGLPGGGFGFGWHYNGAGTPGRKGVILSGFSGSTSIPPVHDNSDYKGYSSTIPIARFVDAILEPGKVINWNGKSVKLPPLKMCIFAGTNPFHRHQQINRIIEGWRKLETVIAIDNQWTSTCRFADIVLPATTQFERNDLDQYGNHSNRGIIAMKQVVPPQFEARNDFDIFRELCRRFNREEAFTEGLDEMGWLKRIWQEGVQQGKGRGVHLPAFDDFWNNKEYVEFDHPQMFVRHQAFREDPDLEPLGTPSGLIEIYSKTIADMNYDDCQGHPMWFEKIERSHGGPGSQKYPLHLQSVHPDFRLHSQLCESETLRQQYTVAGKEPVFINPQDASARGIRNGDVVRVFNARGQVLAGAVVSDRYAPGVARIHEGAWYDPDKGGEPGALCKYGNPNVLTIDIGTSQLAQATSAHTTLVEIEKYSGTVEQVTAFNGPVEMVAQCEYVPASQVKS
>NZ_CP023353.1|WP_001230242.1|3174098_3175271_-|pentaheme-c-type-cytochrome-TorC
MRKLWNALRRPSARWSVLALVAIGIVIGIALIVLPHVGIKVTSTTEFCVSCHSMQPVYEEYKQSVHFQNASGVRAECHDCHIPPDIPGMVKRKLEASNDIYQTFIAHSIDTPEKFEAKRAELAEREWARMKENNSATCRSCHNYDAMDHAKQHPEAARQMKVAAKDNQSCIDCHKGIAHQLPDMSSGFRKQFDELRASANDSGDTLYSIDIKPIYAAKGDKEASGSLLPASEVKVLKRDGDWLQIEITGWTESAGRQRVLTQFPGKRIFVASIRGDVQQQVKTLEKTTVADTNTEWSKLQATAWMKKGDMVNDIKPIWAYADSLYNGTCNQCHGAPEIAHFDANGWIGTLNGMIGFTSLDKREERTLLKYLQMNASDTAGKAHGDKKEEK
>NZ_CP023353.1|WP_001120112.1|3175400_3176093_+|two-component-system-response-regulator-TorR
MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQPVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC

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Crispr_ID: NZ_CP023353_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023353_5

4209759-4209891

Orphan

Consensus_repeat	Method
ATCACCAATATTGAAAA	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP023353_5

>merge|NZ_CP023353|5|4209759-4209891|PILER-CR
ATCACCAATATTGAAAATGTCACACGCAGATAAATCCAACTTTCAATATTGTTAAGTCCCTCACCAATATTGAAAACATGGCGTAGCAAAAAGAAATTTTCAATATTGCTTTATGGATCACCAATATTGAAAG

>NZ_CP023353|5|3|4209759-4209891|PILER-CR
ATCACCAATATTGAAAA	TGTCACACGCAGATAAATCCAACTTTCAATATTGTTAAGTCC
CTCACCAATATTGAAAA	CATGGCGTAGCAAAAAGAAATTTTCAATATTGCTTTATGG
ATCACCAATATTGAAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023353.1\|WP_001596503.1\|4214247_4215801_+\|crotonobetaine/carnitine-CoA-ligase	unknown	unknown	gnl\|CDD\|181195
NZ_CP023353.1\|WP_000125566.1\|4201447_4201681_-\|antitoxin	unknown	unknown	gnl\|CDD\|227619
NZ_CP023353.1\|WP_001596508.1\|4206604_4207891_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182273
NZ_CP023353.1\|WP_001445798.1\|4215909_4216695_+\|crotonobetainyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|179599
NZ_CP023353.1\|WP_001596509.1\|4206320_4206608_-\|ferredoxin-like-protein-FixX	unknown	unknown	gnl\|CDD\|185346
NZ_CP023353.1\|WP_000349954.1\|4212956_4214174_+\|L-carnitine-CoA-transferase	unknown	unknown	gnl\|CDD\|179589
NZ_CP023353.1\|WP_001577698.1\|4216700_4217291_+\|carnitine-operon-protein-CaiE	unknown	unknown	gnl\|CDD\|184189
NZ_CP023353.1\|WP_000624375.1\|4201766_4202246_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NZ_CP023353.1\|WP_001445800.1\|4221301_4222450_-\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|237139
NZ_CP023353.1\|WP_000377117.1\|4202437_4204300_-\|glutathione-regulated-potassium-efflux-system-protein-KefC	unknown	unknown	gnl\|CDD\|235131
NZ_CP023353.1\|WP_000347117.1\|4211685_4212828_+\|crotonobetainyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|179566
NZ_CP023353.1\|WP_000600725.1\|4204292_4204823_-\|glutathione-regulated-potassium-efflux-system-oxidoreductase-KefF	unknown	unknown	gnl\|CDD\|234852
NZ_CP023353.1\|WP_001596506.1\|4207941_4208883_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|235120
NZ_CP023353.1\|WP_000257195.1\|4200298_4201147_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|273208
NZ_CP023353.1\|WP_000787111.1\|4210140_4211655_+\|L-carnitine/gamma-butyrobetaine-antiporter	unknown	unknown	gnl\|CDD\|179568
NZ_CP023353.1\|WP_000543604.1\|4222905_4223727_-\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|223366
NZ_CP023353.1\|WP_001596504.1\|4208897_4209668_-\|electron-transfer-flavoprotein-FixA	unknown	unknown	gnl\|CDD\|179569
NZ_CP023353.1\|WP_001126366.1\|4218065_4221284_-\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
NZ_CP023353.1\|WP_001183198.1\|4204930_4206262_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340874
NZ_CP023353.1\|WP_000333125.1\|4217409_4217805_-\|carnitine-metabolism-transcriptional-regulator-CaiF	unknown	unknown	gnl\|CDD\|183154

Protein	Function_ID	Function_description	E-value
NZ_CP023353.1\|WP_001596503.1\|4214247_4215801_+\|crotonobetaine/carnitine-CoA-ligase	gnl\|CDD\|181195	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated.	0
NZ_CP023353.1\|WP_000125566.1\|4201447_4201681_-\|antitoxin	gnl\|CDD\|227619	COG5302, COG5302, Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only].	2.77856e-23
NZ_CP023353.1\|WP_001596508.1\|4206604_4207891_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|182273	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional.	0
NZ_CP023353.1\|WP_001445798.1\|4215909_4216695_+\|crotonobetainyl-CoA-hydratase	gnl\|CDD\|179599	PRK03580, PRK03580, crotonobetainyl-CoA hydratase.	2.50155e-179
NZ_CP023353.1\|WP_001596509.1\|4206320_4206608_-\|ferredoxin-like-protein-FixX	gnl\|CDD\|185346	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional.	1.01696e-69
NZ_CP023353.1\|WP_000349954.1\|4212956_4214174_+\|L-carnitine-CoA-transferase	gnl\|CDD\|179589	PRK03525, PRK03525, L-carnitine CoA-transferase.	0
NZ_CP023353.1\|WP_001577698.1\|4216700_4217291_+\|carnitine-operon-protein-CaiE	gnl\|CDD\|184189	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional.	6.082e-142
NZ_CP023353.1\|WP_000624375.1\|4201766_4202246_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.07206e-127
NZ_CP023353.1\|WP_001445800.1\|4221301_4222450_-\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0
NZ_CP023353.1\|WP_000377117.1\|4202437_4204300_-\|glutathione-regulated-potassium-efflux-system-protein-KefC	gnl\|CDD\|235131	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional.	0
NZ_CP023353.1\|WP_000347117.1\|4211685_4212828_+\|crotonobetainyl-CoA-dehydrogenase	gnl\|CDD\|179566	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated.	0
NZ_CP023353.1\|WP_000600725.1\|4204292_4204823_-\|glutathione-regulated-potassium-efflux-system-oxidoreductase-KefF	gnl\|CDD\|234852	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF.	2.99389e-133
NZ_CP023353.1\|WP_001596506.1\|4207941_4208883_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|235120	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein.	0
NZ_CP023353.1\|WP_000257195.1\|4200298_4201147_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
NZ_CP023353.1\|WP_000787111.1\|4210140_4211655_+\|L-carnitine/gamma-butyrobetaine-antiporter	gnl\|CDD\|179568	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter.	0
NZ_CP023353.1\|WP_000543604.1\|4222905_4223727_-\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|223366	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism].	8.28292e-142
NZ_CP023353.1\|WP_001596504.1\|4208897_4209668_-\|electron-transfer-flavoprotein-FixA	gnl\|CDD\|179569	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed.	1.53814e-169
NZ_CP023353.1\|WP_001126366.1\|4218065_4221284_-\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NZ_CP023353.1\|WP_001183198.1\|4204930_4206262_-\|MFS-transporter	gnl\|CDD\|340874	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily. This family is composed of metazoan synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters including those that transport inorganic phosphate (Pht), aromatic compounds (PcaK and related proteins), proline/betaine (ProP), alpha-ketoglutarate (KgtP), citrate (CitA), shikimate (ShiA), and cis,cis-muconate (MucK), among others. SV2 is a transporter-like protein that serves as the receptor for botulinum neurotoxin A (BoNT/A), one of seven neurotoxins produced by the bacterium Clostridium botulinum. BoNT/A blocks neurotransmitter release by cleaving synaptosome-associated protein of 25 kD (SNAP-25) within presynaptic nerve terminals. Also included in this family is synaptic vesicle 2 (SV2)-related protein (SVOP) and similar proteins. SVOP is a transporter-like nucleotide binding protein that localizes to neurotransmitter-containing vesicles. The SV2-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.4298e-59
NZ_CP023353.1\|WP_000333125.1\|4217409_4217805_-\|carnitine-metabolism-transcriptional-regulator-CaiF	gnl\|CDD\|183154	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF.	1.42176e-74

>NZ_CP023353.1|WP_001596504.1|4208897_4209668_-|electron-transfer-flavoprotein-FixA
MKIITCYKCVPDEQDIAVNNADGSLDFSKADAKISQYDLNAIEAACQLKQQAAEGQVTALSVGGKALTNAKGRKDVLSRGPDELIVVIDDQFEQALPQQTATALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAVNGVSKIISLTADTLTVERELEDETETLSIPLPAVVAVSTDINSPQIPSMKAILGAAKKPVQVWSAADIGFNAVEAWSEQQVAAPKQRERQRIVIEGDGEEQIVAFAENLRKVI
>NZ_CP023353.1|WP_001596506.1|4207941_4208883_-|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNTFSQVWVFSDTPSRLPELMNGAQALANQINTFVLNDADGAQAIQLGANHVWKLNGKPDERMIEDYAGVMADTIRQHGADGLVLLPNTRRGKLLAAKLGYRLKAAVSNDASTVCVQDGKATVKHMVYGGLAIGEERIATPYAVLTISSGTFDAAQPDASRTGETHTVEWQAPAVAITRTATQARQSNSVDLDKARLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQYADYGIVGDAVKILPALTAALAR
>NZ_CP023353.1|WP_001596508.1|4206604_4207891_-|FAD-dependent-oxidoreductase
MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFAESAPVERLITHEKLAFMTEKSAMTMDYCNGDESSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNSILAEKLGMAKRVKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGFLYTNENTLSLGLVCGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHLESGPLRDMRMYQKLPAFLDNPRMFSGYPELAVGVARDLFTIDGSAPELMRKKILRHGKKVGFINLIKDGMKGVTVL
>NZ_CP023353.1|WP_001596509.1|4206320_4206608_-|ferredoxin-like-protein-FixX
MTSPVNVDVKLGVNKFNVDEEHPHIIVKADADKQALELLVKACPAGLYKKQDDGSVRFDYAGCLECGTCRILGLGSALEQWEYPRGTFGVEFRYG
>NZ_CP023353.1|WP_001183198.1|4204930_4206262_-|MFS-transporter
MQPSRNFDDLKFSSIHRRILLWGSGGPFLDGYVLVMIGVALEQLTPALKLDADWIGLLGAGTLAGLFVGTSLFGYISDKVGRRKMFLIDIIAIGVISVATMFVSSPVELLVMRVLIGIVIGADYPIATSMITEFSSTRQRAFSISFIAAMWYVGATCADLVGYWLYDVEGGWRWMLGSAAIPCLLILIGRFELPESPRWLLRKGRVKECEEMMIKLFGEPVAFDEEQPQQTRFRDLFNRRHFPFVLFVAAIWTCQVIPMFAIYTFGPQIVGLLGLGVGKNAALGNVVISLFFMLGCIPPMLWLNTAGRRPLLIGSFAMMTLALAVLGLIPDMGIWLVVMAFAVYAFFSGGPGNLQWLYPNELFPTDIRASAVGVIMSLSRIGTIVSTWALPIFINNYGISNTMLMGAGISLFGLLISVAFAPETRGMSLAQTSNMTIRGQRMG
>NZ_CP023353.1|WP_000600725.1|4204292_4204823_-|glutathione-regulated-potassium-efflux-system-oxidoreductase-KefF
MILIIYAHPYPHHSHANKRMLEQARTLEGVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQHPMQWYSIPPLLKLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATAIYCGLNWLPPFAMHCTFICDDETLEGQARHYKQRLLEWQEAHHG
>NZ_CP023353.1|WP_000377117.1|4202437_4204300_-|glutathione-regulated-potassium-efflux-system-protein-KefC
MDSHTLIQALIYLGSAALIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDAESILHFAEIGVVLMLFIIGLELDPQRLWKLRAAVFGGGALQMVICGGLLGLFCMLLGLRWQVAELIGMTLALSSTAIAMQAMNERNLMVTQMGRSAFAVLLFQDIAAIPLVAMIPLLAASSASTTMGAFALSALKVAGALVLVVLLGRYVTRPALRFVARSGLREVFSAVALFLVFGFGLLLEEVGLSMAMGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIGVGMSIDFGTLLENPLRIVILLLGFLIIKIAMLWLIARPLQVPNKQRRWFAVLLGQGSEFAFVVFGAAQMANVLEPEWAKSLTLAVALSMAATPILLVILNRLEQSSTEEAREADEIDEEQPRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNLQLTEMVKEHFPHLQIIARARDVDHYIRLRQAGVEKPERETFEGALKTGRLALESLGLGPYEARERADVFRRFNIQMVEEMAMVENDTKARAAVYKRTSAMLSEIITEDREHLSLIQRHGWQGTEEGKHTGNMADEPETKPSS
>NZ_CP023353.1|WP_000624375.1|4201766_4202246_-|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVIMGRHTWESIGRPLPGRKNIILSSQPGTDDRVTWVKSVDEAIAACGDVPEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFEILERR
>NZ_CP023353.1|WP_000125566.1|4201447_4201681_-|antitoxin
MTAKRTTQSVTVTVDRELVNRARDAGLNMSATLTVALNAELKKHAATRWREENAEAIAALNQLADETGCFSDEYRSF
>NZ_CP023353.1|WP_000257195.1|4200298_4201147_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MATYLIGDVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPGSLDVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLTPLLEAPDADELLNWLRRQPLLQIDEEKKLVMAHAGITPQWDLQTAKECARDVEAVLSSDSYPFFLDAMYGDMPNNWSPELRGLGRLRFITNAFTRMRFCFPNGQLDMYSKESPEEAPAPLKPWFAIPGPVAEEYSIAFGHWASLEGKGTPEGIYALDTGCCWGGTLTCLRWEDKQYFVQPSNRHKDMGEGEAAAS
>NZ_CP023353.1|WP_000787111.1|4210140_4211655_+|L-carnitine/gamma-butyrobetaine-antiporter
MKNEKRKTGIEPKVFFPPLIIVGILCWLTVRDLDAANVVINAVFSYVTNVWGWAFEWYMVVMLFGWFWLVFGPYAKKRLGNEPPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISTPPFGLEPNSTGAKELGLAYSLFHWGPLPWATYSFLSVAFAYFFFVRKMEVIRPSSTLVPLVGEKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVTECMQWLFGIPHTLQLDAIIITCWIILNAICVACGLQKGVRIASDVRSYLSFLMLGWVFIVSGASFIMNYFTDSVGMLLMYLPRMLFYTDPIAKGGFPQGWTVFYWAWWVIYAIQMSIFLARISRGRTVRELCFGMVMGLTASTWILWTVLGSNTLLLMDKNIINIPNLIEQYGVARAIIETWAALPLSTATMWGFFILCFIATVTLVNACSYTLAMSTCREVRDGEEPPLLVRIGWSILVGIIGIVLLALGGLKPIQTAIIAGGCPLFFVNIMVTLSFIKDAKQNWKD
>NZ_CP023353.1|WP_000347117.1|4211685_4212828_+|crotonobetainyl-CoA-dehydrogenase
MDFNLNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGRLGAPTYVLYQLPGGFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKIYLNGSKCFITSSAYTPYIVVMARDGASPDKPVYTEWFVDMSKPGIKVTKLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQYR
>NZ_CP023353.1|WP_000349954.1|4212956_4214174_+|L-carnitine-CoA-transferase
MDHLPMPKFGPLAGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALSLNIFKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGFGQYGTEEYTNLPAYNTIAQAFSGYLIQNGDVDQPMPAFPYTADYFSGLTATTAALAALHKVRETGKGESIDIAMYEVMLRMGQYFMMDYFNGGEMCPRMTKGKDPYYAGCGLYKCADGYIVMELVGITQIEECFKDIGLAHLLGTSEIPEGTQLIHRIECPYGPLVEEKLDAWLAAHTIAEVKERFAELNIACAKVLTVPELESNPQYVARESITQWQTMDGRTCKGPNIMPKFKNNPGKIWRGMPSHGMDTAAILKNIGYSENDIQELVSKGLAKVED
>NZ_CP023353.1|WP_001596503.1|4214247_4215801_+|crotonobetaine/carnitine-CoA-ligase
MDIIGGQHLRQMWDDLADVYGHKTALICESSSGVVNRYSYLELNQEINRTANLFYALGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQACLLVTSAQFYPMYQQIQQEDASQLRHICLIDMALPADDGVSSFTQLKNQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLVEKYSARAFWGQVQKYRATITECIPMMIRTLMVQPPSANDRQHCLREVMFYLNLSEQEKDAFCERFSVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRAGFCYEAEIRDDHNRPLPAGELGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK
>NZ_CP023353.1|WP_001445798.1|4215909_4216695_+|crotonobetainyl-CoA-hydratase
MSESLHLTRNGSILEITLDRPKANAIDAKTSFEMGEVFLNFRDDPQLRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFNLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKILPPAIVNEMVMTGRRMSAEEALRWGVVNRVVSQAELMDNARELAQQLVNSAPLAIAALKEIYRTTSEMPVEEAYRYIRSGVLKHYPSVLHSEDAIEGPLAFAEKRDPVWKGR
>NZ_CP023353.1|WP_001577698.1|4216700_4217291_+|carnitine-operon-protein-CaiE
MSYYAFEGLIPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFSGEKRQLLIGTPARAVRNVSDEELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEENRPRLQGTTDVTPKR
>NZ_CP023353.1|WP_000333125.1|4217409_4217805_-|carnitine-metabolism-transcriptional-regulator-CaiF
MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVKMIPNKLEGRGCQCQRLVKVVDIDEQIYARLRNNSREKLVGVRKTPRIPAVPLTELNREQKWQMMLSKSMRR
>NZ_CP023353.1|WP_001126366.1|4218065_4221284_-|carbamoyl-phosphate-synthase-large-subunit
MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEALTKIRRELKDAGAERIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVGITGLNADFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEECESNPSDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTTIEMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKTLAEQGVTKEVIPPYYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRVIRRSALQYKVHYDTTLNGGFATAMALNADATEKVISVQEMHAQIK
>NZ_CP023353.1|WP_001445800.1|4221301_4222450_-|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit
MIKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAETYSWTQGSWTLTGGLPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEASPGPHDAAPLFDHFIELIEQYRKTAK
>NZ_CP023353.1|WP_000543604.1|4222905_4223727_-|4-hydroxy-tetrahydrodipicolinate-reductase
MHDANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAADIAIVFAANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIAHALDKDLKDCAVYSREGHTGERVPGTIGFATVRAGDIVGEHTAMFADIGERLEITHKASSRMTFANGAVRSALWLSGKESGLFDMRDVLDLNNL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP023353_2	2.2\|1225925\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1225925-1225956	32	LC542972	Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence	246388-246419	0	1.0
NZ_CP023353_2	2.5\|1226108\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1226108-1226139	32	LC542972	Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence	246449-246480	0	1.0
NZ_CP023353_2	2.6\|1226169\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1226169-1226200	32	LC542972	Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence	246510-246541	0	1.0
NZ_CP023353_2	2.7\|1226230\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1226230-1226261	32	LC542972	Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence	246571-246602	0	1.0
NZ_CP023353_2	2.8\|1226291\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1226291-1226322	32	LC542972	Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence	246693-246724	0	1.0
NZ_CP023353_2	2.9\|1226352\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1226352-1226383	32	LC542972	Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence	246754-246785	0	1.0
NZ_CP023353_2	2.10\|1226413\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1226413-1226444	32	LC542972	Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence	246876-246907	0	1.0
NZ_CP023353_4	4.1\|3165218\|40\|NZ_CP023353\|CRISPRCasFinder	3165218-3165257	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	1	0.975
NZ_CP023353_5	5.1\|4209776\|42\|NZ_CP023353\|PILER-CR	4209776-4209817	42	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	141085-141126	1	0.976
NZ_CP023353_5	5.2\|4209835\|40\|NZ_CP023353\|PILER-CR	4209835-4209874	40	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	141028-141067	1	0.975
NZ_CP023353_1	1.4\|1197660\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1197660-1197691	32	NZ_CP021720	Escherichia coli strain AR_0128 plasmid tig00000793, complete sequence	108177-108208	2	0.938
NZ_CP023353_1	1.4\|1197660\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1197660-1197691	32	NZ_CP020051	Escherichia coli strain AR_0118 plasmid unitig_3, complete sequence	58915-58946	2	0.938
NZ_CP023353_1	1.4\|1197660\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1197660-1197691	32	KP869108	Escherichia coli O157 typing phage 10, complete genome	36668-36699	2	0.938
NZ_CP023353_1	1.4\|1197660\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1197660-1197691	32	KP869107	Escherichia coli O157 typing phage 9, partial genome	36792-36823	2	0.938
NZ_CP023353_1	1.4\|1197660\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1197660-1197691	32	NC_019711	Enterobacteria phage HK629, complete genome	30059-30090	2	0.938
NZ_CP023353_1	1.4\|1197660\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1197660-1197691	32	NC_007804	Escherichia phage phiV10, complete genome	36258-36289	2	0.938
NZ_CP023353_1	1.4\|1197660\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1197660-1197691	32	DQ126339	Enterobacteria phage phiV10, complete genome	36258-36289	2	0.938
NZ_CP023353_1	1.4\|1197660\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1197660-1197691	32	MT225100	Escherichia phage Lys8385Vzw, complete genome	29553-29584	2	0.938
NZ_CP023353_1	1.19\|1198575\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1198575-1198606	32	KT898133	Aeromonas phage phiARM81ld, complete genome	45655-45686	2	0.938
NZ_CP023353_3	3.1\|2423383\|38\|NZ_CP023353\|CRISPRCasFinder	2423383-2423420	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
NZ_CP023353_2	2.7\|1226230\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1226230-1226261	32	MN855767	Bacteriophage sp. isolate 11, complete genome	31880-31911	5	0.844
NZ_CP023353_1	1.5\|1197721\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1197721-1197752	32	NZ_CP006570	Sodalis praecaptivus strain HS1 plasmid pHS1, complete sequence	200247-200278	6	0.812
NZ_CP023353_2	2.8\|1226291\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1226291-1226322	32	NC_013855	Azospirillum sp. B510 plasmid pAB510a, complete sequence	100800-100831	6	0.812
NZ_CP023353_1	1.5\|1197721\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1197721-1197752	32	NZ_CP047145	Streptomyces sp. HF10 plasmid plas1, complete sequence	69691-69722	7	0.781
NZ_CP023353_2	2.2\|1225925\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1225925-1225956	32	NZ_CP036405	Komagataeibacter saccharivorans strain JH1 plasmid p221732, complete sequence	83754-83785	7	0.781
NZ_CP023353_2	2.2\|1225925\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1225925-1225956	32	NZ_CP023037	Komagataeibacter saccharivorans strain CV1 plasmid unnamed1, complete sequence	128632-128663	7	0.781
NZ_CP023353_2	2.7\|1226230\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1226230-1226261	32	NZ_AP017656	Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence	103191-103222	7	0.781
NZ_CP023353_1	1.2\|1197538\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1197538-1197569	32	MN855878	Bacteriophage sp. isolate 336, complete genome	5171-5202	8	0.75
NZ_CP023353_1	1.5\|1197721\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1197721-1197752	32	NZ_AP017656	Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence	234032-234063	8	0.75
NZ_CP023353_1	1.5\|1197721\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1197721-1197752	32	NZ_CP011450	Sphingomonas sanxanigenens DSM 19645 = NX02 plasmid pNXO2, complete sequence	59722-59753	8	0.75
NZ_CP023353_1	1.11\|1198087\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1198087-1198118	32	MK373778	Escherichia phage vB_EcoM_WFbE185, complete genome	161312-161343	8	0.75
NZ_CP023353_1	1.11\|1198087\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1198087-1198118	32	LR027383	Escherichia virus vB_Eco_mar005P1 strain vB_Eco_mar007P3 genome assembly, chromosome: 1	114302-114333	8	0.75
NZ_CP023353_1	1.11\|1198087\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1198087-1198118	32	MN864145	Escherichia phage F2, complete genome	70647-70678	8	0.75
NZ_CP023353_1	1.11\|1198087\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1198087-1198118	32	LR027391	Escherichia virus vB_Eco_mar005P1 strain vB_Eco_mar009P5 genome assembly, chromosome: 1	32593-32624	8	0.75
NZ_CP023353_1	1.11\|1198087\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1198087-1198118	32	LR027386	Escherichia virus vB_Eco_mar005P1 strain vB_Eco_mar008P4 genome assembly, chromosome: 1	97083-97114	8	0.75
NZ_CP023353_1	1.11\|1198087\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1198087-1198118	32	LR027390	Escherichia virus vB_Eco_mar005P1 genome assembly, chromosome: 1	91416-91447	8	0.75
NZ_CP023353_1	1.11\|1198087\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1198087-1198118	32	LR027387	Escherichia virus vB_Eco_mar005P1 strain vB_Eco_mar006P2 genome assembly, chromosome: 1	24665-24696	8	0.75
NZ_CP023353_1	1.11\|1198087\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1198087-1198118	32	MN850651	Escherichia phage moskry, complete genome	480-511	8	0.75
NZ_CP023353_1	1.11\|1198087\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1198087-1198118	32	NC_018855	Enterobacteria phage HX01, complete genome	115963-115994	8	0.75
NZ_CP023353_1	1.11\|1198087\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1198087-1198118	32	MG589383	Shigella phage phi25-307, complete genome	139729-139760	8	0.75
NZ_CP023353_1	1.11\|1198087\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1198087-1198118	32	MH243438	Escherichia phage vB_EcoM_NBG1, complete genome	159745-159776	8	0.75
NZ_CP023353_1	1.11\|1198087\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1198087-1198118	32	NC_024124	Escherichia phage vB_EcoM_JS09, complete genome	11317-11348	8	0.75
NZ_CP023353_1	1.11\|1198087\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1198087-1198118	32	MK327934	Escherichia phage vB_EcoM_G2469, complete genome	161675-161706	8	0.75
NZ_CP023353_1	1.13\|1198209\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1198209-1198240	32	MN855880	Siphoviridae sp. isolate 369, complete genome	5249-5280	8	0.75
NZ_CP023353_1	1.19\|1198575\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1198575-1198606	32	MN901520	Halorubrum coriense virus Hardycor2, complete genome	16524-16555	8	0.75
NZ_CP023353_2	2.1\|1225864\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1225864-1225895	32	MG925351	Mycobacterium phage MPlant7149, complete genome	32515-32546	8	0.75
NZ_CP023353_2	2.3\|1225986\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1225986-1226017	32	NZ_CP025411	Paracoccus sp. BM15 plasmid pBM153, complete sequence	1624-1655	8	0.75
NZ_CP023353_2	2.8\|1226291\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1226291-1226322	32	NZ_CP016821	Rhodococcus sp. p52 plasmid pDF01, complete sequence	123752-123783	8	0.75
NZ_CP023353_2	2.8\|1226291\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1226291-1226322	32	NZ_CP016821	Rhodococcus sp. p52 plasmid pDF01, complete sequence	136491-136522	8	0.75
NZ_CP023353_1	1.5\|1197721\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1197721-1197752	32	NZ_CP011515	Mitsuaria sp. 7 plasmid, complete sequence	162356-162387	9	0.719
NZ_CP023353_1	1.11\|1198087\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1198087-1198118	32	MN850579	Escherichia phage mogra, complete genome	14799-14830	9	0.719
NZ_CP023353_1	1.11\|1198087\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1198087-1198118	32	MK962754	Shigella phage JK36, complete genome	160101-160132	9	0.719
NZ_CP023353_1	1.11\|1198087\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1198087-1198118	32	MK962756	Shigella phage JK42, complete genome	159532-159563	9	0.719
NZ_CP023353_1	1.11\|1198087\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1198087-1198118	32	MK327933	Escherichia phage vB_EcoM_G2285, complete genome	157874-157905	9	0.719
NZ_CP023353_1	1.11\|1198087\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1198087-1198118	32	MN850590	Escherichia phage moha, complete genome	120938-120969	9	0.719
NZ_CP023353_1	1.13\|1198209\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1198209-1198240	32	NZ_CP016463	Bosea sp. RAC05 plasmid pBSY19_1, complete sequence	542861-542892	9	0.719
NZ_CP023353_2	2.2\|1225925\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1225925-1225956	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	2552746-2552777	9	0.719
NZ_CP023353_1	1.1\|1197477\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1197477-1197508	32	MN693097	Marine virus AFVG_25M78, complete genome	15875-15906	10	0.688
NZ_CP023353_1	1.5\|1197721\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1197721-1197752	32	MN850587	Escherichia phage mistaenkt, complete genome	62540-62571	10	0.688
NZ_CP023353_1	1.5\|1197721\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1197721-1197752	32	MH791400	UNVERIFIED: Escherichia phage EcSzw-2, complete genome	63164-63195	10	0.688
NZ_CP023353_1	1.5\|1197721\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1197721-1197752	32	MK562504	Enterobacteria phage CHB7, complete genome	51394-51425	10	0.688
NZ_CP023353_1	1.5\|1197721\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1197721-1197752	32	NC_028808	Escherichia phage SUSP1, complete genome	60791-60822	10	0.688
NZ_CP023353_1	1.5\|1197721\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1197721-1197752	32	MH791413	UNVERIFIED: Escherichia phage EcSzw_1, complete genome	62597-62628	10	0.688
NZ_CP023353_1	1.5\|1197721\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1197721-1197752	32	NC_028935	Escherichia phage SUSP2, complete genome	58756-58787	10	0.688
NZ_CP023353_1	1.6\|1197782\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1197782-1197813	32	MN693290	Marine virus AFVG_25M557, complete genome	19244-19275	10	0.688
NZ_CP023353_1	1.6\|1197782\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1197782-1197813	32	MN693243	Marine virus AFVG_25M556, complete genome	14971-15002	10	0.688
NZ_CP023353_1	1.9\|1197965\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1197965-1197996	32	NZ_CP022775	Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence	1222563-1222594	10	0.688
NZ_CP023353_1	1.9\|1197965\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1197965-1197996	32	NZ_CP022762	Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence	1140926-1140957	10	0.688
NZ_CP023353_1	1.9\|1197965\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1197965-1197996	32	NZ_CP023017	Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence	1200643-1200674	10	0.688
NZ_CP023353_1	1.9\|1197965\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1197965-1197996	32	NZ_CP014703	Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence	1140023-1140054	10	0.688
NZ_CP023353_1	1.9\|1197965\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1197965-1197996	32	NZ_CP022771	Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence	1140918-1140949	10	0.688
NZ_CP023353_1	1.9\|1197965\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1197965-1197996	32	NZ_CP022777	Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence	1140274-1140305	10	0.688
NZ_CP023353_1	1.9\|1197965\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1197965-1197996	32	NZ_CP022799	Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence	1140909-1140940	10	0.688
NZ_CP023353_1	1.9\|1197965\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1197965-1197996	32	NZ_CP022764	Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence	1222678-1222709	10	0.688
NZ_CP023353_1	1.9\|1197965\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1197965-1197996	32	NZ_CP022797	Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence	1222662-1222693	10	0.688
NZ_CP023353_1	1.9\|1197965\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1197965-1197996	32	NZ_CP022758	Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence	1222655-1222686	10	0.688
NZ_CP023353_1	1.12\|1198148\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1198148-1198179	32	MN657072	Psychrobacter sp. strain ANT_P36 plasmid pA36P2, complete sequence	2874-2905	10	0.688
NZ_CP023353_1	1.13\|1198209\|32\|NZ_CP023353\|PILER-CR,CRISPRCasFinder,CRT	1198209-1198240	32	NC_010625	Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence	1903726-1903757	10	0.688

1. spacer 2.2|1225925|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to LC542972 (Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence) position: , mismatch: 0, identity: 1.0

attttcgcagcgggtaaccgcgcccggcgatc	CRISPR spacer
attttcgcagcgggtaaccgcgcccggcgatc	Protospacer
********************************

2. spacer 2.5|1226108|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to LC542972 (Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence) position: , mismatch: 0, identity: 1.0

tttatgtggagtatcagtgcctgggtggaaag	CRISPR spacer
tttatgtggagtatcagtgcctgggtggaaag	Protospacer
********************************

3. spacer 2.6|1226169|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to LC542972 (Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence) position: , mismatch: 0, identity: 1.0

tggggctgagcatggctaaacaaccgaggcgc	CRISPR spacer
tggggctgagcatggctaaacaaccgaggcgc	Protospacer
********************************

4. spacer 2.7|1226230|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to LC542972 (Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence) position: , mismatch: 0, identity: 1.0

gtcaactggcaccacaggatgatggcggcgaa	CRISPR spacer
gtcaactggcaccacaggatgatggcggcgaa	Protospacer
********************************

5. spacer 2.8|1226291|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to LC542972 (Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence) position: , mismatch: 0, identity: 1.0

caggtcgaccgactggaggcggagattgtcgg	CRISPR spacer
caggtcgaccgactggaggcggagattgtcgg	Protospacer
********************************

6. spacer 2.9|1226352|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to LC542972 (Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence) position: , mismatch: 0, identity: 1.0

tgttgtttttctgccggattaacgcggtgcga	CRISPR spacer
tgttgtttttctgccggattaacgcggtgcga	Protospacer
********************************

7. spacer 2.10|1226413|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to LC542972 (Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence) position: , mismatch: 0, identity: 1.0

ccagcgaaggacttgctcgtgtggttaaagcc	CRISPR spacer
ccagcgaaggacttgctcgtgtggttaaagcc	Protospacer
********************************

8. spacer 4.1|3165218|40|NZ_CP023353|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 1, identity: 0.975

gcgctgcgggtcatttttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
***************.************************

9. spacer 5.1|4209776|42|NZ_CP023353|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 1, identity: 0.976

tgtcacacgcagataaatccaactttcaatattgttaagtcc	CRISPR spacer
tgtcacacgcagataaatccaactttcaatattgttaagttc	Protospacer
****************************************.*

10. spacer 5.2|4209835|40|NZ_CP023353|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 1, identity: 0.975

catggcgtagcaaaaagaaattttcaatattgctttatgg	CRISPR spacer
catggcgtagaaaaaagaaattttcaatattgctttatgg	Protospacer
********** *****************************

11. spacer 1.4|1197660|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021720 (Escherichia coli strain AR_0128 plasmid tig00000793, complete sequence) position: , mismatch: 2, identity: 0.938

agcaacaggtatttcatatggcctgccgtgct	CRISPR spacer
agcaacgggtatttcaaatggcctgccgtgct	Protospacer
******.********* ***************

12. spacer 1.4|1197660|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020051 (Escherichia coli strain AR_0118 plasmid unitig_3, complete sequence) position: , mismatch: 2, identity: 0.938

agcaacaggtatttcatatggcctgccgtgct	CRISPR spacer
agcaacgggtatttcaaatggcctgccgtgct	Protospacer
******.********* ***************

13. spacer 1.4|1197660|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to KP869108 (Escherichia coli O157 typing phage 10, complete genome) position: , mismatch: 2, identity: 0.938

agcaacaggtatttcatatggcctgccgtgct	CRISPR spacer
agcaactggtatttcaaatggcctgccgtgct	Protospacer
****** ********* ***************

14. spacer 1.4|1197660|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to KP869107 (Escherichia coli O157 typing phage 9, partial genome) position: , mismatch: 2, identity: 0.938

agcaacaggtatttcatatggcctgccgtgct	CRISPR spacer
agcaactggtatttcaaatggcctgccgtgct	Protospacer
****** ********* ***************

15. spacer 1.4|1197660|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to NC_019711 (Enterobacteria phage HK629, complete genome) position: , mismatch: 2, identity: 0.938

agcaacaggtatttcatatggcctgccgtgct	CRISPR spacer
agcaactggtatttcaaatggcctgccgtgct	Protospacer
****** ********* ***************

16. spacer 1.4|1197660|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to NC_007804 (Escherichia phage phiV10, complete genome) position: , mismatch: 2, identity: 0.938

agcaacaggtatttcatatggcctgccgtgct	CRISPR spacer
agcaactggtatttcaaatggcctgccgtgct	Protospacer
****** ********* ***************

17. spacer 1.4|1197660|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to DQ126339 (Enterobacteria phage phiV10, complete genome) position: , mismatch: 2, identity: 0.938

agcaacaggtatttcatatggcctgccgtgct	CRISPR spacer
agcaactggtatttcaaatggcctgccgtgct	Protospacer
****** ********* ***************

18. spacer 1.4|1197660|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to MT225100 (Escherichia phage Lys8385Vzw, complete genome) position: , mismatch: 2, identity: 0.938

agcaacaggtatttcatatggcctgccgtgct	CRISPR spacer
agcaactggtatttcaaatggcctgccgtgct	Protospacer
****** ********* ***************

19. spacer 1.19|1198575|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to KT898133 (Aeromonas phage phiARM81ld, complete genome) position: , mismatch: 2, identity: 0.938

gacgatgagacgccctggtgtgccgcgttcgt	CRISPR spacer
gacgacgagacgccctggtgcgccgcgttcgt	Protospacer
*****.**************.***********

20. spacer 3.1|2423383|38|NZ_CP023353|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

21. spacer 2.7|1226230|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to MN855767 (Bacteriophage sp. isolate 11, complete genome) position: , mismatch: 5, identity: 0.844

gtcaactggcaccacaggatgatggcggcgaa	CRISPR spacer
gttaactggcaccacaagatgatggcggcttc	Protospacer
**.*************.************

22. spacer 1.5|1197721|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006570 (Sodalis praecaptivus strain HS1 plasmid pHS1, complete sequence) position: , mismatch: 6, identity: 0.812

gccagcggcgctgagtacgacgacctgattaa	CRISPR spacer
gaccgaggcgcagagaacgacgacctgattat	Protospacer
* * * ***** *** ***************

23. spacer 2.8|1226291|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to NC_013855 (Azospirillum sp. B510 plasmid pAB510a, complete sequence) position: , mismatch: 6, identity: 0.812

caggtcgaccgactggaggcggagattgtcgg-	CRISPR spacer
ccggtcgacccgctggaggcggaga-tgtagac	Protospacer
* ******** .************* *** *.

24. spacer 1.5|1197721|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047145 (Streptomyces sp. HF10 plasmid plas1, complete sequence) position: , mismatch: 7, identity: 0.781

gccagcggcgctgagtacgacgac--ctgattaa	CRISPR spacer
gccagcggcgcggactacgacgacatccggct--	Protospacer
*********** ** *********  *.*..*

25. spacer 2.2|1225925|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP036405 (Komagataeibacter saccharivorans strain JH1 plasmid p221732, complete sequence) position: , mismatch: 7, identity: 0.781

attttcgcagcgggtaaccgcgcccggcgatc	CRISPR spacer
cgtgacgcagcgggcagccgcgcccggcgata	Protospacer
  *  *********.*.**************

26. spacer 2.2|1225925|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023037 (Komagataeibacter saccharivorans strain CV1 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

attttcgcagcgggtaaccgcgcccggcgatc	CRISPR spacer
cgtgacgcagcgggcagccgcgcccggcgata	Protospacer
  *  *********.*.**************

27. spacer 2.7|1226230|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP017656 (Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence) position: , mismatch: 7, identity: 0.781

gtcaactggcaccacaggatgatggcggcgaa	CRISPR spacer
atggacatgcaccagaagatgatggcggcgaa	Protospacer
.* .**  ****** *.***************

28. spacer 1.2|1197538|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to MN855878 (Bacteriophage sp. isolate 336, complete genome) position: , mismatch: 8, identity: 0.75

agtaagccggttgattatcgcca----gggatatta	CRISPR spacer
agtaagcaggatgattatcgccaccatggcgt----	Protospacer
******* ** ************    ** .*

29. spacer 1.5|1197721|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP017656 (Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence) position: , mismatch: 8, identity: 0.75

gccagcggcgctgagtacgacgacctgattaa	CRISPR spacer
gcccgcggcgctgagtgcgacgaccatgctct	Protospacer
*** ************.********  ..*

30. spacer 1.5|1197721|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011450 (Sphingomonas sanxanigenens DSM 19645 = NX02 plasmid pNXO2, complete sequence) position: , mismatch: 8, identity: 0.75

gccagcggcgctgagtacgacgacctgattaa	CRISPR spacer
gcccgcggcgctgagtgcgacgaccatgctct	Protospacer
*** ************.********  ..*

31. spacer 1.11|1198087|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to MK373778 (Escherichia phage vB_EcoM_WFbE185, complete genome) position: , mismatch: 8, identity: 0.75

ccattcttgttgtcgttcatcaagcgcagggg	CRISPR spacer
ccattcttgttcgcgttcatcaaatacaacag	Protospacer
***********  **********...**. .*

32. spacer 1.11|1198087|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to LR027383 (Escherichia virus vB_Eco_mar005P1 strain vB_Eco_mar007P3 genome assembly, chromosome: 1) position: , mismatch: 8, identity: 0.75

ccattcttgttgtcgttcatcaagcgcagggg	CRISPR spacer
ccattcttgttcgcgttcatcaaatacaacag	Protospacer
***********  **********...**. .*

33. spacer 1.11|1198087|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to MN864145 (Escherichia phage F2, complete genome) position: , mismatch: 8, identity: 0.75

ccattcttgttgtcgttcatcaagcgcagggg	CRISPR spacer
ccattcttgttcgcgttcatcaaatacaacag	Protospacer
***********  **********...**. .*

34. spacer 1.11|1198087|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to LR027391 (Escherichia virus vB_Eco_mar005P1 strain vB_Eco_mar009P5 genome assembly, chromosome: 1) position: , mismatch: 8, identity: 0.75

ccattcttgttgtcgttcatcaagcgcagggg	CRISPR spacer
ccattcttgttcgcgttcatcaaatacaacag	Protospacer
***********  **********...**. .*

35. spacer 1.11|1198087|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to LR027386 (Escherichia virus vB_Eco_mar005P1 strain vB_Eco_mar008P4 genome assembly, chromosome: 1) position: , mismatch: 8, identity: 0.75

ccattcttgttgtcgttcatcaagcgcagggg	CRISPR spacer
ccattcttgttcgcgttcatcaaatacaacag	Protospacer
***********  **********...**. .*

36. spacer 1.11|1198087|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to LR027390 (Escherichia virus vB_Eco_mar005P1 genome assembly, chromosome: 1) position: , mismatch: 8, identity: 0.75

ccattcttgttgtcgttcatcaagcgcagggg	CRISPR spacer
ccattcttgttcgcgttcatcaaatacaacag	Protospacer
***********  **********...**. .*

37. spacer 1.11|1198087|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to LR027387 (Escherichia virus vB_Eco_mar005P1 strain vB_Eco_mar006P2 genome assembly, chromosome: 1) position: , mismatch: 8, identity: 0.75

ccattcttgttgtcgttcatcaagcgcagggg	CRISPR spacer
ccattcttgttcgcgttcatcaaatacaacag	Protospacer
***********  **********...**. .*

38. spacer 1.11|1198087|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to MN850651 (Escherichia phage moskry, complete genome) position: , mismatch: 8, identity: 0.75

ccattcttgttgtcgttcatcaagcgcagggg	CRISPR spacer
ccattcttgttcgcgttcatcaaatacaacag	Protospacer
***********  **********...**. .*

39. spacer 1.11|1198087|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to NC_018855 (Enterobacteria phage HX01, complete genome) position: , mismatch: 8, identity: 0.75

ccattcttgttgtcgttcatcaagcgcagggg	CRISPR spacer
ccattcttgttcgcgttcatcaaatacaacag	Protospacer
***********  **********...**. .*

40. spacer 1.11|1198087|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to MG589383 (Shigella phage phi25-307, complete genome) position: , mismatch: 8, identity: 0.75

ccattcttgttgtcgttcatcaagcgcagggg	CRISPR spacer
ccattcttgttcgcgttcatcaaatacaacag	Protospacer
***********  **********...**. .*

41. spacer 1.11|1198087|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to MH243438 (Escherichia phage vB_EcoM_NBG1, complete genome) position: , mismatch: 8, identity: 0.75

ccattcttgttgtcgttcatcaagcgcagggg	CRISPR spacer
ccattcttgttcgcgttcatcaaatacaacag	Protospacer
***********  **********...**. .*

42. spacer 1.11|1198087|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to NC_024124 (Escherichia phage vB_EcoM_JS09, complete genome) position: , mismatch: 8, identity: 0.75

ccattcttgttgtcgttcatcaagcgcagggg	CRISPR spacer
ccattcttgttcgcgttcatcaaatacaacag	Protospacer
***********  **********...**. .*

43. spacer 1.11|1198087|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to MK327934 (Escherichia phage vB_EcoM_G2469, complete genome) position: , mismatch: 8, identity: 0.75

ccattcttgttgtcgttcatcaagcgcagggg	CRISPR spacer
ccattcttgttcacgttcatcaaatacaacag	Protospacer
***********  **********...**. .*

44. spacer 1.13|1198209|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to MN855880 (Siphoviridae sp. isolate 369, complete genome) position: , mismatch: 8, identity: 0.75

atttttgcgcggcctgcatgaaaccagtggca	CRISPR spacer
tgttttgcggggccttcatgaaaccaggcggg	Protospacer
  ******* ***** ***********  * .

45. spacer 1.19|1198575|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to MN901520 (Halorubrum coriense virus Hardycor2, complete genome) position: , mismatch: 8, identity: 0.75

--gacgatgagacgccctggtgtgccgcgttcgt	CRISPR spacer
ccgccgcc--gacgctcgggtgtgccgcgttcgg	Protospacer
  * ** .  *****.* ***************

46. spacer 2.1|1225864|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to MG925351 (Mycobacterium phage MPlant7149, complete genome) position: , mismatch: 8, identity: 0.75

acaatcagatcacgatcgatgcctcgcgtgag	CRISPR spacer
tccatcagatcacggccgatgcctcgggcgtc	Protospacer
 * ***********..********** *.*

47. spacer 2.3|1225986|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025411 (Paracoccus sp. BM15 plasmid pBM153, complete sequence) position: , mismatch: 8, identity: 0.75

ctcgtacgccgtctcactccgcgtgagtgtga	CRISPR spacer
cgcccgcgccgcctcacgccgcgtgagtgcgc	Protospacer
* * ..*****.***** ***********.*

48. spacer 2.8|1226291|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016821 (Rhodococcus sp. p52 plasmid pDF01, complete sequence) position: , mismatch: 8, identity: 0.75

caggtcgaccgactggaggcggagattgtcgg	CRISPR spacer
aagatcgaccgactggaggccgagaacgcggc	Protospacer
 **.**************** **** .*. *

49. spacer 2.8|1226291|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016821 (Rhodococcus sp. p52 plasmid pDF01, complete sequence) position: , mismatch: 8, identity: 0.75

caggtcgaccgactggaggcggagattgtcgg	CRISPR spacer
aagatcgaccgactggaggccgagaacgcggc	Protospacer
 **.**************** **** .*. *

50. spacer 1.5|1197721|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011515 (Mitsuaria sp. 7 plasmid, complete sequence) position: , mismatch: 9, identity: 0.719

gccagcggcgctgagtacgacgacctgattaa	CRISPR spacer
gctggcggtgctgaggacgacgacctgcagcg	Protospacer
**..****.****** ***********    .

51. spacer 1.11|1198087|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to MN850579 (Escherichia phage mogra, complete genome) position: , mismatch: 9, identity: 0.719

ccattcttgttgtcgttcatcaagcgcagggg	CRISPR spacer
ccattcttgttcgcgttcatcaaataaaacag	Protospacer
***********  **********... *. .*

52. spacer 1.11|1198087|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to MK962754 (Shigella phage JK36, complete genome) position: , mismatch: 9, identity: 0.719

ccattcttgttgtcgttcatcaagcgcagggg	CRISPR spacer
ccattcttgttcgcgttcatcaaataaaacag	Protospacer
***********  **********... *. .*

53. spacer 1.11|1198087|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to MK962756 (Shigella phage JK42, complete genome) position: , mismatch: 9, identity: 0.719

ccattcttgttgtcgttcatcaagcgcagggg	CRISPR spacer
ccattcttgttcgcgttcatcaaataaaacag	Protospacer
***********  **********... *. .*

54. spacer 1.11|1198087|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to MK327933 (Escherichia phage vB_EcoM_G2285, complete genome) position: , mismatch: 9, identity: 0.719

ccattcttgttgtcgttcatcaagcgcagggg	CRISPR spacer
ccattcttgttcgcgttcatcaaataaaacag	Protospacer
***********  **********... *. .*

55. spacer 1.11|1198087|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to MN850590 (Escherichia phage moha, complete genome) position: , mismatch: 9, identity: 0.719

ccattcttgttgtcgttcatcaagcgcagggg	CRISPR spacer
ccattcttgttcgcgttcatcaaataaaacag	Protospacer
***********  **********... *. .*

56. spacer 1.13|1198209|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016463 (Bosea sp. RAC05 plasmid pBSY19_1, complete sequence) position: , mismatch: 9, identity: 0.719

atttttgcgcggcctgcatgaaaccagtggca	CRISPR spacer
gtcattccgccgcctgcatgaaaccaggcgtc	Protospacer
.*. ** *** ****************  *.

57. spacer 2.2|1225925|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 9, identity: 0.719

attttcgcagcgggtaaccgcgcccggcgatc	CRISPR spacer
ggtcgcgcagcgggtgaccgcgctcggcggcg	Protospacer
. *. **********.*******.*****..

58. spacer 1.1|1197477|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to MN693097 (Marine virus AFVG_25M78, complete genome) position: , mismatch: 10, identity: 0.688

ttggggctggggttcggtaatcagattattga	CRISPR spacer
accagatatgggttaggtaatcatattattga	Protospacer
 . .*..  ***** ******** ********

59. spacer 1.5|1197721|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to MN850587 (Escherichia phage mistaenkt, complete genome) position: , mismatch: 10, identity: 0.688

gccagcggcgctgagtacgacgacctgattaa	CRISPR spacer
tctctaaaagctgtctacgacgacctgattaa	Protospacer
 *.   .. ****  *****************

60. spacer 1.5|1197721|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to MH791400 (UNVERIFIED: Escherichia phage EcSzw-2, complete genome) position: , mismatch: 10, identity: 0.688

gccagcggcgctgagtacgacgacctgattaa	CRISPR spacer
tctctaaaagctgtctacgacgacctgattaa	Protospacer
 *.   .. ****  *****************

61. spacer 1.5|1197721|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to MK562504 (Enterobacteria phage CHB7, complete genome) position: , mismatch: 10, identity: 0.688

gccagcggcgctgagtacgacgacctgattaa	CRISPR spacer
tctctaaaagctgtctacgacgacctgattaa	Protospacer
 *.   .. ****  *****************

62. spacer 1.5|1197721|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to NC_028808 (Escherichia phage SUSP1, complete genome) position: , mismatch: 10, identity: 0.688

gccagcggcgctgagtacgacgacctgattaa	CRISPR spacer
tctctaaaagctgtctacgacgacctgattaa	Protospacer
 *.   .. ****  *****************

63. spacer 1.5|1197721|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to MH791413 (UNVERIFIED: Escherichia phage EcSzw_1, complete genome) position: , mismatch: 10, identity: 0.688

gccagcggcgctgagtacgacgacctgattaa	CRISPR spacer
tctctaaaagctgtctacgacgacctgattaa	Protospacer
 *.   .. ****  *****************

64. spacer 1.5|1197721|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to NC_028935 (Escherichia phage SUSP2, complete genome) position: , mismatch: 10, identity: 0.688

gccagcggcgctgagtacgacgacctgattaa	CRISPR spacer
tctctaaaagctgtctacgacgacctgattaa	Protospacer
 *.   .. ****  *****************

65. spacer 1.6|1197782|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to MN693290 (Marine virus AFVG_25M557, complete genome) position: , mismatch: 10, identity: 0.688

tcaatacaacagcaatgctggagctggaaaaa	CRISPR spacer
ctcaagtaacatcaatgctgtagctggaaatg	Protospacer
.. * ..**** ******** ********* .

66. spacer 1.6|1197782|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to MN693243 (Marine virus AFVG_25M556, complete genome) position: , mismatch: 10, identity: 0.688

tcaatacaacagcaatgctggagctggaaaaa	CRISPR spacer
ctcaagtaacatcaatgctgtagctggaaatg	Protospacer
.. * ..**** ******** ********* .

67. spacer 1.9|1197965|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022775 (Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

agattcgcgcaatgtacggtaaagacagcacc	CRISPR spacer
cgactcgcgcaatgtccggtaaagggttgggc	Protospacer
 **.*********** ********.    . *

68. spacer 1.9|1197965|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022762 (Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

agattcgcgcaatgtacggtaaagacagcacc	CRISPR spacer
cgactcgcgcaatgtccggtaaagggttgggc	Protospacer
 **.*********** ********.    . *

69. spacer 1.9|1197965|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023017 (Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

agattcgcgcaatgtacggtaaagacagcacc	CRISPR spacer
cgactcgcgcaatgtccggtaaagggttgggc	Protospacer
 **.*********** ********.    . *

70. spacer 1.9|1197965|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014703 (Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence) position: , mismatch: 10, identity: 0.688

agattcgcgcaatgtacggtaaagacagcacc	CRISPR spacer
cgactcgcgcaatgtccggtaaagggttgggc	Protospacer
 **.*********** ********.    . *

71. spacer 1.9|1197965|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022771 (Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

agattcgcgcaatgtacggtaaagacagcacc	CRISPR spacer
cgactcgcgcaatgtccggtaaagggttgggc	Protospacer
 **.*********** ********.    . *

72. spacer 1.9|1197965|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022777 (Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

agattcgcgcaatgtacggtaaagacagcacc	CRISPR spacer
cgactcgcgcaatgtccggtaaagggttgggc	Protospacer
 **.*********** ********.    . *

73. spacer 1.9|1197965|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022799 (Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

agattcgcgcaatgtacggtaaagacagcacc	CRISPR spacer
cgactcgcgcaatgtccggtaaagggttgggc	Protospacer
 **.*********** ********.    . *

74. spacer 1.9|1197965|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022764 (Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

agattcgcgcaatgtacggtaaagacagcacc	CRISPR spacer
cgactcgcgcaatgtccggtaaagggttgggc	Protospacer
 **.*********** ********.    . *

75. spacer 1.9|1197965|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022797 (Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

agattcgcgcaatgtacggtaaagacagcacc	CRISPR spacer
cgactcgcgcaatgtccggtaaagggttgggc	Protospacer
 **.*********** ********.    . *

76. spacer 1.9|1197965|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022758 (Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

agattcgcgcaatgtacggtaaagacagcacc	CRISPR spacer
cgactcgcgcaatgtccggtaaagggttgggc	Protospacer
 **.*********** ********.    . *

77. spacer 1.12|1198148|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to MN657072 (Psychrobacter sp. strain ANT_P36 plasmid pA36P2, complete sequence) position: , mismatch: 10, identity: 0.688

tttgttttgatgatttatcagtatatgaattg	CRISPR spacer
aagattttgatgatttatcagaagatgttcag	Protospacer
   .***************** * ***  . *

78. spacer 1.13|1198209|32|NZ_CP023353|PILER-CR,CRISPRCasFinder,CRT matches to NC_010625 (Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence) position: , mismatch: 10, identity: 0.688

atttttgcgcggcctgcatgaaaccagtggca	CRISPR spacer
cgaggtgcgcagcctgcatgaaacctgtgatg	Protospacer
     *****.************** ***...

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1242828 : 1249968

Escherichia_phage(83.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001278994.1\|1242828_1243467_-	aldolase	A0A077SK32	Escherichia_phage	1.4e-82	75.0
WP_001551546.1\|1243463_1244726_-	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	3.7e-135	61.2
WP_000847985.1\|1244722_1245631_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	3.0e-118	76.9
WP_001596096.1\|1245826_1246594_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-70	57.1
WP_001141345.1\|1246644_1247301_-	protein-serine/threonine phosphatase	A0A077SLQ6	Escherichia_phage	5.0e-51	47.0
WP_001272891.1\|1247406_1249968_-	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	2.7e-31	20.7

DBSCAN-SWA_2

1851937 : 1861380

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000569343.1\|1851937_1852864_+	glycine betaine ABC transporter ATP binding protein YehX	G3M9Y6	Bacillus_virus	1.3e-23	30.8
WP_000783134.1\|1852868_1853600_+	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_001216963.1\|1853580_1853688_-	protein YohO	NA	NA	NA	NA
WP_001240398.1\|1853747_1854479_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	2.8e-111	99.0
WP_001295431.1\|1854700_1856386_+	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
WP_001308766.1\|1856382_1857102_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001295430.1\|1857148_1857619_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
WP_001295429.1\|1857660_1858122_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	1.9e-76	100.0
WP_001551351.1\|1858246_1860247_-	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	95.7
WP_001551350.1\|1860243_1861380_-	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	5.0e-163	97.4

DBSCAN-SWA_3

1957313 : 1965970

Enterobacteria_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064770392.1\|1957313_1958708_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	2.4e-18	31.9
WP_000183060.1\|1958882_1959776_+	UTP--glucose-1-phosphate uridylyltransferase GalF	A0A127AW70	Bacillus_phage	1.0e-46	42.0
WP_032084602.1\|1960148_1961234_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	5.2e-101	53.9
WP_053273168.1\|1961233_1962133_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	9.7e-29	34.8
WP_064770391.1\|1962190_1963066_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	5.6e-106	64.1
WP_052925276.1\|1963074_1963629_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.7e-47	56.3
WP_064759649.1\|1963637_1964876_+	flippase	NA	NA	NA	NA
WP_052925274.1\|1964878_1965970_+	UDP-galactopyranose mutase	E4ZFQ1	Streptococcus_phage	1.9e-140	64.4

DBSCAN-SWA_4

2496844 : 2565782

Enterobacteria_phage(44.23%)

tail,terminase,portal,lysis,integrase,protease

attL 2504420:2504435|attR 2534830:2534845

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001260850.1\|2496844_2497666_-\|protease	serine protease	NA	NA	NA	NA
WP_000233090.1\|2497765_2497849_-	hypothetical protein	NA	NA	NA	NA
WP_000743943.1\|2497941_2498277_-	acid shock protein	NA	NA	NA	NA
WP_000091840.1\|2498673_2499927_-	MFS transporter	NA	NA	NA	NA
WP_001019558.1\|2500033_2500927_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000225276.1\|2501061_2502282_+	DNA-binding transcriptional repressor Mlc	NA	NA	NA	NA
WP_000919226.1\|2502406_2503102_+	ATP-dependent dethiobiotin synthetase BioD	NA	NA	NA	NA
WP_071600869.1\|2503054_2504347_-	voltage-gated ClC-type chloride channel ClcB	NA	NA	NA	NA
2504420:2504435	attL	NA	NA	NA	NA
WP_001595811.1\|2504505_2505120_-	Tat proofreading chaperone DmsD	A0A077SLS7	Escherichia_phage	1.9e-28	35.8
WP_001595810.1\|2505162_2506017_-	dimethyl sulfoxide reductase anchor subunit	NA	NA	NA	NA
WP_000213028.1\|2506018_2506636_-	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	9.5e-76	59.6
WP_072141759.1\|2506646_2509070_-	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	1.7e-208	48.6
WP_000041647.1\|2509130_2511557_-	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	3.8e-213	49.1
WP_001295396.1\|2511755_2512061_-	DUF1161 domain-containing protein	NA	NA	NA	NA
WP_032158983.1\|2512168_2512879_+	YnfC family lipoprotein	NA	NA	NA	NA
WP_001138584.1\|2512881_2513442_-	spermidine N1-acetyltransferase	NA	NA	NA	NA
WP_000705205.1\|2513476_2513818_-	DUF1283 family protein	NA	NA	NA	NA
WP_001306081.1\|2513952_2514279_+	YnfA family protein	A0A218MNG8	uncultured_virus	7.6e-24	55.6
WP_001295394.1\|2514484_2515699_+	starvation-sensing protein RspA	Q6A202	Oenococcus_phage	1.4e-46	29.0
WP_000836037.1\|2515710_2516730_+	Zn-dependent oxidoreductase	E3SJ82	Synechococcus_phage	4.3e-17	26.2
WP_001389342.1\|2516787_2516916_+	hypothetical protein	NA	NA	NA	NA
WP_001557866.1\|2516917_2518198_-\|integrase	site-specific integrase	B6DZ48	Enterobacteria_phage	1.9e-155	62.3
WP_001296941.1\|2518232_2518469_-	excisionase family protein	S4TND0	Salmonella_phage	6.1e-15	50.7
WP_000048387.1\|2518556_2521028_-	exonuclease	A0A192Y6E0	Salmonella_phage	9.4e-58	55.6
WP_001090200.1\|2521121_2521313_-	DUF1482 family protein	NA	NA	NA	NA
WP_000854561.1\|2521309_2521498_-	cell division inhibition protein DicB	NA	NA	NA	NA
WP_000344950.1\|2521984_2522560_-	hypothetical protein	NA	NA	NA	NA
WP_000379589.1\|2522561_2522717_-	DUF1391 domain-containing protein	M4QQ57	Salicola_phage	8.8e-07	51.1
WP_000381213.1\|2522884_2523292_-	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	1.2e-31	51.9
WP_000921592.1\|2523372_2523600_+	transcriptional regulator	NA	NA	NA	NA
WP_000705387.1\|2523583_2524105_+	hypothetical protein	NA	NA	NA	NA
WP_129766576.1\|2524085_2525051_+	hypothetical protein	U5P0A0	Shigella_phage	2.6e-56	60.8
WP_001151230.1\|2525091_2525490_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	2.9e-62	93.2
WP_096035166.1\|2525692_2526358_+	epoxyqueuosine reductase QueH	NA	NA	NA	NA
WP_001265627.1\|2526566_2527181_+	hypothetical protein	NA	NA	NA	NA
WP_001323870.1\|2527177_2528206_+	DUF4868 domain-containing protein	NA	NA	NA	NA
WP_000887491.1\|2528556_2528769_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	1.7e-29	97.1
WP_000980983.1\|2528985_2529237_+	hypothetical protein	NA	NA	NA	NA
WP_023140913.1\|2529303_2529582_+	hypothetical protein	A0A077KB22	Edwardsiella_phage	6.1e-06	37.1
WP_001578393.1\|2529583_2530633_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	2.2e-112	57.0
WP_096035167.1\|2530646_2531399_+	antitermination protein	A0A192Y5X6	Salmonella_phage	9.3e-134	92.8
WP_120795389.1\|2531676_2531766_-	Qin prophage; protein YnfS	NA	NA	NA	NA
WP_000087756.1\|2531820_2532033_-	cold shock-like protein CspF	NA	NA	NA	NA
WP_000066484.1\|2532333_2532549_+	cold shock-like protein CspB	A0A1W6JNX5	Morganella_phage	3.4e-25	76.5
WP_000839590.1\|2533302_2533518_+\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	1.1e-31	94.4
WP_001309518.1\|2533501_2533834_+	DUF1327 domain-containing protein	K7PGU6	Enterobacteria_phage	1.1e-25	64.3
WP_001092971.1\|2533830_2534364_+	lysozyme	K7PLY1	Enterobacteria_phage	6.4e-97	93.2
WP_001071769.1\|2534360_2534858_+	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	2.9e-06	29.5
2534830:2534845	attR	NA	NA	NA	NA
WP_000066495.1\|2535221_2535434_+	cold shock protein CspI	A0A1W6JNX5	Morganella_phage	1.2e-22	74.3
WP_071524604.1\|2535444_2535633_+	cold-shock protein	NA	NA	NA	NA
WP_122134696.1\|2535635_2535701_+	hypothetical protein	NA	NA	NA	NA
WP_001309517.1\|2535780_2535936_+	hypothetical protein	NA	NA	NA	NA
WP_001019606.1\|2536107_2536281_+	addiction module toxin, GnsA/GnsB family	NA	NA	NA	NA
WP_000035574.1\|2536432_2536843_-	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	2.1e-63	89.0
WP_001031431.1\|2537143_2537350_+	hypothetical protein	A0A0K2FJ18	Enterobacteria_phage	6.7e-26	91.2
WP_000421823.1\|2537918_2538458_+	DUF1441 family protein	A5LH26	Enterobacteria_phage	1.8e-94	99.4
WP_000507036.1\|2538466_2540566_+\|terminase	phage terminase large subunit family protein	A5LH27	Enterobacteria_phage	0.0e+00	96.6
WP_001595798.1\|2540562_2540775_+	hypothetical protein	A5LH28	Enterobacteria_phage	3.2e-31	98.6
WP_001595796.1\|2540774_2542283_+\|portal	phage portal protein	A5LH29	Enterobacteria_phage	7.8e-289	99.4
WP_001595795.1\|2542227_2544255_+\|protease	Clp protease ClpP	K7PGT6	Enterobacteria_phage	0.0e+00	99.5
WP_001097039.1\|2544341_2544665_+	DUF2190 family protein	K7PLV6	Enterobacteria_phage	1.5e-51	99.1
WP_001283153.1\|2544657_2544933_+	DNA breaking-rejoining protein	K7PH43	Enterobacteria_phage	2.3e-45	100.0
WP_000677102.1\|2544944_2545523_+\|tail	phage tail protein	A5LH33	Enterobacteria_phage	1.2e-101	99.5
WP_001079419.1\|2545519_2545921_+\|tail	tail protein	A5LH34	Enterobacteria_phage	1.9e-72	99.2
WP_001595794.1\|2545931_2546675_+\|tail	phage tail protein	A5LH35	Enterobacteria_phage	5.0e-132	98.8
WP_001299384.1\|2546735_2547122_+\|tail	phage minor tail protein G	A0A291AWW5	Escherichia_phage	4.7e-65	99.2
WP_001161009.1\|2547130_2547460_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	7.6e-56	100.0
WP_001595793.1\|2547431_2550497_+\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	0.0e+00	98.7
WP_000447248.1\|2550496_2550826_+\|tail	phage tail protein	A0A291AWW9	Escherichia_phage	1.7e-60	100.0
WP_001152402.1\|2550835_2551534_+\|tail	phage minor tail protein L	A5LH40	Enterobacteria_phage	5.1e-134	99.1
WP_019843088.1\|2551539_2552283_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	5.9e-149	98.0
WP_096035168.1\|2552180_2552828_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	9.5e-111	96.7
WP_096035169.1\|2552888_2556368_+	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	90.3
WP_001228252.1\|2556435_2557035_+	Ail/Lom family outer membrane beta-barrel protein	Q9EV15	Enterobacteria_phage	3.4e-102	92.5
WP_096035170.1\|2557099_2559499_+\|tail	phage tail protein	A0A0E3M194	Enterobacteria_phage	6.6e-133	55.0
WP_000654150.1\|2559495_2559777_+	hypothetical protein	A0A1X7QHA1	Escherichia_phage	2.4e-18	50.0
WP_096035171.1\|2559786_2560491_+\|tail	tail fiber domain-containing protein	A0A1X7QGH6	Escherichia_phage	1.2e-58	61.7
WP_000355609.1\|2560501_2560795_+	hypothetical protein	NA	NA	NA	NA
WP_000086527.1\|2561022_2561613_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	1.6e-24	38.8
WP_000836768.1\|2561929_2562163_-	cold shock protein YdfK	A0A192Y6D5	Salmonella_phage	1.1e-32	88.3
WP_120795384.1\|2562231_2562345_-	Rac prophage; protein YnaM	A0A1C9IHU6	Salmonella_phage	8.4e-07	80.6
WP_000347485.1\|2562948_2564232_+	MHS family MFS transporter	NA	NA	NA	NA
WP_000527819.1\|2564321_2565782_+	mannitol dehydrogenase family protein	G8DCZ3	Micromonas_pusilla_virus	5.1e-43	29.9

DBSCAN-SWA_5

2721561 : 2834566

109

Escherichia_phage(50.0%)

tail,terminase,tRNA,transposase,portal,head,lysis,integrase,capsid

attL 2738782:2738796|attR 2832014:2832028

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001595397.1\|2721561_2722020_-\|transposase	IS200/IS605 family transposase	I4AZI8	Saccharomonospora_phage	1.0e-13	32.3
WP_001296778.1\|2722196_2722421_-	YdcH family protein	NA	NA	NA	NA
WP_000375956.1\|2722560_2724216_-	glucan biosynthesis protein	NA	NA	NA	NA
WP_001595710.1\|2724440_2725784_-	VOC family protein	NA	NA	NA	NA
WP_000414564.1\|2726000_2726924_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_001595709.1\|2726962_2728603_-	methyl-accepting chemotaxis protein Trg	NA	NA	NA	NA
WP_085948682.1\|2728978_2730347_+\|transposase	IS3-like element IS150 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	4.8e-112	99.5
WP_001309484.1\|2730447_2730597_+	type I toxin-antitoxin system toxin HokB	NA	NA	NA	NA
WP_001595708.1\|2730668_2730842_-	hypothetical protein	A0A0R6PI25	Moraxella_phage	7.6e-07	59.6
WP_001590124.1\|2731086_2731617_-	cytochrome b561	A0A0U2QLA7	Escherichia_phage	2.0e-18	43.9
WP_001595707.1\|2731805_2732807_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_001595706.1\|2732848_2734288_-	aldehyde dehydrogenase	NA	NA	NA	NA
WP_001595705.1\|2734484_2735285_-	YdcF family protein	NA	NA	NA	NA
WP_000343026.1\|2735400_2735778_-	hypothetical protein	NA	NA	NA	NA
WP_001314706.1\|2735897_2736347_-	hypothetical protein	NA	NA	NA	NA
WP_001523214.1\|2736333_2736672_-	hypothetical protein	NA	NA	NA	NA
WP_001595704.1\|2736956_2740859_-	ATP-dependent RNA helicase HrpA	A0A1V0SIV3	Klosneuvirus	2.2e-53	29.5
2738782:2738796	attL	NA	NA	NA	NA
WP_000048963.1\|2741059_2741665_+	FMN-dependent NADH-azoreductase	NA	NA	NA	NA
WP_001563833.1\|2741778_2742639_-	pyridoxine 4-dehydrogenase	NA	NA	NA	NA
WP_019842676.1\|2742846_2749338_-	autotransporter domain-containing protein	NA	NA	NA	NA
WP_001551079.1\|2749668_2750259_-	phenylacetic acid degradation protein PaaY	NA	NA	NA	NA
WP_001551078.1\|2750240_2751191_-	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA
WP_000632281.1\|2751291_2752605_-	phenylacetate--CoA ligase	NA	NA	NA	NA
WP_001206190.1\|2752631_2753837_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA
WP_001551077.1\|2753836_2754259_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA
WP_019842675.1\|2754251_2755676_-	3-hydroxyacyl-CoA dehydrogenase PaaC	NA	NA	NA	NA
WP_001551075.1\|2755677_2756466_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA
WP_001551074.1\|2756465_2757233_-	2,3-dehydroadipyl-CoA hydratase	NA	NA	NA	NA
WP_001551073.1\|2757229_2758300_-	phenylacetate-CoA oxygenase/reductase subunit PaaK	NA	NA	NA	NA
WP_001189203.1\|2758307_2758805_-	phenylacetate degradation protein PaaD	NA	NA	NA	NA
WP_096035174.1\|2758819_2759566_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA
WP_000073393.1\|2759574_2759862_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA
WP_071591516.1\|2759873_2760839_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA
WP_001551071.1\|2761087_2763133_+	phenylacetic acid degradation bifunctional protein PaaZ	NA	NA	NA	NA
WP_000535436.1\|2763380_2765654_+	primary-amine oxidase	NA	NA	NA	NA
WP_001551070.1\|2765712_2767212_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_001067519.1\|2767447_2768353_+	transcriptional regulator FeaR	NA	NA	NA	NA
WP_001306533.1\|2768524_2768851_-	YdbL family protein	NA	NA	NA	NA
WP_000698145.1\|2768858_2769044_-	YnbE family lipoprotein	NA	NA	NA	NA
WP_001595701.1\|2769040_2771680_-	YdbH family protein	NA	NA	NA	NA
WP_000762229.1\|2771887_2772877_+	D-lactate dehydrogenase	M1I4S0	Paramecium_bursaria_Chlorella_virus	2.5e-70	44.0
WP_001523197.1\|2772987_2773410_+	heat shock protein HslJ	NA	NA	NA	NA
WP_001295715.1\|2773406_2773673_-	DUF333 domain-containing protein	NA	NA	NA	NA
WP_001551068.1\|2773946_2777471_+	pyruvate:ferredoxin (flavodoxin) oxidoreductase	NA	NA	NA	NA
WP_000837902.1\|2777832_2778966_+	porin OmpN	Q1MVN1	Enterobacteria_phage	4.8e-118	58.8
WP_001295593.1\|2779106_2779541_+	universal stress protein UspF	A0A1W6JNV4	Morganella_phage	1.4e-28	52.8
WP_000555620.1\|2780127_2781042_+	iron/manganese ABC transporter substrate-binding protein SitA	NA	NA	NA	NA
WP_001576746.1\|2781041_2781869_+	iron/manganese ABC transporter ATP-binding protein SitB	M1HV27	Acanthocystis_turfacea_Chlorella_virus	1.5e-07	28.0
WP_001101732.1\|2781865_2782723_+	iron/manganese ABC transporter permease subunit SitC	NA	NA	NA	NA
WP_001595697.1\|2782719_2783577_+	iron/manganese ABC transporter permease subunit SitD	NA	NA	NA	NA
WP_001595695.1\|2784339_2785542_+	Bcr/CflA family efflux MFS transporter	S4TR35	Salmonella_phage	8.0e-188	87.8
WP_001361266.1\|2785875_2786169_-	hypothetical protein	NA	NA	NA	NA
WP_001595694.1\|2786179_2786863_-\|tail	tail fiber domain-containing protein	A0A1X7QGH6	Escherichia_phage	3.4e-58	61.7
WP_001544317.1\|2786875_2787145_-	hypothetical protein	NA	NA	NA	NA
WP_001595693.1\|2787144_2789502_-\|tail	phage tail fiber protein	A0A1X7QGG5	Escherichia_phage	1.7e-117	50.1
WP_001595691.1\|2789566_2790166_-	Ail/Lom family outer membrane beta-barrel protein	Q9EV15	Enterobacteria_phage	1.4e-100	90.5
WP_001595689.1\|2790233_2793713_-	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	89.4
WP_125075731.1\|2793773_2794406_-\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	8.5e-96	98.6
WP_032160272.1\|2794342_2795086_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	4.9e-143	93.1
WP_001595687.1\|2795090_2795789_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	3.4e-130	97.4
WP_000847345.1\|2795788_2796118_-\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	8.1e-58	98.2
WP_064770487.1\|2796114_2798676_-\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	88.8
WP_001595435.1\|2798668_2799103_-\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	1.5e-64	99.2
WP_001552795.1\|2799084_2799507_-\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	4.2e-59	82.9
WP_001595684.1\|2799522_2800263_-\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	8.9e-129	97.6
WP_001595682.1\|2800270_2800666_-\|tail	phage tail protein	A0A2R9YJI2	Escherichia_phage	5.5e-69	98.5
WP_001595680.1\|2800662_2801241_-\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	3.1e-76	96.9
WP_001204540.1\|2801252_2801606_-\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	3.4e-38	65.0
WP_000201530.1\|2801598_2801973_-	hypothetical protein	NA	NA	NA	NA
WP_000522651.1\|2802024_2803053_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	2.7e-115	61.6
WP_001595678.1\|2803110_2803458_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	2.6e-22	58.1
WP_001253910.1\|2803494_2805000_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	1.0e-99	53.5
WP_001595677.1\|2804989_2806582_-\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	1.4e-184	61.1
WP_000259002.1\|2806578_2806785_-\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	7.9e-11	56.9
WP_001595676.1\|2806768_2808697_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	3.9e-261	66.9
WP_001595675.1\|2808668_2809217_-\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	1.0e-57	84.2
WP_001443307.1\|2809603_2809798_+	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	3.3e-27	98.4
WP_024186452.1\|2810157_2810343_-	membrane protein	A0A0P0ZE50	Stx2-converting_phage	3.2e-19	81.4
WP_001595673.1\|2810559_2811093_-	lysozyme	Q08J98	Stx2-converting_phage	4.0e-99	93.2
WP_001595672.1\|2811198_2811468_+	hypothetical protein	NA	NA	NA	NA
WP_001595671.1\|2811436_2811781_-	YdfR family protein	K7PGU6	Enterobacteria_phage	7.0e-36	91.7
WP_000839599.1\|2811785_2812001_-\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	2.0e-33	98.6
WP_000640107.1\|2813284_2813827_-	DUF1133 family protein	A0A0U2S606	Escherichia_phage	5.8e-77	76.3
WP_001595670.1\|2813823_2814114_-	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	1.8e-45	87.5
WP_001595669.1\|2814113_2814713_-	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	1.9e-105	92.0
WP_001326322.1\|2815584_2815923_+	DUF1971 domain-containing protein	NA	NA	NA	NA
WP_001595668.1\|2816535_2817204_-	epoxyqueuosine reductase QueH	NA	NA	NA	NA
WP_000686865.1\|2817474_2817747_+	hypothetical protein	NA	NA	NA	NA
WP_001595666.1\|2817883_2818306_-	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	6.5e-60	88.3
WP_001595665.1\|2818321_2819083_-	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	1.0e-119	89.7
WP_001595663.1\|2819105_2819852_-	ATP-binding protein	V5UQI5	Shigella_phage	3.4e-112	79.3
WP_001595662.1\|2819858_2820716_-	DUF1376 domain-containing protein	A0A0U2RT81	Escherichia_phage	1.5e-74	74.1
WP_000693801.1\|2820728_2821151_-	hypothetical protein	A0A0U2RXZ9	Escherichia_phage	8.2e-71	97.1
WP_001072343.1\|2821147_2821402_-	hypothetical protein	A0A2I6PIE5	Escherichia_phage	1.3e-18	61.6
WP_000233320.1\|2821481_2821901_+	helix-turn-helix domain-containing protein	A0A2I6PIE7	Escherichia_phage	4.2e-19	47.5
WP_001169150.1\|2822336_2822489_+	DUF1391 domain-containing protein	M4QQ57	Salicola_phage	3.5e-08	55.3
WP_000560211.1\|2822899_2823121_+	killing protein KilR	A0A0U2RTC4	Escherichia_phage	4.0e-37	97.3
WP_001516462.1\|2823120_2823291_+	hypothetical protein	A0A0U2SHB5	Escherichia_phage	1.1e-23	91.1
WP_001314664.1\|2823365_2823641_+	hypothetical protein	A0A0U2QW85	Escherichia_phage	1.3e-40	93.4
WP_001595659.1\|2823742_2826343_+	exodeoxyribonuclease VIII	A0A0U2I1R6	Escherichia_phage	1.5e-247	62.8
WP_001595658.1\|2826335_2827145_+	recombination protein RecT	A0A1P8DTF2	Proteus_phage	4.4e-105	71.1
WP_001317028.1\|2827201_2827396_+	type I toxin-antitoxin system endodeoxyribonuclease toxin RalR	A0A0U2QQP4	Escherichia_phage	5.8e-32	96.9
WP_001595656.1\|2827388_2827577_+	DUF1187 family protein	A0A0U2QL97	Escherichia_phage	7.2e-27	98.4
WP_000079604.1\|2827676_2827892_+	excisionase XisR	A0A0U2RY08	Escherichia_phage	1.8e-37	100.0
WP_000040839.1\|2827893_2829129_+\|integrase	site-specific integrase	A0A0U2JGI6	Escherichia_phage	3.8e-241	99.5
WP_001157377.1\|2829180_2830116_+\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	2.8e-148	100.0
WP_001551034.1\|2830244_2831618_-	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	6.6e-53	33.1
WP_000387388.1\|2832095_2833079_-	zinc transporter ZntB	NA	NA	NA	NA
2832014:2832028	attR	NA	NA	NA	NA
WP_001314661.1\|2833333_2834566_+	diguanylate cyclase DgcM	A0A127AWB9	Bacillus_phage	3.1e-17	39.5

DBSCAN-SWA_6

3983317 : 4056368

Ralstonia_phage(11.11%)

tRNA,plate,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024192499.1\|3983317_3984454_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_001077735.1\|3984674_3985052_-	hypothetical protein	NA	NA	NA	NA
WP_001550647.1\|3989627_3991769_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	1.8e-25	24.8
WP_001142958.1\|3991978_3992497_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_000037390.1\|3993193_3993694_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_001521869.1\|3993728_3993953_+	hypothetical protein	NA	NA	NA	NA
WP_001550644.1\|3994003_3995479_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_001521866.1\|3995485_3995899_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_001521865.1\|3995902_3997753_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_000348804.1\|3997716_3998799_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_001550643.1\|3998823_4000104_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_001080149.1\|4000100_4000625_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_000246418.1\|4000627_4001959_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_001521863.1\|4001963_4002725_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_072617203.1\|4002733_4005595_+	AAA domain-containing protein	A0A1C3S747	Escherichia_phage	2.5e-78	29.6
WP_001550641.1\|4005591_4006335_+	type VI secretion system-associated protein TagO	NA	NA	NA	NA
WP_001240537.1\|4006339_4007752_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_122987212.1\|4007860_4011295_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_001563736.1\|4011305_4012658_+	type VI secretion system protein VasL	NA	NA	NA	NA
WP_000002621.1\|4012681_4013164_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_000908071.1\|4013207_4014122_+	hypothetical protein	NA	NA	NA	NA
WP_001086163.1\|4014746_4015532_-	hypothetical protein	NA	NA	NA	NA
WP_001308374.1\|4016070_4016802_-	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	7.6e-40	38.6
WP_000917883.1\|4016866_4017334_+	ribonuclease HI	J9Q745	Salmonella_phage	1.0e-50	58.7
WP_001308373.1\|4017330_4018053_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_001052732.1\|4018086_4018842_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
WP_000644685.1\|4018913_4020272_+	murein transglycosylase D	A0A2H4J9N7	uncultured_Caudovirales_phage	5.8e-09	36.0
WP_001550637.1\|4020318_4021089_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_001230983.1\|4021166_4021967_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_000648583.1\|4022207_4023122_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000997053.1\|4023118_4023922_-	2,5-didehydrogluconate reductase DkgB	A0A1V0SDE7	Indivirus	5.4e-39	36.2
WP_001140178.1\|4029681_4030254_-	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA
WP_000593994.1\|4030440_4031472_+	methionine ABC transporter ATP-binding protein MetN	G9BWD6	Planktothrix_phage	7.2e-36	40.2
WP_001294600.1\|4031464_4032118_+	methionine ABC transporter permease MetI	NA	NA	NA	NA
WP_000874224.1\|4032157_4032973_+	methionine ABC transporter substrate-binding lipoprotein MetQ	NA	NA	NA	NA
WP_001202329.1\|4033090_4033495_+	Rcs stress response system protein RcsF	NA	NA	NA	NA
WP_000094022.1\|4033491_4034199_+\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_001260708.1\|4034309_4036028_+\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_001550629.1\|4036080_4036905_+	YaeF family permuted papain-like enzyme	NA	NA	NA	NA
WP_000239188.1\|4036935_4037646_-	envelope stress response activation lipoprotein NlpE	NA	NA	NA	NA
WP_000635534.1\|4037659_4038082_-\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_001185287.1\|4038078_4038624_-	YaeQ family protein	NA	NA	NA	NA
WP_000417058.1\|4038789_4038990_+	YaeP family protein	NA	NA	NA	NA
WP_000062311.1\|4038976_4039237_+	Rho-binding antiterminator	NA	NA	NA	NA
WP_001550628.1\|4039285_4040584_-\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_000901098.1\|4040648_4041038_-	VOC family protein	NA	NA	NA	NA
WP_001020973.1\|4041094_4043236_-	lysine decarboxylase LdcC	NA	NA	NA	NA
WP_000055748.1\|4043333_4044293_-	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA
WP_001294781.1\|4044305_4047788_-	DNA polymerase III subunit alpha	Q8W6C3	Saccharomonospora_phage	2.2e-209	37.0
WP_001550627.1\|4047824_4048421_-	ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	7.9e-27	40.0
WP_001550626.1\|4048417_4049566_-	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_000565966.1\|4049565_4050354_-	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_000210739.1\|4050357_4050813_-	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_001139287.1\|4050917_4051943_-	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_000758956.1\|4051946_4052432_-	molecular chaperone Skp	NA	NA	NA	NA
WP_001240896.1\|4052553_4054986_-	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_001520521.1\|4055015_4056368_-\|protease	sigma E protease regulator RseP	NA	NA	NA	NA

DBSCAN-SWA_7

4849971 : 4899769

Escherichia_phage(47.62%)

tail,terminase,portal,head,lysis,plate,holin,capsid,integrase,protease

attL 4865869:4865915|attR 4896981:4897027

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000208242.1\|4849971_4850502_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_001293344.1\|4850511_4851843_+	HslU--HslV peptidase ATPase subunit	A0A191ZC11	Erwinia_phage	1.7e-45	29.9
WP_000139496.1\|4851909_4852836_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA
WP_000872908.1\|4852928_4853414_+	ribonuclease E activity regulator RraA	NA	NA	NA	NA
WP_001296623.1\|4853498_4853744_-	septal ring assembly protein ZapB	NA	NA	NA	NA
WP_000084268.1\|4854168_4855014_+	glycerol uptake facilitator protein GlpF	M1HWZ0	Paramecium_bursaria_Chlorella_virus	4.4e-15	28.0
WP_000136788.1\|4855036_4856545_+	glycerol kinase GlpK	NA	NA	NA	NA
WP_001250644.1\|4856679_4857690_+	class II fructose-bisphosphatase	NA	NA	NA	NA
WP_000796330.1\|4857786_4858533_+	ferredoxin--NADP(+) reductase	NA	NA	NA	NA
WP_000323555.1\|4858537_4858966_-	universal stress protein UspD	NA	NA	NA	NA
WP_000655986.1\|4858992_4859292_-	DUF406 domain-containing protein	NA	NA	NA	NA
WP_000155255.1\|4859503_4859944_-	DUF805 domain-containing protein	NA	NA	NA	NA
WP_000802226.1\|4860044_4860644_+	YiiQ family protein	NA	NA	NA	NA
WP_001216325.1\|4860751_4861519_+	triose-phosphate isomerase	NA	NA	NA	NA
WP_000708998.1\|4861573_4862329_-	CDP-diacylglycerol diphosphatase	NA	NA	NA	NA
WP_001045689.1\|4862435_4863425_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000591795.1\|4863744_4864707_-	6-phosphofructokinase	NA	NA	NA	NA
WP_001076742.1\|4864887_4865790_-	CDF family cation-efflux transporter FieF	NA	NA	NA	NA
4865869:4865915	attL	NA	NA	NA	NA
WP_000468308.1\|4866025_4866244_-	prophage transcriptional regulator OgrK	A0A0F7LDQ9	Escherichia_phage	4.7e-38	100.0
WP_064770409.1\|4866325_4867489_-	phage late control D family protein	U5N3V4	Enterobacteria_phage	3.5e-204	99.2
WP_064770410.1\|4867488_4867968_-\|tail	phage tail protein	O64315	Escherichia_phage	3.6e-83	96.9
WP_016235449.1\|4867982_4870430_-\|tail	phage tail tape measure protein	Q7Y4C8	Escherichia_virus	0.0e+00	92.9
WP_000785970.1\|4870422_4870542_-\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	1.0e-15	100.0
WP_001031303.1\|4870574_4870850_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	5.7e-41	100.0
WP_021512565.1\|4870906_4871425_-\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	1.9e-93	99.4
WP_064770411.1\|4871437_4872628_-\|tail	phage tail sheath protein	A0A0F7LBW9	Escherichia_phage	1.8e-224	99.5
WP_016235447.1\|4872904_4873507_-\|tail	tail fiber assembly protein	M1SV83	Escherichia_phage	2.7e-91	85.5
WP_021512563.1\|4873506_4875030_-	hypothetical protein	M1TAS6	Escherichia_phage	1.1e-125	54.4
WP_001285352.1\|4875026_4875638_-\|tail	phage tail protein I	A0A0F7LA36	Escherichia_phage	3.8e-117	99.5
WP_064770412.1\|4875630_4876539_-\|plate	baseplate assembly protein	A0A0F7LCQ9	Escherichia_phage	2.2e-161	99.3
WP_064770413.1\|4876543_4876891_-\|plate	baseplate assembly protein	A0A0F7L9X3	Escherichia_phage	5.5e-57	98.3
WP_021512561.1\|4876887_4877523_-\|plate	phage baseplate assembly protein V	U5N3F0	Enterobacteria_phage	5.5e-111	98.1
WP_001001767.1\|4877589_4878042_-	phage virion morphogenesis protein	A0A0F7LBV9	Escherichia_phage	2.4e-76	99.3
WP_000917186.1\|4878034_4878502_-\|tail	phage tail protein	Q7Y4E0	Escherichia_virus	2.5e-81	98.7
WP_001440152.1\|4878464_4878638_-	hypothetical protein	Q7Y4E1	Escherichia_virus	2.3e-24	96.5
WP_064770414.1\|4878609_4879035_-\|lysis	LysB family phage lysis regulatory protein	Q858W0	Yersinia_virus	1.2e-64	95.7
WP_064770415.1\|4879022_4879448_-	hypothetical protein	M1SV74	Escherichia_phage	3.6e-58	97.2
WP_001144101.1\|4879462_4879960_-	glycoside hydrolase family 104 protein	A0A0F7LBS0	Escherichia_phage	3.1e-93	100.0
WP_000123124.1\|4879959_4880241_-\|holin	holin	A0A0F7LDF8	Escherichia_phage	3.7e-43	100.0
WP_000846399.1\|4880244_4880448_-\|tail	tail protein X	U5N3E7	Enterobacteria_phage	4.0e-31	100.0
WP_000988633.1\|4880447_4880957_-\|head	head completion/stabilization protein	U5N0S3	Enterobacteria_phage	1.1e-90	100.0
WP_064770417.1\|4881056_4881794_-\|terminase	terminase endonuclease subunit	Q94MJ2	Enterobacteria_phage	2.8e-127	97.6
WP_064770418.1\|4881797_4882871_-\|capsid	phage major capsid protein, P2 family	Q94MH9	Enterobacteria_phage	5.7e-201	98.9
WP_001085946.1\|4882929_4883784_-\|capsid	GPO family capsid scaffolding protein	Q778Z1	Enterobacteria_phage	7.6e-132	97.2
WP_021512555.1\|4883957_4885730_+\|terminase	terminase ATPase subunit family protein	A0A0F7LCK3	Escherichia_phage	0.0e+00	99.7
WP_021512554.1\|4885729_4886764_+\|portal	phage portal protein	M1SV64	Escherichia_phage	1.8e-199	99.1
WP_001123601.1\|4887159_4888143_+	DNA (cytosine-5-)-methyltransferase	Q7Y4B5	Escherichia_virus	3.4e-120	63.3
WP_001469928.1\|4888150_4889107_-	hypothetical protein	NA	NA	NA	NA
WP_000742296.1\|4889109_4890285_-	hypothetical protein	NA	NA	NA	NA
WP_021512553.1\|4890481_4892776_-	replication endonuclease	M1SV59	Escherichia_phage	0.0e+00	97.2
WP_000027667.1\|4892765_4893041_-	hypothetical protein	Q858T5	Yersinia_virus	3.8e-45	100.0
WP_001113263.1\|4893037_4893262_-	TraR/DksA family transcriptional regulator	A0A0F7LDG9	Escherichia_phage	2.2e-35	100.0
WP_001277958.1\|4893261_4893564_-	hypothetical protein	U5N0U2	Enterobacteria_phage	5.0e-46	98.0
WP_000557701.1\|4893563_4893788_-	DUF2732 family protein	S4TP68	Salmonella_phage	3.0e-32	98.6
WP_000217667.1\|4893851_4894352_-	hypothetical protein	M1SV55	Escherichia_phage	1.0e-91	99.4
WP_001284599.1\|4894816_4895005_-	hypothetical protein	NA	NA	NA	NA
WP_001430611.1\|4895059_4895332_-	hypothetical protein	Q1JS36	Enterobacteria_phage	3.1e-39	80.0
WP_000703053.1\|4895478_4895772_+	helix-turn-helix transcriptional regulator	Q1JS21	Enterobacteria_phage	4.0e-32	64.9
WP_000027751.1\|4895884_4896865_+\|integrase	tyrosine-type recombinase/integrase	S4TP66	Salmonella_phage	4.1e-182	96.9
WP_001223800.1\|4897050_4897551_-	cell-envelope stress modulator CpxP	NA	NA	NA	NA
4896981:4897027	attR	NA	NA	NA	NA
WP_001033722.1\|4897700_4898399_+	envelope stress response regulator transcription factor CpxR	Q6XM27	Feldmannia_irregularis_virus	5.3e-06	30.3
WP_000580422.1\|4898395_4899769_+	envelope stress sensor histidine kinase CpxA	W8CYF6	Bacillus_phage	3.8e-16	25.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP023353

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection