CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP011011	Pseudoalteromonas agarivorans DSM 14585 chromosome I, complete sequence	2 crisprs	DEDDh,cas3,csx1,DinG,csa3	0	0	2	0
NZ_CP011012	Pseudoalteromonas agarivorans DSM 14585 chromosome II, complete sequence	0 crisprs	csa3,cas3,DinG	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP011011_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011011_1

453514-453635

Orphan

Consensus_repeat	Method
GTCGCGTTTTTAAATGAATGATCACGTAATCATAATCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011011_1

>merge|NZ_CP011011|1|453514-453635|CRISPRCasFinder
GTCGCGTTTTTAAATGAATGATCACGTAATCATAATCGCCGGGTAAACCGGCTGCTACATTTACACCGTAGCAGCGACTTTACGTCGCGTTTTTAAATGAATGACCACGTAATCATAATCGC

>NZ_CP011011|1|1|453514-453635|CRISPRCasFinder
GTCGCGTTTTTAAATGAATGATCACGTAATCATAATCGC	CGGGTAAACCGGCTGCTACATTTACACCGTAGCAGCGACTTTAC
GTCGCGTTTTTAAATGAATGACCACGTAATCATAATCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011011.1\|WP_004585770.1\|446741_447233_+\|Fe-S-cluster-assembly-transcriptional-regulator-IscR	unknown	unknown	gnl\|CDD\|236777
NZ_CP011011.1\|WP_096041098.1\|466571_468233_+\|type-II/IV-secretion-system-protein	unknown	unknown	gnl\|CDD\|225363
NZ_CP011011.1\|WP_096041090.1\|444937_445693_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|377360
NZ_CP011011.1\|WP_055016685.1\|466180_466585_+\|type-II-secretion-system-major-pseudopilin-GspG	unknown	unknown	gnl\|CDD\|130771
NZ_CP011011.1\|WP_096041093.1\|457094_457877_+\|DUF481-domain-containing-protein	unknown	unknown	gnl\|CDD\|377313
NZ_CP011011.1\|WP_004585773.1\|448911_449235_+\|iron-sulfur-cluster-assembly-protein-IscA	unknown	unknown	gnl\|CDD\|213674
NZ_CP011011.1\|WP_055016687.1\|468229_469420_+\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|224376
NZ_CP011011.1\|WP_004585774.1\|449331_449859_+\|co-chaperone-HscB	unknown	unknown	gnl\|CDD\|179914
NZ_CP011011.1\|WP_004585771.1\|447258_448476_+\|IscS-subfamily-cysteine-desulfurase	unknown	unknown	gnl\|CDD\|184450
NZ_CP011011.1\|WP_024032480.1\|445792_446521_+\|tRNA-(cytosine(32)/uridine(32)-2'-O)-methyltransferase-TrmJ	unknown	unknown	gnl\|CDD\|185069
NZ_CP011011.1\|WP_167381739.1\|457931_459866_-\|acyltransferase-family-protein	unknown	unknown	gnl\|CDD\|224748
NZ_CP011011.1\|WP_055254532.1\|449900_451763_+\|Fe-S-protein-assembly-chaperone-HscA	unknown	unknown	gnl\|CDD\|235360
NZ_CP011011.1\|WP_055016684.1\|465366_466083_+\|DsbA-family-protein	unknown	unknown	gnl\|CDD\|372611
NZ_CP011011.1\|WP_096041092.1\|453817_455245_+\|NAD-dependent-succinate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143421
NZ_CP011011.1\|WP_096041091.1\|452220_453455_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP011011.1\|WP_004585772.1\|448518_448902_+\|Fe-S-cluster-assembly-scaffold-IscU	unknown	unknown	gnl\|CDD\|183087
NZ_CP011011.1\|WP_096041096.1\|463485_465291_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011011.1\|WP_096041095.1\|460474_463192_+\|SLBB-domain-containing-protein	unknown	unknown	gnl\|CDD\|224512
NZ_CP011011.1\|WP_004585776.1\|451773_452112_+\|ISC-system-2Fe-2S-type-ferredoxin	unknown	unknown	gnl\|CDD\|131062
NZ_CP011011.1\|WP_024032471.1\|456085_456904_+\|mechanosensitive-ion-channel	unknown	unknown	gnl\|CDD\|182386

Protein	Function_ID	Function_description	E-value
NZ_CP011011.1\|WP_004585770.1\|446741_447233_+\|Fe-S-cluster-assembly-transcriptional-regulator-IscR	gnl\|CDD\|236777	PRK10857, PRK10857, Fe-S cluster assembly transcriptional regulator IscR.	1.14316e-81
NZ_CP011011.1\|WP_096041098.1\|466571_468233_+\|type-II/IV-secretion-system-protein	gnl\|CDD\|225363	COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion].	4.99222e-174
NZ_CP011011.1\|WP_096041090.1\|444937_445693_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|377360	pfam04445, SAM_MT, Putative SAM-dependent methyltransferase. This is a family of putative SAM-dependent methyltransferases.	1.63666e-146
NZ_CP011011.1\|WP_055016685.1\|466180_466585_+\|type-II-secretion-system-major-pseudopilin-GspG	gnl\|CDD\|130771	TIGR01710, Type_II_secretion_system_protein_G, type II secretion system protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	2.26063e-38
NZ_CP011011.1\|WP_096041093.1\|457094_457877_+\|DUF481-domain-containing-protein	gnl\|CDD\|377313	pfam04338, DUF481, Protein of unknown function, DUF481. This family includes several proteins of uncharacterized function.	3.01632e-59
NZ_CP011011.1\|WP_004585773.1\|448911_449235_+\|iron-sulfur-cluster-assembly-protein-IscA	gnl\|CDD\|213674	TIGR02011, Protein_yfhF., iron-sulfur cluster assembly protein IscA. This model represents the IscA component of the ISC system for iron-sulfur cluster assembly. The ISC system consists of IscRASU, HscAB and an Isc-specific ferredoxin. IscA previously was believed to act as a scaffold and now is seen as an iron donor protein. This clade is limited to the proteobacteria. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	1.03417e-57
NZ_CP011011.1\|WP_055016687.1\|468229_469420_+\|type-II-secretion-system-F-family-protein	gnl\|CDD\|224376	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion].	2.60937e-88
NZ_CP011011.1\|WP_004585774.1\|449331_449859_+\|co-chaperone-HscB	gnl\|CDD\|179914	PRK05014, hscB, co-chaperone HscB; Provisional.	1.0981e-82
NZ_CP011011.1\|WP_004585771.1\|447258_448476_+\|IscS-subfamily-cysteine-desulfurase	gnl\|CDD\|184450	PRK14012, PRK14012, IscS subfamily cysteine desulfurase.	0
NZ_CP011011.1\|WP_024032480.1\|445792_446521_+\|tRNA-(cytosine(32)/uridine(32)-2'-O)-methyltransferase-TrmJ	gnl\|CDD\|185069	PRK15114, PRK15114, tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; Provisional.	8.93379e-137
NZ_CP011011.1\|WP_167381739.1\|457931_459866_-\|acyltransferase-family-protein	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	9.99705e-61
NZ_CP011011.1\|WP_055254532.1\|449900_451763_+\|Fe-S-protein-assembly-chaperone-HscA	gnl\|CDD\|235360	PRK05183, hscA, chaperone protein HscA; Provisional.	0
NZ_CP011011.1\|WP_055016684.1\|465366_466083_+\|DsbA-family-protein	gnl\|CDD\|372611	pfam13462, Thioredoxin_4, Thioredoxin.	1.57548e-33
NZ_CP011011.1\|WP_096041092.1\|453817_455245_+\|NAD-dependent-succinate-semialdehyde-dehydrogenase	gnl\|CDD\|143421	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like. Succinate-semialdehyde dehydrogenase, mitochondrial (SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent oxidation of succinate semialdehyde (SSA) to succinate. This group includes the human aldehyde dehydrogenase family 5 member A1 (ALDH5A1) which is a mitochondrial homotetramer that converts SSA to succinate in the last step of 4-aminobutyric acid (GABA) catabolism. This CD also includes the Arabidopsis SSADH gene product ALDH5F1. Mutations in this gene result in the accumulation of H2O2, suggesting a role in plant defense against the environmental stress of elevated reactive oxygen species.	0
NZ_CP011011.1\|WP_096041091.1\|452220_453455_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.24166e-35
NZ_CP011011.1\|WP_004585772.1\|448518_448902_+\|Fe-S-cluster-assembly-scaffold-IscU	gnl\|CDD\|183087	PRK11325, PRK11325, scaffold protein; Provisional.	4.15721e-94
NZ_CP011011.1\|WP_096041095.1\|460474_463192_+\|SLBB-domain-containing-protein	gnl\|CDD\|224512	COG1596, Wza, Periplasmic protein involved in polysaccharide export, contains SLBB domain of b-grasp fold [Cell wall/membrane/envelope biogenesis].	3.65261e-26
NZ_CP011011.1\|WP_004585776.1\|451773_452112_+\|ISC-system-2Fe-2S-type-ferredoxin	gnl\|CDD\|131062	TIGR02007, 2Fe-2S_ferredoxin, ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	4.42378e-59
NZ_CP011011.1\|WP_024032471.1\|456085_456904_+\|mechanosensitive-ion-channel	gnl\|CDD\|182386	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS.	7.26198e-89

>NZ_CP011011.1|WP_096041091.1|452220_453455_+|IS3-family-transposase
MKTTKIKDVKRTQRDYTLGFKLSIVEQVEKGDFTYKQAQSHYGIQGRSTVLVWLRKHGKLDWSKPTYIANMPKSKETPAQKIKRLEREIEELRLKDLIKDEMINIMDEEYGAGLRKKLHIRAITRAKENHQIKLTPLCRAYGVTRQGYYQAMRRIDARNKELEPVKELVMYWRQFMPRIGGKKLYLMIKPDLQERGIKLGRDCFFDYLREHDFLVKPKKNYTKTTNSNHWMRKHPNLLKEYMPTAAEEVFVSDITYVKSAQGVHYLSLVTDAYSRKIMGYELSDEMKATDVVRALEMTIKQRVYKRDAIHHSDRGLQYCSEVYQNALLKEGIRPSMTDGYDCYQNALAERINGILKQEFLLYKCRNMAELKQLVEESIFIYNEMRPHLSLDMKTPNQVHKKDLALSHQVFH
>NZ_CP011011.1|WP_004585776.1|451773_452112_+|ISC-system-2Fe-2S-type-ferredoxin
MPQIIFLPHPELCPDGAALEAPAGETVLDVALKNGISIPHACEKSCACTTCHLVIREGFDSLDESDELEDDMLDKAWGLESESRLGCQAVIRDEDLVVEIPKYNLNIVNEEH
>NZ_CP011011.1|WP_055254532.1|449900_451763_+|Fe-S-protein-assembly-chaperone-HscA
MALLQIAEPGQSAAPHEHKLAIGIDLGTTNSLVATVQSGEARTLTDDLGAAMLPSVVRYQAGGITVGTDAAQAATQDPANTLISVKRFLGKTQAEIEQSYGQLPYQFCEDNGSLAIQTDAGKISPVKASSHILAALKARAEQSFGNQDILGAVITVPAYFDDAQRQSTKDAAELAGINVLRLLNEPTAAAVAYGLDSGQEGIIAVYDLGGGTFDISILRLHQGVFEVMATGGDSSLGGDDFDSLLVDYFKQQTGISALSPSVLRLFINKAKACKEALSQYAKVNVVLEFDEQKHTVEVTRETFDELAMPLVKKTLRSCRRAVKDAGIENEEVLQVVMVGGSTRMPLVRSQVEGFFEKEPLTSIDPDRVVALGAALQADVLVGNKPDSDMLLLDVLPLSLGLETMGGLVEKIIPRNTTIPVARAQEFTTFKDGQTAMSLHVLQGERELVDDCRSLAKFSLKGIPAMAAGAAHIRVTFKVDADGLLSVSAMEKSTGVQAEIQVKPSFGLSDDQVANMLKESMSNAKDDMQARMLKEQQVEALRVIEALEASLASDGDLLDDIQLANLKAEISELAKVRETAQQPGEIKAAIEKVDNASSDFASRRMDASIKKALTGQSVDNV
>NZ_CP011011.1|WP_004585774.1|449331_449859_+|co-chaperone-HscB
MRYFELFAIPVDYNIDLATINKHYLELQRAVHPDRHANASSRDKLMAVQSTAEINDALQTLKHPVKRAEYMLSELGVDIRAEQQTLQDPMFLMQQMELREELEELASASNPEAAIANFESQIKQLKIQYSNELAEQLASNDEAQYQQAADNIRKLKFVYKLEDELERIEDSLFDD
>NZ_CP011011.1|WP_004585773.1|448911_449235_+|iron-sulfur-cluster-assembly-protein-IscA
MAVTLTDAAANRVQSFLANRGKGLGLRVGIKTTGCSGLAYVLEFVDELNEDDETFKAKGVTLIVDAKSLVYIDGTELDYTKEGLNEGFKFNNPNQADECGCGESFTV
>NZ_CP011011.1|WP_004585772.1|448518_448902_+|Fe-S-cluster-assembly-scaffold-IscU
MAYSDKVIDHVENPRNVGVLDKNDPSVATGMVGAPACGDVMKLQIKVSSEGVIEDAKFKTYGCGSAIASSSLVTEWVKGKTLDEASTIKNTDISAELELPPVKIHCSILAEDAIQAAIADYKSKQAK
>NZ_CP011011.1|WP_004585771.1|447258_448476_+|IscS-subfamily-cysteine-desulfurase
MKLPIYLDYAATTPVDERVAKEMMQCLTMDGNFGNPASRSHRFGWQAEEVVDQARTDIADLINADPREIVFTSGATESNNLAIKGAAQFYKKKGKHVITAKTEHKAVIDTCRELERQGFEVTYMDVEENGLLDLKKLEETMRDDTILVSIMHVNNELGVIQDINTIGEMCRERKIMFHVDAAQSAGKVLIDVQQLKVDFMSFSGHKVYGPKGVGALYVRRKPRARLEAQMHGGGHERGMRSGTLATHQLVGMGAAFRIAKQDFEKDHAHISALRKRLIDGIMADMDEVYFNGAQDQSVPGIVNISFNFVEGESLLMAVKDIAVSSGSACTSASLEPSYVLRALGRNDELAHSSIRFSIGRFTTEEEIDYTVELMKNSIGRLREMSPLWEMHQEGVDLDSVEWAHH
>NZ_CP011011.1|WP_004585770.1|446741_447233_+|Fe-S-cluster-assembly-transcriptional-regulator-IscR
MKLTSKGRYAVTAMLDVALHASVGPVALADISQRQEISLSYLEQLFARLRKNGLVSSVRGPGGGYLLGREAAVISVGDVISAVDESVDATRCQGADTGCQSGMRCLTHNLWSDLSARIEEFLNNITLAELVEKSDVKEIASRQDNSINNAIKQLENIQVSCQL
>NZ_CP011011.1|WP_024032480.1|445792_446521_+|tRNA-(cytosine(32)/uridine(32)-2'-O)-methyltransferase-TrmJ
MILDDIRIVLVNTSHSGNIGSAARAMKTMGLSKLYLVDPACEVDSHASALAAGATDVLGNAVIVDTVADAIADCALTIGTSARSRTLSWPMVEPRECGEKLVAEAVNGPVALVFGRENSGLTNEELQLCNYHVCIPANPQYSSLNLAMAVQTLSYETRMAFLNQQPKAEQADDETAYPSSKQTELFYDHLEETLDNTGFIIKQHPGLVMTKLRRLFNRARPEEAELNILRGILTSINKSIPK
>NZ_CP011011.1|WP_096041090.1|444937_445693_+|class-I-SAM-dependent-methyltransferase
MVIQCAFKECRPYLNELETRFNLAQWAQSCSGFTLHYDDKGLSLLKSDEPKLGAINVDFVTGAVAHRRKFGGGKGQSIAKAVGLNKGATPVVLDATAGLGRDGFVLASLGCKVILHERHPVVAALLFDGLKRAYEDAEIGSWMQQNMSLVFGSSHTLLEQCESMPDVVYLDPMFPHREKSALVKKEMRVFQALVGADTDADDLLEFAYPLASKRVVVKRPDYAPFLNNQTPSMQIKTKKNRFDVYVKAAMI
>NZ_CP011011.1|WP_096041092.1|453817_455245_+|NAD-dependent-succinate-semialdehyde-dehydrogenase
MSNLIFCDSFINGEFYKTNKRFSVDDPATEKSIVEVSDIDEQGVNNAINAAQGAFVKLKSTNATERSNTLMRWYELVIKHKQTLAELMTKEQGKPLKESLGEIDYGAGFIKWFAEEAKRSYGDVIPPTDDKHRLTSFKQPVGVVAGITPWNFPVAMVTRKVAPAYAAGCSFVLKPSEYTPLCALALAYLADQAGFVKGAFNVLISQDAKTVGQILTDSEVVRKFTFTGSTGVGKQLLSQCAGTIKRTSMELGGNAPFIIFDNADIDEAIEGLMAAKFRNSGQACVAANRIFIQRSILDEVLSKITPKVAALKVANGFEEDVDIGPLIYPKAKEKVQQLVQDALDKGADLIGDNSDLGGSFQNPLIVNNVTTEMDIYHEEVFGPVLTVIPFDEESEVLALANDVPYGLAAYFYSQNIKQIYRISEGLEFGMVGVNEGVISNPVAPFGGVKQSGLGREGGHQGLDEYLEEKYVCIKV
>NZ_CP011011.1|WP_024032471.1|456085_456904_+|mechanosensitive-ion-channel
MDSILTWLNENSGLILHYGIQAVIALVIFLLGSRIAKFCAGLTEKTFDKKKVDKAVGSFVSSIVYAIVFAATILMALSQIGIETTSFIAILGAAGLAVGLALQGSLSNFASGVLIILLRPFKSGEFVEAGGKMGTVKKIEIFSTELRTPDNKVIIVPNSQIMSGAITNFSRESTRRIDLVIGVGYDADLRKTKEVLQSVLDAETRLLKDPAYTVAVSELADSSVNFIVRPWVNSGDYWPTYWALLENIKIALDDADITIPFPQMDVHLHKQD
>NZ_CP011011.1|WP_096041093.1|457094_457877_+|DUF481-domain-containing-protein
MKLKLLTLLVAASAATNAFAEDAEKKTWEVTSELGAIVTSGNTETTTLKGGLKVLHHLENWNNEYKIDGIYKEDEVEDDNGDKDKQRTNEKYSASAQGNYKLNEKNSHLFIYGSHVSDYFGAYRTESVISAGYGLRLIDQPDMWLNAEFGPGYKFFEYSDDSTQVDDDGNLLAGESDSEVIALGKLDYNWKISDSARFTQLVSVEYGDSNTKTRSETALLAKINGSLQMKVAFNVTNNSDVADDEESTDTETSLTLVYSF
>NZ_CP011011.1|WP_167381739.1|457931_459866_-|acyltransferase-family-protein
MQHIYYGHFFLFMQFRKDINGLRAFAVIAVVLFHFNPATLPGGFAGVDVFFVISGYLMTGIIFKKLDANNFSLFSFYIARARRIIPALATLCLALLLYGWLYLIPSEFQLLSKHTSVSMGFISNLAYWRESGYFDAISHEKWLLHTWSLSVEWQFYIIYPALLLLLKRKFTLSAIKKFILCSTIVGFLYCIYASYTTPNLAYYFLSSRAWEMMIGGLAYLYPFKFNSTVRKTSHLIGIALILASYILIDETNYWPGFLALIPCLGAYLIIIARDNYSFLTGNYIFQKIGTWSYSIYLWHWPLVIFYYERSGGHSSPIVYIFLSVFFGVLSYRYIESINFRQPSNLSITNIIKFKPVLITLFIALLSVAIYSTTGADLKARSAAQSDTALYLKRYQKASYVSSFVKQAYRSECNYYDGSLAKVNIANTCTNGGSGGIFVWGDSHAQALGYGLRKTLNRVNFNQVATSGCRPLVKEDSVSKGEFKKACDRSNKKAAEAILKIHPKVIVLAQKLDHHKNDFFEIVAFLERNNINAQIILAGPVPQWRPSLPKAIVKRHFDVQEKYIDDIYFVKETTQVNTILKKRYNNSSIQYVSIIDTLCSSGHKCLAKVDDNNTPLVWDYGHLTLEGSIYIAENVFKPVLNKALQ
>NZ_CP011011.1|WP_096041095.1|460474_463192_+|SLBB-domain-containing-protein
MIAEIFGRRLGIYTLVKALKYYVSFLFLVFSVNLLAFTPTAAQLEQFKNLPRAQQEALAKQYGVDISAITGDGQASKASNSSQPISIGERFDEKEKTLTDEERFKPKVEELKPFGYELFAGEPTTFMPSENASIPDSYTIGTGDELKISFYGKESNSFDVTVDREGRISIPNLSPVEVAGLTFAEVKELIKLKVDQEVIGVKAFVSLGQLRSMRILVLGEAYKPGSYSVSSLTTVSHALFVSGGVSDIASLRNIQVKRSGQVITNFDLYDLLIKGDSSNDIVLKPGDVVFVPPVGKQVTVEGLVKRPAIFELKAGETAKQLLAMAGGLKPGAYAKNAVVERFNAERKEILSIDFTKSQVNYTPQDGDRLRFNSISEQYLNSISLIGAVARPGSYEWQPGKRISDVLKSVRGDLLPQADLSYGLVIREININGDIEIHQFDVAQAIVKNKKNDLKLQANDKVIIFSRFEEKEVEQVALANMALSEKQRIQQLKTQQWQKFQQKEFEKYIGINEKEQELITDNDQILTIAEYTERKKEEEQSLKPEDYATFSRFNLLEPIIAKLRKQASFSQNMQLVEISGHVTYPGIYPLSVGGKVSDLIAAAGGLLESAYVKQAEITRIAGSDISEVEHIQFDLQSVVSGDNRDNVTLKSKDSLNIFPIPNWQENVKVELKGEVKFPGEYTIRRGETLNDLLKRAGGFSQFAEQSAAVFTRKSIKKQEQEQLARLSTELRRDIASKSFQSSITSNSLSYDEMNNLLDDLANVKAVGRLVINLPLIVQNKQKLVLQDGDMLFVPSKRDSISVIGEVNYSTSHLYERGVSIEDYINKSGGLKSRAADDRIYIIKANGSVKVPNKSSWFAANEATMLEPGDTIVVPLNAEHMDKLTLWSKATQVLYQLGVAVAALSAL
>NZ_CP011011.1|WP_096041096.1|463485_465291_+|hypothetical-protein
MKRFTKLALIPAAVTAVLAGNAYAGTEACFEIYKTNVDGEISAFGTTYEEASCVANRGGASNDDLAVINETKIAYELTGNLPIDFEDLKGDGATSTDDSQQIVYIPTTDIPGGTKLKFRITGAVFDGNSNQIHLVKYNTDDAEIEAVASSDGQVDGESEITFITKAGITIGAGTRLAFSRVSTGADVTFAGSAVDPVGIKIANDECTTANISKSVSLKAVEAVTDGGNGYSILGAISADEKIADISAQFYAFQDATTAEGDVNAESTNSMGAAITARTEFVFDPDASKQLVSRKNQVLYKSAFYNRGPVLDRSIDLVSSDRLDTKFVSSAAPGATVKMGIFNSRLAATGVVDEQEPVDIGITWGSFGLTKDTAPEYETYAEDVFDANELNGDVESNPVATSSKLYNAEYNEVYYAVTNLNTTNGVMNFNYAVDTNYTLDFGNTNYIDHCDMSVRSHEIGVNGAVLKVPYAVNGEGNFVRVTNEHDEAAEVTVDVFGESDDGTTNNRKVTAVKLGTVAAQSSVVYFVPDLIEEAVEQAGYTGADGGYSAGDLGVNANSNANRHTLTFTVTAPRDTVHGVSVQRTLGGSDRVMPVLDRNEWSQ
>NZ_CP011011.1|WP_055016684.1|465366_466083_+|DsbA-family-protein
MKKLLLLCFVVILSGCQSTQNNENEELKKELAQLKKVQRQVAIKVGLGELVRPEKIELSSEAIWIGSKDAEVVMIEFTDLHCPYCKKFQQTVWPELKAKYVDTNKLAVSAREFPLASLHPKAPYAAVTLRCANEQDQYENVKERLFELGQSVVKGSLDEIVKDFNLDQEQFDACLANTDVHNIVTRSLQDAAELGLSSTPTFIIGKKEGDYITNYQILTGAGSLEKFGSVIDEVTKSK
>NZ_CP011011.1|WP_055016685.1|466180_466585_+|type-II-secretion-system-major-pseudopilin-GspG
MKYKFKSSGFTLVELLIVMVILGLLASIVAPRMFSKVDSAREGTAKAQMQVIATALDSYRLDIGYYPDTLNELLQSTKRQWDGPYFPQKIPLDPWGNEYSYSASSEANSDMFVLKSFGRDGKLGGEGEDADVEY
>NZ_CP011011.1|WP_096041098.1|466571_468233_+|type-II/IV-secretion-system-protein
MWNTKIKEYVTAHNLIDANRLSQALEYQNATSEKLDVLLLNSGWIDEDQLSIMYADLLKCGRWTQPLQLEQADIKALEAVNTDFLLSAQLLPLEINNKTLKLGFASPHNMEGLDYLRFLDFEIDFFALSKKDFELLSEQFKALFQQQPDLIVSSDNVAALKELALGAPTVNLVNSLINKGVKLGASDLHIEPVDGRYRARYRIDGILKEADPIPHSLQLAVISRIKILSGMDIAEKRRPQDGKIEMKAGSTDLDIRCSTLPLGMGESVVMRFLIKNAVKFDLGTLGYSEDLIDYINQDLKRTSGVILMTGPTGSGKTTSLYSFLNQINKPDIKIITLEDPIEYQLAGVNQVQVNSDIGFDFSAGLRSIVRQDPDVIMVGEIRDNETAKIALQSALTGHLVFSTVHTNDAPSAYTRLMDLGIEEYLLNAGLVSIMAQRLARTLCNHCKKPLEQDESQDLIAKYTLNKLAPLKNIRLHQAVGCDHCEHTGYTGRVAFLEYLPCDSDIKKIPKDEKLLDQLYQLMEDKNLRSLKQDGLLKAIQGITTVEEVMRVAG
>NZ_CP011011.1|WP_055016687.1|468229_469420_+|type-II-secretion-system-F-family-protein
MSQLYKYKAYSHSGETVNGEISAENEKEAFSKLKQDYKLVIKVNATYQARQRKRITLADLEQSTNQLATLLKNGLKIDKALSVLVKSNQKSAIGLVWSSVLSDIKQGALLSDALAKRPEAFSTLFVEMVRIGESTGNLPQVFNRLSQNLLFQNALRNKVVQAITYPFFILIVCITAIWAIFNFVIPSMSSMFDSVDDVPTYTQVLIDASQWIQNYQLHLLVCILAVISGLIFAFQNHEFKIKMIQATVNLPLIRTIIKQSDRIRFATSLQLTLESGVSLSSGLQLASETVINPKLKKSLRNIVVSVSAGGVLSDELAKLTLFDDIGISLISVGEESGTLTSSFTEIAQRSRLSFEQWLIKFTAMLEPLLILVMGGVVGSVVITMLLSIVSINDVSF

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Crispr_ID: NZ_CP011011_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011011_2

2978255-2978364

Orphan

Consensus_repeat	Method
ACTAAAATAAATGGTGCCGACTAACCGAGTCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011011_2

>merge|NZ_CP011011|2|2978255-2978364|CRISPRCasFinder
ACTAAAATAAATGGTGCCGACTAACCGAGTCGACGGGTAACTTAAACAGACTCTGATTACAGTGCTCTTTTCAAATTACTAAAATAAATGGTGCCGACTAACCGAGTCGA

>NZ_CP011011|2|2|2978255-2978364|CRISPRCasFinder
ACTAAAATAAATGGTGCCGACTAACCGAGTCGA	CGGGTAACTTAAACAGACTCTGATTACAGTGCTCTTTTCAAATT
ACTAAAATAAATGGTGCCGACTAACCGAGTCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011011.1\|WP_004589599.1\|2969997_2970552_-\|UPF0149-family-protein	unknown	unknown	gnl\|CDD\|234976
NZ_CP011011.1\|WP_096042227.1\|2964794_2965994_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225375
NZ_CP011011.1\|WP_096042233.1\|2983836_2984898_-\|A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|182805
NZ_CP011011.1\|WP_096042230.1\|2974150_2975467_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP011011.1\|WP_004587530.1\|2989104_2989821_+\|two-component-system-response-regulator-ArcA	unknown	unknown	gnl\|CDD\|183013
NZ_CP011011.1\|WP_167381750.1\|2977094_2977727_-\|antibiotic-biosynthesis-monooxygenase	unknown	unknown	gnl\|CDD\|224278
NZ_CP011011.1\|WP_004587535.1\|2983530_2983803_-\|oxidative-damage-protection-protein	unknown	unknown	gnl\|CDD\|180059
NZ_CP011011.1\|WP_096042236.1\|2987009_2988614_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP011011.1\|WP_096041474.1\|2980263_2981301_+\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376773
NZ_CP011011.1\|WP_096042231.1\|2975456_2976872_-\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NZ_CP011011.1\|WP_004588455.1\|2964012_2964354_-\|30S-ribosomal-protein-S6	unknown	unknown	gnl\|CDD\|179034
NZ_CP011011.1\|WP_004589600.1\|2968649_2969972_-\|Xaa-Pro-aminopeptidase	unknown	unknown	gnl\|CDD\|182804
NZ_CP011011.1\|WP_096042228.1\|2966283_2967450_-\|FAD-dependent-monooxygenase	unknown	unknown	gnl\|CDD\|236139
NZ_CP011011.1\|WP_096042229.1\|2967446_2968634_-\|2-octaprenyl-6-methoxyphenyl-hydroxylase	unknown	unknown	gnl\|CDD\|235584
NZ_CP011011.1\|WP_055254809.1\|2992380_2993301_+\|GTP-cyclohydrolase-I-FolE2	unknown	unknown	gnl\|CDD\|237466
NZ_CP011011.1\|WP_024031608.1\|2993415_2994012_+\|DUF2726-domain-containing-protein	unknown	unknown	gnl\|CDD\|371282
NZ_CP011011.1\|WP_096042237.1\|2989835_2992154_-\|aerobic-respiration-two-component-sensor-histidine-kinase-ArcB	unknown	unknown	gnl\|CDD\|236842
NZ_CP011011.1\|WP_054983838.1\|2971070_2974154_-\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NZ_CP011011.1\|WP_096042234.1\|2985059_2985785_+\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	unknown	unknown	gnl\|CDD\|234649
NZ_CP011011.1\|WP_096042235.1\|2985829_2986855_+\|methyltransferase	unknown	unknown	gnl\|CDD\|181902

Protein	Function_ID	Function_description	E-value
NZ_CP011011.1\|WP_004589599.1\|2969997_2970552_-\|UPF0149-family-protein	gnl\|CDD\|234976	PRK01736, PRK01736, hypothetical protein; Reviewed.	1.78932e-46
NZ_CP011011.1\|WP_096042227.1\|2964794_2965994_+\|alpha/beta-hydrolase	gnl\|CDD\|225375	COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily [General function prediction only].	2.83692e-26
NZ_CP011011.1\|WP_096042233.1\|2983836_2984898_-\|A/G-specific-adenine-glycosylase	gnl\|CDD\|182805	PRK10880, PRK10880, adenine DNA glycosylase.	5.12926e-179
NZ_CP011011.1\|WP_096042230.1\|2974150_2975467_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	4.57353e-41
NZ_CP011011.1\|WP_004587530.1\|2989104_2989821_+\|two-component-system-response-regulator-ArcA	gnl\|CDD\|183013	PRK11173, PRK11173, two-component response regulator; Provisional.	3.30853e-151
NZ_CP011011.1\|WP_167381750.1\|2977094_2977727_-\|antibiotic-biosynthesis-monooxygenase	gnl\|CDD\|224278	COG1359, COG1359, Uncharacterized conserved protein [Function unknown].	1.54053e-13
NZ_CP011011.1\|WP_004587535.1\|2983530_2983803_-\|oxidative-damage-protection-protein	gnl\|CDD\|180059	PRK05408, PRK05408, oxidative damage protection protein; Provisional.	1.48096e-55
NZ_CP011011.1\|WP_096042236.1\|2987009_2988614_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.7618e-23
NZ_CP011011.1\|WP_096041474.1\|2980263_2981301_+\|IS110-family-transposase	gnl\|CDD\|376773	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS116, IS110 and IS902. This region is often found with pfam01548. The exact function of this region is uncertain. This family contains a HHH motif suggesting a DNA-binding function.	1.07009e-19
NZ_CP011011.1\|WP_096042231.1\|2975456_2976872_-\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	8.94584e-64
NZ_CP011011.1\|WP_004588455.1\|2964012_2964354_-\|30S-ribosomal-protein-S6	gnl\|CDD\|179034	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed.	2.87159e-53
NZ_CP011011.1\|WP_004589600.1\|2968649_2969972_-\|Xaa-Pro-aminopeptidase	gnl\|CDD\|182804	PRK10879, PRK10879, proline aminopeptidase P II; Provisional.	0
NZ_CP011011.1\|WP_096042228.1\|2966283_2967450_-\|FAD-dependent-monooxygenase	gnl\|CDD\|236139	PRK08013, PRK08013, oxidoreductase; Provisional.	1.72435e-154
NZ_CP011011.1\|WP_096042229.1\|2967446_2968634_-\|2-octaprenyl-6-methoxyphenyl-hydroxylase	gnl\|CDD\|235584	PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated.	3.26735e-159
NZ_CP011011.1\|WP_055254809.1\|2992380_2993301_+\|GTP-cyclohydrolase-I-FolE2	gnl\|CDD\|237466	PRK13674, PRK13674, GTP cyclohydrolase I FolE2.	1.74511e-116
NZ_CP011011.1\|WP_024031608.1\|2993415_2994012_+\|DUF2726-domain-containing-protein	gnl\|CDD\|371282	pfam10881, DUF2726, Protein of unknown function (DUF2726). This bacterial family of proteins has no known function.	7.84421e-44
NZ_CP011011.1\|WP_096042237.1\|2989835_2992154_-\|aerobic-respiration-two-component-sensor-histidine-kinase-ArcB	gnl\|CDD\|236842	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional.	0
NZ_CP011011.1\|WP_054983838.1\|2971070_2974154_-\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NZ_CP011011.1\|WP_096042234.1\|2985059_2985785_+\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	gnl\|CDD\|234649	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.	2.74238e-109
NZ_CP011011.1\|WP_096042235.1\|2985829_2986855_+\|methyltransferase	gnl\|CDD\|181902	PRK09489, rsmC, 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC.	2.75505e-94

>NZ_CP011011.1|WP_167381750.1|2977094_2977727_-|antibiotic-biosynthesis-monooxygenase
MITQIVKFDIKDEHIAQFKALLEEDKQGAKAETGLIEMRLYQDKNEPGVFFAYERFEDQNAVDYHGAQDYTQTLLNALPEISQSAPQVMLLENTVPAPLHERNTKVVNPEDDICIVFFIFKIKPSFKNKVIERFATHVTQTRSQEPGNLVFDLYSIENNDDTLVVYEHWRSESALWDIHFKQPYAVKTSELLAQAVVGDMQQYMSFVKEI
>NZ_CP011011.1|WP_096042231.1|2975456_2976872_-|TolC-family-protein
MIWQTKPTLLALSLVLLSGCAGTLNPQQREQAPSDIAATWQHGLAQNTLAVDQQWLQTLENPYIENLVNKALNNNQALLQSAYDVQIQKQQLVISGSALWPDLDLSAQTRRSKDNRPVSYDNASSVTLELSYEVDVWGKLSDAKRQANLNYLAQQASFEQAKQQLVADVVTGWFDLVTAQQLLDLYKRREENAQQNLDIIESGYRQGINEALDVYLARNELNNERTRIANQQATLVSASRSLERLLGGYPKGVISAEVELPVFLSPINTGIPSELITRKPQLRASWYQLLASDAGLAYAHKQRFPSLNLSASVSDSTDRVSDLFSPSSLAWSLLGSISAPIFNGGQLKANEEVARLNAQKQEQAYLDTLYDAFSDVENAITQQQSLQASYKSTLEAQENALAAEQLSFEQYQSGLVTYTTVLDAQSRSFDAQSSLIETKNQLIANRINLYVALGGDFNAPTSEPKSNNDEN
>NZ_CP011011.1|WP_096042230.1|2974150_2975467_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MKTKSAKLLIPAVVVVATILIVMFIKGNPPEAKRFGSPPKATVSVSVKKIEPQDYLIFIDSYGTVKPRTQSLLVAQASGQINKVSDDFREGGFFEKGDVLLQLDDRDHQAEVKSAQAALLTAEQSLLEEKARGQQAITDWKRLGGSSQANSLVLREPQLAAAQAQVLSAQAALEKAQLDLERTQITAPYAGRVLSRNVDLGQVVSENTELATIYAIDSVEVRLPIKNKDLSYISLPEQYRDGSKNQAGSLVKFKSDLVGEQTWQGQIIRTEGAIDEGAQQLYIVAQINDPYKATANNQYPIKIGQYITAQISGKTVPDALIIPNSTIYQGSYVYVVEEGLLKRKNITLAWQNATQAMVKTGLNAGDKLVITPLGQVSSGTAVSILGETDTQNMRAKGPNGAGKGKRPSREQLEKKAQEMGISVEELIQKRRAAQGDKP
>NZ_CP011011.1|WP_054983838.1|2971070_2974154_-|efflux-RND-transporter-permease-subunit
MIAWFTKNHVAANLLLITLLLSGLFSLSSQIPLEVFPSFETDRISVSVTLRGSTPEDVEQGVTIRIEEAVQDLEGIEQISSRSSEGSASVTIEVESGYDPRELLADIKSRVDAINTFPADAEKPIVALAERKREVIAVTVASDYGEKETLEYAEQVRDDILRLPNVTQVELSGVRDYELAIEVSQDTLRQYNLTLAQISTAVAKSSSDISAGNLKTEGGDVLISSKGQAYRKDEFANIVVKNQSDGTVIRLGDIASINDDFEETPVRTRFNGKQAAFIDVYRIGPQSAIDVADDVKNYIESKQSSLPQGFELSYWDDDSQVVKSRIATLTSSALQGGILVLALLTLFLRPAIAFWVFIGIPVSFMGAFIAMPIFGVTLNIMSLFGFILVLGIVVDDAIVTGENVYTHLKTAESGEQAAILGTQEVATPVTFGVLTTVAAFLPLAFIEGARGALFAQIPVVVIPVLLFSLIESKFVLPAHLKYIKLRNQKTKSSKLEVLQQRFADGFESAILKYYQPILAKALRYKLATVSLFVGVFFIILTLITSGWTKFVFFPRIPSETVRVTLTLPTGTPFEVTNKYVMDMSQKAQLLQDKYRDEDTGESVILNILASTGGRGGVSNSGSVRFEITPAESRDSDIGSRELVSEWRDLIGIIPGAESVTFRAEIGRSSDPIDVQLSGTSLDTLQKIAESVKARLSTYPTVFDIADSMSDGKEELQIELTEQGFALGLNRVDVANQVRNSFFGSQVQRIQRGRDDVRVMVRLPIEERRSVADLQNILITTPTGGSVPLSHVATLIAGQSPSTINRIDRYRTLNVTADIEKSNTNMTALQADLTEYLDELMQQYPGVDYKLEGEAKEQRESFGSLAWALLFVFFIIYSLLAIPLKSYMQPIIVMSVIPFGMIGAVIGHWVMGMELTIMSLLGMLALIGVVVNDSLVLVDFINKKRSEGGKIIDAVKLAGAARFRPVMLTSLTTFIGLMPLLFEKATQAQFLIPMAVSLGFGIVFATFITLILVPVNYMLMERFQSWFR
>NZ_CP011011.1|WP_004589599.1|2969997_2970552_-|UPF0149-family-protein
MSDLPDYQKAQLLLEKNEIFVSPAEAHGVISGLLACGLSIDDKEYLGLLSDVFNDGQAFSNDLKQFFGTIYKQVVASFNDEAFAFDLFLPSDDETLIDQANGLVSWVAGFMLGFGLKQKDYGKLSADVKEVISDFSEITRLDTMFDETEEDSQALHEVIEYVRVSALLCFAELGKEKAPKKTLH
>NZ_CP011011.1|WP_004589600.1|2968649_2969972_-|Xaa-Pro-aminopeptidase
MVEIQKSEFKARRERLLAKMDANSVAIIPAASEVTRSRDTEYAFRQDSDFFYLTGFNEPDAVLVLCNNSDTPSTLFCLDKDKLAEIWHGRRIGFEKAKNEYLFDETYALSELTEQLLDLVNGQQILFYAQGAYPSFDTKVFTLLNTLRSAPKKGYQAPSTIKDVRGLIHEMRLFKSPSEVNIMREGCEISARGHMRAMRYSHPGATEFQLEAELHHHYAMNGAPHPAYGTIVGSGDNANILHYTQNSDVLKDGDLVLIDSGCELQGYAADITRTFPVNGKFSEPQAALYNIVLKAQEVAFEEVKPGGFMSHANKRAMEVMTQGLLDLGILTGDFDELMAKGACKEYYMHGLGHWLGLDVHDVGDYKQNNVERAFEPGMVLTIEPGLYISEDSNAPQQYKGIGIRIEDNLLITESGHENLTLSVPKTINDIEALMQSAKSA
>NZ_CP011011.1|WP_096042229.1|2967446_2968634_-|2-octaprenyl-6-methoxyphenyl-hydroxylase
MAKQFDVVVIGGGLAGASCALSIAKTNPSLAIAVVEANQVTGDYHPSFDDRSIALAQQSVEYLQQLNLFEPSAPYTAAIKKVSVSDRGHFGKAHISCDEFAKPSLGYVVEVNPFGRALYQRLTQASIALYCPDSVSAIKQSLNSNEVTLQSGEQLNTKLLVIADGAKSPTRNLLGLGFNTQPYEQGAIIANVEVAGGHNNHAYERFTEHGPMALLPMSNSRYSLVWCMKQQHVEQHTALNENDFLNALQSAFGYRAGQFTKVGTRTSYPLVYGQAESLTAHRTVVIGNAAHAIHPIAGQGFNLGLRDVQVLSNLIATSKNELGSYAFTREYSQKRSSDINTVMSLTDALVRLFSNSSRVLALGRSIGLFSMDLFPALKAPLAKQLMGQVKQGTRL
>NZ_CP011011.1|WP_096042228.1|2966283_2967450_-|FAD-dependent-monooxygenase
MKQAQVCIVGGGCVGLTLALGLAKANVSVVVLDAAPKQLPPSDEYALRVSALSIASQNLFEQLNVWPHIMAERACAYTHMDVRDADSFGKITFNNEQLELEHLGHIVENDIIRFALIKELEQQPSATLMFDTEYQQIHQSESDVFITLKSGEPIIAKLLVAADGANSAIRKQFNMALSFKDYDHHALVATVKTKEPHANTARQVFLPTGPLAFLPLSDANTHSIVWSTSPNHCDELLAMDDTTFNKAVMAAIDGQCGLCEVQSKRAAFPLKMRYAQQWVSGKVVLMGDAAHTIHPLAGLGMNLGLKDAAYLIELLTSDSKEFASTRTLRDYERTRKLDAQKHIAMMQGLKELFEGANPVKKLIRGVGLSLVDNLGPIKHLFAKEAIGK
>NZ_CP011011.1|WP_096042227.1|2964794_2965994_+|alpha/beta-hydrolase
MKLLLSFVFALTFSTSFLSHADTATTEITVGKKVILQSKILNEDRPIRIFIPDTVKDDQPLYIIYLLDGVEHFHTASGVIKSLVDYEQIPNAMLVGIDTTNRVRDYLPKVDGEPKTEFQTFVKNKWPDAGQTGNFLKFVSDELMPYINSNYSTNGYNTLIGHSNAGTLALYTLVNQPELFNNYIAISPNSWWSDEELKNNIIKYTKNPKGTQELFISVASEGARFYTGALNTLVNLEQQMPTQLKWEYKHYPTFTHMGTILPALSDSLIHLFSDLIFKVTDEHGKFADVSLITGYYQALSDKYGFELKIPQDVYVEFAHRQQKFDNTKKAITTLKHFTRDYPNAAYSHMRLSQGYTADKQFKEAVTSMKHALKLAKQNSRDPLLIDALQDMVNEAQANL
>NZ_CP011011.1|WP_004588455.1|2964012_2964354_-|30S-ribosomal-protein-S6
MRHYEIVFMVHPDQSEQVSGMIERYTGSITEAGGTIHRLEDWGRRQLAYPINKLHKAHYVLMNVEAPTEVISELETTFRYNDAVLRNLVMRTKNAVTEASPLAREEKKEAPAA
>NZ_CP011011.1|WP_096041474.1|2980263_2981301_+|IS110-family-transposase
MKLYGGIDLHSNNCVIAIINEQGETLTCKRLNNDTSVILSFLTPYKDNLKGLVVESTFNWYWLVDALMDEGFTLHLANPAAIQQYSGLKHADDHSDACWLAEMLRLNILPEGYIYPRELRAVRDLMRKRMDIVQQSTKNLLSVQSCYMRHLGYKLSSNKIKQMAAIRKGVNVEQVHADFSSMNTALSVISNLSLIRCAQQQINVIEGAILKQTSLSPEFMNLTSIDGIGNTLALTIMLETGTIKRFNSPGNFSSYCRCVKGARYSNGKKKGATNQKNGNRYLAWAFTEAANFAIRYNPTIKKYYQRKLAKTNKVVAIKTVAHKLARACYHVLKDNVPFDEHKAFA
>NZ_CP011011.1|WP_004587535.1|2983530_2983803_-|oxidative-damage-protection-protein
MARTVFCQKLQKEAEGLGFQLYPGELGEKIFNNISKEAWGQWQHKQTMLINEKHLNMMDPEHRTFLEEQMVGFLFEDKDVEIEGYRPPEK
>NZ_CP011011.1|WP_096042233.1|2983836_2984898_-|A/G-specific-adenine-glycosylase
MLDLNKQQSDKFANQVVQWYHLHGRKTLPWQLGKTPYKVWVSEVMLQQTQVVTVIPYFEKFMASFPDIIALANADEDLVLHHWTGLGYYARARNLHKTAKIVRDKYQGKFPTTLEEVMDLPGIGRSTAGAVLSLSLGQHHPILDGNVKRVLARYFMVEGWYGVKKVENQLWHLSTQLTPKNNVTEFNQAMMDLGASLCSRSRFDCQACPLNSDCGAFNAGKVKQFPHSKPKKVVPKKSCHQLIIQHNEKVLMEKRPSSGIWGGLFGFFEFNEYSEMVLFLNQQGLKTELEELTPFTHVFSHFELTINPHVLNINNVPDVVNDKQLVWYPLDQSIEVGLAAPTKKLVKQMSPIG
>NZ_CP011011.1|WP_096042234.1|2985059_2985785_+|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB
MSESSNNNLEQAKQEGKYIRTIRSFVKREGRLTKGQAAAIEKCWPTMGLEHKNGLLDLAQVFGNNNDVVLEIGFGMGKSLVEMAKNAPHLNFIGIEVHRPGVGACLMDADEAGVTNLRVFEHDAVEVLADCLADESLTTLQLFFPDPWHKKRHHKRRIVQTEFAEKLRSKLKIGGVFHMATDWENYAEHMLEVMQAAPGYKNQSSTNDYVPRPDSRPLTKFEQRGHRLGHGVWDLMFERTK
>NZ_CP011011.1|WP_096042235.1|2985829_2986855_+|methyltransferase
MSILTNPSLLLLRNSEELVGRSILVVNFVQDGFLAELKQLNPQSAITAFSYNHANGEFAKKINGINVCVNHEMAANDYDLVILYYPKSKPEVLMALDNIRAVINEKAQLLVVGENKSGVKSIEKQLAGKAQYSNKIDSAKHCILFSFEQLENNPTFEISRYHKTFRVNVAGVEFDAISVPGVFNHGALDAGTKMLLENAPTTKQGNVLDFGCGAGLIATFLGIKNPALTFTCSDVSALATYATEQTLKLNNIKGGTILSDGLKSISGKFDLVVSNPPFHTGIATDYTIAEAFLSNAKQHLTKVGKLSIVANSFLKYPPILEAQFGSFHTVYKNNKFAVYSS
>NZ_CP011011.1|WP_096042236.1|2987009_2988614_+|HAMP-domain-containing-histidine-kinase
MPKKVHQKSIRKALINTIMLITAICLTLSVSISTYMSVKEQKELIINKLVILSDIVAFDAADSLVKDDRKTEEKRLKSFDKIPLVKNIHIYAIEKTSSKPVFFISFNAKKTPPVPLRVDSIKELNEPRVTNNYIELITPVLNNEQVVGYVYMRGSLESLDEFIKQKIIIDIFLTLFILFFVYFIAIKTQKSIANPIEHLSVLLQDVSKNHNYDVRAPSTSVKEVTALSNSLNIMLTRTRKQIERHEKDKLEIKQLNQSLEEKVSQRTIALREANQELLSTLERMHQYQEQIVENEKMASLGQMVAGVAHEVNTPIGLGITGSTLLRDKLADIQLSFDNKSLTSNQLKRFIDEGIENLDLIYRNLNRAADLISNFKKVAVIQDDGIKTHVNIHRLISDVLMSIQSELINSKPNVVINCPSDLTIESKSEPLQQIFQQLILNSAIHGFSNSENNEIKFDIEITGPQIKIIYTDNGQGVDKNVKNRIFDPFVTSKRGQGASGLGMHLVYNLVTQALGGHILYDLDAKPGVRFVITIP
>NZ_CP011011.1|WP_004587530.1|2989104_2989821_+|two-component-system-response-regulator-ArcA
MQTPVILIVEDEDVTRLNLVSLFEAEGYKVIEAIDGDDMHDKLTNNDDVNLVVMDINLPGKNGLILARELRQKRKVGLIFLTGRDNDVDRILGLEIGADDYITKPFNPRELTIRARNLITRTALGGEESVLETNGVITFNGWELDENSRCLTSPNGDAKRLPKGEYRALRLMLDSPGRIFSREQLIKHMTGRELRANDRTVDVTIRRIRKHFESDNSTSELISTIHGEGYRFIGKIDA
>NZ_CP011011.1|WP_096042237.1|2989835_2992154_-|aerobic-respiration-two-component-sensor-histidine-kinase-ArcB
MTDSSLSPWARVLSSLITRFGELKTAAMCYALLLGVSLILSSMFYYVALGEVNLVDILAVVFFTAVVSPFMISILLNSIRQLDASYAYLDSATKQEKLLNQTLKDNINRLNIEIDERKMAFHAKHRAIEELRREIAERKKTQQELAQQGMLLRSIVDSSPDLFYYRDNNGVFAGCNKMFEEVMGKTSAELIGKTVEQIFPSYFLAEVLRTDKQVEQTHQALTIDVEYMVNGENRWFELRKLPFINDQGDYIGLLAFGRDITSRKEAAQALETAYKDKGKFIATLSHELRTPLNGIVGLTRMLLDTELNKQQRSWCNTVFSSAETLGNIFNDIIDLDKIDREQLDIATDSINVSDFINDVVNFAGLIAEQKELEFSIERNGTLDVYALLDPTRLRQVVWNLINNAVKFTQHGEVKLTCSREERNDGPWLELKISDTGQGIPEEQLSRIFDMYYKAPDLSGKNAIGSGIGLAVTKALVSAMKGTISVTSTEGEGSCFTVHIPLSLCVAPTEQSYAGRGLYILLVEDVPLNAEIATNLLEQRGHEVIWAETGEDALSFVETEDELDLVLLDMQLPDINGDEVARQIRADSHFDKLPIVALTANVRSAEEDLEGISVQGALAKPINTIKLDKMLADLFDIQQSESDKPLLTVSKEALEGINAGVLDVETIEDFVNSMGLEVFKRSSGLFEKLNPQYQQELQSALNENDREEYKSVAHKLKGAAGSVGLNDVQLHAKKMEHGALDELDEVLREWLDTLADKINEGQIALHSFLQLLE
>NZ_CP011011.1|WP_055254809.1|2992380_2993301_+|GTP-cyclohydrolase-I-FolE2
MQTNMPDIADTAPALQTGKLDWVGMGEIELPFIFESKDLAPVTVNAKARAFVNLHKEDAKGIHMSRLFLALDLLSTEQQVNPQTLAQALDTFITSHEGLSDKAQIEFKFELPLRRKSLLSGKAGWKSYPITLTSTIENSVISYELSVDVTYSSTCPCSAALARQLIQNAFSEKFNQETLNQKDVLAWLGTTQGIVATPHSQRSIANVKVKLDNTISEFDVVNLIDTLEAELKTPVQAAVKREDEQEFARLNGQNLMFCEDAARKIKAVLENDNFSDYWLQINHYESLHAHDAVAIAVKGIEGGYKA
>NZ_CP011011.1|WP_024031608.1|2993415_2994012_+|DUF2726-domain-containing-protein
MEFALLSILVLVVGASVVASKFSDDGGNPYPFTRKQTVFTQVEGAFLNLLERAVGDQYKIVSRVKLIDVIDCKQGLSAKSKRAALAKAKNKQLDFVLVDKEKMTIVAAVDLVNNANKDGHKAQRDWFVNGALESAGIPHIRMKVKSGYRPSEVRDAIMFKLGKPAAVQSARPTRNRVSKPAVLSPSQAKAQTTALAEI

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

824793 : 832990

uncultured_Mediterranean_phage(28.57%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004586186.1\|824793_825558_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	3.3e-70	54.3
WP_004586187.1\|825547_826186_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.4e-34	51.2
WP_096041261.1\|826195_826774_+	DedA family protein	NA	NA	NA	NA
WP_096041262.1\|826815_827640_+	peptidoglycan DD-metalloendopeptidase family protein	G3MBP9	Bacillus_virus	9.0e-05	36.7
WP_055252851.1\|827675_828650_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	2.7e-32	35.7
WP_096041263.1\|828782_831368_-	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	2.3e-38	27.1
WP_096041264.1\|831389_831881_+	nicotinamide-nucleotide amidohydrolase family protein	B5TK85	Pseudomonas_phage	2.5e-23	41.6
WP_004586193.1\|831946_832990_+	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	3.8e-117	62.5

DBSCAN-SWA_2

896061 : 959169

Leptospira_phage(25.0%)

transposase,integrase

attL 896046:896105|attR 961129:962329

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
896046:896105	attL	NA	NA	NA	NA
WP_096041288.1\|896061_897176_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	7.8e-44	38.7
WP_004586239.1\|897974_898493_+	RNA pyrophosphohydrolase	NA	NA	NA	NA
WP_096041289.1\|898522_900787_+	phosphoenolpyruvate--protein phosphotransferase	A0A1V0SGR7	Hokovirus	3.0e-18	28.1
WP_096041290.1\|900859_901669_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_004586242.1\|901679_902483_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA
WP_096041291.1\|903169_904405_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_096041292.1\|904401_907269_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_096041293.1\|907268_909389_+	hypothetical protein	NA	NA	NA	NA
WP_096041294.1\|909385_909871_+	hypothetical protein	NA	NA	NA	NA
WP_096041295.1\|909875_910727_+	thymidylate synthase	H9EB68	Vibrio_phage	1.0e-128	75.6
WP_096041296.1\|910930_912415_-	DEAD/DEAH box helicase family protein	NA	NA	NA	NA
WP_096041297.1\|912401_912923_-	hypothetical protein	NA	NA	NA	NA
WP_096042541.1\|913054_913300_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_096041298.1\|913382_915119_+	type I restriction-modification system subunit M	A0A220A2U4	Liberibacter_phage	5.3e-100	42.4
WP_096041299.1\|915111_916335_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_096041300.1\|916356_917670_+	hypothetical protein	NA	NA	NA	NA
WP_096041301.1\|917947_918808_+	EcsC family protein	NA	NA	NA	NA
WP_096041302.1\|919137_919290_-	hypothetical protein	NA	NA	NA	NA
WP_096041303.1\|919507_922543_+	HsdR family type I site-specific deoxyribonuclease	A0A220A398	Liberibacter_phage	4.1e-79	27.7
WP_096041304.1\|922546_923275_+	M48 family metallopeptidase	NA	NA	NA	NA
WP_096041305.1\|923367_923691_+	hypothetical protein	NA	NA	NA	NA
WP_157742988.1\|924093_924948_+	hypothetical protein	NA	NA	NA	NA
WP_096041307.1\|925661_926357_-	hypothetical protein	NA	NA	NA	NA
WP_096041308.1\|926467_927898_-	hypothetical protein	NA	NA	NA	NA
WP_074498699.1\|928916_929294_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_096041309.1\|929336_929726_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_029771726.1\|929804_930536_+	transglutaminase family protein	NA	NA	NA	NA
WP_029771724.1\|930522_931410_+	cation transporter	NA	NA	NA	NA
WP_024602003.1\|931481_934610_-	CusA/CzcA family heavy metal efflux RND transporter	NA	NA	NA	NA
WP_096041310.1\|934620_935517_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_002962255.1\|935587_936880_-	TolC family protein	NA	NA	NA	NA
WP_008109688.1\|936953_937274_-	hypothetical protein	NA	NA	NA	NA
WP_008109690.1\|937331_937976_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_029771720.1\|938075_938975_-	cation transporter	NA	NA	NA	NA
WP_028835965.1\|939140_939491_+	hypothetical protein	NA	NA	NA	NA
WP_096041311.1\|939574_940792_+	TolC family protein	NA	NA	NA	NA
WP_096041312.1\|940856_942113_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_029772416.1\|942124_945325_+	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	1.5e-60	22.1
WP_096041313.1\|945627_946212_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_096041314.1\|946312_946864_-	carboxymuconolactone decarboxylase	NA	NA	NA	NA
WP_096041315.1\|946903_947146_-	DUF2798 domain-containing protein	NA	NA	NA	NA
WP_096041316.1\|947294_948218_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_096041317.1\|948290_948806_-	DoxX family protein	NA	NA	NA	NA
WP_096041318.1\|949465_949918_+	hypothetical protein	NA	NA	NA	NA
WP_029772239.1\|950347_951502_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_096041319.1\|951618_951939_+	hypothetical protein	NA	NA	NA	NA
WP_004586244.1\|952545_953424_+	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	1.0e-62	46.9
WP_096041320.1\|953804_954503_+	SPOR domain-containing protein	NA	NA	NA	NA
WP_157742989.1\|954761_955292_+	SPOR domain-containing protein	NA	NA	NA	NA
WP_096041322.1\|955451_956045_+	hypothetical protein	NA	NA	NA	NA
WP_096041323.1\|956058_956751_+	hypothetical protein	NA	NA	NA	NA
WP_096041324.1\|956759_957437_+	flagellar biosynthesis protein FlgO	NA	NA	NA	NA
WP_096041325.1\|957930_959169_+\|integrase	tyrosine-type recombinase/integrase	A0A1V0E8G8	Vibrio_phage	1.0e-100	44.1
961129:962329	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP011011

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection