CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP017143	Aeromonas salmonicida subsp. masoucida strain RFAS1 chromosome, complete genome	10 crisprs	WYL,csa3,DinG,DEDDh,cas3	24
NZ_CP017145	Aeromonas salmonicida subsp. masoucida strain RFAS1 plasmid unnamed2, complete sequence	0 crisprs	NA	1
NZ_CP017144	Aeromonas salmonicida subsp. masoucida strain RFAS1 plasmid unnamed1, complete sequence	0 crisprs	NA	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP017143_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017143_1

369007-369106

Orphan

Consensus_repeat	Method
TGCCTGCGCCGATAAAGGCGAGG	CRISPRCasFinder

1 spacers

DinG

The CRISPR arrays of NZ_CP017143_1

>merge|NZ_CP017143|1|369007-369106|CRISPRCasFinder
TGCCTGCGCCGATAAAGGCGAGGATTCTCTGCTGCATCAAACACTCCTGTGGATGAAATGGCTGCAAACACCTGCGCTGCCTGCGCCGATAAAGGCGAGG

>NZ_CP017143|1|1|369007-369106|CRISPRCasFinder
TGCCTGCGCCGATAAAGGCGAGG	ATTCTCTGCTGCATCAAACACTCCTGTGGATGAAATGGCTGCAAACACCTGCGC
TGCCTGCGCCGATAAAGGCGAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017143.1\|WP_005320479.1\|367339_367639_-\|YggU-family-protein	unknown	unknown	gnl\|CDD\|179931
NZ_CP017143.1\|WP_005320465.1\|370944_372054_+\|PilT/PilU-family-type-4a-pilus-ATPase	unknown	unknown	gnl\|CDD\|227341
NZ_CP017143.1\|WP_005320497.1\|361217_361658_-\|copper-chaperone-PCu(A)C	unknown	unknown	gnl\|CDD\|377298
NZ_CP017143.1\|WP_017412061.1\|374399_375110_+\|methyltransferase	unknown	unknown	gnl\|CDD\|226608
NZ_CP017143.1\|WP_085941509.1\|376684_376948_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017143.1\|WP_011899099.1\|366533_366833_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017143.1\|WP_005320451.1\|377370_377829_-\|zinc-uptake-transcriptional-repressor-Zur	unknown	unknown	gnl\|CDD\|183251
NZ_CP017143.1\|WP_011899101.1\|375301_376609_+\|branched-chain-amino-acid-transport-system-II-carrier-protein	unknown	unknown	gnl\|CDD\|283235
NZ_CP017143.1\|WP_005320466.1\|369874_370909_+\|type-IV-pilus-twitching-motility-protein-PilT	unknown	unknown	gnl\|CDD\|225364
NZ_CP017143.1\|WP_011899098.1\|364819_366424_+\|peptide-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|185059
NZ_CP017143.1\|WP_005320477.1\|367638_368190_-\|YggT-family-protein	unknown	unknown	gnl\|CDD\|376765
NZ_CP017143.1\|WP_005320464.1\|372085_372859_+\|peroxide-stress-protein-YaaA	unknown	unknown	gnl\|CDD\|234999
NZ_CP017143.1\|WP_005320482.1\|366901_367321_-\|DUF4426-domain-containing-protein	unknown	unknown	gnl\|CDD\|379616
NZ_CP017143.1\|WP_005320452.1\|376919_377381_-\|chemotaxis-protein-CheX	unknown	unknown	gnl\|CDD\|381734
NZ_CP017143.1\|WP_096071827.1\|373047_374271_-\|ATP-dependent-RNA-helicase-SrmB	DinG	COG1199_DinG_CAS-IV-A	gnl\|CDD\|236877
NZ_CP017143.1\|WP_005320489.1\|363944_364652_-\|chromosome-partitioning-protein-ParB	unknown	unknown	gnl\|CDD\|378068
NZ_CP017143.1\|WP_005320467.1\|369133_369835_-\|YggS-family-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|143497
NZ_CP017143.1\|WP_085941508.1\|361717_362497_+\|enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|235852
NZ_CP017143.1\|WP_005320492.1\|363234_363897_+\|CatB-related-O-acetyltransferase	unknown	unknown	gnl\|CDD\|100040
NZ_CP017143.1\|WP_005320494.1\|362500_362929_-\|DUF2753-family-protein	unknown	unknown	gnl\|CDD\|287867

Protein	Function_ID	Function_description	E-value
NZ_CP017143.1\|WP_005320479.1\|367339_367639_-\|YggU-family-protein	gnl\|CDD\|179931	PRK05090, PRK05090, hypothetical protein; Validated.	7.2285e-55
NZ_CP017143.1\|WP_005320465.1\|370944_372054_+\|PilT/PilU-family-type-4a-pilus-ATPase	gnl\|CDD\|227341	COG5008, PilU, Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion].	0
NZ_CP017143.1\|WP_005320497.1\|361217_361658_-\|copper-chaperone-PCu(A)C	gnl\|CDD\|377298	pfam04314, PCuAC, Copper chaperone PCu(A)C. PCu(A)C is a periplasmic copper chaperone. Its role may be to capture and transfer copper to two other copper chaperones, PrrC and Cox11, which in turn deliver Cu(I) to cytochrome c oxidase.	6.17212e-42
NZ_CP017143.1\|WP_017412061.1\|374399_375110_+\|methyltransferase	gnl\|CDD\|226608	COG4123, COG4123, Predicted O-methyltransferase [General function prediction only].	5.11955e-75
NZ_CP017143.1\|WP_005320466.1\|369874_370909_+\|type-IV-pilus-twitching-motility-protein-PilT	gnl\|CDD\|225364	COG2805, PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion].	0
NZ_CP017143.1\|WP_005320451.1\|377370_377829_-\|zinc-uptake-transcriptional-repressor-Zur	gnl\|CDD\|183251	PRK11639, PRK11639, zinc uptake transcriptional repressor Zur.	2.04149e-52
NZ_CP017143.1\|WP_011899101.1\|375301_376609_+\|branched-chain-amino-acid-transport-system-II-carrier-protein	gnl\|CDD\|283235	pfam05525, Branch_AA_trans, Branched-chain amino acid transport protein. This family consists of several bacterial branched-chain amino acid transport proteins which are responsible for the transport of leucine, isoleucine and valine via proton motive force.	2.17155e-144
NZ_CP017143.1\|WP_011899098.1\|364819_366424_+\|peptide-ABC-transporter-substrate-binding-protein	gnl\|CDD\|185059	PRK15104, PRK15104, oligopeptide ABC transporter substrate-binding protein OppA; Provisional.	0
NZ_CP017143.1\|WP_005320477.1\|367638_368190_-\|YggT-family-protein	gnl\|CDD\|376765	pfam02325, YGGT, YGGT family. This family consists of a repeat found in conserved hypothetical integral membrane proteins. The function of this region and the proteins which possess it is unknown.	2.32154e-12
NZ_CP017143.1\|WP_005320464.1\|372085_372859_+\|peroxide-stress-protein-YaaA	gnl\|CDD\|234999	PRK02101, PRK02101, peroxide stress protein YaaA.	1.02245e-150
NZ_CP017143.1\|WP_005320482.1\|366901_367321_-\|DUF4426-domain-containing-protein	gnl\|CDD\|379616	pfam14467, DUF4426, Domain of unknown function (DUF4426). Members of this entry are found mostly in g-proteobacteria, especially in Vibrio. Strangely enough, there seems to be one eukaryotic homolog in Nematostella vectensis (NEMVEDRAFT_v1g226006), where the PA0388-like domain is fused with a domain homogous to the Methionine biosynthesis protein MetW (see below). In several Pseudomonas species, but also in Vibrio vulnificus and Azotobacter vinelandii PA0388 homologs are genomic neighbors of Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) and Methionine biosynthesis protein MetW. On the other hand, in most Vibrio species it appears as a part of a conserved operon involved in possible response to stress.	4.01045e-58
NZ_CP017143.1\|WP_005320452.1\|376919_377381_-\|chemotaxis-protein-CheX	gnl\|CDD\|381734	cd17906, CheX, chemotaxis phosphatase CheX. This family contains CheX CheY-P phosphatase which is very closely related to CheC chemotaxis phosphatase; both dephosphorylate CheY, although CheC requires binding of CheD to achieve the level of activity of CheX. CheX has been shown to be the most powerful CheY-P phosphatase of the CheC-FliY-CheX (CXY) family. Structural and functional data of CheX and its CheY3 substrate in Borrelia burgdorferi (the causative agent of Lyme disease) bound to the phosphoryl analog BeF3(-) and Mg2+ reveal a unique mode of binding, but a catalytic mechanism which is virtually identical to that used by the structurally unrelated CheZ, providing a striking example of convergent evolution. Thus, CheX is quite divergent from the rest of the CXY family; it forms a dimer and some may function outside chemotaxis. The data also suggest a possible CheX regulatory mechanism through dissociation of the CheX homodimer.	2.53743e-52
NZ_CP017143.1\|WP_096071827.1\|373047_374271_-\|ATP-dependent-RNA-helicase-SrmB	gnl\|CDD\|236877	PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.	0
NZ_CP017143.1\|WP_005320489.1\|363944_364652_-\|chromosome-partitioning-protein-ParB	gnl\|CDD\|378068	pfam08857, ParBc_2, Putative ParB-like nuclease. This domain is probably distantly related to pfam02195. Suggesting these uncharacterized proteins have a nuclease function.	1.22063e-70
NZ_CP017143.1\|WP_005320467.1\|369133_369835_-\|YggS-family-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|143497	cd06824, PLPDE_III_Yggs_like, Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.	4.9929e-133
NZ_CP017143.1\|WP_085941508.1\|361717_362497_+\|enoyl-CoA-hydratase	gnl\|CDD\|235852	PRK06688, PRK06688, enoyl-CoA hydratase; Provisional.	7.64876e-86
NZ_CP017143.1\|WP_005320492.1\|363234_363897_+\|CatB-related-O-acetyltransferase	gnl\|CDD\|100040	cd03349, LbH_XAT, Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.	3.73127e-64
NZ_CP017143.1\|WP_005320494.1\|362500_362929_-\|DUF2753-family-protein	gnl\|CDD\|287867	pfam10952, DUF2753, Protein of unknown function (DUF2753). This bacterial family of proteins has no known function.	8.70931e-75

>NZ_CP017143.1|WP_005320477.1|367638_368190_-|YggT-family-protein
MNTAYFLINTIFDIYLMVVLLRVWLQWARADFYNPMSQMVVKVTNPLVIPLRRVIPGFGGVDMASVLLAIIIAFAKLALLKSMNVLLADWLTISLFAALTVLKKAGSMIFWVLLIRAILSWVSQGRNPIEHVMHQLTEPFLAPIRRILPALGGLDLSVLVAFIGLQAINYLLGDLFGQLWWMI
>NZ_CP017143.1|WP_005320479.1|367339_367639_-|YggU-family-protein
MPAVLREGDELILHLMIQPKASRDQIVGLHGDELKVAITAPPVDGQANSHLIKYLAKQFKVAKGQVRIVRGELGRHKTVAIESPRQIPAEIHALLETQG
>NZ_CP017143.1|WP_005320482.1|366901_367321_-|DUF4426-domain-containing-protein
MKTAWISCLLALLMTLPLRAEQMKELGPWQVHYSAFNSSFLTPDVAKAYGLERSRYNGIINIAVQNKQGVAQAVGITGEAKNLTGTLRTLTFQEVKEGDAIYYLAVLPYRNQDTYQFTLKIMGEGQQQTLTFQQTFYVD
>NZ_CP017143.1|WP_011899099.1|366533_366833_+|hypothetical-protein
MRFLLMIPLLVTLPAHAASESQCRQAFTDWMLTQHQQFSDRNASKMKRRLAERAIDQMRDEFAKQESFCQAMEWATHHQDQDPRFNPRPGEIHDFTPAS
>NZ_CP017143.1|WP_011899098.1|364819_366424_+|peptide-ABC-transporter-substrate-binding-protein
MKGWSPLLALLGCACVQAADVPPRTQLAAEQAVVRHLKDEPASLSPLKLVGLPELQVLRDLYEGLLTQGPDGKVLPGVATRWDNKDNQQFTFHLRPDARWSNGDKVKAADFVYGWRKLVDPKEAATFAWFAQLAHFTKVDEIVAGKLPPEALGVKALDEHTLQVTLSQPVPYFLSLLTHPSLSPLHQASMEQYGNQWTQPGKLVGNGAFVLSQRVVNEKLELAPNPHYWDRAHTVLTKVTFVPINQETAATNRYLAGDLHITESFPKEQYHKLMQQIPGEVHTPDQLGTYYYAFNTQLPPLNDVRVRKALSYTIDRGLIAAKVLGTGEKPAYRFTPDVTADFEPKANLLSSTSQQDLDARARVLLQEAGYGPAKPLKLTLLYNTAEIHKKMALAIANLWKQKLGAQVELTNQEWKTYLDSRQSGQFEVIRSSWVADYNDPSAFLGLWGSRHSGNMARFANARYDEILTQAAKSRDPGERARLFDEAESILQDEAPIAPIYQYTNARLIKPWLKGYPINNPEDVAYSRQLYLIKH
>NZ_CP017143.1|WP_005320489.1|363944_364652_-|chromosome-partitioning-protein-ParB
MRAWILLALAISQGAWALAPCERETQVGSWCEVNIDQLHPTQGGVGQIQVDNTQAELAGKSEKQLDKVMKKKEIPIVIAPDGGYWLVDRHHLTKALWQLGVKQARVKVIARLQDKSSFWSQMQGNHWAWLKDEKGAPLTPEQLPVHIGDLPDYPYRTVAGMLQDAGYFEKRDQVYFVEFAWASWLGQQLNWLPVDGASLMERLNQAKRLACSSKASDLPGYPGKQCRVNQSRSGS
>NZ_CP017143.1|WP_005320492.1|363234_363897_+|CatB-related-O-acetyltransferase
MKHCQHWSQVEYLHLTVTNPNISLKGQHSYYSGAWDGPFEEEAVRYLHGDSWSRSPDTGWEPLWHIDRLHIGDYVQIAAGVKIIMGGNHTHNPAFISTYPFADPDALKRSYRPAGDTRIGNDVWIGMDAMIMPGVTIGDGAIIAARSLVTQDVPPYCMVAGAPARVIRQRFAVQETTRLQALAWWDWPDEQVQALLPLIQQGEVALLEQAAARWHSAEQE
>NZ_CP017143.1|WP_005320494.1|362500_362929_-|DUF2753-family-protein
MTHHIWQRYMLEAENALGAGALGAAICLYQQALAEVYELASDDLDELASMRVATCHRLADFWRAMEEPAYELRYLKLASELVTALVPQCPNRECESLVSELGCCQAALISFLKRHPNPEIARLIQLQDKVQGCELIGRFRLN
>NZ_CP017143.1|WP_085941508.1|361717_362497_+|enoyl-CoA-hydratase
MAACDNKDLDMDPIIVAEQQDGLLTLTFNRPDKRNALNTDMYRALTQALRQATQDDAVHALLIQGQSDCFTAGNDLADFMGKSSLDADDPILQFLHTLADFPKPVIAAVGGPAVGIGTTLLLHCDLVYLGDNARLQLPFVELGLVPEFASSLLLPRAVGHLKAAELLLLAEAIDADEALRLGLANRVVAADELLALARDQGLKLAAKPPKALQKSKALLKQELKQAVHFVIDLEARAFSLALQGEEAQHRIAQRLKPRA
>NZ_CP017143.1|WP_005320497.1|361217_361658_-|copper-chaperone-PCu(A)C
MFKRAFYSLLALGLAAPALAKVEAVDGYVRLLPPGSPNTAAFLVLKNDADKPVKLVAAASPEVGRAELHTHLHENGVMRMRQVESIAIPAKGEVALKPGSFHVMLFEVRELSQGTPFPLTLTMDDGQTLELSLPVKPIEPMAGMQH
>NZ_CP017143.1|WP_005320467.1|369133_369835_-|YggS-family-pyridoxal-phosphate-dependent-enzyme
MSQIAQHLLQVKERIVQAARQADRCVDHINLLAVSKTKPLEAIREAYAAGQRRLGESYAQEAATKIDTLRKQAVCTDIEWHFIGPLQSNKSRLVAERFDWVQSVDRDKLIERLNNQRPAGLAPLNICLQINISGESSKSGTSEQEIFRLAELVSRSERLVLRGLMAIPEHTSDEAVLAAQMVRMQTLFTELAQQYPSVDTLSMGMTEDLELAIAHGSTMVRVGTAIFGARDYS
>NZ_CP017143.1|WP_005320466.1|369874_370909_+|type-IV-pilus-twitching-motility-protein-PilT
MDITELLAFSVKHKASDLHLSAGVPPMIRVDGEVRKINLPALEHREVHALIYDIMNDHQRKELEENFEVDFSFEVPNLARFRVNAFQQSRGSGAVFRTIPSTVLSLEDLDAPEIFRKISEYPRGLVLVTGPTGSGKSTTLAAMVNYINENFHHHILTIEDPIEFVHENKRCLVNQREVHRDTKSFSNALRSALREDPDIILVGEMRDLETIRLAMTAAETGHLVFGTLHTSSAAKTIDRIIDVFPGAEKDMVRSMLSESLRAVISQTLLKRIGGGRVAAHEIMMGIPAVRNLIREDKIAQLYSVIQTGMTHGMQTMDQSLKQLVSRGVVASLDAKAKAVDPNSV
>NZ_CP017143.1|WP_005320465.1|370944_372054_+|PilT/PilU-family-type-4a-pilus-ATPase
MNLDALLAELVARKGSDLFITVGTPPTLKINGHLVSLGSEALDKQSALTLVRETLSPEHFERYIRTREGNYAIHREALGRFRVSAFWQQELPGMVVRRIETRIPTFDELTLPPILQEVAMAKRGLVLFVGATGTGKSTTQAAMIGYRNQNADGHILTVEDPVEFVHQHGRSLITQREVGIDTESFDVALKSSLRQAPDVILIGEIRSQETMEFALQFAETGHLCLATLHANNANQALDRILHLVPQEKHRQLLFDLSFNLRAIVAQQLVPSLDGRRRFAAFEVLLNTPLITDIIRKGEVHRLKEVMTKSTELGMQTFDQALFTLFCAGQIGYSEALAHADSANDLRLLIKLSGREQMGAGTLDNVTLDE
>NZ_CP017143.1|WP_005320464.1|372085_372859_+|peroxide-stress-protein-YaaA
MLIVVSPAKTLDYESPLVISRFTQPQLLDHSAELITRARQLSPDQIASLMKISDKLAGLNAARFAQWQHDFHPDNARQALLAFKGDVYTGLAVEDFSDGDFDFAQAHLRMLSGLYGVLRPLDLMMPYRLEMGTRLDNSRGKDLYQFWGDVITQHINAALTAQGDEVLINLASDEYFKSVRPKALKGRIVTPVFKDEKNGQFKIISFYAKKARGMMARHIIKHRLTEVEQLTGFNVDGYYFVPEESDAHTLMFKRAEN
>NZ_CP017143.1|WP_096071827.1|373047_374271_-|ATP-dependent-RNA-helicase-SrmB
MSQSFDDFDLHPALNRALAEMGFTRPTTIQQMVLEPALDGRDILASAPTGTGKTAAFVLPALQHLLDFPRRKPGPCRMLILTPTRELALQVTAHAKALAVHTNLSIETIIGGVSHEEQLPALTKTTDIVVATPGRLLEYIDKEEFESHDIEVLVLDEADRMLDMGFVKDVNRIVAEARYRKHTMLFSATLEGAGLEKFANEILNEPVELHAEPPRSERRPITQWVHLADDAAHKLALLIHILKDLETQKAIVFVRTRERLAELSGQLQAAGIPCAWIRGEMEQSKRVESIRKFHAGEVPFLVATDVAARGIDLPNVSHVINYDMPYGTDVYVHRIGRTGRAGNRGCAISLVEAHDMGMVAKIERYTEERLKRRVIDELRPKHKEARVPVKKKKPKDGKKKSAKKKKK
>NZ_CP017143.1|WP_017412061.1|374399_375110_+|methyltransferase
MGRNSGFTFKQFHVEHDRCAMKVGTDGILLGAWAPVAETRRVLDIGTGSGLVALMLAQRSRSDCIIDAVELDMNAATQARENVAASPWETRINIMEGAIQDYQATPYDLIVSNPPYFGAGQSLRDPARALARHTGSLDSRDLLAACDRLLTPVGQVALVLPTAMADEILCISADYDLHGVCYTAVITRAGKEANRVLLLLGRGLNRCEQGEIVIHSAGGAYSDRYIQLTHPFYLKM
>NZ_CP017143.1|WP_011899101.1|375301_376609_+|branched-chain-amino-acid-transport-system-II-carrier-protein
MTKSLTLSDVLGLGFMTFAFYLGAGNIIFPPLAGYMAGEHLSLAMLGFLVTAVGLPLITIIAVAKAGNGWAGMTKFLPAGLATALAVAIYIIIGPAFAAPRTGLVAYEMGLKPFIGDMGQAGLAAYTVIFFGIAILVSLNQGKLMDTIGKYLMPVLMVLLLTLAVGVFVAPQGTIPSATGDYLEGPFVKGILEGYNTMDTLASLMFGALIIDLLRQKGINDYKSQFKYLAIAGLISAIGLSVVYVSLFQLGNTAAGVATDVSNGGAIVNAYVLSLFGQPGQFILAGIITLACFTTAVGLISACSDFFHNLTGMSYKKLVVLLGTICAIVANVGLSQLISLSIPVLVAIYPVAVALVLVTFLKGYFGRPRLAFRSVLMVAFLFGCLDGLGAAGMKMDAFAFLPLFDKGLAWLLPTLLACGLGMAVRSSEKLAAEAA
>NZ_CP017143.1|WP_085941509.1|376684_376948_-|hypothetical-protein
MPPSKSVSSNAMWKALKWLFIGWVLLLILSDVQISTSLYKYDDNKVVVSFPRWQADRPWGTFQWHAGRIETHWYGLEGKPKPIVPLL
>NZ_CP017143.1|WP_005320452.1|376919_377381_-|chemotaxis-protein-CheX
MKADFVNPFLLSLLNVLSTMAQLELRPGKPKRKMDELARGDVSGLIGMVGPQTRGSLSISFEKGLALEIMRRMLGEAPATINEEVTDMVGEITNMVTGGAKRMLGEKGYEFDMATPIIVSGPNHTITHRADGTKIMMPFESDYGRATIEICFE
>NZ_CP017143.1|WP_005320451.1|377370_377829_-|zinc-uptake-transcriptional-repressor-Zur
MNQDQLLQRAERLCEQRGIRFTPTRRQVFTLLAAHGNAISAYDLLAQLQQTEAHAKPPTVYRALDFLLEQGFAHKVESLNAFIFCCHFDHAHPMQLLICDECGDVVELHDTAIDSAFSEQAHQHGFTITNKTIEAHGQCARCTPTVGSQHEG

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Crispr_ID: NZ_CP017143_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017143_2

758355-758448

Orphan

Consensus_repeat	Method
TCTTCGCAATCTCAAGCTGTTTCTCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017143_2

>merge|NZ_CP017143|2|758355-758448|CRISPRCasFinder
TCTTCGCAATCTCAAGCTGTTTCTCCCCCACGCCAGCAAACGCGCCGCCGCAGGAATAGAAAGATGGATCTTCGCAATCTCGAGCTGTTTCTCC

>NZ_CP017143|2|2|758355-758448|CRISPRCasFinder
TCTTCGCAATCTCAAGCTGTTTCTCC	CCCACGCCAGCAAACGCGCCGCCGCAGGAATAGAAAGATGGA
TCTTCGCAATCTCGAGCTGTTTCTCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017143.1\|WP_005321291.1\|752057_752516_+\|dUTP-diphosphatase	unknown	unknown	gnl\|CDD\|234802
NZ_CP017143.1\|WP_005307500.1\|749335_749503_-\|50S-ribosomal-protein-L33	unknown	unknown	gnl\|CDD\|179075
NZ_CP017143.1\|WP_005321308.1\|760344_760536_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017143.1\|WP_042468352.1\|759299_760172_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|366132
NZ_CP017143.1\|WP_005321299.1\|754941_756591_+\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234679
NZ_CP017143.1\|WP_005321297.1\|754330_754519_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017143.1\|WP_042468353.1\|756747_758229_-\|ketol-acid-reductoisomerase	unknown	unknown	gnl\|CDD\|235368
NZ_CP017143.1\|WP_005321295.1\|753332_754169_+\|mechanosensitive-ion-channel	unknown	unknown	gnl\|CDD\|182386
NZ_CP017143.1\|WP_005321293.1\|752585_753182_+\|nucleoid-occlusion-factor-SlmA	unknown	unknown	gnl\|CDD\|181894
NZ_CP017143.1\|WP_017412961.1\|774944_775454_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	unknown	unknown	gnl\|CDD\|376377
NZ_CP017143.1\|WP_042468351.1\|760627_763198_+\|bifunctional-acetate--CoA-ligase-family-protein/GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|223972
NZ_CP017143.1\|WP_005321271.1\|749514_749751_-\|50S-ribosomal-protein-L28	unknown	unknown	gnl\|CDD\|234736
NZ_CP017143.1\|WP_017411691.1\|749887_750562_-\|JAB-domain-containing-protein	unknown	unknown	gnl\|CDD\|178801
NZ_CP017143.1\|WP_005321666.1\|774579_774882_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017143.1\|WP_005321651.1\|769622_770414_-\|glutamate-racemase	unknown	unknown	gnl\|CDD\|234851
NZ_CP017143.1\|WP_005321672.1\|775450_776575_+\|5-(carboxyamino)imidazole-ribonucleotide-synthase	unknown	unknown	gnl\|CDD\|235674
NZ_CP017143.1\|WP_005321654.1\|770530_772366_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|236730
NZ_CP017143.1\|WP_005321658.1\|772632_773535_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176120
NZ_CP017143.1\|WP_005321282.1\|750709_751912_+\|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC	unknown	unknown	gnl\|CDD\|235513
NZ_CP017143.1\|WP_005321648.1\|769112_769604_+\|RNA-binding-protein	unknown	unknown	gnl\|CDD\|240845

Protein	Function_ID	Function_description	E-value
NZ_CP017143.1\|WP_005321291.1\|752057_752516_+\|dUTP-diphosphatase	gnl\|CDD\|234802	PRK00601, dut, dUTP diphosphatase.	5.7864e-97
NZ_CP017143.1\|WP_005307500.1\|749335_749503_-\|50S-ribosomal-protein-L33	gnl\|CDD\|179075	PRK00595, rpmG, 50S ribosomal protein L33; Validated.	7.40188e-23
NZ_CP017143.1\|WP_042468352.1\|759299_760172_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|366132	pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3.	5.25801e-07
NZ_CP017143.1\|WP_005321299.1\|754941_756591_+\|glucose-6-phosphate-isomerase	gnl\|CDD\|234679	PRK00179, pgi, glucose-6-phosphate isomerase; Reviewed.	0
NZ_CP017143.1\|WP_042468353.1\|756747_758229_-\|ketol-acid-reductoisomerase	gnl\|CDD\|235368	PRK05225, PRK05225, ketol-acid reductoisomerase; Validated.	0
NZ_CP017143.1\|WP_005321295.1\|753332_754169_+\|mechanosensitive-ion-channel	gnl\|CDD\|182386	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS.	7.02959e-94
NZ_CP017143.1\|WP_005321293.1\|752585_753182_+\|nucleoid-occlusion-factor-SlmA	gnl\|CDD\|181894	PRK09480, slmA, division inhibitor protein; Provisional.	5.35e-120
NZ_CP017143.1\|WP_017412961.1\|774944_775454_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	gnl\|CDD\|376377	pfam00731, AIRC, AIR carboxylase. Members of this family catalyze the decarboxylation of 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR). This family catalyze the sixth step of de novo purine biosynthesis. Some members of this family contain two copies of this domain.	9.2067e-81
NZ_CP017143.1\|WP_042468351.1\|760627_763198_+\|bifunctional-acetate--CoA-ligase-family-protein/GNAT-family-N-acetyltransferase	gnl\|CDD\|223972	COG1042, COG1042, Acyl-CoA synthetase (NDP forming) [Energy production and conversion].	2.21318e-162
NZ_CP017143.1\|WP_005321271.1\|749514_749751_-\|50S-ribosomal-protein-L28	gnl\|CDD\|234736	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed.	3.10301e-34
NZ_CP017143.1\|WP_017411691.1\|749887_750562_-\|JAB-domain-containing-protein	gnl\|CDD\|178801	PRK00024, PRK00024, DNA repair protein RadC.	9.16629e-136
NZ_CP017143.1\|WP_005321651.1\|769622_770414_-\|glutamate-racemase	gnl\|CDD\|234851	PRK00865, PRK00865, glutamate racemase; Provisional.	5.6724e-109
NZ_CP017143.1\|WP_005321672.1\|775450_776575_+\|5-(carboxyamino)imidazole-ribonucleotide-synthase	gnl\|CDD\|235674	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed.	9.72148e-176
NZ_CP017143.1\|WP_005321654.1\|770530_772366_-\|TonB-dependent-receptor	gnl\|CDD\|236730	PRK10641, btuB, TonB-dependent vitamin B12 receptor BtuB.	2.85797e-178
NZ_CP017143.1\|WP_005321658.1\|772632_773535_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176120	cd08429, PBP2_NhaR, The C-terminal substrate binding domain of LysR-type transcriptional activator of the nhaA gene, encoding Na+/H+ antiporter, contains the type 2 periplasmic binding fold. NhaR is a positive regulator of the LysR family and is known to be an activator of the nhaA gene encoding a Na(+)/H(+) antiporter. In Escherichia coli, NhaA is the vital antiporter that protects against high sodium stress, and it is essential for growth in high sodium levels, while NhaB becomes essential only if NhaA is not available. The nhaA gene of nhaAR operon is induced by monovalent cations. The nhaR of the operon activates nhaAR, as well as the osmC transcription which is induced at elevated osmolarity. OsmC is transcribed from the two overlapping promoters (osmCp1 and osmP2) and that NhaR is shown to activate only the expression of osmCp1. NhaR also activates the transcription of the pgaABCD operon which is required for production of the biofilm adhesion, poly-beta-1,6-N-acetyl-d-glucosamine (PGA) .Thus, it is suggested that NhaR has an extended role in promoting bacterial survival. This substrate-binding domain has significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.59501e-81
NZ_CP017143.1\|WP_005321282.1\|750709_751912_+\|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC	gnl\|CDD\|235513	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated.	0
NZ_CP017143.1\|WP_005321648.1\|769112_769604_+\|RNA-binding-protein	gnl\|CDD\|240845	cd12399, RRM_HP0827_like, RNA recognition motif in Helicobacter pylori HP0827 protein and similar proteins. This subfamily corresponds to the RRM of H. pylori HP0827, a putative ssDNA-binding protein 12rnp2 precursor, containing one RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). The ssDNA binding may be important in activation of HP0827. .	9.92965e-31

>NZ_CP017143.1|WP_042468353.1|756747_758229_-|ketol-acid-reductoisomerase
MANYFNTLNLRQQLAQLGKCRFMQRAEFADGCDVLKGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKAAITEKRASWQKATDNGFAVGTYEELIPTADLVLNLTPDKQHSDVVKTVMPLMKQGAALGYSHGFNVVEEGQQIRADITVVMVAPKCPGTEVREEYKRGFGVPTLLAVHPENDPKGVGMAIAKAWASATGGDRAGVLESSFVAEVKSDLMGEQTILCGMLQAGSLLCYDKLVAEGTDPAYAGKLIQFGWETITEALKQGGISLMMDRLSNPAKLRAFELSEQLRTLMRPLFEKHMDDIIAGEFSRGMMADWAEDDAKLFGWREETGKSAFENAPAFAGKIAEQEYFDNGVVMVAMVKAGVELAFETMVASGIYEESAYYESLHELPLIANTVARKRLYEMNVVISDTAEYGNYLFANAAVPLLREHFMPTLKAGDLGASKAEGQNVDNLALLAANEATRNHPIEKIGQVLRGYMKDMKRIAVGG
>NZ_CP017143.1|WP_005321299.1|754941_756591_+|glucose-6-phosphate-isomerase
MKNINPTQTQAWQALEAHFAANKETRLKDLFAQDPKRFDKFSLTFGGDILVDYSKNLITEETLKLLVDLAKETDLRSAIDAMFNGEKINMTEGRSVLHVALRNRSDRPIECDGKDVMPEVNAVLAKMKGFCEKIISGEWKGYTGKAIQHVVNIGIGGSDLGPVMITEALRPYKNHLQMHFVSNVDGTHIAETLKEIDAETTLFLVASKTFTTQETMTNALTARDWFIKIAGDKAHVAKHFAALSTNGKAVAEFGIDTDNMFEFWDWVGGRYSSWSAIGMPIALSVGFDNFEALLQGAFEMDMHFATASYEQNVPVLLALIGLWYNNFHGAESEAILPYDQYMHRFPAYFQQGNMESNGKYVDRNGNPVDHQTGPIIWGEPGTNGQHAFYQLIHQGTKLIPCDFLAPAISHNPIGDHHPKLLANFFAQTEALAFGKSKEQVEAEFLAAGKTLEQVEDLVPFKVFEGNRPTNSILFKSLTPKTLGALIAMYEHKIFVQGAIWNIFSFDQWGVELGKQLANKILPELNTAEAVTSHDCSTNGLINTWKAWKA
>NZ_CP017143.1|WP_005321297.1|754330_754519_-|hypothetical-protein
MKHVLSLFALSLIATGLIGLLTLALTAAAPTLEIRVLAVIGAVLGGYALVQPLLNRVARRLL
>NZ_CP017143.1|WP_005321295.1|753332_754169_+|mechanosensitive-ion-channel
MEPEIITEAQTWLVNNQGLLIEYAVNIAAALITLLVGYITANLLSNGVIKVMNARKLDATVTHFVGSILKYTILVFVVIAAMGRVGVQTASFVAIIGAAGLAIGLALQGSLSNFAAGFLLIIFRPIKAGEFIEVAGTNGVVQSVQLFTTTLTSGDNKMVVVPNSAILNGTIVNYSRMDTRRVDMTFGIGYGSDLRKAKQLLERLVSEEPRILKEQAATIAVAALADSSVNIVVRPWVKTADYWGVWFDFHEKVKLTFDAEGIEIPFPQMVMHMQKPQA
>NZ_CP017143.1|WP_005321293.1|752585_753182_+|nucleoid-occlusion-factor-SlmA
MASSNQKQSRRDQILQALAHMLETSPGQRITTARLAAEVGVSEAALYRHFPSKARMFEGLIDFIEDSLLSRVNLIMAEEKDTMARCHHILQLLLVFAERNPGITRILNGDALLGEHDRLRDRISILFDKLETQIKQVLREKRLREGQGFQLDETMLANLLLAYTEGRISQFVRSEFKLKPTAGFEDQWLFIRSQLLQS
>NZ_CP017143.1|WP_005321291.1|752057_752516_+|dUTP-diphosphatase
MTTQIELKILDARIGTEYPLPAYATPGSAGMDLRALLDAPITLAPGDTILVPTGLAIHIQDPGLCATILPRSGLGHKHGIVLGNLVGLIDSDYQGQLMVSVWNRGNDSFTMQPGERIAQLVIMPVVQASFQLVDEFNQSERGEGGFGSSGRQ
>NZ_CP017143.1|WP_005321282.1|750709_751912_+|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC
MRLADKRILLGVSGGIAAYKSAELVRRLKDQGAEVRVVMTRSAKEFITPLTLQAVSGHPVADSLLDPAAEAGMGHIELAKWADLVLIAPASANLMARMAAGMADELLTTLCVATPAPVALAPAMNQQMYLNAATQANLKTLASRGILLWGPDSGSQACGDVGPGRMLDPLELVERCCQQLAAEPLLAGVRLLLTAGPTREALDPVRYISNHSSGKMGYAIARAAREAGAEVTLVSGPVALPAPSGVERVDVESAEQMHQAVMSRVGECDLFIGCAAVADYRPEQVASQKIKKTGDNDQMVLTLVKNPDIIAAVGALSDKPFTVGFAAETVDVEQYALDKLQRKRLDMIAANDVSRAGQGFNADDNALTVFWQGGQAPLPLADKLTLARHLIALIARHYRR
>NZ_CP017143.1|WP_017411691.1|749887_750562_-|JAB-domain-containing-protein
MSIKEWPEDERPREKLLRQGPATLSDAELLAIFLRTGVNGLSAVDLSRQLLQQFGSLRALLGADQGAFCHAHGLGPAKYAQLQAVLEMGKRHLAEQLQRGDALTSPQLTRDYLQAQLRDRPREVFALLLLDNQHRVIQFVELFYGTLDSASVWPREIVQIALKHNAAAVILAHNHPSGVAEPSRADRQITDRILAALALIDIRVLDHLVIGDGITVSFAERGWL
>NZ_CP017143.1|WP_005321271.1|749514_749751_-|50S-ribosomal-protein-L28
MSRVCQVTGKRPAVGNNRSHANNATKRRFLPNLHTHRFWVEGEKRFVSLRVSAKGMRIIDKRGVEVVLAELRASGVKV
>NZ_CP017143.1|WP_005307500.1|749335_749503_-|50S-ribosomal-protein-L33
MAKGIREKIRLNSSAGTGHFYTTTKNKRTMPEKMEIKKFDPVVRQHVIYKEGKIK
>NZ_CP017143.1|WP_042468352.1|759299_760172_-|transporter-substrate-binding-domain-containing-protein
MIRILLWCITLFAGSALAAESHIRAWNLLLEHPNPAVAGLLRLSLDLTVPEYGPYQLIASPPMEQGRAVKALQEGALVQIGVFAPDEERERSLLAVHIPLAKGLLGWRVCLIRLGDEGRFSGIGSLADWHSAGLTIGQHRSWPDTRLLKANGLKVTVGNLYEALFNMLSKRRFDCFLRSVIEIEDELKQHPELAIEPHLVFRYPLALLFFVSPQYPELAQRLELGLQRARQSGAFDQIFEKEFGSTIRRLKLDERVMLELHNPDLPARSRIMMADPSLIYAPVTATPSAQ
>NZ_CP017143.1|WP_005321308.1|760344_760536_+|hypothetical-protein
MMRHLIEINSSQLFEEYLQSLGVPQTLLDHEQDIYLQERPLAAVRQIQGKMKFYLRAGALTKQ
>NZ_CP017143.1|WP_042468351.1|760627_763198_+|bifunctional-acetate--CoA-ligase-family-protein/GNAT-family-N-acetyltransferase
MKPSGLDRLFKPHSIAVIGASTDPQKAGHVVIRHLLAGQFKGPILPVSPHNKAIAGVLAYPDIASLPLSPDLAIICTKRERVLSLIEALGKKGAGAAIILAADFSQEEREQLQRLSSQYDIRLLGPNSMGMLLPAQGINASFSPIAAKPGQVAFVSQSAAVSTTILDWAKQHELGFSAFISLGDHCDIDFGQLLDQLSRDGTTRAILLYMDKLHDARHFLSAARAASRNKPILVLKSGRHDPAKGLDNVYDAAIRRAGMLRVRDTHELFAAVETLSHSLTLKGERLAIISNGRGLANMAVDVLLERGGKLAIPPKDIGSDADITAYQQALDALLQGNEADAILLIHAPSLTARGAELARSLIDYLRQHPRARRFNILTNWAGEYSAQEGRKLFTEAGIPTYRTPESAVAAFMHMVEYRRNQKQLIETPASLQGDKLNVELCQQLIRQALERKQLTLDTHLVQPILQAAGLATLPTWIVSDAIEATLTAEQIGYPVAVKLRSPDIAHKSAVHGVMLNLRTSAEVAQAADAILDRVRQHDAGARIEGLLVQRMARRSGGLELRIRLQQDPVFGPVILLGESGAEPQEMVAALPPLNQALARYQVIGALKSRKIREQATPERLDIDALGQVLCQLSELLLAFPEIQELDLHPLQACGAEMVILDASLTLMPMTQQRCPLAIRPYPTELEEGAWLKDQSHVLLRPIRPEDEPAHKQFVLKVSDEDRYKRFFADVGELGHEELARMTQIDYDREMAFVAVGQDGAFSQQILGVVRAISNPDQSDAEFAILVRSDLKGLGLGKLMMEKIVRYARERGIGQLSGMTMPSNRGMINLAKRLGFKIDIQLEDGVVNMELPCAERA
>NZ_CP017143.1|WP_005321648.1|769112_769604_+|RNA-binding-protein
MNLSKFPVYVQAAILALVLALVGYLVAQALQFSLKAEVIFAVGLAIGGFIVPLFLKRTPAAAGELASGQETCTLYVGNLPYRANEIAVRELFAEQGQVISVRLMKDKATGKRRGFGFVEMPAADAAKAIAVLNDKEYQQRTLKVREANDKRDKDEREGSEVDA
>NZ_CP017143.1|WP_005321651.1|769622_770414_-|glutamate-racemase
MANILVFDSGMGGLTIYREIRRALPAHNYFYCFDNANFPYGELSESALIAACTRLVSHMVAEHVIDLVVIACNTASTIALPSLRAALTIPVVGVVPAIKPAAALTRNGCIGLLATPGTVSREYTHHLIAQFAPGKRVLLKGATELVIEAEHKLAGRPVNMALLQEVLTDWMEGEERPDTLVLGCTHFPLLNDEIRQLMPGCQLVDSGSAVARRVAHLLATVAEQPSQAVVQARAYCTRLDAQAQKLTAPLQAWGLSSLEEVQY
>NZ_CP017143.1|WP_005321654.1|770530_772366_-|TonB-dependent-receptor
MSKTLLVAALLPTAAFAQTTIAVNPTLVITANRVEQPISSVLAPVVVIDRAEIESRQVQSLPALLKTLPGVQITTLGGRGHMSSLFIRGTNSNHSLVLMNGRPIAAMVAGTPDLSQIPLGNIERIEYIRGPRAAVYGADAIGGVINLITKTSAKNGSETHLKGGVGSNGYGQGQVRTVQALGQQTDMNMMIGYERTDGFDVVANAQQPDRDGFDSLNGQFGLNHGFSDAWSGDFNAQGYDNQTEMDDAYQSADQSRVQAFQYDGGLKFQSETLTSRLEASYGENKLKSWLESKGESSAQPIHTGLTRFSWINSWSGVEGLNLTGGADWQQEQLKSDSRSSGLAFNAPDRDNTGLFAVGSYRWQALLWELSGRTDDNEQYGRHNTWSAASGLDIDDNHNVRLSYGTGFKAPTFLDLYYPGYENPDLKPEESKNLELGFAGRYTGWDWSLNLYRNKIQNLIACQSAFSTCKPDNTDAEIRGVEVALGLETGPIHHDLSFDYTRAEDKNDGDQQLLRRAKQKASWLTQVQLGPVDLSTELLYVGKRDDKNFSSFPAERVELGSYTLINLGASYGVTPQLTLGGRIDNLFDRDYAPAYGYASAGTEFKLTADYRL
>NZ_CP017143.1|WP_005321658.1|772632_773535_-|LysR-family-transcriptional-regulator
MLNYKQLYYFWHVARSGSVTRAAEQLHLTPQTISGQVAELELSLGVALFSREGRRLVLTAAGRQALEQAGAIFSLGAELEHTLRHASQELTMQVGIADSVPRTLAFELLAPAMALATPVRLICHEERAEQLFSELARHKLDMVLIDRPLPPDSGVRGYNHELGRSPLALFASPALAARARSGFPASLEGLPLLIPGEKSATHDRLLAWYRQQGIHPHLVGQFDDSTLMKSFGKAGMGIFPAPLAMRDEIERLYGVERIATLPEVTLSYYLVSAGRHLSHPGVQAVMEGARQRLVELEKQK
>NZ_CP017143.1|WP_005321666.1|774579_774882_+|hypothetical-protein
MQTETRTLLTVITEANLEPTLLRTLTREGLRGYTITDARGRGDHGERNASWSESGNIRLEAICSREQAERLLAHLQSRYYPDYAMIAFLQPVEIVRPEKF
>NZ_CP017143.1|WP_017412961.1|774944_775454_+|5-(carboxyamino)imidazole-ribonucleotide-mutase
MNTPPLIGLVMGSDSDWPVLQAAARILKEHGVPYEARVVSAHRTPDLLFEYAASARDRGLRAIIAGAGGAAHLPGMVAAKTTVPVLGVPIPSRHLKGMDSLLSIVQMPKGVPVATFAIGEAGAANAALFAVSLLSVTLDGDAPRYQQQLDDFRANERDRVLALQLEDPA
>NZ_CP017143.1|WP_005321672.1|775450_776575_+|5-(carboxyamino)imidazole-ribonucleotide-synthase
MILPPATLGMLGGGQLGRYFVMAAHRLGYKVVVLDPDPASIAGAAADHHIVAPYDDQTALHDLASRCAAISCEFENVPAATLALLEKQKPMRPAASAVRICQDRREEKAFLRGADIPVAPHLALLAGDPIPAQASALFPAILKTAREGYDGKGQWQVGNLDELASALTASGVPCVLEKRLPLEGEFALTLARSPSGAISALPLVQNWHSGGILDQTRSPANVPALEAEAKDIAERLIAVLDYVGVLTVEFFLVEGRLLVNEMAPRPHNSGHPSLDNAECSQFELQVRALCDLPLPEKAEVRPAILLNLLGDLWHGGTPDWEGVLALPGVHLHLYGKGEARPGRKMGHVTITGRDWPTVEDTSRHVRSLLGLPPP

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Crispr_ID: NZ_CP017143_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017143_3

793683-793778

Orphan

Consensus_repeat	Method
AAAAAACAAAAAACGGCCCATAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017143_3

>merge|NZ_CP017143|3|793683-793778|CRISPRCasFinder
AAAAAACAAAAAACGGCCCATAAAAAGAACCGTTATTGTGCCCGGCAAGAACCACCGCAACGGCAACTCGTAAAAAAACAAAAAACGGCCCATAAA

>NZ_CP017143|3|3|793683-793778|CRISPRCasFinder
AAAAAACAAAAAACGGCCCATAAA	AAGAACCGTTATTGTGCCCGGCAAGAACCACCGCAACGGCAACTCGTA
AAAAAACAAAAAACGGCCCATAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017143.1\|WP_005319433.1\|791687_792326_-\|leucine-efflux-protein-LeuE	unknown	unknown	gnl\|CDD\|236807
NZ_CP017143.1\|WP_085941387.1\|792434_793622_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224992
NZ_CP017143.1\|WP_017413110.1\|790959_791568_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274615
NZ_CP017143.1\|WP_005319451.1\|798617_799631_+\|tryptophan--tRNA-ligase	unknown	unknown	gnl\|CDD\|183400
NZ_CP017143.1\|WP_088814105.1\|799609_800584_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP017143.1\|WP_088814106.1\|789704_790634_-\|IS5-like-element-ISAs4-family-transposase	unknown	unknown	gnl\|CDD\|290455
NZ_CP017143.1\|WP_005319457.1\|801559_801721_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017143.1\|WP_088814108.1\|788353_789271_+\|IS5-like-element-ISAs4-family-transposase	unknown	unknown	gnl\|CDD\|290455
NZ_CP017143.1\|WP_076611341.1\|782539_783457_+\|IS5-like-element-ISAs4-family-transposase	unknown	unknown	gnl\|CDD\|290455
NZ_CP017143.1\|WP_005319436.1\|793821_794346_-\|non-heme-ferritin	unknown	unknown	gnl\|CDD\|224445
NZ_CP017143.1\|WP_005319446.1\|796426_797614_-\|trans-2-enoyl-CoA-reductase-family-protein	unknown	unknown	gnl\|CDD\|237460
NZ_CP017143.1\|WP_139403071.1\|786099_786696_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270423
NZ_CP017143.1\|WP_088814343.1\|784598_785735_-\|ISAs1-family-transposase	unknown	unknown	gnl\|CDD\|379382
NZ_CP017143.1\|WP_011898211.1\|800645_801575_+\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|183067
NZ_CP017143.1\|WP_088814342.1\|803066_803870_-\|sensor-domain-containing-diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NZ_CP017143.1\|WP_011898210.1\|801879_802173_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017143.1\|WP_005319449.1\|797991_798426_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|185073
NZ_CP017143.1\|WP_157738324.1\|783479_784292_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|270425
NZ_CP017143.1\|WP_042467165.1\|802215_803070_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|273359
NZ_CP017143.1\|WP_157738326.1\|784278_784545_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|270425

Protein	Function_ID	Function_description	E-value
NZ_CP017143.1\|WP_005319433.1\|791687_792326_-\|leucine-efflux-protein-LeuE	gnl\|CDD\|236807	PRK10958, PRK10958, leucine export protein LeuE; Provisional.	1.17719e-112
NZ_CP017143.1\|WP_085941387.1\|792434_793622_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224992	COG2081, COG2081, Predicted flavoproteins [General function prediction only].	0
NZ_CP017143.1\|WP_017413110.1\|790959_791568_-\|hypothetical-protein	gnl\|CDD\|274615	TIGR03505, FimV_core, FimV N-terminal domain. This region is found at, or about 200 amino acids from, the N-terminus of FimV from Pseudomonas aeruginosa, TspA of Neisseria meningitidis, and related proteins. Disruption of FimV blocks twitching motility from type IV pili; Semmler, et al. suggest a role for this family in peptidoglycan layer remodelling required by type IV fimbrial systems. Most but not all members of this protein family have a C-terminal region recognized by TIGR03504. In between is a highly variable, often repeat-filled region rich in the negatively charged amino acids Asp and Glu.	8.39467e-08
NZ_CP017143.1\|WP_005319451.1\|798617_799631_+\|tryptophan--tRNA-ligase	gnl\|CDD\|183400	PRK12282, PRK12282, tryptophanyl-tRNA synthetase II; Reviewed.	0
NZ_CP017143.1\|WP_088814105.1\|799609_800584_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	9.16867e-41
NZ_CP017143.1\|WP_088814106.1\|789704_790634_-\|IS5-like-element-ISAs4-family-transposase	gnl\|CDD\|290455	pfam13737, DDE_Tnp_1_5, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	2.34779e-48
NZ_CP017143.1\|WP_088814108.1\|788353_789271_+\|IS5-like-element-ISAs4-family-transposase	gnl\|CDD\|290455	pfam13737, DDE_Tnp_1_5, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	2.7915e-48
NZ_CP017143.1\|WP_076611341.1\|782539_783457_+\|IS5-like-element-ISAs4-family-transposase	gnl\|CDD\|290455	pfam13737, DDE_Tnp_1_5, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	2.87975e-48
NZ_CP017143.1\|WP_005319436.1\|793821_794346_-\|non-heme-ferritin	gnl\|CDD\|224445	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism].	1.62172e-84
NZ_CP017143.1\|WP_005319446.1\|796426_797614_-\|trans-2-enoyl-CoA-reductase-family-protein	gnl\|CDD\|237460	PRK13656, PRK13656, enoyl-[acyl-carrier-protein] reductase FabV.	0
NZ_CP017143.1\|WP_139403071.1\|786099_786696_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270423	cd13705, PBP2_BvgS_D1, The first of the two tandem periplasmic domains of sensor-kinase BvgS; the type 2 peripasmic-binding fold protein. This group contains the first domain of the periplasmic solute-binding domains of BvgS and related proteins. BvgS is composed of two periplasmic domains homologous to bacterial periplasmic-binding proteins (PBPs), a transmembrane region followed successively by a cytoplasmic PAS (Per/ARNT/SIM), a histidine-kinase (HK), a receiver and a histidine phosphotransfer (Hpt) domains. The sensor protein BvgS can autophosphorylate and phosphorylate the response regulator BvgA. The BvgAS phosphorelay controls the expression of virulence factors in response to certain environmental stimuli in Bordetella pertussis. Its close homologs, Escherichia coli EvgS and Klebsiella pneumoniae KvgS, appear to be involved in the transcriptional regulation of drug efflux pumps and in countering free radical stresses and sensing iron limiting conditions, respectively. The periplasmic sensor domain of BvgS belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.16839e-69
NZ_CP017143.1\|WP_088814343.1\|784598_785735_-\|ISAs1-family-transposase	gnl\|CDD\|379382	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated. This domain is frequently found N-terminal to the transposase, IS family DDE_Tnp_1, pfam01609 and its relatives.	7.38734e-32
NZ_CP017143.1\|WP_011898211.1\|800645_801575_+\|EamA-family-transporter	gnl\|CDD\|183067	PRK11272, PRK11272, putative DMT superfamily transporter inner membrane protein; Provisional.	1.5193e-23
NZ_CP017143.1\|WP_088814342.1\|803066_803870_-\|sensor-domain-containing-diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	2.07423e-20
NZ_CP017143.1\|WP_005319449.1\|797991_798426_+\|universal-stress-protein	gnl\|CDD\|185073	PRK15118, PRK15118, universal stress protein UspA.	4.07836e-43
NZ_CP017143.1\|WP_157738324.1\|783479_784292_-\|PAS-domain-containing-protein	gnl\|CDD\|270425	cd13707, PBP2_BvgS_D2, The second of the two tandem periplasmic domains of sensor-kinase BvgS; the type 2 peripasmic-binding fold protein. This group contains the second domain of the periplasmic solute-binding domains of BvgS and related proteins. BvgS is composed of two periplasmic domains homologous to bacterial periplasmic-binding proteins (PBPs), a transmembrane region followed successively by a cytoplasmic PAS (Per/ARNT/SIM), a Histidine-kinase (HK), a receiver and a Histidine phosphotransfer (Hpt) domains. The sensor protein BvgS can autophosphorylate and phosphorylate the response regulator BvgA. The BvgAS phosphorelay controls the expression of virulence factors in response to certain environmental stimuli in Bordetella pertussis. Its close homologs, Escherichia coli EvgS and Klebsiella pneumoniae KvgS, appear to be involved in the transcriptional regulation of drug efflux pumps and in countering free radical stresses and sensing iron limiting conditions, respectively. The periplasmic sensor domain of BvgS belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.68248e-18
NZ_CP017143.1\|WP_042467165.1\|802215_803070_+\|DMT-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	2.88266e-53
NZ_CP017143.1\|WP_157738326.1\|784278_784545_-\|hypothetical-protein	gnl\|CDD\|270425	cd13707, PBP2_BvgS_D2, The second of the two tandem periplasmic domains of sensor-kinase BvgS; the type 2 peripasmic-binding fold protein. This group contains the second domain of the periplasmic solute-binding domains of BvgS and related proteins. BvgS is composed of two periplasmic domains homologous to bacterial periplasmic-binding proteins (PBPs), a transmembrane region followed successively by a cytoplasmic PAS (Per/ARNT/SIM), a Histidine-kinase (HK), a receiver and a Histidine phosphotransfer (Hpt) domains. The sensor protein BvgS can autophosphorylate and phosphorylate the response regulator BvgA. The BvgAS phosphorelay controls the expression of virulence factors in response to certain environmental stimuli in Bordetella pertussis. Its close homologs, Escherichia coli EvgS and Klebsiella pneumoniae KvgS, appear to be involved in the transcriptional regulation of drug efflux pumps and in countering free radical stresses and sensing iron limiting conditions, respectively. The periplasmic sensor domain of BvgS belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	6.81277e-10

>NZ_CP017143.1|WP_085941387.1|792434_793622_-|NAD(P)/FAD-dependent-oxidoreductase
MMMQVDVVVIGAGAAGLMCAQQAGYRGRSVLVLDNAKKPGRKILISGGGRCNFTNHQAGPHAFLSGNPHFCKSALARYTQQDFIDLVDRHGVNYHEKTLGQLFCDESAKEIVDVLLTECDWAGVTLQFQTEILSVTRTEAGFVLGTSKGEVSCHSLVVATGGLSMPKLGATPYGFKLAEQFGLNVLPTRAGLVPFTLHQAEKEAFADLAGVSLPVAVTAEDGTRFKEAMLFTHRGLSGPVILQISSFWLAGEKIHINLLPELDIPMALKAWALAHPAQELKTVLGRELPKRFVDKLVELGQLNSKPMRQYNERELEAIATLLGDWQILPNGTEGYRTAEVTLGGVDTNELSSKTMEVRKVPGLYFIGEVVDVTGWLGGYNFQWAWSSGWVAGQYC
>NZ_CP017143.1|WP_005319433.1|791687_792326_-|leucine-efflux-protein-LeuE
MFESLGVVNVWTYLVGLFFIIIAPGPNSLYVLRTGASRGVGPGYRAALGVFVGDAILIFCAYLGVASLIRTTPLLFTLVRYLGAIYLLYLGVKILHANFVAKREGQESVVDPGERYFSKALTLSLTNPKAILFYVSFFVQFIDFNYAHPWLSYLVLAGMLEAMSFVYLTLLIFGGTLMARFFRQRQTAARLGNGLIGLFFMGFAARLATLSS
>NZ_CP017143.1|WP_017413110.1|790959_791568_-|hypothetical-protein
MVRQSLLLLVMLTTTPFSAATETFSFQSYQQGVLRMTLISPSLDGELLLRRGEQFEPLNNIVLERLFTLRVALPCQWLTDGSILYWSLPGRPLLSATIPAQSCVTAPSAPPPLPPVLIYGKQGKCLIDTGGNTLWRVATELAKRNRASIYQNVYAIFVTNKRAFAGEDIHRLRSRRLYCPDPALVDHIEPEHASRMFKETVR
>NZ_CP017143.1|WP_088814106.1|789704_790634_-|IS5-like-element-ISAs4-family-transposase
MGKALHPITNWPQYNRSLINRGSLTFWVDAEAMDNWFHQDHHGKRGRSQLYTDQSICTFLMLKGIFSLTLRATQGLLDSLFELMNVPLCAPDYSCVSKRARTVKVAYRQPPKGRITDLVIDSTGLKVFGEGEWKVRKHGAEKRRVWRKLHLAVDPVTHDIVAAEVSLENVHDAEVLPTLLNPLRRKLGRVYADGAYDSKASHRLIARKGATACIPPRKNAGLWKKGHPRNEAVQVMRKEGLAHWKKISGYHRRSLAETAMFRFKQLMAGQITLRKYNGQVGEVMAYVSAINKLNTLGLQGEIVRLQLVK
>NZ_CP017143.1|WP_088814108.1|788353_789271_+|IS5-like-element-ISAs4-family-transposase
MGKALHPITNWPQYNRSLINRGSLTFWVDAEAMDNWFHQDHHGKRGRSQLYTDQSICTFLMLKGIFSLTLRATQGLLDSLFELMNVPLCAPDYSCVSKRARTVKVAYRQPPKGRITDLVIDSTGLKVFGEGEWKVRKHGAEKRRVWRKLHLAVDPVTHDIVAAEVSLENVHDAEVLPTLLNPLRRKLGRVYADGAYDSKASHRLIARKGATACIPPRKNAGLWKKGHPRNEAMQVMRKEGLAHWKKISGYHRRSLAETAMFRFKQLMAGQITLRKYNGQVGEVMAYVSAINKLNTLGLPVRKPRV
>NZ_CP017143.1|WP_139403071.1|786099_786696_-|transporter-substrate-binding-domain-containing-protein
MVKQEKKLILAVPIPDNPPMDITQRAKIYEGVTADIIGILSGVLKVDIVAKLYPSRDVAIEAVRNGEADFIGSSNSYEAGERLDLTKPYIMDEPAIYKRFGIGDEEIKRVAVAESYLPFSELLRYLPGVKVDLYSSRYAAVASVAYGKADAVLIDMISGNFIVNKFHQDSIQLVRPIYADTSGFSFGIRQGNEVFKKY
>NZ_CP017143.1|WP_088814343.1|784598_785735_-|ISAs1-family-transposase
MSIDAVFTQFFADIHDQRQNEKIHYAFYDVLFLTVCAVIGGAEGWEEIEDFGEIHLPWFQSKGLFKNGIPVHDTIARIISRIKPAQFQAAFIRWTNAINKQTDGALVAIDGKTLRRSYDREDRTSTIHMVSAYAAANKMVLGQLKTAAKSNEITAIPELLTLLDIKGCLISIDAMGCQTEIAKTIVEQQGDYLLAVKGNQPTLFDAVRKALAPQLTQPLNQERAAIEQQHGRIEAREYHVLEAGVLASQFPDWPGLQTIGVAVSYRTENKKKTTLDMRYFISSKLLERDEFAKAVRGHWAIENSLHWVLDVTMGEDACPIYRGDAAEILACIRHMALNMLRGETSRKASIRRKQKIAGMSSEYLEAVLTAGIQKLTAS
>NZ_CP017143.1|WP_157738326.1|784278_784545_-|hypothetical-protein
MSTTLEQIAMVESGNADLMIMTPNVERLEKFIFTRAFALDPLVYITHEDNKGVDPEALLRLSRVAWVNGYIASIEARRKLKARDDVFF
>NZ_CP017143.1|WP_157738324.1|783479_784292_-|PAS-domain-containing-protein
MFFFDRIDDALACVARKRCDVIVLPLRGAKFFINSQFSDSLHIAGELFNSKPIGASFAALPSQSELVAVLDKVLAHIPPDELEGLATMWRVNARNENITWQGVIREYGVIFLVMIVIFLGGLFWGLLLRREVKQRQAAEVALGTQLKFVEELVESTPHPIYARGRDGRIILCNDSYANFLNVRKSDLMGSTLSDIEDICPAIKLLNDIFLKTLNDGLPRDGDYRLTLLHGEIDIYHWLQVYRDLSGEIQGVVGGWIDISEALLPKSASKS
>NZ_CP017143.1|WP_076611341.1|782539_783457_+|IS5-like-element-ISAs4-family-transposase
MGKALHPITNWPQYNRSLINRGSLTFWVDAEAMDNWFHQDHHGKRGRSQLYTDQSICTFLMLKGIFSLTLRATQGLLDSLFELMNVPLCAPDYSCVSKRARTVKVAYRQPPKGRITDLVIDSTGLKVFGEGEWKVRKHGAEKRRVWRKLHLAVDPVTHDIVAAEVSLENVHDAEVLPTLLNPLRRKLGRVYADGAYDSKASHRLIARKGATACIPPRKNAGLWKKGHPRNEAVQVMRKEGLAHWKKISGYHRRSLAETAMFRFKQLMAGQITLRKYNGQVGEVMAYVSAINKLNTLGLPVRKPRV
>NZ_CP017143.1|WP_005319436.1|793821_794346_-|non-heme-ferritin
MLAKAMIEKLNEQINLEFYSSNLYLQMSAWCEDKGFEGAATFLRQHAVEERQHMERLFTYVSETGAMPMLGAIDAPPHEFKSLGDIFRNTLEHEYHITQCINGLAHVAFTTQDYSTFNFLQWYVAEQHEEEKLFKSIVDRLSLVGEDGKGLYFIDKELAELAKGAPASVMDGNA
>NZ_CP017143.1|WP_005319446.1|796426_797614_-|trans-2-enoyl-CoA-reductase-family-protein
MIIHPQIQGCVARNCHPIGCRAAVLQQISSVKAAGSFNGPKRVLVLGASSGFGLASRIALTFGAGADTVGVSFERGPSDKGLGSAGWYNNIWFRQAAEQEGRVAVNLIGDAFSDAMRQQAIDSIRQQLGQVDLVIYSLASGIRVLPDGRQVRSALKTTGQPFSGWGLDLEQDKLVQQSLAPATPEEIRDTVTVMGGEDWQLWMLALQQADCLAPGARTVAYSYIGPESTYPLYRDGTIGYAKEHLHATAEAINLQLAELGGHAWVSVCKALVTKASAYIPVLPVYLGLLMGVMKERGVHEGCIEQMQRLFASKMYGPQGVVADGNRLIRMDDHELDPAIQAAVSTLWSKVTPDNFHTLGDFAGLRQDFMQLNGFELPGVDYGAPVDVASLTELVP
>NZ_CP017143.1|WP_005319449.1|797991_798426_+|universal-stress-protein
MNGTYYQHILAAIDLSEDNRKVIEKAVDRARSNGAKLSVIHVDVDLKDLYTEMIDIDIDNVQDQVIAEAKEKLETFLASVDYPIEKKLVICGDLSERVNQAVKDYQIDLLVCGHRQSFWSLLTSSARQLMNTVPCDLLVVPLQK
>NZ_CP017143.1|WP_005319451.1|798617_799631_+|tryptophan--tRNA-ligase
MHNPIILTGDRPTGKLHIGHYVGSLRQRVEAQHHYRQFVMIADLQALTDNGHNPAKVTDNVLEVMADYLAAGLDPAKTTFCLQSALPALAELTTYYLNLVSVARLERNPTVKAEIQQKGFERSLPAGFLIYPVSQAADITAFRATHVPVGEDQLPMLEQTNEIVRRFNALVGKEVLTECQPILSDTGRLPGIDGKAKMSKSLGNTIELGMSAEEVKQAVFAMYTDPNHLKVSDPGQVEGNTVFAYLDAFHPDKMLVAEMKVHYQRGGLGDMRCKQVLNDCLQTLLAPMRARRQAALADKRQLLQLLQQGTLQARALTDEVLAEVKSAMGLDYFAGLD
>NZ_CP017143.1|WP_088814105.1|799609_800584_-|LysR-family-transcriptional-regulator
MELPLSRLDLNLLTVFDMLMQERNVTRAAERLHLSQSTVSHALGRLRQALDDPLFVMSRREMMPTERAKTLAGPVRQALAMLEQGLRQAEGFDPASARRIFRIATPGSVEHGLVPALVEQLHRQAPHCRLEVCELADSDYERELEKGELDLVIGFADANHFSPRLWREPWFNNPLVCLSPLGSELPEVLGPAELVSRPHIHTSSWGHSQAMVNLWLARFGVERELGVRLPSFMAVPPLMATGRYLVVVPEMIGRHFCRYYPLRLHQLNPEIPIVYLMAGHPLTAHDQAIGWFKGLLHRLAFERYGADALGSVAQRSADQSSPAK
>NZ_CP017143.1|WP_011898211.1|800645_801575_+|EamA-family-transporter
MRWRITSEINMRSYLLLLAIGLLWGSQFIFMHQAVTELPPIMVAAGRALCGSLTLGLLCLFMRLKSEHTPWRTYMLIALLDATLPFIMVAWGQQYVDSAIAAVVMGCIPFVTILMAPLLLSGEKITKGGLVSVIIGFIGVLVLFWPKLANGMNAGLLGAVAILFGASCFAIGLLMIKRFAKDHPVVVARNILISSAIQLMLAAPFLTDLSALTMPSQHAISAVVVLGVFCTGLVYFLYMALIQKAGPTFASFSNYLVPLFGVMLGAMFLGEQIQSTTGVALALILGSVALNQWAQQRRAQREAALCQAS
>NZ_CP017143.1|WP_005319457.1|801559_801721_+|hypothetical-protein
MSGILTTLCGGLVLIAGWQYRHRLAGLLGLLMVLLPWFFDSKLQAMLSYALSV
>NZ_CP017143.1|WP_011898210.1|801879_802173_-|hypothetical-protein
MAEMEAVIQRLWHQLPQIRAFAFEASNGAGSATDWCGRGEGDVEVTDHQGGWLTAEPHLCGQDHYSAELTESDSGFLLSWEITGPRKNERLSYRYLR
>NZ_CP017143.1|WP_042467165.1|802215_803070_+|DMT-family-transporter
MNYLIGVTLLWSFSFSLIGVYLAGQVDAYFSVLTRIVLASLVFLPFLRRRWLRPDFALKLMGLGAIQLGIMYLFYYQSFLLLTVPEVLVFTIFTPLYVTLLHDLLERRFKPVYLWGALLAVLGAAVIRFDGLTESYVLGFLVVQGANLSFAMGQVGYKVLLAREAQQPPQQAVFGCFYLGALAVALPAWWLLGKPQYPTSGLQWGILLWLGVGASGLGYFLWNKGATKVSSGVLAIMNNALIPAGLLVNLLIWGKDTNLARLAIGGLLMLASLWICQRASVSKH
>NZ_CP017143.1|WP_088814342.1|803066_803870_-|sensor-domain-containing-diguanylate-cyclase
MADAMALLEAGLWSWSPQQGVQRDLSCLRLLGLNETGLDDLGWLERVHPDDVAVLQEALAACQSGRVPQIRLEYRILHHDGHYVRLEERARRDVHGQVLGVVRLLESQPVAEERHGTDPLTGLESRSHFEQLLDERLATESGSFSLLQFTVDHSAKIQQLFGEAACDAMLAKLARMVRHELRREDPFARWDQDGFILMLSQTDRLSGLEIAERLCLEIADASLLPQRPVTVSVGLVQSQAGEHIDHLLARLATCHGQARREHNAVVG

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Crispr_ID: NZ_CP017143_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017143_4

844063-844149

Orphan

Consensus_repeat	Method
AGGTTTCGGATCAGGTTGGAATA	CRISPRCasFinder

1 spacers

WYL

The CRISPR arrays of NZ_CP017143_4

>merge|NZ_CP017143|4|844063-844149|CRISPRCasFinder
AGGTTTCGGATCAGGTTGGAATATTCGCGCTGCATCTGTCCACTCACCGTCATATCAGGAAGAGAGGGTTCGGATCAGGTTGGAATA

>NZ_CP017143|4|4|844063-844149|CRISPRCasFinder
AGGTTTCGGATCAGGTTGGAATA	TTCGCGCTGCATCTGTCCACTCACCGTCATATCAGGAAGAG
AGGGTTCGGATCAGGTTGGAATA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017143.1\|WP_042467187.1\|834381_834807_+\|type-III-secretion-protein	unknown	unknown	gnl\|CDD\|341102
NZ_CP017143.1\|WP_017411496.1\|838581_839346_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP017143.1\|WP_042467190.1\|836002_836440_-\|Hsp20-family-protein	unknown	unknown	gnl\|CDD\|182691
NZ_CP017143.1\|WP_005319562.1\|852153_853353_-\|histidine-decarboxylase	unknown	unknown	gnl\|CDD\|235068
NZ_CP017143.1\|WP_005319564.1\|853492_853744_-\|isochorismatase	unknown	unknown	gnl\|CDD\|225967
NZ_CP017143.1\|WP_005319532.1\|836533_836947_-\|Hsp20-family-protein	unknown	unknown	gnl\|CDD\|182691
NZ_CP017143.1\|WP_017411499.1\|848956_850603_+\|membrane-protein-insertase-YidC	unknown	unknown	gnl\|CDD\|234942
NZ_CP017143.1\|WP_096071847.1\|847238_847973_+\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP017143.1\|WP_011898202.1\|841824_842928_-\|DNA-replication/repair-protein-RecF	unknown	unknown	gnl\|CDD\|234608
NZ_CP017143.1\|WP_011899267.1\|846557_847226_+\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP017143.1\|WP_005319547.1\|845798_846557_+\|amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270427
NZ_CP017143.1\|WP_096071846.1\|837225_837930_+\|YafY-family-transcriptional-regulator	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
NZ_CP017143.1\|WP_005319556.1\|848702_848951_+\|membrane-protein-insertion-efficiency-factor-YidD	unknown	unknown	gnl\|CDD\|376620
NZ_CP017143.1\|WP_005319542.1\|842930_844034_-\|DNA-polymerase-III-subunit-beta	unknown	unknown	gnl\|CDD\|235541
NZ_CP017143.1\|WP_042467186.1\|833036_834269_+\|valine--pyruvate-transaminase	unknown	unknown	gnl\|CDD\|236517
NZ_CP017143.1\|WP_005307156.1\|848242_848377_+\|50S-ribosomal-protein-L34	unknown	unknown	gnl\|CDD\|366117
NZ_CP017143.1\|WP_005319540.1\|839413_841828_-\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B	unknown	unknown	gnl\|CDD\|237860
NZ_CP017143.1\|WP_005319560.1\|850690_852052_+\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE	unknown	unknown	gnl\|CDD\|235392
NZ_CP017143.1\|WP_005319554.1\|848376_848736_+\|ribonuclease-P-protein-component	unknown	unknown	gnl\|CDD\|179327
NZ_CP017143.1\|WP_034281998.1\|838000_838378_+\|drug:proton-antiporter	unknown	unknown	gnl\|CDD\|319922

Protein	Function_ID	Function_description	E-value
NZ_CP017143.1\|WP_042467187.1\|834381_834807_+\|type-III-secretion-protein	gnl\|CDD\|341102	cd17019, T3SC_IA_ShcA-like, Class IA type III secretion system chaperone protein, similar to Pseudomonas syringae chaperone protein ShcA. This family includes type III secretion system (T3SS) chaperone proteins similar to Pseudomonas syringae ShcA and similar proteins. In P. syringae, which is a plant pathogen that can infect a wide range of species, the T3SS allows injection of the effector HopA1 (previously known as HopPsyA or HrmA), a protein that has unknown functions in the host cell but possesses close homologs that trigger the plant hypersensitive response in resistant strains. Chaperone ShcA binding to Hop1A shows that interactions in animal pathogens are preserved in the Gram-negative pathogens of plants.	5.46284e-38
NZ_CP017143.1\|WP_017411496.1\|838581_839346_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	6.06486e-06
NZ_CP017143.1\|WP_042467190.1\|836002_836440_-\|Hsp20-family-protein	gnl\|CDD\|182691	PRK10743, PRK10743, heat shock chaperone IbpA.	4.0303e-46
NZ_CP017143.1\|WP_005319562.1\|852153_853353_-\|histidine-decarboxylase	gnl\|CDD\|235068	PRK02769, PRK02769, histidine decarboxylase; Provisional.	0
NZ_CP017143.1\|WP_005319564.1\|853492_853744_-\|isochorismatase	gnl\|CDD\|225967	COG3433, COG3433, Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism].	4.72789e-16
NZ_CP017143.1\|WP_005319532.1\|836533_836947_-\|Hsp20-family-protein	gnl\|CDD\|182691	PRK10743, PRK10743, heat shock chaperone IbpA.	7.51216e-68
NZ_CP017143.1\|WP_017411499.1\|848956_850603_+\|membrane-protein-insertase-YidC	gnl\|CDD\|234942	PRK01318, PRK01318, membrane protein insertase; Provisional.	0
NZ_CP017143.1\|WP_096071847.1\|847238_847973_+\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	9.27918e-132
NZ_CP017143.1\|WP_011898202.1\|841824_842928_-\|DNA-replication/repair-protein-RecF	gnl\|CDD\|234608	PRK00064, recF, recombination protein F; Reviewed.	2.94816e-139
NZ_CP017143.1\|WP_011899267.1\|846557_847226_+\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	7.24137e-75
NZ_CP017143.1\|WP_005319547.1\|845798_846557_+\|amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270427	cd13709, PBP2_YxeM, Substrate binding domain of an ABC transporter YxeMNO; the type 2 periplasmic binding protein fold. This group contains cystine-binding domain (YxeM) of a periplasmic receptor-dependent ATP-binding cassette transporter and its closely related proteins. Cystine is an oxidized dimeric form of cysteine that is required for optimal bacterial growth. In Bacillus subtilis, three ABC transporters, TcyJKLMN (YtmJKLMN), TcyABC (YckKJI), and YxeMNO are involved in uptake of cystine. Likewise, three uptake systems were identified in Salmonella enterica serovar Typhimurium, while in Escherichia coli, two transport systems seem to be involved in cystine uptake. Moreover, L-cystine limitation was shown to prevent virulence of Neisseria gonorrhoeae; thus, its L-cystine solute receptor (Ngo0372) may be suited as target for an antimicrobial vaccine. The cystine receptor belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.03493e-124
NZ_CP017143.1\|WP_096071846.1\|837225_837930_+\|YafY-family-transcriptional-regulator	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	1.94635e-64
NZ_CP017143.1\|WP_005319556.1\|848702_848951_+\|membrane-protein-insertion-efficiency-factor-YidD	gnl\|CDD\|376620	pfam01809, Haemolytic, Haemolytic domain. This domain has haemolytic activity. It is found in short (73-103 amino acid) proteins and contains three conserved cysteine residues.	5.96059e-39
NZ_CP017143.1\|WP_005319542.1\|842930_844034_-\|DNA-polymerase-III-subunit-beta	gnl\|CDD\|235541	PRK05643, PRK05643, DNA polymerase III subunit beta; Validated.	0
NZ_CP017143.1\|WP_042467186.1\|833036_834269_+\|valine--pyruvate-transaminase	gnl\|CDD\|236517	PRK09440, avtA, valine--pyruvate transaminase; Provisional.	0
NZ_CP017143.1\|WP_005307156.1\|848242_848377_+\|50S-ribosomal-protein-L34	gnl\|CDD\|366117	pfam00468, Ribosomal_L34, Ribosomal protein L34.	1.68921e-12
NZ_CP017143.1\|WP_005319540.1\|839413_841828_-\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B	gnl\|CDD\|237860	PRK14939, gyrB, DNA gyrase subunit B; Provisional.	0
NZ_CP017143.1\|WP_005319560.1\|850690_852052_+\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE	gnl\|CDD\|235392	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE.	0
NZ_CP017143.1\|WP_005319554.1\|848376_848736_+\|ribonuclease-P-protein-component	gnl\|CDD\|179327	PRK01732, rnpA, ribonuclease P; Reviewed.	6.91746e-65
NZ_CP017143.1\|WP_034281998.1\|838000_838378_+\|drug:proton-antiporter	gnl\|CDD\|319922	cd07261, EhpR_like, phenazine resistance protein, EhpR. Phenazine resistance protein (EhpR) in Enterobacter agglomerans confers resistance by binding D-alanyl-griseoluteic acid and acting as a chaperone involved in exporting the antibiotic rather than by altering it chemically. EhpR is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.	1.54675e-56

>NZ_CP017143.1|WP_005319542.1|842930_844034_-|DNA-polymerase-III-subunit-beta
MQLEISREALLRPLQLVSGALGGRPTLPILGNVLLDVSQGLLSLTGTDLEVEMIGQVYLNNESQDGRTTVPARKLLDICRGLPEGADIRLNTEGERLIIRSGRSRFNLSTLPASEYPNIEDWESVLEFDIGQLELKKLIDATQFSMASQDVRYYLNGMLFESEGHGLRTVATDGHRLATCRREVVEESLPDHQVILPRKGVLELVRLLEAEDKPVRLQIGRSNLRAALDGFIFTSKLVDGRFPDWRRVIPRNSDKALIAGREDLRQAFARAAILSNEKFRGVRLNLQENLLRITANNPEQEEAEELLDVQYEASEMEIGFNVSYVLDVLNTLKCDQIRISLSDSISSAIIEDFDHQDAQYVVMPMRI
>NZ_CP017143.1|WP_011898202.1|841824_842928_-|DNA-replication/repair-protein-RecF
MSLVKLQLSDFRNIQQASLKLSPGLNILVGCNGSGKTSVLEAIHYLGLGRSFRTHLTGRVIRQGERAFTLFAQCELEGRQVPIGLAKDKSGETQLKIAGAQAQRLADLAELLPVQLIHPDGFNLLTGGPQARRAWLDWGVFHQEPTFFSLWGRVRRLLKQRNALLRQSTQYRQLAFWDQELVRLGGELAEFRASYCQAITPLIKEMTADFLPEFDISLGFYRGWEKDTPLGDLLEAGFERDRTLGYTGVGPQKADVRLKANGVPAQDILSRGQLKLLVCAMRLAQGLYLNQHSSRGCIFLIDDFASELDVDKRRLLATRLKQCGSQVFITAIDTGQLADMMDANDCKLFHVEQGKISETLEKAESKL
>NZ_CP017143.1|WP_005319540.1|839413_841828_-|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B
MSENTYDSSNIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGYCSDILVKIHSDGSVSVRDNGRGIPVDMHEEEGRSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTLYHYEILAKRLRELSFLNSGVSIRLQDERDGREVHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGAHIRTLLLTFFYRQMPEIIERGYIYIAQPPLYKVKKGKQEQYLKDEDALLQYQTAMALDGATLHVNESAPPIGGEALERLVNQHRAVSHLITRMSRRAPDAVLTQLIYQPELNETLLASESDLLAWCQGMEAVLNESNHGIQYQIQVRRDEERSLFVPHAVVRQHGVDREYAISYDFLQSSEYRQLVSLGKEIANLIEDGGFIKRGEKVKPIANFVEAVDWLMGEGKRGIYIQRYKGLGEMNPDQLWETTMDPEARRMLRVTIDDAVGADQLFSTLMGDAVEPRRDFIETNALRVANLDV
>NZ_CP017143.1|WP_017411496.1|838581_839346_+|GNAT-family-N-acetyltransferase
MTSRHNSLRLYQPTNSTPDELTEQQLALFTLLQLREQEFGFNPNVIVHYPEAGFLGSPIGYLNQLIGEQLQQGYFINQVVILTTYQVLSSPLMQAGYQHEAVHMPAGPDHTAIFRWQCGTHPAGKTLYVEVVNEQDPKIRPTFVLMLRDEHGKLLGGMSGSIWTKEEHRYAYIGTVVVQPGQPAGTGTRLANTVLEYLSLQKVCEINLGTQTAEPFYTRLGFRAIHHIVPALRHRTTKDGTELPHNLVIMSKLL
>NZ_CP017143.1|WP_034281998.1|838000_838378_+|drug:proton-antiporter
MLVPQFTILYVANPARSALFYRELFGHPPVEESPTFAMFVFESGARLALWSSATVEPAVTQSAGAMELAFPLPNEASVDTGLAEWRARGLTILQQPTKMEFGYTGMALDPDGHRLRLYCPGAEPV
>NZ_CP017143.1|WP_096071846.1|837225_837930_+|YafY-family-transcriptional-regulator
MSRSERLLALLQLLRGHRYAITGTELASQLGISMRTLYRDIATLQAQGAHIEGEPGIGYVLRPGFMLPPLMFSEDELEALVLGSRWVVAHCDEALSASASSALAKIEAVLPAEYRQQLQANALLIGTSRSDSPVDEAPLRSAIRQQRKVTLSYRDLKEELSERTVWPFALGYFEQVRVLVAWCELRQGFRHFRVDRIAWMQLEDNRYPKNRESLLKEWRATQQIPQPKFIADRN
>NZ_CP017143.1|WP_005319532.1|836533_836947_-|Hsp20-family-protein
MRSIDFSPLYRSAIGFDRLANLIESAASNGNAGYPPYNIEQLSDNDYRISMAVAGFTQEELELSFQENLLTVKGSKQAESDRNYLYQGIAERGFERRFQLADYVRVKGADLKNGLLHIELMREVPEAMKPRKIEING
>NZ_CP017143.1|WP_042467190.1|836002_836440_-|Hsp20-family-protein
MRNLDFSHLYSNAVGFERMARELEGLFEQKAAAYPPYNIEKREHDSYRITLAVAGFEREELELETENGTLKVKGCKAAAGERQFLHQGIAERDFELAFKLSQHVEVQGAKLEHGLLTIDLARELPEALKPRAIEIGKPDQLALPG
>NZ_CP017143.1|WP_042467187.1|834381_834807_+|type-III-secretion-protein
MDIGEILLAELATQLQLSSLTIDENGNCPLLIDSELPLILHLEPCALLIMAPLVLPTFSFDNAELQRRMLMAALNPAFDKEPGIGWHPEFQLIAYRRHMLDGMTGSQLAQHLGDFIEWMRKFVTSLPRSTPATTRGIHDRV
>NZ_CP017143.1|WP_042467186.1|833036_834269_+|valine--pyruvate-transaminase
MEFSLFGEKFTRHAGITQLMDDLNQGLTNPDAIMLGGGNPAPIPAMLERFQTEARNLLDNGELVKAMANYDGPQGKDRFTKALATLLSKELGWNITSRNIALTNGSQNAFFYLFNLLAGEFADGRKKKVLFPLAPEYIGYADSALADDYFVAYKPTIEKLPDGQFKYHVDFESLQVGDDIGVICVSRPTNPTGNVLTDEEIEHLDQIARDKGIPLLIDNAYGVPFPGIIFSEAKPFWNANTILCMSLSKLGLPGTRCGIVIADEKIIQAITNLSGIISLGPAITIPMIESGEIIALSEQVVKPFYKQKADFAVQLLRDAIPDPRFHIHKPEGALFLWLWFEGLPIHSQELYERLKAKNLLIVPGHYFFPGIDDPEWRHSQECIRLNYSQSEELVRRGIAILADEINALYV
>NZ_CP017143.1|WP_005319547.1|845798_846557_+|amino-acid-ABC-transporter-substrate-binding-protein
MTSSIKLVSGAAILLAALSGQAIAQETIKVGMSGKYFPFTFVKQDKLQGFEVDMWNQIGERTGYKVEFVTASFSGLFGMLETGRVDTISNQITITDERKAKYAFSQPYVYDGAQIVVRKGNSTIHGIKDLEGKTVAVNLGSNFEELLRKNDPNKKIDIRTYDSSFEQDVALGRIDAFVMDRVSTAQLIKESKLPLQQAGAPFETIENALPFLKTPEKQALLKKVDDALTAMRKDGALRQISEKWFAADITDK
>NZ_CP017143.1|WP_011899267.1|846557_847226_+|amino-acid-ABC-transporter-permease
MMEFDLEYTLGLFPILLKYLGTTMEMALWGFVLALVLSLTLAIVRVFRIPVIHWLAMLYISFFRGTPLLVQLFLLYYGLPQLFPVFVGMDAFTAAIVGLTLHFAAYMAESIRAAILGIHKSQMEAALSIGMSRYQAMRRIILPQAARIATPSLMNYFIDMIKSTSLAFTLGVAEIMGKAQMEASSSFKFFESFMAVALVYWVVVIIFTRLQHLLEVHLNRAY
>NZ_CP017143.1|WP_096071847.1|847238_847973_+|amino-acid-ABC-transporter-ATP-binding-protein
MIKLTGLSKAFHGNKVLNSIDLEVRKGEIVVIIGPSGTGKSTLLRCLNLLETPDAGTLAIDDLQLDLANASEQQAIELRKRASFVFQNYALFANKTALDNIAEGLITVWKQPKAEARATALGILKDIGLADKQDAYPASLSGGQQQRVGIGCAMAAHSKVILFDEPTSALDPEWVDEVLGLMKELARQHQTMVVVTHEIEFARDVADRVIFMEGGRIVEQGPPDQILVDPKDPRTREFLRKVLK
>NZ_CP017143.1|WP_005307156.1|848242_848377_+|50S-ribosomal-protein-L34
MKRTFQPSNLKRKRSHGFRARMATANGRKVLAARRAKGRARLVV
>NZ_CP017143.1|WP_005319554.1|848376_848736_+|ribonuclease-P-protein-component
MPTPHTFSRELRLLTPEHFKRVFAEPVRAASPQITLLACPNTLEHPRLGLAVPKKALKRAVWRNRVKRVVRESFRLNQASLPAIDIVVIAKGGVKEMDNEELFKLLEKLWRTLSRRCNG
>NZ_CP017143.1|WP_005319556.1|848702_848951_+|membrane-protein-insertion-efficiency-factor-YidD
MAHSVTPLQWVAVKLIRLYQLIISPLLGQRCRFTPTCSQFAIEAIRLHGFIKGVWLASKRLLKCHPLSEGGYDPVPQPKRRN
>NZ_CP017143.1|WP_017411499.1|848956_850603_+|membrane-protein-insertase-YidC
MESQRNLILIGLLFVSFLLWQQWESDKAPKPAPTTVAQTEHFVPEAGQTGDIPQVSEQANANAARKLITVSSDVLKLTLDTQGGDIVSAELLAHKLEEGKDQSFVLLTSQPDRLYVAQSGLVGRDGPDSQAQGRPTYEAAQTSYQLADGQDQVVVPMTWTDSKGVVFTKEFVLKRGDYAIGVDYKIDNKSAEPVQVQFYGQLKQTVTTPKDQEGHAMVASAYRGGAFSSEESRYKKYTFDEMKDADLNKTTKGGWVAMLQHYFVSAWAPNADDTNSFYSRVIPGKDQAIIGYKAPLVDVAAGQQAEVTSKLWVGPKLQDQMAKVANHLDLTVDYGWLWFIAQPLHWLLTVFQGFVHNWGVAIIMLTLLVRGIMFPLTKAQYTSMAKMRMLQPKLAALKERFGDDRQKMSQGMMELYKKEKVNPLGGCLPILVQMPIFIALYWALMESVELRHAPFALWITDLSVKDPFFVLPILMGASMWYLQKMSPTTITDPMQQKVMQFMPIIFTFMFLWFPAGLTLYWLVSNVISITQQTIIYRQLEKKGLHTRT
>NZ_CP017143.1|WP_005319560.1|850690_852052_+|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE
MTTDTIVAQATAPGRGGVGIVRVSGPAAEQVAEIVLGKLPRVRYAEYLPFKDEQGQPLDQGIALLFKAPNSFTGEDVLELQGHGGPVIMDMLVRRILQIKGLRPARPGEFSERAFMNDKLDLAQAEAIADLIEASSEQAARSAMHSLQGQFSSKIQQLVESLIRLRIYVEAAIDFPDEEIDFLSDGKVAGDLYAIMAELDGVRSEAKQGALLREGMKVVIAGRPNAGKSSLLNALAGRESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTLDKVEQIGIERAWAEIEQADRVLFMVDGTTTDAIDPREIWPEFVDRLPKDIGLTVVRNKADLTGEDLAPSQELGHAVYRISAKTELGLPALREHLKACMGFQGNTEGGFMARRRHLDALERAAERLLVAKDQLEIYVAGELVAEELRLAQESLSEITGEFSSDDLLGRIFSSFCIGK
>NZ_CP017143.1|WP_005319562.1|852153_853353_-|histidine-decarboxylase
MCRHACIALAMGMIMGLSSEDAGKIESFWRYCVQHQYFNIGYPEAADFDYSALNRFLNFSINNCGDWSQQSNYLLNSFDFEREVMQFFATLFCIPFEQSWGYVTNGGTEGNMFGCYLARELFPEATLYYSKDTHYSVAKIIRLLRVKSCMVDSLPNGEMNYDDLINRIRLDGERHPIIFANIGTTMTGATDNIATIQRRLKKIGITKGDYYLHADAALSGMILPFIDNPQPFSFADGVDSISVSGHKMIGSPIPCGIVLARRKHVEHVSVEIDYISACDQTISGSRNGYTPLLLWMAIKSRSFSDWRQRTQHCLDMAQYVIERFHAKGIHAWRNPNSITVVFPKPADHIWKKHCLATSGKISHIITMPHHTGKETLDRVINDIALDREPGRGLAHALTV
>NZ_CP017143.1|WP_005319564.1|853492_853744_-|isochorismatase
MTNPEMISHQWLQERVQQLIEDNDTELDLEESLILYGLDSLRVMRFAAELKERNIHVSFEDLIKSPTLASWRELIANRQAIAR

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Crispr_ID: NZ_CP017143_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017143_5

1108172-1108270

Orphan

Consensus_repeat	Method
GCATAAAGATTGAACTATCGGTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017143_5

>merge|NZ_CP017143|5|1108172-1108270|CRISPRCasFinder
GCATAAAGATTGAACTATCGGTTTGGGGCCTATGGTCTTGACCCTTAGGCGACAATGGCCGCTGGCCGAATCAGCAGCATAAAGATTGAACTATCAGTT

>NZ_CP017143|5|5|1108172-1108270|CRISPRCasFinder
GCATAAAGATTGAACTATCGGTT	TGGGGCCTATGGTCTTGACCCTTAGGCGACAATGGCCGCTGGCCGAATCAGCA
GCATAAAGATTGAACTATCAGTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017143.1\|WP_005318348.1\|1104126_1105950_+\|ATP-dependent-DNA-helicase-RecQ	unknown	unknown	gnl\|CDD\|182933
NZ_CP017143.1\|WP_005318369.1\|1111855_1113280_-\|magnesium-transporter	unknown	unknown	gnl\|CDD\|225148
NZ_CP017143.1\|WP_042468409.1\|1098710_1099865_+\|polyamine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|183226
NZ_CP017143.1\|WP_085941554.1\|1103528_1103984_-\|thioesterase-family-protein	unknown	unknown	gnl\|CDD\|183276
NZ_CP017143.1\|WP_005318359.1\|1108354_1109029_+\|7-cyano-7-deazaguanine/7-aminomethyl-7--deazaguanine-transporter	unknown	unknown	gnl\|CDD\|183041
NZ_CP017143.1\|WP_005318344.1\|1102876_1103404_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017143.1\|WP_005318340.1\|1101651_1102356_+\|MOSC-domain-containing-protein	unknown	unknown	gnl\|CDD\|225167
NZ_CP017143.1\|WP_005319980.1\|1120508_1121156_-\|LysE-family-transporter	unknown	unknown	gnl\|CDD\|273358
NZ_CP017143.1\|WP_005318362.1\|1109300_1109786_-\|ribonuclease-E-activity-regulator-RraA	unknown	unknown	gnl\|CDD\|236487
NZ_CP017143.1\|WP_034282043.1\|1109931_1111785_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP017143.1\|WP_005318375.1\|1115713_1116031_-\|nitrite-reductase-small-subunit-NirD	unknown	unknown	gnl\|CDD\|181921
NZ_CP017143.1\|WP_076611341.1\|1116240_1117158_-\|IS5-like-element-ISAs4-family-transposase	unknown	unknown	gnl\|CDD\|290455
NZ_CP017143.1\|WP_011898246.1\|1097548_1098634_+\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP017143.1\|WP_042468407.1\|1100763_1101606_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|182574
NZ_CP017143.1\|WP_096071858.1\|1117609_1120372_+\|magnesium-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|237914
NZ_CP017143.1\|WP_005318334.1\|1099861_1100767_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|182646
NZ_CP017143.1\|WP_042468405.1\|1106458_1107886_+\|YdiU-family-protein	unknown	unknown	gnl\|CDD\|234583
NZ_CP017143.1\|WP_005318371.1\|1113430_1114837_-\|uroporphyrinogen-III-C-methyltransferase	unknown	unknown	gnl\|CDD\|182606
NZ_CP017143.1\|WP_005318352.1\|1106051_1106354_-\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|225418
NZ_CP017143.1\|WP_088814336.1\|1114864_1115662_-\|nitrite-transporter-NirC	unknown	unknown	gnl\|CDD\|183200

Protein	Function_ID	Function_description	E-value
NZ_CP017143.1\|WP_005318348.1\|1104126_1105950_+\|ATP-dependent-DNA-helicase-RecQ	gnl\|CDD\|182933	PRK11057, PRK11057, ATP-dependent DNA helicase RecQ; Provisional.	0
NZ_CP017143.1\|WP_005318369.1\|1111855_1113280_-\|magnesium-transporter	gnl\|CDD\|225148	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism].	2.62756e-151
NZ_CP017143.1\|WP_042468409.1\|1098710_1099865_+\|polyamine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|183226	PRK11607, potG, putrescine ABC transporter ATP-binding subunit PotG.	0
NZ_CP017143.1\|WP_085941554.1\|1103528_1103984_-\|thioesterase-family-protein	gnl\|CDD\|183276	PRK11688, PRK11688, thioesterase family protein.	6.82968e-82
NZ_CP017143.1\|WP_005318359.1\|1108354_1109029_+\|7-cyano-7-deazaguanine/7-aminomethyl-7--deazaguanine-transporter	gnl\|CDD\|183041	PRK11212, PRK11212, 7-cyano-7-deazaguanine/7-aminomethyl-7-deazaguanine transporter.	1.30694e-130
NZ_CP017143.1\|WP_005318340.1\|1101651_1102356_+\|MOSC-domain-containing-protein	gnl\|CDD\|225167	COG2258, COG2258, Uncharacterized protein conserved in bacteria [Function unknown].	1.3159e-65
NZ_CP017143.1\|WP_005319980.1\|1120508_1121156_-\|LysE-family-transporter	gnl\|CDD\|273358	TIGR00949, Uncharacterized_membrane_protein_YahN, The Resistance to Homoserine/Threonine (RhtB) Family protein. [Transport and binding proteins, Amino acids, peptides and amines].	2.3186e-31
NZ_CP017143.1\|WP_005318362.1\|1109300_1109786_-\|ribonuclease-E-activity-regulator-RraA	gnl\|CDD\|236487	PRK09372, PRK09372, ribonuclease E inhibitor RraA.	3.36801e-99
NZ_CP017143.1\|WP_034282043.1\|1109931_1111785_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	1.60308e-72
NZ_CP017143.1\|WP_005318375.1\|1115713_1116031_-\|nitrite-reductase-small-subunit-NirD	gnl\|CDD\|181921	PRK09511, nirD, nitrite reductase small subunit NirD.	2.85715e-69
NZ_CP017143.1\|WP_076611341.1\|1116240_1117158_-\|IS5-like-element-ISAs4-family-transposase	gnl\|CDD\|290455	pfam13737, DDE_Tnp_1_5, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	2.87975e-48
NZ_CP017143.1\|WP_011898246.1\|1097548_1098634_+\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NZ_CP017143.1\|WP_042468407.1\|1100763_1101606_+\|ABC-transporter-permease-subunit	gnl\|CDD\|182574	PRK10592, PRK10592, putrescine transporter subunit: membrane component of ABC superfamily; Provisional.	1.97935e-116
NZ_CP017143.1\|WP_096071858.1\|1117609_1120372_+\|magnesium-translocating-P-type-ATPase	gnl\|CDD\|237914	PRK15122, PRK15122, magnesium-transporting ATPase; Provisional.	0
NZ_CP017143.1\|WP_005318334.1\|1099861_1100767_+\|ABC-transporter-permease-subunit	gnl\|CDD\|182646	PRK10683, PRK10683, putrescine transporter subunit: membrane component of ABC superfamily; Provisional.	4.78085e-152
NZ_CP017143.1\|WP_042468405.1\|1106458_1107886_+\|YdiU-family-protein	gnl\|CDD\|234583	PRK00029, PRK00029, YdiU family protein.	0
NZ_CP017143.1\|WP_005318371.1\|1113430_1114837_-\|uroporphyrinogen-III-C-methyltransferase	gnl\|CDD\|182606	PRK10637, cysG, siroheme synthase CysG.	0
NZ_CP017143.1\|WP_005318352.1\|1106051_1106354_-\|c-type-cytochrome	gnl\|CDD\|225418	COG2863, COG2863, Cytochrome c553 [Energy production and conversion].	5.31089e-25
NZ_CP017143.1\|WP_088814336.1\|1114864_1115662_-\|nitrite-transporter-NirC	gnl\|CDD\|183200	PRK11562, PRK11562, nitrite transporter NirC; Provisional.	3.90243e-173

>NZ_CP017143.1|WP_042468405.1|1106458_1107886_+|YdiU-family-protein
MKLINTFATELPWACEPVVPQPLREPRLLHLNRGLLAELGLDGVSDTDWLACCGLGQPLPGMQPVAQVYAGHQFGGYSQRLGDGRALLLGEQLATDGQRWDLHLKGAGKTPFSRFGDGRAVLRSSIREYLASEALHALGIPTTRALVLVGSKEPVYREQEETGATVLRTAPSHLRFGHIEYFAWSGQGEKIPALIDYLLRYHFPELENGAELFAEVVRRTARLIAKWQAAGFCHGVLNTDNMSLLGLTLDYGPYGFIDAYVPDFVCNHSDPDGRYALDQQPAVGYWNLQKLAQALAGHVDGDALATSLAQYEHQLMLHYSELMRAKLGLTQWEEEDPALFRQLFQLLASQGVDYHLFLRRLGEVTGTGEWPASLLALLPDPDLWQGWLELYRVRLTREGGEDAVRKAQMDAINPKYVLRNALAQQAIDAAEGGDMTQFERLLAALQQPYDEQPEYADLATPVPQWYCGGELSCSS
>NZ_CP017143.1|WP_005318352.1|1106051_1106354_-|c-type-cytochrome
MQRWVYALPLLALAWGHLAKAADIEAGKAKAAVCAACHGVEGKALIPHYPHLAGQNHAYLVKQLKAFKDGSRQEPLMVPFMAPLTEADMENLAAFYASLK
>NZ_CP017143.1|WP_005318348.1|1104126_1105950_+|ATP-dependent-DNA-helicase-RecQ
MTVIAETLPDTPLALLQAVFGYQQFRPGQLEIIEQIVAGRDAMVLKPTGGGKSLCFQIPALLRPGLGVVVSPLISLMKDQVDSLRANGVAAIYINSALSREEMIQNFAAMRRGEIKLLYVSPERLLQHEFMDRLAELPLGLFAIDEAHCVSQWGHDFRPEYAALGRLKQWFPQVPVVALTATADEATRSDMLHRLELNDPFIHTASFDRPNIRYSLVEKFKAAEQLLRYVQSQKGNCGIVYCSSRNRVEEVAERLSRHGSKAAPYHAGLPLAQRQQTQDAFLKDDIEIVVATVAFGMGIDKPNVRFVVHYDIPKNIESYYQETGRAGRDGTPAEALLLYDPADIGRVRRLLDNIENPQQLQVEQYKLNVMAAFAEAQTCRRQVLLNYFGEYNDKPCGNCDICLDPPKSYDGTEDAQKALSCVWRVGQNFGVGYVVEVLRGSLNQRIKDHGHDKLSTYGIGKDQSHEYWMSVIRQLIHKGLLTQNITRNLVLQLTEASRPVLRGEMKLELAVPRLQPISSRKEKRNGLLDNANYDKRLFKELRGLRKQIAEDEEVPPYVVFNDATLVEMAQLMPMTEAEMLAINGVGHRKLERFGEAFMDLIIDYCRR
>NZ_CP017143.1|WP_085941554.1|1103528_1103984_-|thioesterase-family-protein
MLKKMALSGIANLFAERMPFNKLIGMQVTHYDFDKVELRIKMDDKLIGNPFHNILHGGVTASLLDVAGGMIVAASCIDELEDFSPNYLKERFSRLGTIDLRVDYLRPGRGNEFIATAHIIRAGSKVAVARMELHNEEGTHIAFGTGTYLVG
>NZ_CP017143.1|WP_005318344.1|1102876_1103404_-|hypothetical-protein
MSAKLATKPSRALLTQLESMLDEVQTPECRHWLEQELEGYSLCSHLPWYRIVACRQRGHFLDLKTGKYLTCHINSQTLSQRDLAQIQFIYAREPAAHYLLQRNSGIEPWPEQLLEDYQEQLIPGHLCLQAWHEPVSSLRSQLMEGIEHFISEYPKHAALQPQHSFKALRHQHWHI
>NZ_CP017143.1|WP_005318340.1|1101651_1102356_+|MOSC-domain-containing-protein
MRIFIFSGQGTELVPGLVSAINKQATTIPLWCGFGGLGGDEQSDPRHHGGPDRALHYYPADHYPWWHNWQTAMGLAAPRTPWQPAAFGENLSGLGLTEEQACIGDVYRLGEALIQISQPRSPCFKLNLRFGYPQLSQVMQLSVRCGWLLRVLEEGTVAPQETMELVDRPYPALTVKRTADILFNQVRHEADLLLLLENPALSPNWRQHAANWLEHGVVADWQRRLLGPAEFQFS
>NZ_CP017143.1|WP_042468407.1|1100763_1101606_+|ABC-transporter-permease-subunit
MKRFGFAKMMLWLGLLFIYLPMVIMVIYSFNSSKLVTVWGGWSLKWYFGLLDNKQLIGSVLRSLEIALYTAVAAVALGTVAAFVLTRIPHFRGRTLFGGMVTAPLVMPEVITGLSLLLLFVAMAQLVGWPAERGMLTIWIAHTTFCTAYVAIVVSARLRELDLSIEEAAMDLGAKPWKVFFLITIPMIAPSLAAGGMMSFALSLDDLVLASFVSGPGATTLPMEVFSAVRLGVKPEINAVVSLILLSVSLFTFSSWYLMARAEKRRRAEIAMTTQMQAVA
>NZ_CP017143.1|WP_005318334.1|1099861_1100767_+|ABC-transporter-permease-subunit
MKALRRLKRLGGRQLVIGIPFFWLFLFFLLPFIIVVKISFAEADVAIPPYTDVVSWADNQLTILLNLGNYLLLQEDELYIAAYIGSLKIAFISTVLCLLIGYPMAYTIARANKETQTVLLLLIMMPTWTAILIRVYAWMGILSNNGLLNSLLMGIGLIDEPLQILNTNLAVYIGIVYSYLPFMVLPLYANLVKHDQSLLEAASDLGARNLTRFWRITVPLSKNGIIAGCMLVFIPVVGEFVIPELLGGPETLMIGKVLWQEFFNNRDWPVASALAVVMLAVLIVPIILFNRNQAKELEGKV
>NZ_CP017143.1|WP_042468409.1|1098710_1099865_+|polyamine-ABC-transporter-ATP-binding-protein
MAIASSAYKKALEGNQQRKEVLVKIDRVSKQFDETLAVDNVSHNIHKGEIFALLGGSGSGKSTLLRMLAGFERPTEGRLFLDGVDITDMPPYERPINMMFQSYALFPHMTVAQNIAFGLKQDGLPKAEVDARVEEMLKLVQMAQYARRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRSQMQLELVEIIERVGVTCVMVTHDQEEAMTMAERIAIMHLGCIEQIGSPMDIYETPASRLVCEFIGNVNLFDGLLVEDEQDHATIACADLEQPIYVGHGISSRAENKKVTYALRPEKLLMSTQKPTEIEHPDFNWTKGEVYDIAYLGGHSVYHIQLPSGKIVQAFIANAERHGKRPTWDDQVFLYWEDDSGVVLQS
>NZ_CP017143.1|WP_011898246.1|1097548_1098634_+|polyamine-ABC-transporter-substrate-binding-protein
MHTTKTVTMTLALGLASLAHAAPVVHFYNWSDYIGETTLSDFQQATGIKTVYDVFDSNETLEGKLLTGRTGYDLVVPSNNFLAKQITAGAFQKLDPALLPNLVNLDPVLLKQLDKVDPGHQYAVPYLWGTNGIGYNVDKIKDVLGVDKIDSWAVIFEPENMQKLSRCGVAFLDSADEMIPAVLNYLGLDPNSHKPEDIKRAEEQLLKVRPYVTYFHSSKYIGDLANGDICVAAGFSGDILQAAARADEAGKGINIAYSIPKEGGNLWFDMMAIPADATNVKEAHALINYVLQPEVIAKVSNYVGYANPNAKAGEYMDESVRDDESVYPPQAVLERLYVQQAHPRAVQRLITRSWTKIKSGT
>NZ_CP017143.1|WP_005318359.1|1108354_1109029_+|7-cyano-7-deazaguanine/7-aminomethyl-7--deazaguanine-transporter
MNLTPAQHRTALVRLSLFHILIIASSNYLVQLPITIFGFHTTWGAFSFPFIFLATDLTVRIFGAGLARKIIQTVMLPALTVSYVLSVLFFEGSFQGVGNLAEFNLFVARIALASFMAYLVGQFMDVVVFNRLRLLRAWWVAPAASTLFGNLVDTIAFFSIAFWRSTDPFMADHWVEIATVDYVFKLLISLGLFVPLYGVLLRYLSRKLVGEAGLAGLQTATRQA
>NZ_CP017143.1|WP_005318362.1|1109300_1109786_-|ribonuclease-E-activity-regulator-RraA
MEYNTSELCDIYQDMVDVLEPMLCSFGGRASFGGVITTVKCFESNGLIRELVKENGVGRVLLIDGGGSMRRALIDSDIATTAAENEWEGIVCYGCVREVDILEDLDIGIQALAAIPVGADSKDVGETDLPVNFGGVTFLPDDHLYADTTGVILSPEALDIE
>NZ_CP017143.1|WP_034282043.1|1109931_1111785_+|methyl-accepting-chemotaxis-protein
MLIRHKLILNTALVAVAMLVLSALFLYSSQVSRHLAEAQRNVDGLEIAMLNLRRAEKDFLIRKDLTFVERFNKELADFHTLNRTLSTDDNISVVHGELARLDQQMGLYGKAFNDLVSQQQTIGLGPEDGLYGRLRAAVHQVEEGLKQLDQQGLLVTMLQLRRAEKDFMLRSDIQYLERFQTLHKSFQDNLAALPEADRGKLEQASQQYRQDFVALVQGMQVLGLKEDEGLRNQMRDLVHQTEQGFAAVGQHIADELVRQTSRLNSLMLVCGGVIIVLIGVMSVLLGRSIDRPISRVNDTVNRIRQDNDLRLRIELKGADEMAQLAGNLDVMLGGFRHLIGDVKQSVHTLTEAADHLSSNVRRTSEGASRQLQETDQVATASTEMGSTIEEIARNTEQAANNAQATNIKAMEGRTAVENTVRQIRSLAGNLESSSREVAQLQKESETIGSVLDVIRGIAEQTNLLALNAAIEAARAGDQGRGFAVVADEVRSLAIRTQKSTQEIAGIISSLQKQTGSIVGMMATCREQGNSSSEQASTAGDLLGQITQDVTHIMDMSTQIAAAIEQQSLVANEVNRNVTNIRDIAQESSLMAEENAKSSHGLTEQAKLLHQAVAKYRV
>NZ_CP017143.1|WP_005318369.1|1111855_1113280_-|magnesium-transporter
MSHPVKNSAKQREKDRRRILTLLLADDALTDSLLDPQSAQDAAQRDQTGEIIRLVNRLPAADVADTLESLPPDERHALWQLVNEEKHGQILVEASETVWDSLINGMSDKALLHALRSLDIDDQIYLGQYLPRNLMGRLLTSMAPPQRDRVRDVIRYGKHTVGAMMDFEIITVRAEVSLATVQRYLRLRAKIPVNTDKLFVIDRRNRLQGELPLTTLLLHKPDTLVANVMERDPVTFDPEDNDEAAARTFERDDLISAAVVDAKGKLMGRLTVAEVVDLVYEESDTDLRRMGGISEDEDLFAPVSKAVKTRWAWLAINLCTAFVASRVIGLFEHTISQLVALAALMPIVAGIGGNTGNQTITMIVRALALQHIQAGNISFLLWRELGVALVNGLVWGGTMGVATYLLYQDPALGAVMTLAMMINLLVAALMGVMIPMTMTRLGRDPAIGASVMITAITDTGGFFIFLGLATLFLI
>NZ_CP017143.1|WP_005318371.1|1113430_1114837_-|uroporphyrinogen-III-C-methyltransferase
MDYLPIFCRLDNKPVLLVGGGEVAERKARLLLDAGARLTVVSPALDPELAALATSGTIDWLAAEFEPAHLTGKWLVVAATDRREVNALVYQSANQAGIFANVVDDPKRSSFIMPSIIDRSPLMVAISSGGKAPVLARLLREKLEALLPQHLGAVAAFAGGLRARVKARFASMGERRQFWERLLSADRLGQALARGDKASANQLADTLFAEETGAKGEVILVGAGPGDPGLLTLHALRHMQQADLVVYDQLVSDEVMALVRRDARRIFVGKQAGNHCVPQEGINQLLLEEASKGQRVVRLKGGDPFIFGRGGEELETLVGSGVGFQVVPGITAASGCAAYAGIPLTHRDHAQSVRFVTAHGKGGTQDLDWPLLARDQQTLVFYMGLSSCATIRQKLTAHGKAGTTPVALIERGTQLNQRVIRGTLDQLPELAVGVESPALIMVGSVVTLADKLAWFGQTNHGVQAAALA
>NZ_CP017143.1|WP_088814336.1|1114864_1115662_-|nitrite-transporter-NirC
MYTETINKCAANAARINRFERSDKLGFWLSSAMAGAYVGLGIILIFTLGNLVDPSIRPLVMGATFGIALTLVIIAGSELFTGHTMFLTFGVKTGKITMTDLLRILPQTWAGNLLGSIAVALIYSYGGSLLPDAGSLAHKVALAKTQAPALTLFMKGILCNWLVCLAIWMALRTEGAAKFIAIWWCLLAFIASGYEHSVANMTLFALSWFGAHSEAYTLGGIGHNLLWVTLGNTVSGALFMGLGYWYATPKADRPVAVTDANAAAS
>NZ_CP017143.1|WP_005318375.1|1115713_1116031_-|nitrite-reductase-small-subunit-NirD
MKFACQLNDILPGTGVCALIEGRQIALFRPSAAAEVFAIDNRDPFFAANVLSRGLICEHEGALWVASPLKKQRFRLSDGHCFENPAMSIASYAVEVRDQQVWVAV
>NZ_CP017143.1|WP_076611341.1|1116240_1117158_-|IS5-like-element-ISAs4-family-transposase
MGKALHPITNWPQYNRSLINRGSLTFWVDAEAMDNWFHQDHHGKRGRSQLYTDQSICTFLMLKGIFSLTLRATQGLLDSLFELMNVPLCAPDYSCVSKRARTVKVAYRQPPKGRITDLVIDSTGLKVFGEGEWKVRKHGAEKRRVWRKLHLAVDPVTHDIVAAEVSLENVHDAEVLPTLLNPLRRKLGRVYADGAYDSKASHRLIARKGATACIPPRKNAGLWKKGHPRNEAVQVMRKEGLAHWKKISGYHRRSLAETAMFRFKQLMAGQITLRKYNGQVGEVMAYVSAINKLNTLGLPVRKPRV
>NZ_CP017143.1|WP_096071858.1|1117609_1120372_+|magnesium-translocating-P-type-ATPase
MKQQHTASRHKQKGFVSPGRANEKLSSRVLDEADKSLEYTLTAVRGNIDGLTSTEAANRLVQFGPNEVTHDKPPHPLIQLMQAFKNPFVMVLIVLGLVSYVMDVLMAEPGDEDWVKVIILGVMVSLSGLLRFWQEYRSAKAAETLKSLMRNTATVLRHPSPGAPSQRKEVAMVELVAGDIVHLQAGDMIPADIKLIESRDLFISQAVLTGEALPVEKYDTLGAVAEKSADGSSTGEVGLLDLPNICFMGTNVVSGTAKAVVVATGSDTYFGSLARNVVSHKRIETSFDRGVNSVTRLLIRFMLVMVPVVFMLSGVSSGDWMSALTFALAVAVGLTPEMLPMIVSANLARGAVAMAKRKVVVKRLNSVQNFGAIDVLCTDKTGTLTQDKIILEHHYDVRGSRDDRILQLAWLNSYHQSGMKNLMDIAVIEHADVLGDSCKPSNYSKVDELPFDFVRRRLSVIVQDDLGQQLMVSKGAVEEMLSVSSHIDDGKQIRELDEIERRALLRRSEEYNADGYRVLIVATRDIPAAECKQSYRTSDEAGLVVRGFLTFFDPPKDSAAPAIRALNDYGVAVKVLTADNPIITSKVCRDVGLNPGVPLLGKDIEVMDDVALCTVVKHTTIFAKLTPLQKSRVVKALQANGNTVGFLGDGINDAPALRDADVGISVDSGADIAKETADIILLEKSLMVLEEGVVKGRETFGNILKYLNMTASSNFGNVFSVLVASAWLPWAPMLAMQMLIQNLVYDVSQMLLPWDKMDPEFLKRPRKWEASNIKRFMLWLGPTSSVFDISTFCLMWFVFGAGAMYATANGSMDPLVNGQAIMNSGWFIEGLVSQTLVVHMLRTRKIPFLQSTATLPVLLSTSIAIAIGCYLPFSPLAEHFGFITLEAPRYFMWLVITMLAYMGLTQAIKTIYIKRHGQWF
>NZ_CP017143.1|WP_005319980.1|1120508_1121156_-|LysE-family-transporter
MFTSLFLTIGLIHLIALASPGPDFALILRTSLHRPTALGAALGIALAILLHATLSLTGISLLIAEHPWLFMAVKVVGALYLGWLGWGALKAAWHSSATLALKAGGEQQGWRKGIGSGLATNLLNPKALLFFMGLLAAMVTPQVDGLTRGLLVLELFLLSLVWFGVLAWSLSTPRAQRLLGRIQRPLNLVTGLLFGAVSLSILTGMAGEAYALVPH

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Crispr_ID: NZ_CP017143_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017143_6

1125122-1125264

Orphan

Consensus_repeat	Method
CGAGATCAGCCCGAACCCTGTCAAATGGCG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP017143_6

>merge|NZ_CP017143|6|1125122-1125264|CRISPRCasFinder
TGAGAGCAGCTCGAACACTGTTCAATGATGCTGCCTTGCGACTCTGTGTGGCCTTCGAGATCAGCCCGAACCCTGTCAAATGGCGATTTGGAAACTGGCCGGCGTGACTTGCCCGAGATCAGTCCGAACCCTGTCAAATGGCG

>NZ_CP017143|6|6|1125122-1125264|CRISPRCasFinder
TGAGAGCAGCTCGAACACTGTTCAATGATG	CTGCCTTGCGACTCTGTGTGGCCTT
CGAGATCAGCCCGAACCCTGTCAAATGGCG	ATTTGGAAACTGGCCGGCGTGACTTGCC
CGAGATCAGTCCGAACCCTGTCAAATGGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017143.1\|WP_005319948.1\|1132124_1132577_+\|Rrf2-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|236820
NZ_CP017143.1\|WP_005319966.1\|1125266_1125809_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|182158
NZ_CP017143.1\|WP_005319975.1\|1122159_1123062_-\|EamA-family-transporter-RarD	unknown	unknown	gnl\|CDD\|185328
NZ_CP017143.1\|WP_005319959.1\|1127420_1128917_+\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143404
NZ_CP017143.1\|WP_005319946.1\|1132678_1133191_-\|ferredoxin-type-protein-NapF	unknown	unknown	gnl\|CDD\|319886
NZ_CP017143.1\|WP_005319980.1\|1120508_1121156_-\|LysE-family-transporter	unknown	unknown	gnl\|CDD\|273358
NZ_CP017143.1\|WP_085941537.1\|1133317_1133545_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017143.1\|WP_005319939.1\|1133541_1134882_+\|DNA-recombination-protein-RmuC	unknown	unknown	gnl\|CDD\|182409
NZ_CP017143.1\|WP_005319953.1\|1129754_1130870_+\|alanine-dehydrogenase	unknown	unknown	gnl\|CDD\|240630
NZ_CP017143.1\|WP_005318371.1\|1113430_1114837_-\|uroporphyrinogen-III-C-methyltransferase	unknown	unknown	gnl\|CDD\|182606
NZ_CP017143.1\|WP_005319978.1\|1121272_1122091_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP017143.1\|WP_005318375.1\|1115713_1116031_-\|nitrite-reductase-small-subunit-NirD	unknown	unknown	gnl\|CDD\|181921
NZ_CP017143.1\|WP_005319969.1\|1123486_1124983_-\|aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143430
NZ_CP017143.1\|WP_017411931.1\|1125982_1127314_+\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|181707
NZ_CP017143.1\|WP_005319956.1\|1129002_1129758_+\|glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|168162
NZ_CP017143.1\|WP_076611341.1\|1116240_1117158_-\|IS5-like-element-ISAs4-family-transposase	unknown	unknown	gnl\|CDD\|290455
NZ_CP017143.1\|WP_005319951.1\|1130986_1131826_+\|carbohydrate-kinase	unknown	unknown	gnl\|CDD\|238922
NZ_CP017143.1\|WP_096071858.1\|1117609_1120372_+\|magnesium-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|237914
NZ_CP017143.1\|WP_088814336.1\|1114864_1115662_-\|nitrite-transporter-NirC	unknown	unknown	gnl\|CDD\|183200
NZ_CP017143.1\|WP_011899215.1\|1123187_1123478_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP017143.1\|WP_005319948.1\|1132124_1132577_+\|Rrf2-family-transcriptional-regulator	gnl\|CDD\|236820	PRK11014, PRK11014, HTH-type transcriptional repressor NsrR.	5.50142e-51
NZ_CP017143.1\|WP_005319966.1\|1125266_1125809_-\|cupin-domain-containing-protein	gnl\|CDD\|182158	PRK09943, PRK09943, HTH-type transcriptional regulator PuuR.	1.28881e-47
NZ_CP017143.1\|WP_005319975.1\|1122159_1123062_-\|EamA-family-transporter-RarD	gnl\|CDD\|185328	PRK15430, PRK15430, EamA family transporter RarD.	1.20149e-124
NZ_CP017143.1\|WP_005319959.1\|1127420_1128917_+\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	gnl\|CDD\|143404	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.	0
NZ_CP017143.1\|WP_005319946.1\|1132678_1133191_-\|ferredoxin-type-protein-NapF	gnl\|CDD\|319886	cd10564, NapF_like, NapF, iron-sulfur subunit of periplasmic nitrate reductase. This family contains NapF protein, the iron-sulfur subunit of periplasmic nitrate reductase. The periplasmic nitrate reductase NapABC of Escherichia coli likely functions during anaerobic growth in low-nitrate environments; napF operon expression is activated by cyclic AMP receptor protein (Crp). NapF is a subfamily of the beta subunit of DMSO reductase (DMSOR) family. DMSOR family members have a large, periplasmic molybdenum-containing alpha subunit as well as a small beta FeS subunit, and may also have a small gamma subunit. The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.	1.25455e-41
NZ_CP017143.1\|WP_017411931.1\|1125982_1127314_+\|aspartate-aminotransferase-family-protein	gnl\|CDD\|181707	PRK09221, PRK09221, beta alanine--pyruvate transaminase; Provisional.	0
NZ_CP017143.1\|WP_005319939.1\|1133541_1134882_+\|DNA-recombination-protein-RmuC	gnl\|CDD\|182409	PRK10361, PRK10361, DNA recombination protein RmuC; Provisional.	5.27863e-149
NZ_CP017143.1\|WP_005319953.1\|1129754_1130870_+\|alanine-dehydrogenase	gnl\|CDD\|240630	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains. Alanine dehydrogenase (L-AlaDH) catalyzes the NAD-dependent conversion of pyruvate to L-alanine via reductive amination. Like formate dehydrogenase and related enzymes, L-AlaDH is comprised of 2 domains connected by a long alpha helical stretch, each resembling a Rossmann fold NAD-binding domain. The NAD-binding domain is inserted within the linear sequence of the more divergent catalytic domain. Ligand binding and active site residues are found in the cleft between the subdomains. L-AlaDH is typically hexameric and is critical in carbon and nitrogen metabolism in micro-organisms.	0
NZ_CP017143.1\|WP_005318371.1\|1113430_1114837_-\|uroporphyrinogen-III-C-methyltransferase	gnl\|CDD\|182606	PRK10637, cysG, siroheme synthase CysG.	0
NZ_CP017143.1\|WP_005319978.1\|1121272_1122091_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	7.93867e-28
NZ_CP017143.1\|WP_005318375.1\|1115713_1116031_-\|nitrite-reductase-small-subunit-NirD	gnl\|CDD\|181921	PRK09511, nirD, nitrite reductase small subunit NirD.	2.85715e-69
NZ_CP017143.1\|WP_005319969.1\|1123486_1124983_-\|aldehyde-dehydrogenase	gnl\|CDD\|143430	cd07112, ALDH_GABALDH-PuuC, Escherichia coli NADP+-dependent gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase PuuC-like. NADP+-dependent, gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (GABALDH) PuuC of Escherichia coli which catalyzes the conversion of putrescine to 4-aminobutanoate and other similar sequences are present in this CD.	0
NZ_CP017143.1\|WP_005319980.1\|1120508_1121156_-\|LysE-family-transporter	gnl\|CDD\|273358	TIGR00949, Uncharacterized_membrane_protein_YahN, The Resistance to Homoserine/Threonine (RhtB) Family protein. [Transport and binding proteins, Amino acids, peptides and amines].	2.3186e-31
NZ_CP017143.1\|WP_076611341.1\|1116240_1117158_-\|IS5-like-element-ISAs4-family-transposase	gnl\|CDD\|290455	pfam13737, DDE_Tnp_1_5, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	2.87975e-48
NZ_CP017143.1\|WP_005319951.1\|1130986_1131826_+\|carbohydrate-kinase	gnl\|CDD\|238922	cd01947, Guanosine_kinase_like, Guanosine kinase-like sugar kinases. Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.	2.00919e-57
NZ_CP017143.1\|WP_096071858.1\|1117609_1120372_+\|magnesium-translocating-P-type-ATPase	gnl\|CDD\|237914	PRK15122, PRK15122, magnesium-transporting ATPase; Provisional.	0
NZ_CP017143.1\|WP_088814336.1\|1114864_1115662_-\|nitrite-transporter-NirC	gnl\|CDD\|183200	PRK11562, PRK11562, nitrite transporter NirC; Provisional.	3.90243e-173
NZ_CP017143.1\|WP_005319956.1\|1129002_1129758_+\|glutamine-amidotransferase	gnl\|CDD\|168162	PRK05665, PRK05665, amidotransferase; Provisional.	3.2064e-68

>NZ_CP017143.1|WP_005319969.1|1123486_1124983_-|aldehyde-dehydrogenase
MSDLTLAQWQHKAAHLTLPSQAFIDGSYRDAINGATFDCINPANGKLLTKVAACDAADAELAVQAARAAFNDKRWSGLAPKQRKLIMQRFADLMRLNKVELALLESLDMGKPIGDAMGYDAPAAANCIAWNAEAIDKIYDQVAPVEESALALVTREALGVVAAIVPWNFPLVMACWKLGPALATGNSVILKPSEKSPLTALRIAGIAKEAGIPDGVFNVLPGFGHTVGEALAMHMDVDCITFTGSTKIGKHLVECSGKSNLKRAFMECGGKSPNIILADAPDLDAAAKSAAGAIFYNQGEVCTAASRLLVQNSIKPKFMERLLAHAREWIAANPLDPATRIGAMVDGIQMEQVLRYIDIGQQEGAKLLLGGKRTNMESGGFYIEPTIFDEVTPEMRIFREEIFGPVLAVTGFDTLEEAIALGNDTDYGLAAALWTADLNKAIKGSRALRAGTVFVNNWDGGDMTMPFGGFKQSGNGRDKSLHALEKYTELKSTWIQLE
>NZ_CP017143.1|WP_011899215.1|1123187_1123478_-|hypothetical-protein
MTLIREIGGEILLFHFCPFIARLNRYNRQLDKPLNIKIKMLFFLGSVLFLVIGLPLLFYLLGQGEAYVIWGPWISAIALMLWLLLDVEKIRRGGGR
>NZ_CP017143.1|WP_005319975.1|1122159_1123062_-|EamA-family-transporter-RarD
MQQQVQRQGIIYALCAYTLWGLAPIYFKTLSAVPAAEILTHRMIWSCVLLMVLTLLGRQWHKVQAVLRQPKVLLTLAFTSVTVGGNWLLFIWAINNGHMLDASLGYYINPLFNVLLGMLFLSEQLRRLQWWAVGLAVIGVTVQLIAFGSLPWIALVLASSFAIYGLIRKKLALDALTGLLIETMIMLPPAAIYLWGFADSPTSHMTENDWHLNLLLIAAGAVTTAPLLCFTAAATRLKLSTLGFFQYIGPSLMFILAVTLYGEALTPDKLITFGCIWSALVLFSLDGLRSGKRRRAASQG
>NZ_CP017143.1|WP_005319978.1|1121272_1122091_-|AraC-family-transcriptional-regulator
MSAPQSRIHYWQSRLLPGVELSHSHHREFSYGRHVHLDYHIGLVQQGGQKFIHKGSSHNLVRGELSTVNPDEMHDGLSLLPEGYEVRVFAIAPEQLARWLPDSPEPFFDKGLQSRPDLYQGFARLHMYLDTPQADGLLAESQLLALLGELLHIAPERHALADPQLRYLRDYLLARLDERHSLEDLAALFGLDRFAFLRQFKKKTGMTPYAWLKRLRLEQGKRLLGSGLPVSEVALAVGFFDQSHFHHGFRQAFGLTPADYRQQMQSFTGQPG
>NZ_CP017143.1|WP_005319980.1|1120508_1121156_-|LysE-family-transporter
MFTSLFLTIGLIHLIALASPGPDFALILRTSLHRPTALGAALGIALAILLHATLSLTGISLLIAEHPWLFMAVKVVGALYLGWLGWGALKAAWHSSATLALKAGGEQQGWRKGIGSGLATNLLNPKALLFFMGLLAAMVTPQVDGLTRGLLVLELFLLSLVWFGVLAWSLSTPRAQRLLGRIQRPLNLVTGLLFGAVSLSILTGMAGEAYALVPH
>NZ_CP017143.1|WP_096071858.1|1117609_1120372_+|magnesium-translocating-P-type-ATPase
MKQQHTASRHKQKGFVSPGRANEKLSSRVLDEADKSLEYTLTAVRGNIDGLTSTEAANRLVQFGPNEVTHDKPPHPLIQLMQAFKNPFVMVLIVLGLVSYVMDVLMAEPGDEDWVKVIILGVMVSLSGLLRFWQEYRSAKAAETLKSLMRNTATVLRHPSPGAPSQRKEVAMVELVAGDIVHLQAGDMIPADIKLIESRDLFISQAVLTGEALPVEKYDTLGAVAEKSADGSSTGEVGLLDLPNICFMGTNVVSGTAKAVVVATGSDTYFGSLARNVVSHKRIETSFDRGVNSVTRLLIRFMLVMVPVVFMLSGVSSGDWMSALTFALAVAVGLTPEMLPMIVSANLARGAVAMAKRKVVVKRLNSVQNFGAIDVLCTDKTGTLTQDKIILEHHYDVRGSRDDRILQLAWLNSYHQSGMKNLMDIAVIEHADVLGDSCKPSNYSKVDELPFDFVRRRLSVIVQDDLGQQLMVSKGAVEEMLSVSSHIDDGKQIRELDEIERRALLRRSEEYNADGYRVLIVATRDIPAAECKQSYRTSDEAGLVVRGFLTFFDPPKDSAAPAIRALNDYGVAVKVLTADNPIITSKVCRDVGLNPGVPLLGKDIEVMDDVALCTVVKHTTIFAKLTPLQKSRVVKALQANGNTVGFLGDGINDAPALRDADVGISVDSGADIAKETADIILLEKSLMVLEEGVVKGRETFGNILKYLNMTASSNFGNVFSVLVASAWLPWAPMLAMQMLIQNLVYDVSQMLLPWDKMDPEFLKRPRKWEASNIKRFMLWLGPTSSVFDISTFCLMWFVFGAGAMYATANGSMDPLVNGQAIMNSGWFIEGLVSQTLVVHMLRTRKIPFLQSTATLPVLLSTSIAIAIGCYLPFSPLAEHFGFITLEAPRYFMWLVITMLAYMGLTQAIKTIYIKRHGQWF
>NZ_CP017143.1|WP_076611341.1|1116240_1117158_-|IS5-like-element-ISAs4-family-transposase
MGKALHPITNWPQYNRSLINRGSLTFWVDAEAMDNWFHQDHHGKRGRSQLYTDQSICTFLMLKGIFSLTLRATQGLLDSLFELMNVPLCAPDYSCVSKRARTVKVAYRQPPKGRITDLVIDSTGLKVFGEGEWKVRKHGAEKRRVWRKLHLAVDPVTHDIVAAEVSLENVHDAEVLPTLLNPLRRKLGRVYADGAYDSKASHRLIARKGATACIPPRKNAGLWKKGHPRNEAVQVMRKEGLAHWKKISGYHRRSLAETAMFRFKQLMAGQITLRKYNGQVGEVMAYVSAINKLNTLGLPVRKPRV
>NZ_CP017143.1|WP_005318375.1|1115713_1116031_-|nitrite-reductase-small-subunit-NirD
MKFACQLNDILPGTGVCALIEGRQIALFRPSAAAEVFAIDNRDPFFAANVLSRGLICEHEGALWVASPLKKQRFRLSDGHCFENPAMSIASYAVEVRDQQVWVAV
>NZ_CP017143.1|WP_088814336.1|1114864_1115662_-|nitrite-transporter-NirC
MYTETINKCAANAARINRFERSDKLGFWLSSAMAGAYVGLGIILIFTLGNLVDPSIRPLVMGATFGIALTLVIIAGSELFTGHTMFLTFGVKTGKITMTDLLRILPQTWAGNLLGSIAVALIYSYGGSLLPDAGSLAHKVALAKTQAPALTLFMKGILCNWLVCLAIWMALRTEGAAKFIAIWWCLLAFIASGYEHSVANMTLFALSWFGAHSEAYTLGGIGHNLLWVTLGNTVSGALFMGLGYWYATPKADRPVAVTDANAAAS
>NZ_CP017143.1|WP_005318371.1|1113430_1114837_-|uroporphyrinogen-III-C-methyltransferase
MDYLPIFCRLDNKPVLLVGGGEVAERKARLLLDAGARLTVVSPALDPELAALATSGTIDWLAAEFEPAHLTGKWLVVAATDRREVNALVYQSANQAGIFANVVDDPKRSSFIMPSIIDRSPLMVAISSGGKAPVLARLLREKLEALLPQHLGAVAAFAGGLRARVKARFASMGERRQFWERLLSADRLGQALARGDKASANQLADTLFAEETGAKGEVILVGAGPGDPGLLTLHALRHMQQADLVVYDQLVSDEVMALVRRDARRIFVGKQAGNHCVPQEGINQLLLEEASKGQRVVRLKGGDPFIFGRGGEELETLVGSGVGFQVVPGITAASGCAAYAGIPLTHRDHAQSVRFVTAHGKGGTQDLDWPLLARDQQTLVFYMGLSSCATIRQKLTAHGKAGTTPVALIERGTQLNQRVIRGTLDQLPELAVGVESPALIMVGSVVTLADKLAWFGQTNHGVQAAALA
>NZ_CP017143.1|WP_005319966.1|1125266_1125809_-|cupin-domain-containing-protein
MDIGHRLKAVRTKAALSQRELAKRSGVTNGFISQIEKNQVSPSVSSLRKVLEGIPMSLASFFTEETEMGTEVIFRASDMPDLGTHPISYRLVGHSRANRAIGMMQEILPPGADTGDDMLSHEGEECGIVIQGTVEVTIGEQIHQLAPGDGYYFDSRTPHRFRNVGEQECVLISANTPASF
>NZ_CP017143.1|WP_017411931.1|1125982_1127314_+|aspartate-aminotransferase-family-protein
MKPISDINTPSDMSAFWMPFTANQQFKAAPRILKSAEGMYYHSEDGRKILDGTAGLWCCNAGHGRREIAEAVSQQISHLDFAPTFQMGHPLPFELANQLVEIAPQGFGHVFYTNSGSESVDTALKIALAWQRARGQGTRTRLIGRERGYHGVGFGGISVGGIPGNRKWFGSLLTGVDHLPHTLNIAKHAFTRGLPDEDVTLADELEKIVFLHDASNIAAVIVEPIAGSTGVIMPPKGYLKRLREICTKHGILLIFDEVITGFGRLGSPFAAQEFDVIPDMITCAKGLTNGAIPMGAVMVRNGIYDDMMAAGKGAIELFHGYTYSGHPVAAAAALATLDIYRNENLLTRAADLAGYWEEAAHSLKGCKHVKDVRNYGLVAGIELESMPDAPGKRAYEVFVRCFEKGALVRVTGDIIALSPPLIIERSQIDDLFTLLQDVLQTQD
>NZ_CP017143.1|WP_005319959.1|1127420_1128917_+|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase
MTYRVSNFIDGQLQQSHSERFGAIFNPATGQQQGSVALATAAECGEAIAVAERAFTDWSQTPPLVRARVLFRFKELMERHRDELAELISREHGKVFSDAQGELTRGLEVVEFACGIPHLLKGEHSLNVGRGVDSHSMMQPVGVCAGITPFNFPAMVPLWMFPVAIACGNTFILKPSEKDPSLSLRMAELLKQAGLPDGVLNVVNGDKEVVDVLLTDPRVGAVSFVGSTPIAEYIYATASAHGKRVQALGGAKNHMLVMPDADLDQAVSALMGAAYGAAGERCMAISVAVVVGDETADALVAKLAPLVETLRVGPGLGQVPENEMGPLISREHLAKVRSYVDQGVAEGALLRVDGRGVSHGEGYFIGGSLFDEVTPEMRIYREEIFGPVLAIVRAPDYETALGLINQHEYGNGTAIFTCDGDTARDFTARVQVGMVGVNVPIPVPMAFHSFGGWKRSIFGPLNMHGPDGVRFYTRMKTVTARWPQSLRAGAEFSMPTMK
>NZ_CP017143.1|WP_005319956.1|1129002_1129758_+|glutamine-amidotransferase
MRLGILDCDRLDPDLADHFGPVYSEMFIKGFRALAPELEFRIWSALDGELPDDLQECDAWLITGSRHDAYSDLPWIQALRAWIRLAHDADVKLAGVCFGHQVIAQALGGEVVKSTKGWGLGVSVHPMLATGSWMQPGLDQIRILASHQDQVALLPPGATRLAGNDFCPNFMFLQGDHIVAIQGHPEFSVEYNRALIERRRDFLSDDRYQSSLSSLEGEVDSATMMQWLLQFLGILPGSERAAGGITAGERA
>NZ_CP017143.1|WP_005319953.1|1129754_1130870_+|alanine-dehydrogenase
MIIGVPKEIKNHEYRVGMTPAGVQELAARGHKVLVQQQGGEAIGLSDAEYQAAGAELVASAAEIFARAEMIVKVKEPQPEECELLRPGQLLFTYLHLAPDPVQTQLLVHSGAVAIAYETVTDERGGLPLLAPMSEVAGRMAIQAGAHSLEKAQGGNGTLLGGVPAVAPAKVVVLGGGVVGVNSARMALGLGADVTILDRSLPRLRELDSLYGPALKTLYSTRTNIEACIAQADLVIGAVLIPGAAAPRLLTRDMLKLMRKGSVLVDVAIDQGGCFETSHPTTHEEPTYVVDGIIHYCVANMPGGVARTSTFALTNATLPFVLALADKGYAQALKDDKHLRAGLNVFKGKVTQAAVAQALGYEYVSAESVLG
>NZ_CP017143.1|WP_005319951.1|1130986_1131826_+|carbohydrate-kinase
MSRILLLANLNCDHVLSLSEPLVAGARLQYVDQGRRLGGGAANTGIGLVWAGHEVTIASRIGLDEAGDWLLEQAAGYGLDCSHVERFGGETGELLILVDSTGERTILRRPRRPDLPGDLPVEGVDCLYVNYPGTAITGYMRQMLGKSFVVAQYPKGGQARRPCHVLVASRSDLGEVSAPWLHARQLAGEQLEWLVLTEGKAGAVAIHGEEQIRVAARPVSVVDTTGAGDAFAGGLIHGLARGMAIQDALQCAVDWGAFAVASESSIPSTALKNWLKQPH
>NZ_CP017143.1|WP_005319948.1|1132124_1132577_+|Rrf2-family-transcriptional-regulator
MQLTRFTDYALRTLTFLAVQPGDRLSTITEVADTFAISRNHVVKIVHQLGIKGYIETVRGKHGGIRLGRSAVSINLRDVVMDMEHVLCPVDCKRENCRLSGGCRIQGILRRAMNAFLEVLGEYTLADAVRDPTRLCHLLGIEHDSILAMA
>NZ_CP017143.1|WP_005319946.1|1132678_1133191_-|ferredoxin-type-protein-NapF
MTHFFCRWLTHALGGTRKPDVVCHEARPPWAIEESQYLSLCTRCGECFKACPNGLLKPASQPEYEGTAIAGTPVLDLACGQCSYCGSCARACPTGALDLQWGRQVQTRVQIEASCQARQGFYCLLCEDACPQQAIKATSDGVSVNMAACDGCGACGLACLHGAITLIPQL
>NZ_CP017143.1|WP_085941537.1|1133317_1133545_+|hypothetical-protein
MNELMWLFLWRASLLYIFPLLMWAYCRIKGIEFAELDTGVNSHKWVVLAAYLLYVLLWLLLNRYLELFLRQRSRK
>NZ_CP017143.1|WP_005319939.1|1133541_1134882_+|DNA-recombination-protein-RmuC
MIELATWGPALLAALLALCVGWLAGRRFASAQEQELLLTQERHQALQDRFDELQDERMQGQQKLDQQQTLLIKLTARLKDAEATLRSERLAAAEKLQLQRDGEQRLSQQFENLANRIFEQNSGNFRDLNQNSLDLLLTPLKEQLEGFRRQVGETHAQETAQRHSLKFELERLAELNARMTEEAAALTRALKGDSKQQGNWGEVVLARILSECGLREGHEYHTQVNIELDKGKRYQPDVIVHLPQEKDIIIDAKVSLTAYERWYNTDDALEKAVALKEHVASVRNHIRELGRKDYQQLPGVRTLDYVLMFVAVEPAFLTALEADPSLVRFGLDNNILLVSPTNLMVALRTIENLWRYERQNQNARQIAERAGRLYEKLRLFVEEMQQMGGSLHKAQESYDKAMGRLVNGRGNLIAQVERFRELGVEVTKPLPETLVNRALEREDPAE

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Crispr_ID: NZ_CP017143_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017143_7

1971066-1971178

Orphan

Consensus_repeat	Method
AGAAACAGGGGCCTAGTGCCCCTGTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017143_7

>merge|NZ_CP017143|7|1971066-1971178|CRISPRCasFinder
AGAAACAGGGGCCTAGTGCCCCTGTTTTGTTAGGTTAATCCCCCTGTAAATACAGGGTCTGATGTGCTTGATATGTTAACCCCCCAGAAACAGGGGCCTGGTGCCCCTGTTTT

>NZ_CP017143|7|7|1971066-1971178|CRISPRCasFinder
AGAAACAGGGGCCTAGTGCCCCTGTTTT	GTTAGGTTAATCCCCCTGTAAATACAGGGTCTGATGTGCTTGATATGTTAACCCCCC
AGAAACAGGGGCCTGGTGCCCCTGTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017143.1\|WP_005311635.1\|1981382_1981586_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017143.1\|WP_088814357.1\|1971198_1972314_+\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	unknown	unknown	gnl\|CDD\|184420
NZ_CP017143.1\|WP_042467243.1\|1974817_1975255_+\|HIT-domain-containing-protein	unknown	unknown	gnl\|CDD\|334445
NZ_CP017143.1\|WP_005311630.1\|1977327_1979640_+\|aerobic-respiration-two-component-sensor-histidine-kinase-ArcB	unknown	unknown	gnl\|CDD\|236842
NZ_CP017143.1\|WP_005311605.1\|1961700_1962195_+\|acetolactate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|183365
NZ_CP017143.1\|WP_005311610.1\|1967774_1968239_-\|thioredoxin-dependent-thiol-peroxidase	unknown	unknown	gnl\|CDD\|181857
NZ_CP017143.1\|WP_005311607.1\|1964824_1966027_-\|acetate-kinase	unknown	unknown	gnl\|CDD\|234680
NZ_CP017143.1\|WP_042467238.1\|1959982_1961701_+\|acetolactate-synthase-3-large-subunit	unknown	unknown	gnl\|CDD\|181602
NZ_CP017143.1\|WP_005311626.1\|1975353_1976052_+\|DUF3334-family-protein	unknown	unknown	gnl\|CDD\|314646
NZ_CP017143.1\|WP_017412149.1\|1966830_1967331_-\|YfbU-family-protein	unknown	unknown	gnl\|CDD\|180087
NZ_CP017143.1\|WP_005311611.1\|1968261_1968795_-\|glycine-cleavage-system-transcriptional-repressor	unknown	unknown	gnl\|CDD\|236935
NZ_CP017143.1\|WP_096071887.1\|1962600_1964754_-\|phosphate-acetyltransferase	unknown	unknown	gnl\|CDD\|235537
NZ_CP017143.1\|WP_005311601.1\|1959439_1959592_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017143.1\|WP_011899053.1\|1966329_1966770_+\|DUF412-domain-containing-protein	unknown	unknown	gnl\|CDD\|377248
NZ_CP017143.1\|WP_005311623.1\|1974113_1974746_+\|DUF2057-domain-containing-protein	unknown	unknown	gnl\|CDD\|378258
NZ_CP017143.1\|WP_005311632.1\|1979695_1981060_+\|dGTPase	unknown	unknown	gnl\|CDD\|235320
NZ_CP017143.1\|WP_085941500.1\|1973142_1974042_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP017143.1\|WP_034283655.1\|1976121_1977120_-\|DUF2860-domain-containing-protein	unknown	unknown	gnl\|CDD\|371359
NZ_CP017143.1\|WP_042467242.1\|1972442_1973045_-\|short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|236057
NZ_CP017143.1\|WP_005311612.1\|1969062_1969950_+\|4-hydroxy-tetrahydrodipicolinate-synthase	unknown	unknown	gnl\|CDD\|235107

Protein	Function_ID	Function_description	E-value
NZ_CP017143.1\|WP_088814357.1\|1971198_1972314_+\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	gnl\|CDD\|184420	PRK13960, PRK13960, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional.	0
NZ_CP017143.1\|WP_042467243.1\|1974817_1975255_+\|HIT-domain-containing-protein	gnl\|CDD\|334445	pfam01230, HIT, HIT domain.	1.54167e-19
NZ_CP017143.1\|WP_005311630.1\|1977327_1979640_+\|aerobic-respiration-two-component-sensor-histidine-kinase-ArcB	gnl\|CDD\|236842	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional.	0
NZ_CP017143.1\|WP_005311605.1\|1961700_1962195_+\|acetolactate-synthase-small-subunit	gnl\|CDD\|183365	PRK11895, ilvH, acetolactate synthase 3 regulatory subunit; Reviewed.	6.20447e-96
NZ_CP017143.1\|WP_005311610.1\|1967774_1968239_-\|thioredoxin-dependent-thiol-peroxidase	gnl\|CDD\|181857	PRK09437, bcp, thioredoxin-dependent thiol peroxidase; Reviewed.	6.82136e-106
NZ_CP017143.1\|WP_005311607.1\|1964824_1966027_-\|acetate-kinase	gnl\|CDD\|234680	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed.	0
NZ_CP017143.1\|WP_042467238.1\|1959982_1961701_+\|acetolactate-synthase-3-large-subunit	gnl\|CDD\|181602	PRK08979, PRK08979, acetolactate synthase 3 large subunit.	0
NZ_CP017143.1\|WP_005311626.1\|1975353_1976052_+\|DUF3334-family-protein	gnl\|CDD\|314646	pfam11813, DUF3334, Protein of unknown function (DUF3334). This family of proteins are functionally uncharacterized. This family is only found in bacteria. Proteins in this family are typically between 227 to 238 amino acids in length.	1.73798e-148
NZ_CP017143.1\|WP_017412149.1\|1966830_1967331_-\|YfbU-family-protein	gnl\|CDD\|180087	PRK05445, PRK05445, YfbU family protein.	3.22814e-85
NZ_CP017143.1\|WP_005311611.1\|1968261_1968795_-\|glycine-cleavage-system-transcriptional-repressor	gnl\|CDD\|236935	PRK11589, gcvR, glycine cleavage system transcriptional repressor; Provisional.	8.05624e-47
NZ_CP017143.1\|WP_096071887.1\|1962600_1964754_-\|phosphate-acetyltransferase	gnl\|CDD\|235537	PRK05632, PRK05632, phosphate acetyltransferase; Reviewed.	0
NZ_CP017143.1\|WP_011899053.1\|1966329_1966770_+\|DUF412-domain-containing-protein	gnl\|CDD\|377248	pfam04217, DUF412, Protein of unknown function, DUF412. This family consists of bacterial proteins, including yfbV from E. coli. YfbV is a membrane protien involved in insulating the chromosome from the TerR macrodomain.	2.85575e-63
NZ_CP017143.1\|WP_005311623.1\|1974113_1974746_+\|DUF2057-domain-containing-protein	gnl\|CDD\|378258	pfam09829, DUF2057, Uncharacterized protein conserved in bacteria (DUF2057). This domain, found in various prokaryotic proteins, has no known function.	1.10247e-39
NZ_CP017143.1\|WP_005311632.1\|1979695_1981060_+\|dGTPase	gnl\|CDD\|235320	PRK04926, dgt, deoxyguanosinetriphosphate triphosphohydrolase; Provisional.	0
NZ_CP017143.1\|WP_085941500.1\|1973142_1974042_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.24107e-55
NZ_CP017143.1\|WP_034283655.1\|1976121_1977120_-\|DUF2860-domain-containing-protein	gnl\|CDD\|371359	pfam11059, DUF2860, Protein of unknown function (DUF2860). This bacterial family of proteins has no known function.	2.97984e-69
NZ_CP017143.1\|WP_042467242.1\|1972442_1973045_-\|short-chain-dehydrogenase	gnl\|CDD\|236057	PRK07578, PRK07578, short chain dehydrogenase; Provisional.	3.90635e-124
NZ_CP017143.1\|WP_005311612.1\|1969062_1969950_+\|4-hydroxy-tetrahydrodipicolinate-synthase	gnl\|CDD\|235107	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional.	3.47266e-164

>NZ_CP017143.1|WP_005311612.1|1969062_1969950_+|4-hydroxy-tetrahydrodipicolinate-synthase
MLRGSLVALVTPMLASGEVDWASLATLVDYHVSAGTAAIVAVGTTGESVTLSEQEHIAVVEKTVELAAGRIPVIAGCGSNNTAHAIALAKRFAETGVVAGLSVTPYYNKPTQEGLYRHYCAIAEASGLPQILYNVPSRTCCDLKPETVARLARVPGIIGLKEATGDLSRTPLLRELCGEEFALYSGDDASGCDFMLQGGDGVISVTTNIAAAQMADMCRAALAGDAGQAHDINNRLMPLHQTLFCEPSPIPVKWACARLGLIATATLRLPLTDLTPEGEQAMTRALTTAELMASV
>NZ_CP017143.1|WP_005311611.1|1968261_1968795_-|glycine-cleavage-system-transcriptional-repressor
MTHYLVVTAIGTDRPGIVNEVTRHVSGCGCNIVDSRLGIFGNEFTFIMLLSGDWNSLMQLEISLPLRSQEWELITMMKRTERHHSLQYDISANAEILIRDQPGIVSQCTQFFSDHGWDIQAMQTMTLEQQPYNLLKASFQLNLAKQGEAAGSDTAFAGFCRELGAESFEFIVNNKHA
>NZ_CP017143.1|WP_005311610.1|1967774_1968239_-|thioredoxin-dependent-thiol-peroxidase
MQPLSAGTLAPDFSLSDQDGNPVRLSDLRGKKVLIYFYPKAMTPGCTTQACGLRDVNSELAALNVVVLGISPDPAKHLKKFEERDSLNFRLLADEDHAVADAFGVWGPKKFMGKEYDGIHRLSFLIDEEGKIAHRFDKFKTSDHHQVVLDLIKG
>NZ_CP017143.1|WP_017412149.1|1966830_1967331_-|YfbU-family-protein
MNMSHTERLILSNQYEILAKLNPEKAASYQRASTIIARGYCLQILELEKSFGHLDLATCQEVIDTLELHHALAISWGNLDGADQSEITASRLEFNGYSRSQERELADYVCFLLEVDKRFPELKCPCDELSSDIAMRDKYQRMLTVWRQCPRQYKLSIQEIRKVLAA
>NZ_CP017143.1|WP_011899053.1|1966329_1966770_+|DUF412-domain-containing-protein
MSMNIFGTKLQQGRHYMTLWPRRPELNSMFPENRVIKATEFALKIIPALAVLSVMLQFQLGELHYWPSVMTSVLFLLSLPLQGYYWLGQRADTRLPPSLASWYREINGKMNEQGSHRQLVAQPRYEELADTLNAAFKQLDKSFLYE
>NZ_CP017143.1|WP_005311607.1|1964824_1966027_-|acetate-kinase
MSKLVLVLNCGSSSLKFAVIDATTGDDLLSGLAECFNLDDARIKWKLNGEKGSADLGAGAAHQEALDYIVNKILPLNPELSQNLIAIGHRVVHGGERFTSSVVICDDVIAGIEAAVPYAPLHNPAHLIGIREARRIFPALADKNVAVFDTAFHQTMPEEAFLYALPYKLYKENGIRRYGAHGTSHYYISLEAAKQLNKPVDELNIINCHLGNGGSVCAIKNGKSVDTSMGLTPLEGLVMGTRSGDLDPAIIFFLHDKLGMSVADINTMLTKESGLQGLTEVTSDCRFVEDNYDSKEEAKRAMDVYCYRLAKYIGAYAAAMDGRLDAVVFTGGIGENSAPIREITLNKLGLLGFDVDHDANLAARFGKGGEITKAGSTKALVIPTNEEWVIAHDALELVGA
>NZ_CP017143.1|WP_096071887.1|1962600_1964754_-|phosphate-acetyltransferase
MARTIMLIPVGTGVGVTSVSLGVVRAMERHGVNVSFFKPVAQPRPGETGTERSTAVIRAAANINPPEPFALSYAENMITSSNTDILLEEIVARFEEHVKASGAEVLVIEGIVPTDKQPFANKLNYDVAKALDADMVFVTHPGNDSSQKLKERIELACSNFGGVNNPRIVGCVINKVGAPVDEHGVTRPDLTEMFEAHHHASEAAHNLEVLQVFGKSPLRILGCIPWNTQLIAPRAKDLAKHLAAKILHKGELDSRRLQTVTFCARSIHNMVEHFRPGSLLVTSGDRSDVIVSACLSAMNGVKLGALLLTGNYHPEPQVMALCQQAMATGLPIMITGTNTWQTAVSLQNFNVDIPEDDRERIELVQDYVAGHIDKHWIESLSAKSTRSRRLSPPAFRYQLTELARQANKRVVLPEGEEPRTIKAASICAERGIARPVLLGNPEEIRRVAEQQGVVLTDRVEIIDPLEVRERYVPRLVELRKNKGMTEVVAREQLEDNVVLGTMMLERGEVDGLVSGAVHTTANTIRPPMQIIKTAPGSSLISSIFFMLLPDQVLVYGDCAINPDPTAEQLAEIAIQSADSAAAFGIEPRVAMISYSTGTSGAGADVEKVREATELAKAKRPDLIIDGPLQYDAAIMENVAKSKAPNSPVAGKATVFVFPDLNTGNTTYKAVQRSADLVSIGPMLQGMRKPVNDLSRGALVDDIVYTIALTGIQAAQAE
>NZ_CP017143.1|WP_005311605.1|1961700_1962195_+|acetolactate-synthase-small-subunit
MRHIISVLLENESGALSRVVGLFSQRGYNIETLTVAPTEDPTLSRMTIVTMGDERVLEQIQKQLHKLVDVLKVCDLSEGEHIEREIALVKARAAGGARDELKRLADIFRGQIVDVTPEQYTVQLVGTSEKLDAFIKTAAQTNEIIEVVRSGVCGISRADKALRP
>NZ_CP017143.1|WP_042467238.1|1959982_1961701_+|acetolactate-synthase-3-large-subunit
MEMLSGAQMVVRALEDQGVEHVFGYPGGSVLDIYDALFENGKMEHVLVRHEQAAVHMADGYARSTGKVGTVLVTSGPGATNCITGIATAYMDSIPLVILSGQVPTSMIGEDAFQETDMIGISRPVVKHSFLCKKASDIPDAIKKAYYIAASGRPGPVVVDLPKDVQNPKEKFPYQYPETVSLRSYNPTKAGHKGQIKRAAKLLVDAQRPVMYVGGGAINANADHLVTKLAELLNLPVTTTLMGLGAFSGTHPQFVGMLGMHGTFEANKTMHNADLIFAVGARFDDRVTNNVAKFCPNATIVHIDIDPTSISKTVQAHVPIVGSVETVLEQMLEVIRECGFDNDKQALADWWSQIAQWRSRNCLAYETHPTLIKPQQVIETLYKVTKGEAFVASDVGQHQMFAALYYPFTKPRQWINSGGLGTMGFGIPAAMGAQFANPGAVVCCVTGDGSVQMNIQELSTCMQYGVPIKIISINNRALGMVKQWQKMFYGGRHSHSYMESLPDFVKLAEAYGHVGIAVSDPAELESAMEKAFAIKDRLVFMDISVDPDEHVYPMQIKFGAMDEMWLSKTERT
>NZ_CP017143.1|WP_005311601.1|1959439_1959592_+|hypothetical-protein
MRFTNENGDTMTLADNLTLHELLDMGVSISVCEETDPDQQIWLAESEDEQ
>NZ_CP017143.1|WP_088814357.1|1971198_1972314_+|phosphoribosylaminoimidazolesuccinocarboxamide-synthase
MLLAMSLADQVLAVNDDLPIRTDKPVHSGKVRSVYWLTPEDSARLIKEKGYDVPADAPLALMVISDRISAFDCIWQGVDGLNGVPGKGAALNAISSHWFKLFKEKGLADSHILDIPHPFVWIVQKARPVMIEAIARQCITGSMWRAYKDGEREFCGITLPEGLKKDQKLPEILITPSTKGVLTGLDGVPEADDVNVSRADIERHYQGFNFSKPADIDRYEVLLKEGFNVISDALASLDQIFVDTKFEFGYVQDAAGNEKLIYMDEVGTPDSSRIWDGAALRDGQIVEKSKEGFRQWLLNHFPDPDILLNKNRMPERFALAKGNKLPTEVMMDISNTYVGIAEKIIGHPLVRSANPKQEIIEVLRDQYGLID
>NZ_CP017143.1|WP_042467242.1|1972442_1973045_-|short-chain-dehydrogenase
MKIVIVGASGTVGSAVSELLAKEHQVIRVGHSRGDATVDMRDPASIKALFALVGQFDALVVASGSVAFNGLTEMTDEQWQVGLQSKLMGQINLTRAAIPYLNDKGSITLISGILSEEPINWGVSATTINGAIEHFVKAAACELPKGLRINVVSPTVLTESMDKYADFFPGFVPVPAAKVALAYQKSVLGVQTGQVFKVNG
>NZ_CP017143.1|WP_085941500.1|1973142_1974042_+|LysR-family-transcriptional-regulator
MDIAHLASFYEVVQRGSFSAAADVLGVSKGMLSRHVSALEAALNAQLLQRTTRRLSLTEAGKTLYLQTGQIFALVRQAEEDIQALTEEDAGRLRFTCAVSTGDRMVSELLGHFAVLCPGVEVELNFTNAMVDMSQGENDIALRAMSSIPDNLVALPLGQLKDVVVASPALLVREGIPATPYELSSRPCLLQGSNPAWEQWHFRRGEEEAHILVQGKVRANHYSTVLQLARAGMGYAKCPLMLVEPALAAGELVTVLDGWQSGLHQLHVLHAQQRRVPRKIRLFKQVLAQWFAERPRYLL
>NZ_CP017143.1|WP_005311623.1|1974113_1974746_+|DUF2057-domain-containing-protein
MKGYQKWSGLTLLWSALGMSTAQAAVEVVVPPDFQILAVSAGKLQDEQHATLADGEQQLLVRYEGVIPSRNSSENDRQVRSDPQVVRYQASNQRLTLVAQQPADEQAMVAYAKAPVVTLQANGQALDTQQDALMTSGMLIGMDWRARLEEYNRSGGKAALTMAGVATTVAAGKAVPAVATSELEGRLQQLFLQADPELRKRFVGWAVPRL
>NZ_CP017143.1|WP_042467243.1|1974817_1975255_+|HIT-domain-containing-protein
MFELHTRLQADTQLLGDLPLCRVLLAKDSQYPWLILVPRVDNLREIHHLVPAQQQQLMQESCAVATLMEQALSPDKINIGALGNLVPQLHLHHVARFTTDKAWPGPIWGAHPALPYDPQALRTQADSWRARLAHLAGFIPLCVDN
>NZ_CP017143.1|WP_005311626.1|1975353_1976052_+|DUF3334-family-protein
MIVTRADNDAVLTTEDVLLSLCHSVTGVLSAATQSQVRFSGMVQRISKTCLKPDIGCFVLFDGGFSGLVVINFSASAAMELYESYMLSMGLSKEDLAISHTSDEVSNVMGELMNQIVGSFTVKVGRDLQTHITQNQPKMLALNKQVMLSVDTNLDNPEARRVTFFTSRNNIFYLELAMDRTEFIRIHSDGMDEEELDPDALIAQTKLAASKPTPVAAKVANEHDDLLDSLGI
>NZ_CP017143.1|WP_034283655.1|1976121_1977120_-|DUF2860-domain-containing-protein
MRTLTLLSLGLLAANAAHADLGEIPKQSGWSGFLLGGVNAVSYKSNFYAGDDSNSRINDLGSPDSESGLTPLINADIRYTFADTRTQVFLGNLIQDAIRFDFTQQLGLRQEMGDKGIVATSLVFNAMPVELWSDPFATNVDRSSTDVKSKGVRFTWDKIWGSNFHGSLTSREVDLDEERSGQQYDLTHGTHYASMLDRNGKVHDMEISYQWHFGGNQLLEPAILYKQARLDGSAESFKNTGLQLTYAKRGPQWSIVSNVYAGKRNYDEANPIFGQSADANEFAINGTFFWHSLFGVKDLAATFTAAYSTANSDISFYDSQATRVSTGLLYNF
>NZ_CP017143.1|WP_005311630.1|1977327_1979640_+|aerobic-respiration-two-component-sensor-histidine-kinase-ArcB
MKQIKSWAQYYVDLMTKLGLVRFSMFLATGIIVLAVSIQMGVTLFLRGTVDIVDLVRSVFFGLLVTPWAVYFLSIVVDQLEDSRQRLTRMVRKLQDMRERDLELNSQLQENISRLNAQIAETNRAETLRQQAIEDLENEVFQREKAQLHLGERTALLRSFIDCSPDLVYYRNEDEQFSGCNRAMEELTGRVEAELIGLTPFDVYKQEIANKVVETDKQVFTSNEPLTYEQWLEYPDGRKAYFELRKVPFFDRFGKRLGLLGFGRDITERKQYQDKLEKASRDKTTFISTISHELRTPLNGIVGLSRMLMDTPLDPRQHQQLKTIHLSAVTLGNIFNDIIDLDKLDRRRLEIAPTPIDLPAFLDELETLSRIQAEQKGLYLHFDRDGDMPQFVMADGTRLRQVLWNLVGNAVKFTDEGGVTVRCLSHAADVPGKLALHFEVEDTGVGIPRAQQEKIFAMYYQVQGKKHATGTGIGLAVSRQLVQAMGGQLYVDSDPGEGSCFTAELEVDCVEPQVATSEQEMPTLDILLVEDVELNVTVACALLNKLGHEVKVARDGAQALAMANPDDFDLILLDIQLPDMTGFDVAAQLLARYGDSLPPMVALTANATGDRQYYRDRGLQDVISKPLGSRAVREVIGHLFADLADDEADEQADAGNQDALLDLAFLTDYADTVGKPVLLSSVELFEKMMPDYMAVLDSNMIAKDQAGVVEEAHKIKGAAGSIGLRRLQQLAQLIQSPDHPAWWENVEDWIESLRRECPGDIARLKRWLLS
>NZ_CP017143.1|WP_005311632.1|1979695_1981060_+|dGTPase
MYQRLIPSLRSHPWGEEELLEATELDRARIVQAAPVRRLQQKTQVFPLDVKASVRSRLTHSLEVQETGRQISRRILAALPAGAVCEGAFINLVEMSCLLHDVGNPPFGHFGEQVMSQWLTQELDTLFAAALGQAPSPQWAELRQDLLVFDGNAQSLRLVHSLHELNLTLGQLAALCKYPQQPQPGLHYGQHHGWTSKRGIFFSEQPLYRSLSQSLGLAPGCRHPLVYIMEAADDISYCIADLEDAVDRRILSLSELQQALRLADAGSYMAVLLADATASDRGFFPHFRQHLTHDLIALAAHTYVSEHEIILSGAYPQALLHGQAPAAMVLDTLKQVAREQVFMRPEVEALELEGYAALRGVLSTYACLLALPASQFERLLAGQGGSELFFARRLFHRLSARHLKAYRLAVASRDPRFDSGAEQEWYYRVRLLLDYVSGMTDTYALEEFRLLSGI
>NZ_CP017143.1|WP_005311635.1|1981382_1981586_+|hypothetical-protein
MSIELALLRTVESLVQKRITRLERRISYLHLSPALLKDIGLEGQNVQIAHIREQEYQTGFRLGNRIT

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Crispr_ID: NZ_CP017143_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017143_8

2506427-2506550

Orphan

Consensus_repeat	Method
TGTTGCCGCGGACGATTACGCTTCGCTAATCGACCCTACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017143_8

>merge|NZ_CP017143|8|2506427-2506550|CRISPRCasFinder
TGTTGCCGCGGACGATTACGCTTCGCTAATCGACCCTACACGCTTATTGGCACCCTACCTGTCTCCCGCAAGGGGAGAGGGGATTGTTGCCGCGGACGATTACGCTCCGCTAATCGACCCTACA

>NZ_CP017143|8|8|2506427-2506550|CRISPRCasFinder
TGTTGCCGCGGACGATTACGCTTCGCTAATCGACCCTACA	CGCTTATTGGCACCCTACCTGTCTCCCGCAAGGGGAGAGGGGAT
TGTTGCCGCGGACGATTACGCTCCGCTAATCGACCCTACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017143.1\|WP_017412250.1\|2496729_2497698_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176163
NZ_CP017143.1\|WP_042467317.1\|2500133_2500844_-\|DUF4269-domain-containing-protein	unknown	unknown	gnl\|CDD\|379463
NZ_CP017143.1\|WP_042467985.1\|2507673_2508687_+\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_CP017143.1\|WP_088814123.1\|2504866_2505784_-\|IS5-like-element-ISAs4-family-transposase	unknown	unknown	gnl\|CDD\|290455
NZ_CP017143.1\|WP_005314583.1\|2514573_2514801_+\|ferrous-iron-transport-protein-A	unknown	unknown	gnl\|CDD\|377199
NZ_CP017143.1\|WP_005314572.1\|2506668_2506977_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017143.1\|WP_005314579.1\|2513322_2513880_-\|TMEM165/GDT1-family-protein	unknown	unknown	gnl\|CDD\|225030
NZ_CP017143.1\|WP_005314578.1\|2512131_2513070_-\|DUF2157-domain-containing-protein	unknown	unknown	gnl\|CDD\|378311
NZ_CP017143.1\|WP_017413027.1\|2499043_2499292_-\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	unknown	unknown	gnl\|CDD\|182475
NZ_CP017143.1\|WP_042467323.1\|2501522_2502899_+\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
NZ_CP017143.1\|WP_005314576.1\|2510587_2511091_-\|GDYXXLXY-domain-containing-protein	unknown	unknown	gnl\|CDD\|379571
NZ_CP017143.1\|WP_034282846.1\|2508905_2509652_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270422
NZ_CP017143.1\|WP_005314534.1\|2498732_2498909_-\|DUF3606-domain-containing-protein	unknown	unknown	gnl\|CDD\|371985
NZ_CP017143.1\|WP_011899080.1\|2503136_2504168_+\|IS630-family-transposase	unknown	unknown	gnl\|CDD\|315923
NZ_CP017143.1\|WP_005314532.1\|2497805_2498579_+\|glucose-1-dehydrogenase	unknown	unknown	gnl\|CDD\|180440
NZ_CP017143.1\|WP_005314539.1\|2500833_2501331_-\|peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|182734
NZ_CP017143.1\|WP_011898588.1\|2499372_2500137_-\|UDP-2,3-diacylglucosamine-diphosphatase	unknown	unknown	gnl\|CDD\|235420
NZ_CP017143.1\|WP_005314577.1\|2511087_2512095_-\|DUF4401-domain-containing-protein	unknown	unknown	gnl\|CDD\|379574
NZ_CP017143.1\|WP_085941442.1\|2514124_2514499_-\|stress-response-translation-initiation-inhibitor-YciH	unknown	unknown	gnl\|CDD\|181613
NZ_CP017143.1\|WP_017412979.1\|2509767_2510514_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270422

Protein	Function_ID	Function_description	E-value
NZ_CP017143.1\|WP_017412250.1\|2496729_2497698_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176163	cd08474, PBP2_CrgA_like_5, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 5. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	6.14212e-100
NZ_CP017143.1\|WP_042467317.1\|2500133_2500844_-\|DUF4269-domain-containing-protein	gnl\|CDD\|379463	pfam14091, DUF4269, Domain of unknown function (DUF4269). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 176 and 187 amino acids in length. There is a conserved KTE sequence motif.	9.87483e-35
NZ_CP017143.1\|WP_005314577.1\|2511087_2512095_-\|DUF4401-domain-containing-protein	gnl\|CDD\|379574	pfam14351, DUF4401, Domain of unknown function (DUF4401). This family of proteins is found in bacteria. Proteins in this family are typically between 357 and 735 amino acids in length. The family is found in association with pfam09925. There is a single completely conserved residue K that may be functionally important.	2.25952e-33
NZ_CP017143.1\|WP_088814123.1\|2504866_2505784_-\|IS5-like-element-ISAs4-family-transposase	gnl\|CDD\|290455	pfam13737, DDE_Tnp_1_5, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	2.37275e-48
NZ_CP017143.1\|WP_005314583.1\|2514573_2514801_+\|ferrous-iron-transport-protein-A	gnl\|CDD\|377199	pfam04023, FeoA, FeoA domain. This family includes FeoA a small protein, probably involved in Fe2+ transport. This presumed short domain is also found at the C-terminus of a variety of metal dependent transcriptional regulators. This suggests that this domain may be metal-binding. In most cases this is likely to be either iron or manganese.	2.19469e-16
NZ_CP017143.1\|WP_034282846.1\|2508905_2509652_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270422	cd13704, PBP2_HisK, The periplasmic sensor domain of histidine kinase receptors; the type 2 periplasmic binding fold protein. This subfamily includes the periplasmic sensor domain of the histidine kinase receptors (HisK) which are elements of the two-component signal transduction systems commonly found in bacteria and lower eukaryotes. Typically, the two-component system consists of a membrane-spanning histidine kinase sensor and a cytoplasmic response regulator. The two-component systems serve as a stimulus-response coupling mechanism to enable microorganisms to sense and respond to changes in environmental conditions. Extracellular stimuli such as small molecule ligands and ions are detected by the N-terminal periplasmic sensing domain of the sensor kinase receptor, which regulate the catalytic activity of the cytoplasmic kinase domain and promote ATP-dependent autophosphorylation of a conserved histidine residue. The phosphate is then transferred to a conserved aspartate in the response regulator through a phospho-transfer mechanism, and the activity of the response regulator is in turn regulated. The sensor domain belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space through their function as an initial high-affinity binding component. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.18127e-25
NZ_CP017143.1\|WP_005314579.1\|2513322_2513880_-\|TMEM165/GDT1-family-protein	gnl\|CDD\|225030	COG2119, COG2119, Predicted membrane protein [Function unknown].	2.56269e-51
NZ_CP017143.1\|WP_005314578.1\|2512131_2513070_-\|DUF2157-domain-containing-protein	gnl\|CDD\|378311	pfam09925, DUF2157, Predicted membrane protein (DUF2157). This domain, found in various hypothetical prokaryotic proteins, has no known function.	4.01482e-24
NZ_CP017143.1\|WP_017413027.1\|2499043_2499292_-\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	gnl\|CDD\|182475	PRK10457, PRK10457, hypothetical protein; Provisional.	8.30873e-23
NZ_CP017143.1\|WP_042467323.1\|2501522_2502899_+\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
NZ_CP017143.1\|WP_005314576.1\|2510587_2511091_-\|GDYXXLXY-domain-containing-protein	gnl\|CDD\|379571	pfam14345, GDYXXLXY, GDYXXLXY protein. This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 171 and 199 amino acids in length. It contains a conserved GDYXXLXY motif.	4.47387e-37
NZ_CP017143.1\|WP_005314534.1\|2498732_2498909_-\|DUF3606-domain-containing-protein	gnl\|CDD\|371985	pfam12244, DUF3606, Protein of unknown function (DUF3606). This family of proteins is found in bacteria. Proteins in this family are typically between 58 and 85 amino acids in length. There is a single completely conserved residue G that may be functionally important.	3.56969e-16
NZ_CP017143.1\|WP_042467985.1\|2507673_2508687_+\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	6.40634e-48
NZ_CP017143.1\|WP_005314532.1\|2497805_2498579_+\|glucose-1-dehydrogenase	gnl\|CDD\|180440	PRK06172, PRK06172, SDR family oxidoreductase.	1.9616e-83
NZ_CP017143.1\|WP_005314539.1\|2500833_2501331_-\|peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|182734	PRK10791, PRK10791, peptidylprolyl isomerase B.	2.2658e-90
NZ_CP017143.1\|WP_011898588.1\|2499372_2500137_-\|UDP-2,3-diacylglucosamine-diphosphatase	gnl\|CDD\|235420	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional.	3.88382e-145
NZ_CP017143.1\|WP_011899080.1\|2503136_2504168_+\|IS630-family-transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	9.20597e-16
NZ_CP017143.1\|WP_085941442.1\|2514124_2514499_-\|stress-response-translation-initiation-inhibitor-YciH	gnl\|CDD\|181613	PRK09019, PRK09019, stress response translation initiation inhibitor YciH.	4.42658e-37
NZ_CP017143.1\|WP_017412979.1\|2509767_2510514_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270422	cd13704, PBP2_HisK, The periplasmic sensor domain of histidine kinase receptors; the type 2 periplasmic binding fold protein. This subfamily includes the periplasmic sensor domain of the histidine kinase receptors (HisK) which are elements of the two-component signal transduction systems commonly found in bacteria and lower eukaryotes. Typically, the two-component system consists of a membrane-spanning histidine kinase sensor and a cytoplasmic response regulator. The two-component systems serve as a stimulus-response coupling mechanism to enable microorganisms to sense and respond to changes in environmental conditions. Extracellular stimuli such as small molecule ligands and ions are detected by the N-terminal periplasmic sensing domain of the sensor kinase receptor, which regulate the catalytic activity of the cytoplasmic kinase domain and promote ATP-dependent autophosphorylation of a conserved histidine residue. The phosphate is then transferred to a conserved aspartate in the response regulator through a phospho-transfer mechanism, and the activity of the response regulator is in turn regulated. The sensor domain belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space through their function as an initial high-affinity binding component. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.11776e-28

>NZ_CP017143.1|WP_088814123.1|2504866_2505784_-|IS5-like-element-ISAs4-family-transposase
MGKALHPITNWPQYNRSLINRGSLTFWVDAEAMDNWFHQDHHGKRGRSQLYTDQSICTFLMLKGIFSLTLRATQGLLDSLFELMNVPLCAPDYSCVSKRARTVKVAYRQPPKGRITDLVIDSTGLKVFGEGEWKVRKHGAEKRRVWRKLHLAVDPVTHDIVAAEVSLENVHDAEVLPTLLNPLRRKLGRVYADGAYDSKASHRLIARKGATACIPPRKNAGLWKKGHPRNEAVQVMSKEGLAHWKKISGYHRRSLAETAMFRFKQLMAGQITLRKYNGQVGEVMAYVSAINKLNTLGLPVRKPRV
>NZ_CP017143.1|WP_011899080.1|2503136_2504168_+|IS630-family-transposase
MPILPPLPRPQRRRIHKIIHATRDKGHARRLMAILLLHEGRTVTDVHHLTGAARSTIGRWLRWYRDEGIDALEALPAGRAPVLPIAKMVTLLVLLMQFSPQDFGYQRSRWCTELLAIKINRLTGLNVAASTLRRWLPRMGIVWRRPVPTLRIKDPAYQEKMANIDAALARCNADNPVFYEDEVDIDLNPKLGADWMFRAQQKRVVTPGQNAKHYLAGVLHAGNGRVLYVSGIKKNSSLFIAMLEKLRHHYRRAKTITLILDNYIIHKSKQTERWLKKNPKFCLVFQPVYSPWVNHIERLWHKLHETITRNHQCRGMANLLARVKYFMDTVSPFPGNGYGTAKV
>NZ_CP017143.1|WP_042467323.1|2501522_2502899_+|cysteine--tRNA-ligase
MLKIYNTLTRQKEEFKPIHPGKVGMYVCGVTIYDHCHIGHGRTFVAFDVVARYLRYCGYQLNYVRNVTDVDDKIIKRAAETNVTCDDLTERLIGDMHQDFDALGMVRPDVEPRATQHISEIIELVESLIAQDHAYVADNGDVMFIVDSYADYGKLSGQDLEQLQAGARVGVVDAKRNPLDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGNHFDIHGGGSDLQFPHHENEIAQSCCAHGGDYVNTWMHSGMVMVDKEKMSKSLGNFFTIRDVLAHYDAESVRYFLMSGHYRSQLNYSEDNLKQARAALERMYTALRDLPVAAAAGGDEQVARFVDAMDDDFNTPEAYSALFDLVREINRQKAEDMSVAAGLGARLRELGAVLGILQQDPDAFLKGDEADEEVAEIERLIAERNQARADKNWAAADAARARLTEMGIVLEDSAGKTCWRRA
>NZ_CP017143.1|WP_005314539.1|2500833_2501331_-|peptidyl-prolyl-cis-trans-isomerase
MVTLHTNHGDITLTLNAEKAPETVANFLQYCRDGHYDNTIFHRVIDGFMIQGGGYAPGFEEKETRAPIKNEAANGLSNKVGTVAMARTMEPHSASAQFFINVSNNDFLDFKSATTQGFGYCVFGEVTAGMDVVNKIKAVKTGNAGRMHQDVPVEDVVITKVTLAD
>NZ_CP017143.1|WP_042467317.1|2500133_2500844_-|DUF4269-domain-containing-protein
MQTDLCLLRDELTAAPAAVFPSARLTAGPNWRRLDYLARGNPRQRAAHALLNDTPLWGELQSLCLDVALVSTLAIGLDRPGSDLDILCQHSDPAALADLLAQRQWQSRALGSDIWLLEQTLIDGEGTPWPIELYVTPARVDTLNGWRHLSLMAALIEHFGHDFYQTLRTLRLQQGLKGEAAICRLLKLPGDPYQALLTLEGRDLDQLDWQPQAQAPSAQPATFSSHPVIRAPCTPS
>NZ_CP017143.1|WP_011898588.1|2499372_2500137_-|UDP-2,3-diacylglucosamine-diphosphatase
MSTLFISDIHLCSDRPDMTAALVRFLERDAPGADALYVLGDLFEFWIGDDDPNPLHHAIADAFAALRQRGVSIYFIHGNRDFLLGRQFAKRSGMTLLADPCVIDLYGERVLLSHGDLLCTLDLGYQKLRRITQLKWLRWLFLRLPLTRRLAIACKMRGQSQMENVQKSQTIMDVTPAAVDALLRQHGCQLLIHGHTHRPAIHDFTLDGQPARRIVLGDWFEQGSVLVCSPGEQRLEQRTLPSLNPAGAHESDNL
>NZ_CP017143.1|WP_017413027.1|2499043_2499292_-|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein
MGFITWIVLGLLVGILAKWIMPGRDGGGFFMTVLLGIIGAMVGGYVGTLLGLGSVTGFNLSSIAIATMGALIVLFVFNKIRS
>NZ_CP017143.1|WP_005314534.1|2498732_2498909_-|DUF3606-domain-containing-protein
MPDNNTLAHPLDAKSINVNDPYEMKLWIKTFECTEVQLKRAVKAVGTSGKAIRKHLKK
>NZ_CP017143.1|WP_005314532.1|2497805_2498579_+|glucose-1-dehydrogenase
MIQSLRLQDSVALVTGGGSGIGRAAALAFVRDGAKVVVAGRRELELLETVDLIRAQGGEALAVPTDVTDSAQVKALIAVTLAHFGRLDAAFNNAGVEGVAPISEMTEVEFDRVIATNLKGVWLSVKYELEAMTAAGCGGAIVNTSSWLTQGASVGSAAYSASKGGLDAMIRALALEAGPHGIRINNVNPGIINTPMAQRMGANEETLKPFVRLTPAGRIGGADDVGDVVAWLCSDEARFITGQSLLVDGGFTIAGLR
>NZ_CP017143.1|WP_017412250.1|2496729_2497698_-|LysR-family-transcriptional-regulator
MGNAVRTNEFGELTAFVAVAEEKSFRKAAARLNLTASTLSHALRALEERLGVRLLNRTTRTVSPTQAGLALLAEIAPAFNVIAHAVEKVNAFRESPQGRVRINTPRIAADMIFLPQLQKFCHQYPDVQLELATNDGFVDIISQGFDAGVRIRSDVQQDMSAVRLTADFHSAVYGSPAYFERHAIPLTPADLQHHLCIGRREITGGSLYRWEFEKDGRQIAVPVSGPVTVDNVSMMTRLALDGIGLVYTAQSPEHDDLVTTGRLIRVLADWSITYPGFFLYYPGHRQLPAALKAVIDCFRLPFLSGTETTSYDTVQISCASVP
>NZ_CP017143.1|WP_005314572.1|2506668_2506977_+|hypothetical-protein
MANRFVSSKNRIVQAGRWLATRGAALFAELSEFQQRIWVVSIVNDTYTDTFIVNEGSFEEPMQWMRRKQYDADMLQRVEAMQRSQVIQFELGDTRHRLMRVK
>NZ_CP017143.1|WP_042467985.1|2507673_2508687_+|GGDEF-domain-containing-protein
MDTILQALSVQVTEARDLESLTRPLLEMLETVTGLESTYLTQIDLEQSAQHILYARNSAALQIPEGGSVDWSDTLCRRALDEGRLYAADVADRWGDSAAARAMGIRTYMSSPVRTSSGSLYGTLCGASAEHKPLVTGSEHLIAFFARLIAEHVEREQLLQQLQQANNELSRQALSDPLTGLPNRRALMLELHRLFSLLKRTGHPLLISFIDLDGFKAINDTHGHDAGDLLLQTMAQQLAGALRSGDLLARVGGDEFVAVGMGPLSGEETVEAAVHCFQRRLFEQSQVQLPLASQVLNYPGASVGVVAVDPASISIDDALRQADACMYAVKRQRRAQS
>NZ_CP017143.1|WP_034282846.1|2508905_2509652_-|transporter-substrate-binding-domain-containing-protein
MKKWIGFAALLFAAITQASQELGKLHYLSEEYKPYNYTDSAGTPTGLAVELLHQVWKKTNTPPQTITIMPWARGYYLLTQKPNVVLFATARTEARDPLFKWACPIGYAEIVLIGLAKNPLTLTKLEDAQQHTIGAVRADVGEQLLLNNGFDEQKIMAANRLPQALKMLTSGRVDLISTNKTTLMDLIASQQLDPAQFKVFWMLSSEQFCFAFSHPVSDELVKEFQNGLTQVLASSEFQQIQHKYFPVP
>NZ_CP017143.1|WP_017412979.1|2509767_2510514_-|transporter-substrate-binding-domain-containing-protein
MRIRLCCCLLLMSCLGTAHAGLTKLEYLTEEYPPYNFSNEAGQPTGLAVDLLQLIWQRSGTAAQPVRILPWARGYYLLTQKPNVVLFSTARTETRSHLFKWACPIGYSEYILLAHKSKPIQLGAVEQMNDYRISAVRADAAEQLLLNRGMDETRIIPANRLSQALRMLVSGRADLLATSKLAGYDAIKALQLNADDFTVAFVLDAEELCYAFSRQVDDDLVKQFQRAMTQALASPEYQALRQRYLPVP
>NZ_CP017143.1|WP_005314576.1|2510587_2511091_-|GDYXXLXY-domain-containing-protein
MRQLALLLTGLAILAGINFTVWRYEAAMTSGEVVLLRLAPVDPRSLMQGDYMRLNYDIARQLGASRYSERTNDSDTLVIRLDEHQVANWAADGKPEQLASNERLLQVRQSDNQWLIGPDAFFFEEGTGEQFEVARYGEFRLQGDGKALLVGLRDEQFKPVGNPRARW
>NZ_CP017143.1|WP_005314577.1|2511087_2512095_-|DUF4401-domain-containing-protein
MADLTPWQRLQQADLVEGEAPRDTQPHWSSRFLLGMVGWVAALFLLFFLFMSFSQLTQDANSALMMGAVLMAIAFGLNRFAQRSDLWDQFVLALALAADAWLLYGLIDQIDLHSAPLWLGLAALSLFIAALFEHWLIRLFHSFAAAILLTLGLACLGLQLLALPLVMMTLTFCWLQAERQPAYHQLYESLTLGLALSLLVLGRLHHPLWSEGASMLDELGLSRLPLWLNPLLCAALLLGVMIRLKLPLLYGLPLVLISAFIPGMGAGALVLVLGFYAGSMGLMTLAGLLLLGFGSLYYYDLGLTLMTKSWLLLGSGALLLGARQLLHVINARRQS
>NZ_CP017143.1|WP_005314578.1|2512131_2513070_-|DUF2157-domain-containing-protein
MHFTSRQTLLDWVRRGRLAQTHLPAALALCDLPPASARWQWLFDRLLLWLGSLCLGAGLVFFVAFNWQELGRVSRLALLELPLLAMLVLLWRKPMTAPPRQALLLAMALNIGALLALVGQTYQTGADPWQLFATWALMLLPLAALGQSPLLWTTSWLLGQLALMLYWRLGLFSFFFGFDEEGLGWCLILLNAALWGALLLAPTRLKLMPAWLPGLAAGLGVTLLTLLALFDAASPWVWPAWLGWLAAAYALWHHRFIAGLAMGCLSLIAVILTALGKWMDPDVDGFLLLSLIAIGLSVAASRWLQQQRRSHA
>NZ_CP017143.1|WP_005314579.1|2513322_2513880_-|TMEM165/GDT1-family-protein
MEALLTSTLSVAIAEIGDKTQLLALLLICRFRKPWPIIAGMLAATLLNHAGAAWLGEFISRWLDPKVMTYLVAGSFIAMAAWILVPDKLDDEESPLDKYGPFMATFVLFFIAEIGDKTQIATVLLAAKYDSLTQVIAGTTLGMMLANVPVVLLGKLGADKLPLKGIRIACAILFAGLGVSTLIFA
>NZ_CP017143.1|WP_085941442.1|2514124_2514499_-|stress-response-translation-initiation-inhibitor-YciH
MSKIKLRLANSQITAMSHDNNSHLVYSTDGGMIKEQTQPQSASPFPQDGTVRIRRETKGRKGAGVITIHGVPAEQQKTIATLLKKKCGTGGGLKEGIIEIQGDKRDLIKTELEKAGFSVKLVGG
>NZ_CP017143.1|WP_005314583.1|2514573_2514801_+|ferrous-iron-transport-protein-A
MVLAQLSPGQSARIKHMNHLERTLRRKLMVMGLLPQTEVLFLRAAPLGDPLQIQCQGICLSMQKSLALQIEVELV

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Crispr_ID: NZ_CP017143_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017143_9

3777785-3777880

Orphan

Consensus_repeat	Method
CAAACATATGCAGCTCCATTGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017143_9

>merge|NZ_CP017143|9|3777785-3777880|CRISPRCasFinder
CAAACATATGCAGCTCCATTGCACATTGAGTGGGCTCGCCCCTCCCAAGCAGGGGCTCCATATTCTTTAAAACCACACATATGCAGCTCCATTGCA

>NZ_CP017143|9|9|3777785-3777880|CRISPRCasFinder
CAAACATATGCAGCTCCATTGCA	CATTGAGTGGGCTCGCCCCTCCCAAGCAGGGGCTCCATATTCTTTAAAAC
CACACATATGCAGCTCCATTGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017143.1\|WP_042468012.1\|3782780_3783260_+\|TlpA-family-protein-disulfide-reductase	unknown	unknown	gnl\|CDD\|239264
NZ_CP017143.1\|WP_005310131.1\|3780272_3781175_+\|lysine-exporter-LysO-family-protein	unknown	unknown	gnl\|CDD\|225287
NZ_CP017143.1\|WP_005310119.1\|3785038_3785272_+\|sulfurtransferase-TusA-family-protein	unknown	unknown	gnl\|CDD\|376492
NZ_CP017143.1\|WP_005310127.1\|3781979_3782375_-\|DUF2069-domain-containing-protein	unknown	unknown	gnl\|CDD\|378269
NZ_CP017143.1\|WP_011898880.1\|3760566_3761526_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017143.1\|WP_088814366.1\|3783455_3784859_-\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|227122
NZ_CP017143.1\|WP_088822008.1\|3763961_3768929_-\|alpha-2-macroglobulin-family-protein	unknown	unknown	gnl\|CDD\|225248
NZ_CP017143.1\|WP_005310133.1\|3778970_3779741_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226961
NZ_CP017143.1\|WP_080697392.1\|3761599_3763903_-\|penicillin-binding-protein-1C	unknown	unknown	gnl\|CDD\|183049
NZ_CP017143.1\|WP_005310125.1\|3782371_3782722_-\|arsenate-reductase-(glutaredoxin)	unknown	unknown	gnl\|CDD\|239332
NZ_CP017143.1\|WP_005310145.1\|3773849_3774635_+\|pyruvate-formate-lyase-1-activating-protein	unknown	unknown	gnl\|CDD\|182994
NZ_CP017143.1\|WP_042468004.1\|3758940_3760389_-\|tRNA-4-thiouridine(8)-synthase-ThiI	unknown	unknown	gnl\|CDD\|234932
NZ_CP017143.1\|WP_017412017.1\|3769021_3770710_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|163244
NZ_CP017143.1\|WP_005310135.1\|3778147_3778921_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270421
NZ_CP017143.1\|WP_005310139.1\|3776354_3777047_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226634
NZ_CP017143.1\|WP_042468015.1\|3785297_3786368_+\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701
NZ_CP017143.1\|WP_005310141.1\|3775468_3775993_-\|acyloxyacyl-hydrolase	unknown	unknown	gnl\|CDD\|378181
NZ_CP017143.1\|WP_157668956.1\|3781317_3781959_+\|DUF479-domain-containing-protein	unknown	unknown	gnl\|CDD\|225666
NZ_CP017143.1\|WP_005310143.1\|3774722_3775364_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225775
NZ_CP017143.1\|WP_088814205.1\|3770805_3773784_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923

Protein	Function_ID	Function_description	E-value
NZ_CP017143.1\|WP_042468012.1\|3782780_3783260_+\|TlpA-family-protein-disulfide-reductase	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	1.00934e-24
NZ_CP017143.1\|WP_005310131.1\|3780272_3781175_+\|lysine-exporter-LysO-family-protein	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	9.8385e-78
NZ_CP017143.1\|WP_005310119.1\|3785038_3785272_+\|sulfurtransferase-TusA-family-protein	gnl\|CDD\|376492	pfam01206, TusA, Sulfurtransferase TusA. This family includes the TusA sulfurtransferases.	5.30781e-18
NZ_CP017143.1\|WP_005310127.1\|3781979_3782375_-\|DUF2069-domain-containing-protein	gnl\|CDD\|378269	pfam09842, DUF2069, Predicted membrane protein (DUF2069). This domain, found in various prokaryotes, has no known function.	4.09151e-37
NZ_CP017143.1\|WP_005310133.1\|3778970_3779741_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226961	COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism].	2.05006e-161
NZ_CP017143.1\|WP_088814366.1\|3783455_3784859_-\|M48-family-metallopeptidase	gnl\|CDD\|227122	COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only].	2.36194e-145
NZ_CP017143.1\|WP_088822008.1\|3763961_3768929_-\|alpha-2-macroglobulin-family-protein	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	0
NZ_CP017143.1\|WP_080697392.1\|3761599_3763903_-\|penicillin-binding-protein-1C	gnl\|CDD\|183049	PRK11240, PRK11240, penicillin-binding protein 1C; Provisional.	0
NZ_CP017143.1\|WP_005310125.1\|3782371_3782722_-\|arsenate-reductase-(glutaredoxin)	gnl\|CDD\|239332	cd03034, ArsC_ArsC, Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.	3.36982e-52
NZ_CP017143.1\|WP_005310145.1\|3773849_3774635_+\|pyruvate-formate-lyase-1-activating-protein	gnl\|CDD\|182994	PRK11145, pflA, pyruvate formate lyase 1-activating protein.	0
NZ_CP017143.1\|WP_042468004.1\|3758940_3760389_-\|tRNA-4-thiouridine(8)-synthase-ThiI	gnl\|CDD\|234932	PRK01269, PRK01269, tRNA s(4)U8 sulfurtransferase; Provisional.	0
NZ_CP017143.1\|WP_017412017.1\|3769021_3770710_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|163244	TIGR03385, Coenzyme_A_disulfide_reductase, CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. [Cellular processes, Detoxification].	3.52599e-160
NZ_CP017143.1\|WP_005310135.1\|3778147_3778921_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270421	cd13703, PBP2_HisJ_LAO, Substrate binding domain of ABC-type histidine- and lysine/arginine/ornithine transporters; the type 2 periplasmic-binding protein fold. This subgroup includes the periplasmic-binding proteins, HisJ and LAO, that serve as initial receptors in the ABC transport of histidine and lysine-arginine-ornithine amino acids. They are belong to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.44832e-127
NZ_CP017143.1\|WP_005310139.1\|3776354_3777047_-\|ABC-transporter-permease	gnl\|CDD\|226634	COG4160, ArtM, ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism].	2.52099e-99
NZ_CP017143.1\|WP_042468015.1\|3785297_3786368_+\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	5.34249e-60
NZ_CP017143.1\|WP_005310141.1\|3775468_3775993_-\|acyloxyacyl-hydrolase	gnl\|CDD\|378181	pfam09411, PagL, Lipid A 3-O-deacylase (PagL). PagL is an outer membrane protein with lipid A 3-O-deacylase activity. It forms an 8 stranded beta barrel structure.	1.62055e-11
NZ_CP017143.1\|WP_157668956.1\|3781317_3781959_+\|DUF479-domain-containing-protein	gnl\|CDD\|225666	COG3124, COG3124, Uncharacterized protein conserved in bacteria [Function unknown].	8.35552e-47
NZ_CP017143.1\|WP_005310143.1\|3774722_3775364_+\|hypothetical-protein	gnl\|CDD\|225775	COG3235, COG3235, Predicted membrane protein [Function unknown].	2.84487e-33
NZ_CP017143.1\|WP_088814205.1\|3770805_3773784_+\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	5.65035e-101

>NZ_CP017143.1|WP_005310139.1|3776354_3777047_-|ABC-transporter-permease
MDFSIILKEWPTYWQGLYTTVLLVAASLILGLALAVPMGILRNSRNWLIKGPIWAYIYFFRGTPLLVQLFIIYYGAAQWEWLKNSAAWTLFAEAWFCALLAFTLNTGAYTAEIVRGAVLNMPKGQIEAANAFGMSRWQTLTRIILPNSFRRALPAYSNEVIFMLQGSAVAGIITIVDLTGAARIINSRYYSPFEAFLTAGLLYMLLTFVIVWLFKKWEARWHAHLRPRSL
>NZ_CP017143.1|WP_005310141.1|3775468_3775993_-|acyloxyacyl-hydrolase
MRANTLLLSGLLASLIASTGAIANDNIVALQLGTPSENEKLSIFTADAKYHHMFWRWGDSGCQFGLGVRGGMLKAGDERTARLGTGARAECLWGNWVVWLPAEVIWLADHEFGHRGNGFKDYGGPFQFVTGIGLGYAITKNWLIGYQYEHMSNANMYEQNPGLDTHTLHIEYRF
>NZ_CP017143.1|WP_005310143.1|3774722_3775364_+|hypothetical-protein
MSEGQAAALLLWVLLLIFSLRGTLLRTLLNQPLYQHLCLGGAIVLVPLWTLRAGLHEGLEVHFLGLTSLTLLLGWRLALLAPCLTLLVLGYFGVASLADFGWQALIGIALPVATSWLLFLASWAWMPRHLFVYLFVVAFFGGALSISVKMIASALLMGMSGAYPWHTISADYLSIWPLLLFPEALLNGMTMTLLAVYRPHWVNTFFDREYLGR
>NZ_CP017143.1|WP_005310145.1|3773849_3774635_+|pyruvate-formate-lyase-1-activating-protein
MSVSNQIPAVETSESGVIGRIHSVETCGTVDGPGIRFIVFMQGCLMRCKYCHNRDTWDTQGGREVTVPELMSDITSYRHFMNASGGGVTASGGEAMLQQNFIAELFAACKEKGVHTCLDTNGFVRHYDEQLDKVLDNTDLVLLDIKQINDEKHIPLTHVSNKYTLEFARYLAAKGKTMWIRYVVVPTWSDDDESAEGLGQFIAELGDSVEKVELLPYHELGKHKWDVLGENYDLTGIKPPSKETMDRVQGILAKYHNNVKY
>NZ_CP017143.1|WP_088814205.1|3770805_3773784_+|EAL-domain-containing-protein
MPPDSCSTGCYQFMSSTALSHLPPASQTPLFFRLDVRSQRLVALTDVMQTPLHWLDEPRSAWPAQLPDALRLPIEQALAKGQGGKLMLRFAGQQWHIALSHEQDAFWLICLQTQRQEPIADLALQLPRLSQMASQQQFVAMLEALKESLGADRLILWHYQANGSLGSEQLTPVFALGAEGLSAIRGDSRYIRALRTRKSLSFSEAAHQPMLSQHYYLANAGVSSRLDGALLEQEKLIGVLSLEYLSATVLSEEMLQLVRHSAQLLGHWQPEPEPIINPVLALPGELTLLTGIAYCRALVNWAVTMSGARIGWVGEYQPRDQELWIIPRCVLEGETFSILKPIQLDPGPAQELFQHGQALYVEDLPLRYPLATQLLALNAKAYVGVPLHGPSGAPMGQLTLLLDTPLADPMPLLDALSSQHERAAIELQRLAADDALRLAEVAFNTHDGLLVMDHQGIILKVNHSFGRITGFGNDEMIGQHIVRLRPTYYGDHLKEDVRRAIDEQEFWMGEERCLHKDGHLFPVRLMVSGVKDELGEFSHYVCSFYDITKEKDAARHIEQLAYYDDLCGLYNRRSLNNIMQCTLQAPNGQWGALLLVDLDNFKSINDSLGHACGDQLLQAVVERLKGLPQDNLVLARIPGDEFALLFTALGQGYVTAKILAEHFARELMGLFRTPFDIEDHKLHCSASVGISLFSSEDQDHLVLMQQADTATHMAKRAGQGNYVFFSEAMAEKEKSKLTINNQLRDALRHHELQLHYQPQYRVDNGSLSGIEALLRWQRSDGTMVPPAEFIPIAEETSLIQDIGYWVMKTACAQYSFWLNRGFAIPHLSVNVSARQFHTAGFVQQVEYILRDTGVPPSRLLLEVTESVVLENRLESIARMRQLKELGILLSIDDFGTGYSSLAYLRDLPADEVKLDRSFIQTLVHSEQDKAIVKAILDLAKVFRFTVTAEGVEDEEQLAILKTLGCQHYQGFLTSRPLTVKALESLLGAAQSG
>NZ_CP017143.1|WP_017412017.1|3769021_3770710_-|FAD-dependent-oxidoreductase
MKRILIVGGVAGGASAAARARRLSEEAEIVVFERGEFVSFANCGLPYHIGGDIQDRDALLLQTPQSFKRRFNVDVRVFHDVIEIDKAGKTLLVRNLQTGEERREPYDQLLLSPGAAPIRPPFPGIDSPHVYTLRNIPDMDRILAALQHDHPRHVTVVGGGFIGLEMMEALHQRKLEVTLLELSDQVMAPVDKEMANMLHARIREEGIDLRLRTGLAAIESLDVLAEKTAAVASATRSGLRLTLSDGSHLETGLLILAIGVKPETLLAAKAGLELGPRGGIKVDAGMRTSDPFIHAVGDAVEETDFVTGESVLIPLAGPANRQGRIAADNMLGRAETYKKTQGTAICKLFDLAVASTGLNEKRLVQLGLPFEKAYVHPGSHASYYPGAHPVSLKLLFAPDGKIYGAQAIGKDGVDKRIDVLAVAQRAGLTVFDLQDLELTYAPPFGSAKDVINMAGFVASNHLKGDTILCHAAEVQARHPHQQVLDVRNGPELDKLGRIPGALHIPLDELRGRLNELPRDKELLISCQVGLRGHVACRLLSQHGFKVKNLSGGFKTWQMAVMD
>NZ_CP017143.1|WP_088822008.1|3763961_3768929_-|alpha-2-macroglobulin-family-protein
MCQASRMSYPVAYRAAMAAIQSGMEPMRPFDPRPAAHQCAHAFVSPLRRRWSALLLTGLTGLLLAGCGQDKPAATADQAPAARQVAGVPDTVVQANARQYRDAPALALVFSGPLAPKSNWQTWLSVSEGGKQLQGEWVLAEDGRTLYFPQVAPDKSYKVTLKAGLGPEAQSWTLKTRPLEAGASFAASGMVLPLRQELRLPISAVNVDEVNIDFFRVDAEYLPRFLAEYRPGAGMGNWELEQITSRAKRVFSGRYALELDPNRRETRLINVKEPQLAEAGVYFAVMSPLGNYDWRKETTYFAVSDMGLSARRYRDQLEVFVSALSSADPLKEVQLSLLDEKGNRLLVQQTDLRGHRRFDQVQGARLLLAEQGKHLAVLRLDGAALDLSAFELGTQPWQAQQLYLFSGRDLYRPGERLDSEILLKGQDGQLLPGMAVELEVKQPDGQLLEQKRLLPDSLGAAHYGLRLPDDAPLGRWTITLKTAAGSRFEWPFLVEEFLPERLKLQLGKGPDGELLNPQEALTLPLQGDYLYGAPASATKAKAEVKISRATMPFNQWQEFTLGDVLLTEQARDLEPVTLTLDKQGHGAFSLVDQLASVGTLGPLEVAYRVSLSEPGGRAVNRSRTQYGWPTGSQWPALKADFVADRVEGGKTLPFQILNLDEQGQPVAGEVKVRLVNEYRDYYWHYADGEGWKYEFNSQPYLEQEQTLQLDGKGPTTLSLPLAAGWYRLEVENSQGHQSSLRVEIGSYAWGGGGEQARPDKIAITLDKRAYQAGDKAKVTLVAPRAGKGLLLVEDGDGLRWWQRIELRPEGAGLAEARGEFEIPVSPEWQRHDLHISAQIAAPDSESKPVSQKSVQSLRSVGLVPLALDREARRLPLTLSAPDKAVPLTRLEVAVTSTPNSQGRVVLAAVDRGVLNISDYQPLDPFEIFFGRKRFAQDLFDNYGQVIPPQDGKLARLNYGGDAPALKKGGALESRVEVAALWSGEVSFDESGKAVIPLDLPNFNGELALMALAWNEQQVGQAERAVKVVAPLVAEIGWPRFGARGDETRGLVQLRNMSGEDQSLSLTWTLTGGLQARGALPETLALKNGEERWLTLPLTVTGASGVARLQLAASGKDFAVNREWSLPLRSPWPAQTRQRYQMLAPNQQMSFAQSELAGLDPANLQGLLSLSGTPPWDPTGQWQALAQYPYACLEQTLSRAWPYLLTTADERAAWSNNLPNVDKPVSEADLQRALLQRLQRLQLPGGGFGLWDGRSDEEQWLTAYAADYLLTRKEAGDAVPEAMLSQAISRLQSYLGDSQYGERWSSAPEHSRLAYQAYSAFVLARVGKAPLSTLRLIWEQQADHARSGLPLLHLSLALSAMGDEQTAAKALTRALATPRGDDYLADYGSPLRDGALELALLRQHKLAEDRWPELSAKVADTLAHRQWLSTQERLALLRLAQVDPAADWQARVASISGGQAVAGKNSAQIGAPEALAATGVTNEGKGSLYVQRTLVGYPEQAPVRISQGMSVTRSWFNADGKQLDPAKVKVGDFVVVRLNVSSEQTVPDALLVEMLPAGFELENPALGTSIKLEELSIEGKPAWQSEWNDYLKHQEFRDDRYTAALDLSEGGNQQLVYLMRAVTPGRYQVPPTQVEDMYRPELRAVGQDIHEVTISE
>NZ_CP017143.1|WP_080697392.1|3761599_3763903_-|penicillin-binding-protein-1C
MHQGRLALPGLPRWLRLTGLGMGALILVLLVLDRAFPPPPLDPAYARVVLDMKGRPLRAFADTSGVWRYPVTLEQVSPRYIEALLGYEDRHFWRHPGVNPVAMVRGVWQWLRYGRAVSGGSTLTMQVARLIEPYHRSVPGKLRQMARALQLEWHYDKRTLLTVYLNRAPFGGNLEGVQAASFAYLGKSAAKLTHAEAALLAVLPQAPSRYRPDRHPDRARAARDKVMQRLVKQGAWPDAVWREGRIEPVLARGHFTPMEAPLFARLAADSQPGALVHTTIDGDLQRWLEARVATYIRRFPEQTSAALLLVDNQTMAVRAYVGSAEYGNLRRHGYLDMVQAIRSPGSTLKPFIYGLALDAGLVHSASLLSDAPRLGSDYRPANFTGAFQGPVTLTRALQQSLNVPAVQVLEALGPDTLVNRLDNAGVRLALSDKPNPAIALGAAGVRLEQLVALYSSLTRQGQVAMPVWLAGQQAVSRPLLSPGAAWITWQILSSQGRADQPFASEATGRVNRLAWKTGTSYGYRDSWALGVSGRWTLGVWLGRPDGTPLPGFYGQSAAVPLLLSVYSRLGDNSPLPAQPNTVSEAEICWPLGRRVSATLPEACLQHQSAWLLDEQDPPTLPDPMDWPSPLRQVALTSQGKPTLTRCDDASQSVWRALWPLSLEPWRAPGERRKALLASGCEGEAQEADLQAPIRIVALGEGNLIRSQRYRLQPRVLGGVGKPFWFLNGQRLRWDGDQVLSKAGRYQLVVVDEAGNSDRVEFRLENPS
>NZ_CP017143.1|WP_011898880.1|3760566_3761526_+|hypothetical-protein
MKTYIYYPGMEVRDELWLKFALLYLERLAFVFTISEKSGLTTLLSTLEQRTDLLAERPEPAFFADITPQLESQLGGLVAPDFARHKVFGNRDLITRWRQSANHDCFCPTQAGLERLHGFCLAHGFASQDEGGIKMARRFANLLSMRLAREWALANEGALITDHDYLDRLLHLLESRYHNRGGQDCFHLEIPLRVPTHLSEISFDELIALRARSGFRQQLAEFHQALDAMLTMLGSGYAEPAALTRFELAQQGLNQLLGPATHSLPLTTLISCSLPAMAMIHQLKASHPASNLIFHPIKKSHFHQRKSQHFFTRLGQVKS
>NZ_CP017143.1|WP_042468004.1|3758940_3760389_-|tRNA-4-thiouridine(8)-synthase-ThiI
MKFIIKLFPEITIKSKSVRQRFTKMLQGNIRNVLRRFDEDARVRMDWDKLVVSSRNDQFHAQYLETLACIPGIQYFLEVKLSNFTDLHDIFEQTRAVWGDRLKGKTFCVRARRVGKHDFSSLELERYVGGGLNQHCETAGVRLKKPDIQVNLEVENDELYIISAVHHGMGGFPIATQEDVLSLLSGGFDSGVASYQFIKRGCRVHYCFFNLGGAAHEIGVKQVAYYLWSKFGASHKVRFTAIDFEPVVAEILEKVDNGQMGVVLKRMMMRAAGQVADYFQIPALVTGECVGQVSSQTLTNLNVIDRVTDKVILRPLITWDKPDIISEARRIGTLEFAETMPEYCGVISKKPTIKAVLSNIEAEEANFDFAILDKVVSEARYLDIRRIGEETAAEVQEIETTEVLAADEVILDIRSADERDEKPLVVEGRDVLHIPFFKLATAFGDLPKEQTYLLYCDRGVMSKLQALYLKEKGFDNVKVYRP
>NZ_CP017143.1|WP_005310135.1|3778147_3778921_-|ABC-transporter-substrate-binding-protein
MNKLMLATAIVTALSSGSLMAKEWKEVRIGVEGAYPPFSWTEPSGEVKGFDIDIANALCAEMKVKCTLVKQDWDGIIPALLSRKYDAIIATMDITEERKKKVDFTQKYQHIPARFAAKKGTDVQLDKAFMDGKAVAVQRATSMDTYITDNFPNATIKRYGTADEAYLDLKSGRVDYVLADSAAITDGLLKKEGGDGFEFVGPKLTDPKWFGEGAGIAVRKADKDLKEKFNTAILALRANGKYKEINDKYFEFDVYGE
>NZ_CP017143.1|WP_005310133.1|3778970_3779741_-|ABC-transporter-ATP-binding-protein
MSDVAALEVRELHKYFGTHEVLKGIDMTAHKGDVISLIGSSGSGKSTFLRCINLLETPSSGTVSLHGELIRMKTNRAGERLAEDVRQVERIRSRLAMVFQSFNLWSHMTIMQNIIEVPIQVLKIPRAEAIAKAEHLLNRVGLWERRDYYPGHLSGGQQQRAAIARALAVDPEVMLFDEPTSALDPELVGEVLGLMRELAEEGRTMLVVTHEMSFARDVSNKVMFLHQGRVEEEGNPKEIFAHPKSERFKQFISSIY
>NZ_CP017143.1|WP_005310131.1|3780272_3781175_+|lysine-exporter-LysO-family-protein
MLLNVLLILLPLAIGYLIPLSSARLIKLVNQSLGKMVYLILFLMGLGLAYVENLGSNLAVIFKVAGVMLAAITFCNLLALWWLDKRSPPTHEASDAKMPSKRHLLWESLQLCFVVLGGVLLGLLVDLRILPIDKLSEWALMLLLLLIGVQMRNSGMRLRQILLNPWGMKIAFTVIVSSWLGSLLAAQLLGMPFSHGLAISSSFGWYSLSGILVADKLGPVLGSAAFINDLGRELIAILIIPMLMHRHPSAAIGYGGATALDFTLPVIQKSGGIQVVPVAIVSGFILSLLGPILILGFLAI
>NZ_CP017143.1|WP_157668956.1|3781317_3781959_+|DUF479-domain-containing-protein
MNYLAHLHLAAHTRSSLTGNLLGDFIKGPLPSALAPEFDEGIWLHRKIDAFTDAHPEHRAAVACFEAPWRRFGGILVDMLYDHWLSVHWPQFCAEPLPRFLQHSYDQLLADHLLLADGLPAALKRMAEQNWIASYRHKEGLGRALNGIGHRLRRPVLLGDALTTLDEMDWHTCELGFLRFYPQLMAFTRPLSRDRRPRRLAAIKNRTLGPVCR
>NZ_CP017143.1|WP_005310127.1|3781979_3782375_-|DUF2069-domain-containing-protein
MTTRFARLLTLVGFFGLLGWVILWHLFLSPHPDLNPWLLPVIWTVPLLFPLKGIVQGNPYTHAWGNFVLMPYFLHALTLITTDEGERWLAVVELVFTTLAFVGTIYYARLRGRELGLSIRKKKGELSQEEK
>NZ_CP017143.1|WP_005310125.1|3782371_3782722_-|arsenate-reductase-(glutaredoxin)
MSETQIYHNPRCSKSRETLALLEQHGIAPDVVLYLEQAPSEDVIRTLLTQLGFADPRQLIRTKEDLYKELGLADQSGDALIRAMHQHPKLIERPIVIKDGKARIGRPPEQVLEILK
>NZ_CP017143.1|WP_042468012.1|3782780_3783260_+|TlpA-family-protein-disulfide-reductase
MVRVSGRAQEMKRICWMIVAALLTACSPAPEFSNGQGQPVTLAQFAGKPLLVNYFAPWCVPCLRELPLLETLAQEGKIAVVVNSYDPATPAELGALASRHHIRVPLLIADKEAHLPFSLPTGLPTSYLLDGEGRLQATLVGELDGQKIAALKLRAAQFR
>NZ_CP017143.1|WP_088814366.1|3783455_3784859_-|M48-family-metallopeptidase
MGATFHAQANNQLPDIGTAGVAALPIEQEVRYGNAFMRFARAGLPIIDDPVLSQYIDDLGQRLLTNADGVRFPFTFFLVNDPSINAAAFLGGRVKVHTGLFLYADSESELASVLAHEITHVTQRHIARYMEAQASSSAMTLAGLVGSIALAVINPTAGIAALQTTLGLSMQSAINYTRDNEYEADRIGMKTLYDAGFDPMGMANFFQKLAAEYRYASKPPQMLLTHPLPETRISEARGRANSYGRRNLPPSLDFWLAKVRIQVRYGTETPQALLSYFDSRLQKGDYPLKDAATYGKALALLQLKRTDEADTLMQELATRHPEDLFVVDALTDIDLAKGRSAQAIARLEKFRARMPDNEVVVVNLGNAYLEGGDYKKSIAILDPYARDHEENSLAWNLLSDAYRKAGRMTELHMARAEMLSLRGDYQAAIDELIVARGTTSDKLTLARLEARITELERAKKDLDSLKG
>NZ_CP017143.1|WP_005310119.1|3785038_3785272_+|sulfurtransferase-TusA-family-protein
MEHLDLTPWRCPEPLIRLKLWLRQATPGQSLSIQLADPGSRQDIPAYLQRQGHTVTLQQGPDNTIFLQLVVGAKQPS
>NZ_CP017143.1|WP_042468015.1|3785297_3786368_+|AI-2E-family-transporter
MLEVLKRWYQTRFSDPDAVTLFLLLVACFAVLWLFGGLLAPLLVALVMAYLLEWPVSRLQRAGLSRALATSLVLLLFIAVTVMALLGLIPTLVSQGINLAKESPSMLAHAQDYVRTLPEKYPEVIDVTLVETIIDNIRQRILSGGEHLVSASLSSLVNVVAILIYLILVPLMVFFMLKDKQELMGGLRRFLPRNRTLVNRVWVEMNDQIINYIRGKVIEILIVGVATYIPFALMGLRYSALLAVAVGFSVLIPYIGAAAVTVPVAMVALFQWGLTPEFTWLMVAYLVIQALDGNLLVPLLFSEAVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVINAWPKRDDPALPGV

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Crispr_ID: NZ_CP017143_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017143_10

4471652-4471796

Orphan

Consensus_repeat	Method
GCCCTGGGCACACCGGCCTTGATATTCTTCTGTTTCAGTTCCCAGGCATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017143_10

>merge|NZ_CP017143|10|4471652-4471796|CRISPRCasFinder
GCCCTGGGCACACCGGCCTTGATATTCTTCTGTTTCAGTTCCCAGGCATCCTTAATGTGAAGAGGCTGGGGCTTGCATCCAAGTCGGTCCGTTGCGCCCTGGGCACACCGGCCTTGATATTCTTCTGTTTCAGTTCCCAGGCATC

>NZ_CP017143|10|10|4471652-4471796|CRISPRCasFinder
GCCCTGGGCACACCGGCCTTGATATTCTTCTGTTTCAGTTCCCAGGCATC	CTTAATGTGAAGAGGCTGGGGCTTGCATCCAAGTCGGTCCGTTGC
GCCCTGGGCACACCGGCCTTGATATTCTTCTGTTTCAGTTCCCAGGCATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017143.1\|WP_005317010.1\|4474005_4475094_-\|peptide-chain-release-factor-1	unknown	unknown	gnl\|CDD\|234801
NZ_CP017143.1\|WP_005317005.1\|4472658_4473042_-\|SirB2-family-protein	unknown	unknown	gnl\|CDD\|377264
NZ_CP017143.1\|WP_005316983.1\|4465834_4466092_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017143.1\|WP_005316999.1\|4467595_4467976_+\|autonomous-glycyl-radical-cofactor-GrcA	unknown	unknown	gnl\|CDD\|213978
NZ_CP017143.1\|WP_005316978.1\|4464339_4464888_-\|hemerythrin	unknown	unknown	gnl\|CDD\|226454
NZ_CP017143.1\|WP_076611341.1\|4468581_4469499_+\|IS5-like-element-ISAs4-family-transposase	unknown	unknown	gnl\|CDD\|290455
NZ_CP017143.1\|WP_042468523.1\|4481615_4482257_+\|aminoacyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|235457
NZ_CP017143.1\|WP_042468526.1\|4475147_4476404_-\|glutamyl-tRNA-reductase	unknown	unknown	gnl\|CDD\|234592
NZ_CP017143.1\|WP_005317019.1\|4478369_4479317_+\|ribose-phosphate-pyrophosphokinase	unknown	unknown	gnl\|CDD\|234929
NZ_CP017143.1\|WP_042468773.1\|4458736_4460710_+\|DUF3488-domain-containing-transglutaminase-family-protein	unknown	unknown	gnl\|CDD\|378784
NZ_CP017143.1\|WP_005316974.1\|4462997_4463948_+\|transaldolase	unknown	unknown	gnl\|CDD\|235381
NZ_CP017143.1\|WP_042468530.1\|4470740_4471595_-\|3-deoxy-8-phosphooctulonate-synthase	unknown	unknown	gnl\|CDD\|235363
NZ_CP017143.1\|WP_011899080.1\|4466269_4467301_+\|IS630-family-transposase	unknown	unknown	gnl\|CDD\|315923
NZ_CP017143.1\|WP_005317007.1\|4473086_4473956_-\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	unknown	unknown	gnl\|CDD\|236467
NZ_CP017143.1\|WP_005317016.1\|4476524_4477109_+\|outer-membrane-lipoprotein-LolB	unknown	unknown	gnl\|CDD\|319984
NZ_CP017143.1\|WP_005316980.1\|4465134_4465803_-\|uracil-DNA-glycosylase	unknown	unknown	gnl\|CDD\|235376
NZ_CP017143.1\|WP_042468524.1\|4479418_4481407_+\|bifunctional-metallophosphatase/5'-nucleotidase	unknown	unknown	gnl\|CDD\|277354
NZ_CP017143.1\|WP_042468528.1\|4471846_4472647_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|225464
NZ_CP017143.1\|WP_005316972.1\|4460812_4462255_-\|alanine:cation-symporter-family-protein	unknown	unknown	gnl\|CDD\|376500
NZ_CP017143.1\|WP_017412585.1\|4477135_4478005_+\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	unknown	unknown	gnl\|CDD\|234731

Protein	Function_ID	Function_description	E-value
NZ_CP017143.1\|WP_005317010.1\|4474005_4475094_-\|peptide-chain-release-factor-1	gnl\|CDD\|234801	PRK00591, prfA, peptide chain release factor 1; Validated.	0
NZ_CP017143.1\|WP_005317005.1\|4472658_4473042_-\|SirB2-family-protein	gnl\|CDD\|377264	pfam04247, SirB, Invasion gene expression up-regulator, SirB. SirB up-regulates Salmonella typhimurium invasion gene transcription. It is, however, not essential for the expression of these genes. Its function is unknown.	3.44023e-23
NZ_CP017143.1\|WP_042468528.1\|4471846_4472647_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|225464	COG2912, COG2912, Uncharacterized conserved protein [Function unknown].	3.14853e-57
NZ_CP017143.1\|WP_005316999.1\|4467595_4467976_+\|autonomous-glycyl-radical-cofactor-GrcA	gnl\|CDD\|213978	TIGR04365, Autonomous_glycyl_radical_cofactor, autonomous glycyl radical cofactor GrcA. This small protein, previously designated YfiD in E. coli, is closely homologous to pyruvate formate_lyase (PFL) in a region surrounding the stable glycyl radical that is prepared by the action of pyruvate formate-lyase activase, a radical SAM enzyme. When damage at the site of this radical breaks the main chain of PFL, this protein acts as a spare part that reintroduces the needed stable glycyl radical. Cutoffs for this model are set to exclude a set of closely related phage proteins that appear to have a corresponding function.	2.14422e-82
NZ_CP017143.1\|WP_005316978.1\|4464339_4464888_-\|hemerythrin	gnl\|CDD\|226454	COG3945, COG3945, Uncharacterized conserved protein [Function unknown].	3.25318e-17
NZ_CP017143.1\|WP_076611341.1\|4468581_4469499_+\|IS5-like-element-ISAs4-family-transposase	gnl\|CDD\|290455	pfam13737, DDE_Tnp_1_5, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	2.87975e-48
NZ_CP017143.1\|WP_042468523.1\|4481615_4482257_+\|aminoacyl-tRNA-hydrolase	gnl\|CDD\|235457	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional.	3.89654e-107
NZ_CP017143.1\|WP_042468526.1\|4475147_4476404_-\|glutamyl-tRNA-reductase	gnl\|CDD\|234592	PRK00045, hemA, glutamyl-tRNA reductase; Reviewed.	0
NZ_CP017143.1\|WP_005317019.1\|4478369_4479317_+\|ribose-phosphate-pyrophosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	0
NZ_CP017143.1\|WP_042468773.1\|4458736_4460710_+\|DUF3488-domain-containing-transglutaminase-family-protein	gnl\|CDD\|378784	pfam11992, DUF3488, Domain of unknown function (DUF3488). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is typically between 323 to 339 amino acids in length. This domain is found associated with pfam01841. This domain has a conserved PLW sequence motif. This domain contains 6 transmembrane helices.	5.32e-72
NZ_CP017143.1\|WP_005316974.1\|4462997_4463948_+\|transaldolase	gnl\|CDD\|235381	PRK05269, PRK05269, transaldolase B; Provisional.	0
NZ_CP017143.1\|WP_042468530.1\|4470740_4471595_-\|3-deoxy-8-phosphooctulonate-synthase	gnl\|CDD\|235363	PRK05198, PRK05198, 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional.	0
NZ_CP017143.1\|WP_011899080.1\|4466269_4467301_+\|IS630-family-transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	9.20597e-16
NZ_CP017143.1\|WP_005317007.1\|4473086_4473956_-\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	gnl\|CDD\|236467	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional.	9.92111e-127
NZ_CP017143.1\|WP_005317016.1\|4476524_4477109_+\|outer-membrane-lipoprotein-LolB	gnl\|CDD\|319984	cd16326, LolB, LolB, an outer membrane lipoprotein receptor. This family contains the outer membrane lipoprotein receptor, LolB, which catalyzes the last step of lipoprotein transfer from the inner to the outer membrane. There are five Lol proteins (LolA, LolB, LolC, LolD, and LolE) involved in the sorting and membrane localization of lipoprotein and are highly conserved in Gram-negative bacteria. LolA transports lipoproteins through the periplasm to LolB, which then localizes them to outer membranes; the protruding loop of LolB has been shown to be essential for the localization of lipoproteins in the anchoring of bacterial triacylated proteins to the outer membrane.	6.33028e-56
NZ_CP017143.1\|WP_005316980.1\|4465134_4465803_-\|uracil-DNA-glycosylase	gnl\|CDD\|235376	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional.	5.99938e-147
NZ_CP017143.1\|WP_042468524.1\|4479418_4481407_+\|bifunctional-metallophosphatase/5'-nucleotidase	gnl\|CDD\|277354	cd07409, MPP_CD73_N, CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	1.73753e-78
NZ_CP017143.1\|WP_005316972.1\|4460812_4462255_-\|alanine:cation-symporter-family-protein	gnl\|CDD\|376500	pfam01235, Na_Ala_symp, Sodium:alanine symporter family.	0
NZ_CP017143.1\|WP_017412585.1\|4477135_4478005_+\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	gnl\|CDD\|234731	PRK00343, ipk, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional.	0

>NZ_CP017143.1|WP_042468530.1|4470740_4471595_-|3-deoxy-8-phosphooctulonate-synthase
MEQKNIKINDIDVANDKPLVLFGGMNVLESRDMAMAVCEKYVEVTSKLGIPFVFKASWDKANRSSIHSYRGPGLEEGMKIFQELKATFGMPVISDLHEVHQAKPVAEVVDVIQLPAFLARQTDLVEAMARTGNVINIKKPQFLSPSQMKNITDKFEECGNDQLILCERGANFGYDNLVVDMLGLGVMKKSTGGYPVIFDVTHSLQCRDPLGAASGGRRDQVTELARAGMAVGLAGLFIESHPDPKVARCDGPSALPLDKLEGFLKQMKAIDDLIKGFEPLDTSA
>NZ_CP017143.1|WP_076611341.1|4468581_4469499_+|IS5-like-element-ISAs4-family-transposase
MGKALHPITNWPQYNRSLINRGSLTFWVDAEAMDNWFHQDHHGKRGRSQLYTDQSICTFLMLKGIFSLTLRATQGLLDSLFELMNVPLCAPDYSCVSKRARTVKVAYRQPPKGRITDLVIDSTGLKVFGEGEWKVRKHGAEKRRVWRKLHLAVDPVTHDIVAAEVSLENVHDAEVLPTLLNPLRRKLGRVYADGAYDSKASHRLIARKGATACIPPRKNAGLWKKGHPRNEAVQVMRKEGLAHWKKISGYHRRSLAETAMFRFKQLMAGQITLRKYNGQVGEVMAYVSAINKLNTLGLPVRKPRV
>NZ_CP017143.1|WP_005316999.1|4467595_4467976_+|autonomous-glycyl-radical-cofactor-GrcA
MIKGIQITQSANTALLNSFWLLDEEKQQARCICAKGDTFAADQEVKLSDLGQFEYRELPVQAEPAVEGGQHLNVNVLRRETLEDAIANPEKYPQLTIRVSGYAVRFNALTPEQQRDVVTRTFTQSL
>NZ_CP017143.1|WP_011899080.1|4466269_4467301_+|IS630-family-transposase
MPILPPLPRPQRRRIHKIIHATRDKGHARRLMAILLLHEGRTVTDVHHLTGAARSTIGRWLRWYRDEGIDALEALPAGRAPVLPIAKMVTLLVLLMQFSPQDFGYQRSRWCTELLAIKINRLTGLNVAASTLRRWLPRMGIVWRRPVPTLRIKDPAYQEKMANIDAALARCNADNPVFYEDEVDIDLNPKLGADWMFRAQQKRVVTPGQNAKHYLAGVLHAGNGRVLYVSGIKKNSSLFIAMLEKLRHHYRRAKTITLILDNYIIHKSKQTERWLKKNPKFCLVFQPVYSPWVNHIERLWHKLHETITRNHQCRGMANLLARVKYFMDTVSPFPGNGYGTAKV
>NZ_CP017143.1|WP_005316983.1|4465834_4466092_-|hypothetical-protein
MLWFIGSMGQGAMALEMGPVAIDLLFYIEGLYSPLGGSVTECGRWPAIPGAGDAPCCVLSLKDTALLGGLRRWRYGCVLLSGPLS
>NZ_CP017143.1|WP_005316980.1|4465134_4465803_-|uracil-DNA-glycosylase
MRTWTDVIGSEKEQDYFKATLATVRSEREAGKVIYPPATEVFNAFKLTELDQVKVVILGQDPYHGPNQAHGLCFSVLPGVRTPPSLVNIYKEMQRDLPDFVTPNHGFLESWAQQGVLLLNTVLTVQAGMAHSHAHLGWETFTDRVIEQINASCQGVVFLLWGAHAQKKGRFIDRSRHHVLSAPHPSPLSAHRGFIGCGHFSETNRLLSQQGMSPINWHSVCG
>NZ_CP017143.1|WP_005316978.1|4464339_4464888_-|hemerythrin
MLSSLHKDHLNIARLLTLLKHKLVAIRNEQPVSYFLIRDAVDYLREVSDKYHHPKEDMIYDYYLKYRVVEGEVANRLQEEHARLLGAGAELKEMVEMILMDSVIPLDQFTARLEQFVALQEAHMNYEEAVIFPHLRDSLTEDDWRHLEQLWQNRAIGDPLFGAEISQHFQELAQRLSLPPSS
>NZ_CP017143.1|WP_005316974.1|4462997_4463948_+|transaldolase
MADKLTQLKALTTVVADTGDIEAIKRYQPIDATTNPSLVLKASEIPEYAALIEDAISWAKSQSQDKAQQIIDAGDKLAVNIGLEVLKIVPGRISTEVDARLSFDTEASIAKARKLIRLYNEAGIANDRILIKLASTWEGIRAAEVLEKEGIQCNLTLLFSFAQARACAEAGAFLISPFVGRILDWYKAKHNRDYTPSEDPGVVSVTAIYDYYKQHDYPTVVMGASFRNTGEILELAGCDRLTIGPALLEELSKTEGAVVRKLNYTGERKAKPTPMSEAEFRWELNQDAMAHEKLGEGIRMFAVDQGKLETMLASRL
>NZ_CP017143.1|WP_005316972.1|4460812_4462255_-|alanine:cation-symporter-family-protein
MDTLIAMLNDLMWGAVLIYLLIGVGIFFTFRLGFIQVRHFGHMFSVLRNSRKSDKAGISSFQALCTSLAARVGTGNLAGVAVAIYLGGPGAIFWMWLIAFIGMATAFVESTLAQLYKVKDEDGNYRGGPAYYMERGLGMRWMGVVFSLCLLLAFGLVFNAVQANSISLAMKVAFGIPDWATGLALVVLSGLIIFGGIRGIARFAELVVPFMALAYILMALFVVAMNITELPGVFALIIKSAFGIEQAGSGAMGYAISQAMINGIKRGLFSNEAGMGSAPNAAATATPYPPHPASQGYVQMLGVFLDTIVICTCTAAIILMSGQFEPGSGITGVELTQRALSSQIGGGGNIFIAAAIFFFAFTSIVANYSYAETNLVFLEHNHKGGLMLFRMFVLGMVMFGSVGELPTVWAMADVSMGLMAIVNLVAILLLSSVAIKLAKDYNDQLKLGKVPTFDANKYPEIRSQLEEGIWDNPTQHGKQL
>NZ_CP017143.1|WP_042468773.1|4458736_4460710_+|DUF3488-domain-containing-transglutaminase-family-protein
MLLDNRRLLPLIALQQGVLVLALWPQLQLWVVAVGAITLGVRAMMLWQEWRSPPARALALLAITGVLLLAWQWRVLGTLPALINLLWLGYSLKMIEVRRERDIEQVLLLAFFLIALALVQRQSMGWALTMAATLWLTVSTLVTAVAPEQRQPWRSAGASLLLALPLLLTLFLVLPRLPPLWQMPTTSRALSGLSEEVGPGDISELVNSSELAFRVTFADGPPPASERYFPVMRQEQFDGRRWLLSAETRQWQQSQPMQTIQVQTGAGPLPPASYEVIAEPQRHRWTLALSQPSVLLGPVLVSPLATLYRRERGDQRISYRVTTAPTALPADTATLRRNLQLPVAGNPRARAHAQALKARHPVRAELVAALLDGFRREPFYYTLQPPLLGPDGVDDFLFNSRRGFCGHYAMASAFVLRAAGIPARLVTGYLGGEWNPQGQYLEVHQFDAHAWVEYLDDSGNWQRLDPTAAVAPQRVEGGMTAALSEEFTAADPLSLQRYRQWALLNQLRWWGANLDYQWTRRVLNYDAARLWQQVGLRWPALASHTPWLILTCLLGVATLIGTLLLWPGRALPHLKVWQPLLRRAARQGRQPHAGESLASWCERLIPLDPELARPLLRCAWLYRRWRYAPLSEQRRQQALRQLQRRLRQTCQLWDKRR
>NZ_CP017143.1|WP_042468528.1|4471846_4472647_-|tetratricopeptide-repeat-protein
MIRVDEWTDFEAHDIAELALSVSDEIHGISGRGEAELARLDAWLDEAIAEGSCDEVRRQLLQGFYQTLSFHGDWQDYFSAANSDLAQVLATKRGIPVSLGILIIQLGRKLGLDVEGICFPGHFLVSFAGSEGEVYVDPFTGDELSLHHMELLLRGALGNLATLTPEHLQPSGQWEIIERLLNVSKGALLREDRMTEALRCSELLLRMKPGDPLETRDRGFIYEQLDCPRFAADDFEYFIEQCPDDPVADVLKVQLAALDLSPKPLH
>NZ_CP017143.1|WP_005317005.1|4472658_4473042_-|SirB2-family-protein
MYFALKHLHLVLIASAVLMFMLRFYWVQTGSGRAYSDQIMKVSGWLNGLVVLSGVLLCMVLDLNPLNNGTPWLSEKLTAILVVAFLAMMALRLACNNGIRWFAFLGAIGWVFFIAKLAVYKQASLFG
>NZ_CP017143.1|WP_005317007.1|4473086_4473956_-|peptide-chain-release-factor-N(5)-glutamine-methyltransferase
MQIQQARAHIMATLAGGESPRADADVLLCHLLDCRRSYLMTWPERELDAAQQDRLQGWLTRRLAGEPIAHLVGEREFWSLPLKVSPATLIPRPDTEVLVEQALARLPPKPASPDQAPCALLDLGTGTGAIALALKSERPDADVWAVDRMPEAAALARDNSAALGLPITVRDGSWFEPLCDPLLSQAPRFAMIVSNPPYIDGADPHLNKGDVRFEPRSALVADEQGLADIRLIVAGAPAHLCPGGWLLLEHGWQQGEAVRQLLLQQGFSRVETVRDYGDNERVTLGCLAH
>NZ_CP017143.1|WP_005317010.1|4474005_4475094_-|peptide-chain-release-factor-1
MNPSLIRKLEGLIERHEEVQAMLGEPGVASDQDRYRALTREYAQLEDIVHAFQRFRQAEENLEATKLMLEEDDADLREMAQEELPLAKSTLEEQEQALQVMLLPRDPKDDNNCYLEIRAGAGGDEAAIFAGDLFRMYSRYAERQGWRISIVSCNDGEHGGYKEVIAKVDGEHVYGRLKFESGGHRVQRVPETESQGRVHTSACTVAVLPEVPEAEQIEINANDLKIDTFRASGAGGQHVNKTDSAIRITHLPTGLVVECQDERSQHKNRAKAMSVLSARLQAAEDERHRAAEQSTRRNLVGSGDRSERIRTYNYPQGRLSEHRINLTLYRLGEIMEGDLDCIISPMIQEYQADQLASLAENS
>NZ_CP017143.1|WP_042468526.1|4475147_4476404_-|glutamyl-tRNA-reductase
MSLLALGINHNTASVALRERVAFGPDCIDRALRELVTQPGVSEAVIVSTCNRTELYCSLEKGQGEQVLHWLQRFHGLDAAEVVSAIYQHQDEEAVRHLMRVACGLDSLVLGEPQILGQIKQSYAHAQQSEAVKGSLERLFQKSFSVAKRVRTDTEIGASAVSVAFAAVSLGRRIFSDLSQTKVLLVGAGETIELVARHLREQNVTCMMVANRTLQRAQLLAEEFGAQVMTLEEIPDYLHEADIVISSTASPLPIIGKGMVERALKARRFKPMFLVDIAVPRDIEAEVDELSDAYLYTVDDLQGIIEQNLETRKRAAAEAEIIVLEERDEFMGWYRSQHSVDLIRDYRHQAQQVADEELQRALLSLQQGENAEQALKAMAHRLTNKLIHAPTQALRQAAAQGDHHQLSRLRQVLGLPQE
>NZ_CP017143.1|WP_005317016.1|4476524_4477109_+|outer-membrane-lipoprotein-LolB
MTLFLRIFTFGCLLLLAGCTTTQPQRDQVNWQKERTRLEQLSHWQLSGKMAIITVQQKGSARVNWQQNGDDYRLNLTSLIGTHILELSRSNGEITLIDNEGNPHQSQDAEALIYQLTGWNIPVQGLPEWIKGLPGKAEFELNPDSSLASVRDGQWQIVYGDYRDQDGYRLPHLLTMTGQGSRLKLQINQWTLAR
>NZ_CP017143.1|WP_017412585.1|4477135_4478005_+|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase
MATIRWPAPAKLNLFLNVNGRRPDGYHELQTLFIFLDHGDWLEFEPLPDTDQLTLSPAIPGVPDEQNLIIRAARLLQARLPSPQGAHIRLEKLLPMGGGIGGGSSDAATTLVALNHLWQAGLGEDELAELGVQLGADVPVFVRGRAAFAEGVGERLQPVELPGAWYLVLKPDCHVATAAVFQDPDLPRATPKMAFHNLLEGEWKNDCELLVKKRYPEVANALGWLLEYAPSRMTGTGACVFAQFEDEKAAREVLAKVPKRWDGFVAKGENISPLFVTLQQISDWGIAKR
>NZ_CP017143.1|WP_005317019.1|4478369_4479317_+|ribose-phosphate-pyrophosphokinase
MPDMKLFAGNATPELAQKIADRLFIKLGNAAVGRFSDGEISVQINENVRGGDIFIIQSTCAPTNDNLMELIVMVDALRRASAGRITAVIPYFGYARQDRRVRSARVPITAKVVADFLSSVGVDRVLTVDLHAEQIQGFFDVPVDNVFGSPVLLEDMKSKNLESPVVVSPDIGGVVRARAIAKLLDDTDIAIIDKRRPRPNVSQVMHLIGDVAGRDCIIVDDMIDTGGTLCKAAEALKERGAKRVFAYATHPVFSGSAVENIKNSVIDELIITDSIPLTAEMKAVDKVKQLTLSTVLAEAIRRISNEESISAMFEH
>NZ_CP017143.1|WP_042468524.1|4479418_4481407_+|bifunctional-metallophosphatase/5'-nucleotidase
MNRLRPLLLLACCSFLFACQPGKENQPFALTLAHMNDTHSQFDPVNAELKGPIFGKQGETDTLYTRFGGYPRLLTMVKSYQAEALAKNQPLLLLHGGDAWQGSGYFKLNEGMANSELLSQFGLDAMALGNHEFDLDNQKLARFIEGVNFPLLAANLDTRDDPALRHATNLKPFVVYAFDGNQKSPVTDLNKLPQGKQLVAVMGLVLEDMANISPNVGKLRFGKEVESAQSTVDMLRKKGIHHVIALTHIGNERDLALASRVNGIDAIVGGHSHSLLGDFTNIGWGKTGEYAQLVTNPDGVGLTCVVQAGSYAQAIGLAWVSFDGQGRVIGCKGQNKLLASRDFFADPARQQALDKASGKQASKFVDAQPNLVTVDEDPRLRGIIDSHYKPALEQAFGPVIATVPAPLQNARRPGDNGSDSHGSDVAPLVAEGQYYWANTQAVQALTGGPVHFALLAVGGVRADLPAGELREGDTALTLLPFKNQLSVLTLSGADVRALLAETITATLPASAHAGKFPYGGHLRYTFTETEAGKRGDLTQLQWQTTEGQWQDLVDNQRYRVVMNAYSANGNDGWQALARAQSLRAERLDLAWVDGKLTGFPVEKVEQNGDQLNARYARGQTLDCQARVVNCGTDAASFVQYVREQRPTLTALSEPTVTLLRAE
>NZ_CP017143.1|WP_042468523.1|4481615_4482257_+|aminoacyl-tRNA-hydrolase
MTNQIKLIVGLGNPGPEYAKTRHNAGAWYVEQLARWHNVSLREEPKFFGHTARIQVEGQDVRLLIPNTYMNLSGKAVAALARFYQIEPEAMLVAHDELDLPPGIAKFKQGGGHGGHNGLKDIIARMGNNNNFFRLRLGIGHPGAKELVAGFVLTKAPSSEQNLIDAALDESLRATDILFKQDMTKAMNRLHSFKAGKYITGCACVPHSIYQVR

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2366 : 73417

Salmonella_phage(15.0%)

protease,tRNA,transposase,holin,tail,plate

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085044592.1\|2366_3005_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	9.3e-10	40.0
WP_043143990.1\|3653_4013_+\|plate	baseplate assembly protein	E5E3R0	Burkholderia_phage	4.1e-23	50.4
WP_096071815.1\|4909_5512_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	1.4e-28	36.4
WP_085044596.1\|5508_6264_+	hypothetical protein	A0A0A7RTP0	Clostridium_phage	2.3e-15	32.0
WP_157738319.1\|6550_6727_+	hypothetical protein	NA	NA	NA	NA
WP_096071817.1\|7148_8327_+\|tail	phage tail sheath protein	Q9ZXK4	Pseudomonas_virus	8.0e-132	60.6
WP_085044599.1\|8336_8852_+\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	6.3e-57	62.0
WP_085044600.1\|8918_9203_+\|tail	phage tail assembly protein	A4PE51	Ralstonia_virus	2.0e-20	57.3
WP_085044601.1\|9211_9343_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_085044602.1\|9339_12300_+\|tail	phage tail tape measure protein	A0A2H4JE61	uncultured_Caudovirales_phage	1.8e-111	53.3
WP_085044603.1\|12739_13318_+	Rha family transcriptional regulator	A0A0P0ZE80	Stx2-converting_phage	9.6e-30	53.7
WP_085044604.1\|13322_13814_+\|tail	phage tail protein	Q9ZXJ9	Pseudomonas_virus	4.2e-34	50.7
WP_085044605.1\|13813_14974_+	phage late control D family protein	A0A1S5NV58	Burkholderia_phage	2.2e-97	56.0
WP_005317863.1\|15184_15490_-	hypothetical protein	NA	NA	NA	NA
WP_005317866.1\|16080_17532_+	aminoacyl-histidine dipeptidase	NA	NA	NA	NA
WP_096071818.1\|17930_18050_+	hypothetical protein	NA	NA	NA	NA
WP_005317874.1\|18253_19261_-	dipeptide ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.9e-17	28.1
WP_042468552.1\|19257_20316_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	1.5e-07	26.8
WP_017412678.1\|20341_22159_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_017412677.1\|22309_23353_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_088814299.1\|24029_24947_+\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_157738362.1\|26408_27479_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_088822010.1\|27463_30088_+	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	4.0e-38	27.4
WP_017411857.1\|30196_30952_+	DUF3450 domain-containing protein	NA	NA	NA	NA
WP_005317892.1\|30948_32313_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA
WP_005317894.1\|32323_32851_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA
WP_005317897.1\|32918_33326_+	biopolymer transporter ExbD	NA	NA	NA	NA
WP_005317900.1\|33342_33978_+	energy transducer TonB	NA	NA	NA	NA
WP_042468813.1\|33989_35225_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_088814300.1\|35520_38520_-	chitinase	A0A1X9VNM7	Mimivirus	2.6e-25	29.1
WP_034283532.1\|39050_41195_+	ExeM/NucH family extracellular endonuclease	NA	NA	NA	NA
WP_042469031.1\|42155_43571_-\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
WP_017411852.1\|46046_46700_+	opacity-associated protein OapA	NA	NA	NA	NA
WP_005317918.1\|46971_47181_+	cold-shock protein	A0A1X9IGI9	Lactococcus_phage	4.8e-16	58.7
WP_005317921.1\|48655_49201_-	oligoribonuclease	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	2.7e-26	36.4
WP_017411851.1\|49247_50327_+	small ribosomal subunit biogenesis GTPase RsgA	NA	NA	NA	NA
WP_005317927.1\|50366_51239_+	phosphatidylserine decarboxylase	NA	NA	NA	NA
WP_005317929.1\|51235_51505_+	DUF2132 domain-containing protein	NA	NA	NA	NA
WP_005317932.1\|51494_51758_+	DUF2960 domain-containing protein	NA	NA	NA	NA
WP_005317936.1\|51760_52159_+	hypothetical protein	NA	NA	NA	NA
WP_005317941.1\|52391_52886_-	hypothetical protein	NA	NA	NA	NA
WP_005317944.1\|53057_55031_+	EAL domain-containing protein	G3MA91	Bacillus_virus	1.7e-09	25.9
WP_011898395.1\|55105_55453_-	ribonuclease E inhibitor RraB	NA	NA	NA	NA
WP_088814301.1\|55873_58150_+\|protease	M6 family metalloprotease domain-containing protein	NA	NA	NA	NA
WP_085941570.1\|58545_58680_-	hypothetical protein	NA	NA	NA	NA
WP_005317957.1\|58932_60150_-	hypothetical protein	NA	NA	NA	NA
WP_042468084.1\|60392_62072_-\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	8.7e-47	27.6
WP_042468083.1\|62081_63545_-	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_011898392.1\|64475_65753_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_042468082.1\|65852_69413_+	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	1.5e-11	23.5
WP_005317982.1\|69466_69676_-	YgdI/YgdR family lipoprotein	NA	NA	NA	NA
WP_005317984.1\|69964_71260_-	sulfurtransferase	NA	NA	NA	NA
WP_085941421.1\|71289_72222_-	glutaminase B	NA	NA	NA	NA
WP_042468081.1\|72339_72672_-	YggL family protein	NA	NA	NA	NA
WP_017412397.1\|72703_73417_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA

DBSCAN-SWA_2

112716 : 163752

Klosneuvirus(28.57%)

tRNA,transposase,integrase

attL 103604:103620|attR 156359:156375

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
103604:103620	attL	NA	NA	NA	NA
WP_005318109.1\|112716_113682_+\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
WP_005309538.1\|113707_114004_+	DNA-binding transcriptional regulator Fis	NA	NA	NA	NA
WP_005318113.1\|114079_114712_-	LysE family translocator	NA	NA	NA	NA
WP_017412815.1\|121830_122109_-	Pathogenicity locus	NA	NA	NA	NA
WP_088814398.1\|122181_122802_-	ribonuclease	NA	NA	NA	NA
WP_005320532.1\|123068_123629_+	carbonate dehydratase	NA	NA	NA	NA
WP_011899092.1\|123733_124066_+	hypothetical protein	NA	NA	NA	NA
WP_017412813.1\|124067_124508_+	hypothetical protein	NA	NA	NA	NA
WP_005320527.1\|124561_125470_-	S-adenosyl-l-methionine hydroxide adenosyltransferase family protein	NA	NA	NA	NA
WP_005320525.1\|125650_126109_+	hypothetical protein	NA	NA	NA	NA
WP_042468897.1\|126128_127361_-	MFS transporter	NA	NA	NA	NA
WP_005320516.1\|127585_128455_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_042468898.1\|128651_129914_+	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	2.2e-47	32.7
WP_042468899.1\|130002_131274_-	membrane protein	NA	NA	NA	NA
WP_076611341.1\|131747_132665_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_076611341.1\|132847_133765_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_034283822.1\|134323_135715_+	T3SS effector protein-tyrosine-phosphatase AopH	NA	NA	NA	NA
WP_076611341.1\|136256_137174_+\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_157738321.1\|137177_137825_-	hypothetical protein	NA	NA	NA	NA
WP_088814343.1\|137867_139004_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_096071822.1\|139077_139983_-	site-specific DNA-methyltransferase	A0A2K5B255	Erysipelothrix_phage	4.1e-75	58.8
WP_088814309.1\|140122_140374_-	hypothetical protein	NA	NA	NA	NA
WP_088814310.1\|140357_140996_-	recombinase family protein	A0A1V0E035	Clostridioides_phage	2.8e-06	27.5
WP_088814162.1\|141253_142171_+\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_080697447.1\|142660_142843_-	hypothetical protein	NA	NA	NA	NA
WP_042469229.1\|143007_143160_-	type I toxin-antitoxin system Hok family toxin	NA	NA	NA	NA
WP_076611341.1\|143762_144680_+\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_088814312.1\|144759_145626_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_042467552.1\|145795_147010_-\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	5.6e-88	45.0
WP_085941523.1\|147378_148023_+	RDD family protein	NA	NA	NA	NA
WP_005315733.1\|148095_149166_-	LPS export ABC transporter permease LptG	NA	NA	NA	NA
WP_088814399.1\|149191_150298_-	LPS export ABC transporter permease LptF	NA	NA	NA	NA
WP_005315744.1\|152160_152616_+	DNA polymerase III subunit chi	NA	NA	NA	NA
WP_042467555.1\|152681_155546_+\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	1.2e-136	36.0
WP_005315753.1\|157030_157696_+	DedA family protein	NA	NA	NA	NA
156359:156375	attR	NA	NA	NA	NA
WP_011899145.1\|157832_158660_+	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA
WP_005315760.1\|159581_159770_-	carbon storage regulator CsrA	A0A2I7RT00	Vibrio_phage	5.0e-12	66.7
WP_005315763.1\|159863_161111_-	aspartate kinase	NA	NA	NA	NA
WP_017412245.1\|161127_163752_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	3.3e-77	38.1

DBSCAN-SWA_3

229190 : 292262

Bacillus_thuringiensis_phage(37.5%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_076611341.1\|229190_230108_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_005315988.1\|230422_231802_+	ATP-dependent RNA helicase DbpA	E3T5E1	Cafeteria_roenbergensis_virus	1.7e-48	33.1
WP_005315990.1\|231916_232207_+	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_005315995.1\|232516_232915_-	hypothetical protein	NA	NA	NA	NA
WP_005315998.1\|233187_234615_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_042468800.1\|234698_234917_-	hypothetical protein	NA	NA	NA	NA
WP_085941516.1\|235027_235951_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA
WP_017412591.1\|236141_237497_+	isochorismate synthase	NA	NA	NA	NA
WP_042468798.1\|237533_239252_+	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA
WP_005316004.1\|239241_240000_+	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA
WP_096071823.1\|240162_241023_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA
WP_005316010.1\|241022_241940_+	o-succinylbenzoate synthase	NA	NA	NA	NA
WP_042468793.1\|241950_243357_+	AMP-binding protein	A0A1V0SBX8	Catovirus	5.1e-08	29.5
WP_088814343.1\|244519_245656_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_076611341.1\|246586_247504_+\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_076611341.1\|248224_249142_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_157738322.1\|249976_250231_+	hypothetical protein	NA	NA	NA	NA
WP_088814343.1\|250488_251625_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_005316030.1\|251835_252168_+	hypothetical protein	NA	NA	NA	NA
WP_088814317.1\|255595_256540_+	hypothetical protein	Q56AS0	Bacillus_thuringiensis_phage	7.3e-11	66.0
WP_005316045.1\|256605_257220_-	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	1.8e-98	85.1
WP_005316047.1\|257241_257667_-	hypothetical protein	Q56AR5	Bacillus_thuringiensis_phage	5.4e-22	64.9
WP_088814318.1\|257876_258878_+	triacylglycerol lipase	NA	NA	NA	NA
WP_005316050.1\|258874_259627_+	lipase chaperone	NA	NA	NA	NA
WP_042468855.1\|259885_260587_-	hypothetical protein	NA	NA	NA	NA
WP_005316053.1\|260633_261029_-	acyl-CoA thioesterase	NA	NA	NA	NA
WP_042468856.1\|261227_263405_-	catalase/peroxidase HPI	NA	NA	NA	NA
WP_005316058.1\|265378_265555_+	hypothetical protein	NA	NA	NA	NA
WP_042468341.1\|265719_266988_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	A0A0B5JD48	Pandoravirus	1.0e-15	26.4
WP_088814320.1\|267086_267725_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_088814321.1\|268033_269209_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_005316069.1\|269404_269986_+	hypothetical protein	NA	NA	NA	NA
WP_005316072.1\|270209_270662_-	hypothetical protein	NA	NA	NA	NA
WP_005316077.1\|271136_272609_+	C69 family dipeptidase	NA	NA	NA	NA
WP_034282173.1\|272671_273418_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_005316084.1\|273474_273720_-	DUF3624 family protein	NA	NA	NA	NA
WP_011899119.1\|273716_274262_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_005316090.1\|274450_275893_+	RimK family alpha-L-glutamate ligase	NA	NA	NA	NA
WP_011899118.1\|275920_276454_+	MgtC/SapB family protein	G3MA03	Bacillus_virus	1.6e-07	31.3
WP_042468339.1\|276509_278126_-	glycosidase	NA	NA	NA	NA
WP_042468338.1\|278275_280243_-	TonB-dependent copper receptor	NA	NA	NA	NA
WP_005316103.1\|280487_280745_-	DUF2442 domain-containing protein	NA	NA	NA	NA
WP_005316107.1\|281003_282968_+	LTA synthase family protein	NA	NA	NA	NA
WP_005316110.1\|283032_283503_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_085941511.1\|283619_284180_+	protein tyrosine phosphatase	NA	NA	NA	NA
WP_005316116.1\|284195_285140_-	homoserine O-succinyltransferase	NA	NA	NA	NA
WP_085941657.1\|285225_286524_+	DUF3391 domain-containing protein	NA	NA	NA	NA
WP_005316122.1\|286582_287746_+	CinA family nicotinamide mononucleotide deamidase-related protein	NA	NA	NA	NA
WP_005316125.1\|287789_288884_-	ABC transporter permease	NA	NA	NA	NA
WP_005316129.1\|288880_289810_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.2e-19	30.9
WP_085941510.1\|289802_290777_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_157669189.1\|291065_291296_+	hypothetical protein	NA	NA	NA	NA
WP_076611341.1\|291344_292262_+\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA

DBSCAN-SWA_4

324380 : 354231

Shigella_phage(50.0%)

integrase,transposase

attL 346328:346387|attR 350884:351947

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_088814343.1\|324380_325517_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_005316246.1\|326201_326519_+	hypothetical protein	NA	NA	NA	NA
WP_076611341.1\|326905_327823_+\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_080697428.1\|327847_328048_+	hypothetical protein	NA	NA	NA	NA
WP_088814324.1\|328951_330082_-	2-iminoacetate synthase ThiH	NA	NA	NA	NA
WP_005316273.1\|330171_330939_-	thiazole synthase	NA	NA	NA	NA
WP_005316276.1\|330940_331153_-	sulfur carrier protein ThiS	NA	NA	NA	NA
WP_042468928.1\|331149_331923_-	HesA/MoeB/ThiF family protein	NA	NA	NA	NA
WP_005316282.1\|331912_333487_-	thiamine phosphate synthase	NA	NA	NA	NA
WP_042468927.1\|333483_335490_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA
WP_088814325.1\|336533_337451_+\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_157668971.1\|337591_337927_-	hypothetical protein	NA	NA	NA	NA
WP_085941409.1\|337978_339140_+\|transposase	IS3-like element ISAs6 family transposase	Q716C2	Shigella_phage	2.8e-84	51.6
WP_076611341.1\|340081_340999_+\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_157668969.1\|341361_343131_-	hypothetical protein	NA	NA	NA	NA
WP_076611341.1\|343309_344227_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_034283822.1\|344482_345874_+	T3SS effector protein-tyrosine-phosphatase AopH	NA	NA	NA	NA
346328:346387	attL	NA	NA	NA	NA
WP_076611341.1\|346415_347333_+\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_139403308.1\|347749_348139_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_017413139.1\|348051_348438_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_005320985.1\|348506_348737_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_005320982.1\|348733_349147_+	PIN domain-containing protein	NA	NA	NA	NA
WP_017413138.1\|349224_349578_+	hypothetical protein	NA	NA	NA	NA
WP_076611341.1\|349937_350855_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_088814123.1\|351089_352007_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
350884:351947	attR	NA	NA	NA	NA
WP_011898961.1\|353016_354231_-\|transposase	IS256-like element ISAs3 family transposase	A0A218MNI5	uncultured_virus	4.3e-48	47.9

DBSCAN-SWA_5

648383 : 685527

Sodalis_phage(11.11%)

protease,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011899080.1\|648383_649415_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_005318424.1\|650167_650344_+	hypothetical protein	NA	NA	NA	NA
WP_042467792.1\|650443_651091_+	AAA family ATPase	Q2A085	Sodalis_phage	9.1e-45	47.0
WP_005318419.1\|651092_651461_+	hypothetical protein	NA	NA	NA	NA
WP_011898961.1\|652010_653225_-\|transposase	IS256-like element ISAs3 family transposase	A0A218MNI5	uncultured_virus	4.3e-48	47.9
WP_042468289.1\|653399_655127_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	4.2e-12	34.2
WP_017412477.1\|655178_656189_-	galactose/methyl galactoside ABC transporter permease MglC	NA	NA	NA	NA
WP_005318415.1\|656205_657726_-	galactose/methyl galactoside ABC transporter ATP-binding protein MglA	F2Y2R6	Organic_Lake_phycodnavirus	1.4e-11	32.2
WP_042468288.1\|657779_658766_-	galactose/glucose ABC transporter substrate-binding protein MglB	NA	NA	NA	NA
WP_042468286.1\|659000_662078_-	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	53.1
WP_011898254.1\|662296_663301_-	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_005318411.1\|663505_664519_+	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	1.1e-84	47.1
WP_042468290.1\|664602_665661_+	UDP-glucose--hexose-1-phosphate uridylyltransferase	NA	NA	NA	NA
WP_005318407.1\|665657_666806_+	galactokinase	NA	NA	NA	NA
WP_005318405.1\|666897_667878_+	galactose-1-epimerase	NA	NA	NA	NA
WP_017412482.1\|668029_669025_+	glyceraldehyde 3-phosphate reductase	NA	NA	NA	NA
WP_005318402.1\|669283_670099_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA
WP_005318399.1\|670162_670840_-	transcriptional regulator	NA	NA	NA	NA
WP_011898253.1\|670832_671453_-	sigma-70 family RNA polymerase sigma factor	A0A0F6TH34	Sinorhizobium_phage	2.3e-05	26.7
WP_085941393.1\|671534_672194_-\|protease	ATP-dependent protease	NA	NA	NA	NA
WP_017413000.1\|672414_674160_+\|tRNA	arginine--tRNA ligase	A0A1V0SIS8	Klosneuvirus	5.4e-84	35.7
WP_005318391.1\|674163_674991_+	cell division protein	NA	NA	NA	NA
WP_005318389.1\|675182_675716_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_042468283.1\|675780_677109_+	HslU--HslV peptidase ATPase subunit	A0A2H5BJT2	Erwinia_phage	3.4e-46	29.9
WP_005318384.1\|677182_678577_-	MFS transporter	NA	NA	NA	NA
WP_042468281.1\|678767_679688_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_088814113.1\|679945_682531_+	nitrite reductase large subunit	NA	NA	NA	NA
WP_076611341.1\|682575_683493_+\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_088814343.1\|684390_685527_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA

DBSCAN-SWA_6

940424 : 961742

Planktothrix_phage(25.0%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_017411790.1\|940424_941258_-\|protease	rhomboid family intramembrane serine protease GlpG	NA	NA	NA	NA
WP_005320656.1\|941254_941578_-	thiosulfate sulfurtransferase GlpE	NA	NA	NA	NA
WP_017411789.1\|941747_942341_+	LysE family translocator	NA	NA	NA	NA
WP_005320652.1\|942319_943168_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_042468106.1\|943171_943873_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	1.6e-15	27.7
WP_042468107.1\|943889_944666_-	ABC transporter ATP-binding protein	A0A285PWH2	Cedratvirus	1.6e-11	26.8
WP_005320647.1\|944662_945931_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA
WP_005320646.1\|945927_946854_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA
WP_088814406.1\|946917_948021_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_005320642.1\|948474_949479_+	substrate-binding domain-containing protein	C6ZCU4	Enterobacteria_phage	9.5e-33	33.1
WP_005320640.1\|949559_950879_-	6-phospho-alpha-glucosidase	NA	NA	NA	NA
WP_088814136.1\|951877_952795_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_157668974.1\|953540_953921_+	hypothetical protein	NA	NA	NA	NA
WP_088814108.1\|953943_954861_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_011898961.1\|955235_956450_-\|transposase	IS256-like element ISAs3 family transposase	A0A218MNI5	uncultured_virus	4.3e-48	47.9
WP_096072027.1\|956515_957778_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_005321603.1\|957977_958403_-	chaperonin	NA	NA	NA	NA
WP_034283822.1\|958599_959991_+	T3SS effector protein-tyrosine-phosphatase AopH	NA	NA	NA	NA
WP_088814129.1\|960824_961742_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA

DBSCAN-SWA_7

1253742 : 1286261

Bacillus_phage(40.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_088814123.1\|1253742_1254660_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_088814123.1\|1256536_1257454_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_005316589.1\|1257593_1257992_-	hypothetical protein	NA	NA	NA	NA
WP_005316586.1\|1258040_1259054_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_088814343.1\|1259271_1260408_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_096071864.1\|1260615_1261248_-	porin family protein	NA	NA	NA	NA
WP_076611341.1\|1261344_1262262_+\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_005316576.1\|1264114_1264453_-	P-II family nitrogen regulator	NA	NA	NA	NA
WP_005316573.1\|1264951_1265953_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	5.2e-15	32.4
WP_005316571.1\|1266127_1266556_+	hypothetical protein	NA	NA	NA	NA
WP_005316549.1\|1269768_1271184_+	sensor domain-containing diguanylate cyclase	NA	NA	NA	NA
WP_005316548.1\|1273583_1273796_-	RNA chaperone/antiterminator CspA	A0A1W6JNX5	Morganella_phage	1.1e-23	78.6
WP_088814346.1\|1274348_1275896_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.0e-17	32.1
WP_005316537.1\|1276178_1279007_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	5.2e-312	56.2
WP_017412640.1\|1279102_1279735_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_005316531.1\|1280254_1280845_+	single-stranded DNA-binding protein	R9TR60	Vibrio_phage	1.0e-55	59.5
WP_005316528.1\|1281013_1281772_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_005316524.1\|1281847_1281970_-	hypothetical protein	NA	NA	NA	NA
WP_076611341.1\|1282603_1283521_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_085941665.1\|1284410_1284680_+	DUF3811 domain-containing protein	NA	NA	NA	NA
WP_155268759.1\|1284740_1284902_-	hypothetical protein	NA	NA	NA	NA
WP_076611341.1\|1285343_1286261_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA

DBSCAN-SWA_8

1347176 : 1394202

uncultured_Caudovirales_phage(28.57%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_088814129.1\|1347176_1348094_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_088814130.1\|1348138_1348522_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_076611341.1\|1348578_1349496_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_005314155.1\|1349927_1350785_-	carboxylating nicotinate-nucleotide diphosphorylase	NA	NA	NA	NA
WP_088814131.1\|1350789_1351317_-\|protease	clan AA aspartic protease	NA	NA	NA	NA
WP_096071866.1\|1351437_1351983_+	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	A0A076YN96	Rhizobium_phage	3.0e-09	30.4
WP_005314150.1\|1352260_1353025_+	pyruvate dehydrogenase complex transcriptional repressor PdhR	NA	NA	NA	NA
WP_005314149.1\|1353104_1355765_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA
WP_042468130.1\|1355850_1357722_+	pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA
WP_005314147.1\|1357882_1359310_+	dihydrolipoyl dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	2.7e-41	26.9
WP_042468131.1\|1359439_1360396_+	sensor domain-containing diguanylate cyclase	G3MA91	Bacillus_virus	5.0e-15	30.9
WP_005314145.1\|1360392_1360575_-	hypothetical protein	NA	NA	NA	NA
WP_096071867.1\|1360710_1362357_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.1e-17	61.3
WP_017411941.1\|1362520_1364431_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.0e-19	30.3
WP_005314141.1\|1364689_1366948_+	patatin-like phospholipase domain-containing protein	A0A1V0SFX9	Hokovirus	2.0e-06	27.4
WP_042468133.1\|1367176_1369774_+	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	NA	NA	NA	NA
WP_042468134.1\|1370106_1371690_+	EAL domain-containing protein	NA	NA	NA	NA
WP_042468135.1\|1371944_1372694_-	3-oxoacyl-ACP reductase FabG	NA	NA	NA	NA
WP_042468136.1\|1372870_1373794_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_042468137.1\|1373865_1374777_-	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	2.4e-14	27.0
WP_088814132.1\|1374854_1375472_+	LysE family transporter	NA	NA	NA	NA
WP_005314125.1\|1375589_1376984_+	FAD-binding protein	NA	NA	NA	NA
WP_088814347.1\|1377064_1378183_+	GTP-binding protein	NA	NA	NA	NA
WP_005314122.1\|1379636_1380125_-	YbaK/EbsC family protein	NA	NA	NA	NA
WP_005314121.1\|1380249_1380759_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_005314120.1\|1380811_1381183_-	dihydroneopterin aldolase	NA	NA	NA	NA
WP_011898298.1\|1381352_1382015_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_005314116.1\|1382609_1382942_-	hypothetical protein	NA	NA	NA	NA
WP_005314114.1\|1383072_1383588_+	ClbS/DfsB family four-helix bundle protein	NA	NA	NA	NA
WP_005314112.1\|1384049_1384268_+	hypothetical protein	NA	NA	NA	NA
WP_005314110.1\|1384280_1384805_+	hypothetical protein	NA	NA	NA	NA
WP_005314108.1\|1384824_1385319_+	hypothetical protein	NA	NA	NA	NA
WP_005314106.1\|1385385_1385832_+	DUF2787 domain-containing protein	NA	NA	NA	NA
WP_076611341.1\|1386296_1387214_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_076611341.1\|1389356_1390274_+\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_005314088.1\|1390554_1390986_+	SMI1/KNR4 family protein	NA	NA	NA	NA
WP_076611341.1\|1393284_1394202_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA

DBSCAN-SWA_9

1767298 : 1836238

Shigella_phage(20.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085941409.1\|1767298_1768460_+\|transposase	IS3-like element ISAs6 family transposase	Q716C2	Shigella_phage	2.8e-84	51.6
WP_005318620.1\|1768666_1770814_+	S9 family peptidase	A0A1V0SHT0	Klosneuvirus	1.8e-65	32.1
WP_042468997.1\|1771029_1773183_+	AsmA family protein	NA	NA	NA	NA
WP_005318627.1\|1773357_1773897_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_042468996.1\|1773969_1774704_+	SDR family oxidoreductase	A0A0M4JSW6	Mollivirus	4.7e-05	26.9
WP_076611341.1\|1775688_1776606_+\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_076611341.1\|1777768_1778686_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_005318643.1\|1778959_1779316_+	glucitol operon activator	NA	NA	NA	NA
WP_011899087.1\|1779405_1780170_+	DNA-binding transcriptional repressor	NA	NA	NA	NA
WP_088814148.1\|1780404_1783287_-	bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase	NA	NA	NA	NA
WP_005318651.1\|1783529_1783976_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_042468127.1\|1784047_1785202_-	chromate efflux transporter	NA	NA	NA	NA
WP_017411818.1\|1785300_1785744_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_042468126.1\|1785945_1786950_-	NADP-dependent oxidoreductase	NA	NA	NA	NA
WP_088814149.1\|1786946_1787423_-	organic hydroperoxide resistance protein	NA	NA	NA	NA
WP_005318661.1\|1787536_1787962_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_005318662.1\|1787996_1788224_+	hypothetical protein	NA	NA	NA	NA
WP_005318663.1\|1788370_1788688_+	hypothetical protein	NA	NA	NA	NA
WP_005318665.1\|1788855_1789332_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_005318667.1\|1789640_1790264_-	transcriptional regulator	NA	NA	NA	NA
WP_005318669.1\|1790447_1791686_+	MFS transporter	NA	NA	NA	NA
WP_017411815.1\|1791826_1792648_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_005318675.1\|1792788_1793352_-	DUF2799 domain-containing protein	NA	NA	NA	NA
WP_005318677.1\|1793557_1794397_+	isopenicillin N synthase family oxygenase	NA	NA	NA	NA
WP_011899085.1\|1795886_1796654_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_005318684.1\|1797021_1798335_+	sodium-dependent transporter	NA	NA	NA	NA
WP_011899084.1\|1800117_1800843_-	DUF3142 domain-containing protein	NA	NA	NA	NA
WP_042468123.1\|1800812_1802873_-	hypothetical protein	NA	NA	NA	NA
WP_005318694.1\|1802984_1803449_-	hypothetical protein	NA	NA	NA	NA
WP_096071881.1\|1803516_1804893_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_005318697.1\|1805009_1805606_+	LysE family translocator	NA	NA	NA	NA
WP_042468121.1\|1805721_1806312_+	LysE family translocator	NA	NA	NA	NA
WP_042468120.1\|1806466_1807165_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA
WP_005318702.1\|1807287_1808394_+	acyltransferase	NA	NA	NA	NA
WP_005318704.1\|1808697_1809168_+	YhcH/YjgK/YiaL family protein	NA	NA	NA	NA
WP_005318706.1\|1809385_1810585_+	acetate kinase	NA	NA	NA	NA
WP_005318708.1\|1810718_1811969_+	mechanosensitive ion channel	NA	NA	NA	NA
WP_042468119.1\|1812146_1813073_+	L,D-transpeptidase family protein	NA	NA	NA	NA
WP_005318714.1\|1813361_1814882_+	sodium/proline symporter PutP	NA	NA	NA	NA
WP_076611341.1\|1815881_1816799_+\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_042468750.1\|1817172_1817442_-	hypothetical protein	NA	NA	NA	NA
WP_139403094.1\|1818008_1818824_-	hypothetical protein	NA	NA	NA	NA
WP_005318756.1\|1819622_1820477_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA
WP_085941653.1\|1820470_1820914_-	DUF2390 domain-containing protein	NA	NA	NA	NA
WP_005318760.1\|1820924_1822835_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	3.6e-73	33.0
WP_005318762.1\|1822989_1823400_+	CBS domain-containing protein	NA	NA	NA	NA
WP_005318764.1\|1823478_1823934_-	NfeD family protein	NA	NA	NA	NA
WP_005318765.1\|1823930_1824854_-	SPFH/Band 7/PHB domain protein	NA	NA	NA	NA
WP_096071882.1\|1825117_1826494_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_005318769.1\|1826625_1827579_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA
WP_005318771.1\|1827590_1829006_+	sulfate adenylyltransferase subunit CysN	A0A1V0SGC3	Hokovirus	4.6e-33	28.5
WP_005318772.1\|1829010_1830735_+	SLC13 family permease	NA	NA	NA	NA
WP_005318774.1\|1830906_1831497_+	adenylyl-sulfate kinase	NA	NA	NA	NA
WP_088814343.1\|1831884_1833021_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_088814152.1\|1833376_1834915_-	NACHT domain-containing protein	NA	NA	NA	NA
WP_088814153.1\|1835320_1836238_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA

DBSCAN-SWA_10

1885464 : 1895388

uncultured_Mediterranean_phage(25.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005318886.1\|1885464_1886211_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	9.7e-67	52.0
WP_005318888.1\|1886215_1886833_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	9.0e-34	46.4
WP_085941649.1\|1886835_1887399_+	DedA family protein	NA	NA	NA	NA
WP_005318892.1\|1887408_1888455_+	peptidoglycan DD-metalloendopeptidase family protein	A0A0A7NU10	Lactobacillus_phage	7.9e-14	41.3
WP_042467924.1\|1888502_1889486_+	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	7.6e-35	34.1
WP_005318896.1\|1889571_1890585_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	1.5e-107	58.0
WP_005309452.1\|1890764_1890980_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_005318899.1\|1890995_1891439_+	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	1.3e-26	47.9
WP_005318901.1\|1891527_1893315_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.4e-73	41.1
WP_080697382.1\|1893528_1895388_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-34	32.6

DBSCAN-SWA_11

2157150 : 2195252

Phage_21(25.0%)

integrase,transposase

attL 2168719:2168734|attR 2200951:2200966

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_076611341.1\|2157150_2158068_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_005312712.1\|2159740_2161102_-	MFS transporter	NA	NA	NA	NA
WP_005312708.1\|2161292_2162186_-	protoheme IX farnesyltransferase	NA	NA	NA	NA
WP_021138023.1\|2163149_2165126_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_011898946.1\|2165129_2166155_-	cytochrome o ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_096071895.1\|2166763_2168689_+	NAD(P)-binding protein	NA	NA	NA	NA
WP_088814167.1\|2168685_2169885_+	cytochrome c	NA	NA	NA	NA
2168719:2168734	attL	NA	NA	NA	NA
WP_076611341.1\|2170145_2171063_+\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_005312718.1\|2171809_2172913_-	YdcF family protein	NA	NA	NA	NA
WP_034283370.1\|2173193_2174414_-	prolyl oligopeptidase family serine peptidase	NA	NA	NA	NA
WP_005312724.1\|2174765_2175803_-	Mal regulon transcriptional regulator MalI	NA	NA	NA	NA
WP_005312727.1\|2176119_2177691_+	PTS maltose transporter subunit IICB	NA	NA	NA	NA
WP_076611341.1\|2178351_2179269_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_088814343.1\|2180170_2181307_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_005312736.1\|2182088_2182379_-	hypothetical protein	NA	NA	NA	NA
WP_042468934.1\|2182646_2184554_-	PTS fructose transporter subunit EIIC	NA	NA	NA	NA
WP_005312738.1\|2185262_2185418_+	hypothetical protein	NA	NA	NA	NA
WP_017412946.1\|2185646_2186846_-	mannose-6-phosphate isomerase, class I	NA	NA	NA	NA
WP_088822015.1\|2186963_2187854_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_005312750.1\|2188055_2189309_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	2.1e-13	70.4
WP_005312753.1\|2189384_2189561_-	hypothetical protein	NA	NA	NA	NA
WP_088814108.1\|2189856_2190774_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_005312795.1\|2190897_2191164_-	hypothetical protein	NA	NA	NA	NA
WP_005312798.1\|2191308_2191728_-	hypothetical protein	NA	NA	NA	NA
WP_005312801.1\|2191724_2192336_-	hypothetical protein	NA	NA	NA	NA
WP_026141826.1\|2192346_2192697_-	hypothetical protein	NA	NA	NA	NA
WP_005312807.1\|2192706_2192925_-	AlpA family transcriptional regulator	B7SYF9	Stenotrophomonas_phage	1.6e-09	50.0
WP_042468226.1\|2193036_2193888_-	hypothetical protein	A0A2H4JEC4	uncultured_Caudovirales_phage	2.0e-07	24.9
WP_088814169.1\|2194001_2195252_-\|integrase	tyrosine-type recombinase/integrase	A0A1V0E8G8	Vibrio_phage	2.8e-111	46.3
2200951:2200966	attR	NA	NA	NA	NA

DBSCAN-SWA_12

2249449 : 2396623

116

Acinetobacter_phage(10.53%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_076611341.1\|2249449_2250367_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_042468543.1\|2250476_2252123_+	NAD(P)-binding protein	NA	NA	NA	NA
WP_042468541.1\|2252119_2255695_+	pyruvate:ferredoxin (flavodoxin) oxidoreductase	NA	NA	NA	NA
WP_005313020.1\|2255875_2256091_-	DUF465 domain-containing protein	NA	NA	NA	NA
WP_005313022.1\|2256376_2256967_-	hypothetical protein	NA	NA	NA	NA
WP_042468540.1\|2256978_2258325_-	MATE family efflux transporter	NA	NA	NA	NA
WP_017411715.1\|2258460_2260284_-	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	9.2e-18	27.4
WP_005313033.1\|2260354_2260948_-	nucleotidyltransferase family protein	NA	NA	NA	NA
WP_005313036.1\|2260937_2261195_-	N-acetyltransferase	NA	NA	NA	NA
WP_017411716.1\|2261329_2262244_+	cysteine synthase CysM	A0A1X9I5K7	Streptococcus_phage	2.3e-49	39.5
WP_096071898.1\|2262729_2263914_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_005313047.1\|2263931_2264450_-	hypothetical protein	NA	NA	NA	NA
WP_005313049.1\|2264430_2265033_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_005313052.1\|2265053_2266487_-	coniferyl aldehyde dehydrogenase	NA	NA	NA	NA
WP_005313055.1\|2266700_2266994_+	hypothetical protein	NA	NA	NA	NA
WP_042468535.1\|2267063_2267510_-	peptidase P60	NA	NA	NA	NA
WP_042468534.1\|2268394_2270260_+	hemolysin Ahh1	NA	NA	NA	NA
WP_005313062.1\|2270329_2271238_-	hydrogen peroxide-inducible genes activator	NA	NA	NA	NA
WP_011899080.1\|2271353_2272385_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_005319290.1\|2272518_2274687_+	chemotaxis protein CheA	NA	NA	NA	NA
WP_005319287.1\|2274719_2275835_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA
WP_088814283.1\|2275843_2276575_+	flagellar motor protein	NA	NA	NA	NA
WP_005319281.1\|2276577_2277495_+	OmpA family protein	NA	NA	NA	NA
WP_042468425.1\|2277499_2278294_+	ParA family protein	Q8JL10	Natrialba_phage	3.7e-16	34.0
WP_011898512.1\|2278290_2279163_+	chemotaxis protein W	NA	NA	NA	NA
WP_042468424.1\|2279232_2279721_+	chemotaxis protein CheW	NA	NA	NA	NA
WP_043134707.1\|2279739_2280126_+	DUF2802 domain-containing protein	NA	NA	NA	NA
WP_155268749.1\|2280120_2280276_-	hypothetical protein	NA	NA	NA	NA
WP_005319269.1\|2280290_2280926_+	cytochrome c biogenesis heme-transporting ATPase CcmA	G3M9Y6	Bacillus_virus	8.7e-16	29.4
WP_005319265.1\|2280930_2281599_+	heme exporter protein CcmB	NA	NA	NA	NA
WP_005319261.1\|2281762_2282503_+	heme ABC transporter permease	NA	NA	NA	NA
WP_005319258.1\|2282505_2282712_+	heme exporter protein CcmD	NA	NA	NA	NA
WP_157738364.1\|2282739_2283201_+	cytochrome c maturation protein CcmE	NA	NA	NA	NA
WP_005319252.1\|2283283_2285239_+	heme lyase CcmF/NrfE family subunit	NA	NA	NA	NA
WP_005319248.1\|2285235_2285766_+	DsbE family thiol:disulfide interchange protein	NA	NA	NA	NA
WP_005319244.1\|2285777_2286257_+	cytochrome c-type biogenesis protein CcmH	NA	NA	NA	NA
WP_005319239.1\|2286253_2287522_+	c-type cytochrome biogenesis protein CcmI	NA	NA	NA	NA
WP_088814393.1\|2287623_2288412_+	hypothetical protein	NA	NA	NA	NA
WP_005319233.1\|2288528_2289113_-	superoxide dismutase [Fe]	Q56AR7	Bacillus_thuringiensis_phage	1.6e-40	42.6
WP_005319230.1\|2289399_2289744_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA
WP_005319227.1\|2289809_2291021_-	RsmB/NOP family class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA
WP_096071899.1\|2291183_2293208_+	hypothetical protein	NA	NA	NA	NA
WP_005319219.1\|2293204_2293528_+	hypothetical protein	NA	NA	NA	NA
WP_042468418.1\|2293689_2294328_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA
WP_017412878.1\|2294375_2294990_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_076611341.1\|2296873_2297791_+\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_076611341.1\|2298637_2299555_+\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_042468764.1\|2299717_2300848_-	cupin domain-containing protein	NA	NA	NA	NA
WP_096071900.1\|2301024_2302395_-	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	2.4e-111	47.1
WP_042468762.1\|2302570_2303182_-	high frequency lysogenization protein HflD	NA	NA	NA	NA
WP_005319178.1\|2303379_2304486_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_011898520.1\|2304804_2305266_-	NUDIX hydrolase	A0A023W5N2	Serratia_phage	8.5e-05	62.2
WP_088814280.1\|2305280_2306255_-	pseudouridine synthase	NA	NA	NA	NA
WP_042468761.1\|2306325_2307093_-	PTS transporter subunit EIIA	NA	NA	NA	NA
WP_005319168.1\|2307093_2307399_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_042468759.1\|2309486_2311394_-	PTS transporter subunit EIIA	NA	NA	NA	NA
WP_096072033.1\|2312636_2313152_-	AAA family ATPase	NA	NA	NA	NA
WP_073531805.1\|2313290_2313800_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_076611341.1\|2314557_2315475_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_076611341.1\|2316432_2317350_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_088814278.1\|2317523_2318686_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	3.0e-83	51.0
WP_017412279.1\|2318901_2319708_-	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_042467948.1\|2319704_2320898_-	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_011898522.1\|2320983_2322369_-	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	NA	NA	NA	NA
WP_005319138.1\|2322479_2323493_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	1.9e-49	37.8
WP_005319135.1\|2323503_2324103_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	3.0e-26	36.3
WP_011898523.1\|2324095_2325733_-	anthranilate synthase component 1	NA	NA	NA	NA
WP_005319129.1\|2326169_2327051_+	PHP domain-containing protein	NA	NA	NA	NA
WP_005319127.1\|2327187_2327808_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
WP_085941581.1\|2327713_2328685_+	segregation/condensation protein A	NA	NA	NA	NA
WP_005319123.1\|2328783_2329353_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	6.8e-20	36.3
WP_042467947.1\|2329495_2330419_+	23S rRNA pseudouridine(2605) synthase RluB	NA	NA	NA	NA
WP_005319118.1\|2330622_2331486_+	acyl-CoA thioesterase II	NA	NA	NA	NA
WP_005319114.1\|2331549_2332728_-	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA
WP_080697387.1\|2332845_2333532_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_017412282.1\|2333734_2334376_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_096071901.1\|2334519_2335689_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_042467946.1\|2338848_2340255_+	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_005319091.1\|2341004_2342105_+	dTDP-glucose 4,6-dehydratase	A0A291LAD7	Escherichia_phage	7.8e-97	51.7
WP_005319088.1\|2342104_2342992_+	dTDP-4-dehydrorhamnose reductase	I7HXC9	Enterobacteria_phage	4.0e-27	35.0
WP_005319086.1\|2343104_2343983_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	4.8e-105	63.4
WP_080697385.1\|2344597_2345383_+	ABC transporter permease	NA	NA	NA	NA
WP_011898526.1\|2345396_2347055_+	type II/IV secretion system protein	NA	NA	NA	NA
WP_005319078.1\|2347051_2348239_+	type II secretion system F family protein	NA	NA	NA	NA
WP_005319076.1\|2348222_2348654_+	type II secretion system major pseudopilin GspG	NA	NA	NA	NA
WP_157668963.1\|2348674_2349049_+	hypothetical protein	NA	NA	NA	NA
WP_080697384.1\|2349032_2349431_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_011898528.1\|2349420_2350128_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_129712397.1\|2350154_2350991_+	hypothetical protein	NA	NA	NA	NA
WP_005319069.1\|2352101_2352731_+	hypothetical protein	NA	NA	NA	NA
WP_157738332.1\|2353211_2355251_+	secretin	NA	NA	NA	NA
WP_096071902.1\|2355702_2357211_+	S-layer protein	NA	NA	NA	NA
WP_011898533.1\|2357413_2358730_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	7.6e-14	27.2
WP_005319053.1\|2361621_2362941_+	glycosyltransferase	A0A1V0SAH6	Catovirus	6.7e-10	35.5
WP_005319049.1\|2364062_2365130_+	hypothetical protein	NA	NA	NA	NA
WP_096071903.1\|2365629_2366493_+	hypothetical protein	NA	NA	NA	NA
WP_005319045.1\|2366476_2367523_+	acyltransferase	NA	NA	NA	NA
WP_088814343.1\|2367589_2368726_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_080697441.1\|2369391_2371122_+	SLC13 family permease	NA	NA	NA	NA
WP_073531788.1\|2371237_2371441_+	hypothetical protein	NA	NA	NA	NA
WP_088814343.1\|2371564_2372701_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_011898536.1\|2372980_2373775_+	glycosyl transferase	NA	NA	NA	NA
WP_005319037.1\|2373774_2374731_+	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_005319035.1\|2374730_2375756_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_096071904.1\|2375752_2377738_+	polysaccharide biosynthesis protein	A0A1V0SAI8	Catovirus	1.8e-19	27.1
WP_139403327.1\|2377761_2378124_+	hypothetical protein	NA	NA	NA	NA
WP_076611341.1\|2378526_2379444_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_088814343.1\|2380444_2381581_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_005319007.1\|2384749_2385403_+	DUF480 domain-containing protein	NA	NA	NA	NA
WP_011898541.1\|2385628_2389471_+	DEAD/DEAH box helicase	G8DDA1	Micromonas_pusilla_virus	6.4e-45	30.3
WP_017412739.1\|2389644_2390538_-	DNA replication terminus site-binding protein	NA	NA	NA	NA
WP_017412738.1\|2391059_2391269_+	DUF1127 domain-containing protein	NA	NA	NA	NA
WP_005320264.1\|2391548_2392574_+	succinylglutamate desuccinylase	NA	NA	NA	NA
WP_005320262.1\|2392848_2393943_+	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	NA	NA	NA	NA
WP_005320258.1\|2394045_2395032_+	alpha-ketoacid dehydrogenase subunit beta	A0A0K0KW14	Prochlorococcus_phage	1.8e-07	28.8
WP_076611341.1\|2395705_2396623_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA

DBSCAN-SWA_13

2501522 : 2557574

Moumouvirus(12.5%)

protease,tRNA,transposase,integrase

attL 2552222:2552281|attR 2566785:2567857

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_042467323.1\|2501522_2502899_+\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	8.7e-45	33.5
WP_011899080.1\|2503136_2504168_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_088814123.1\|2504866_2505784_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_005314572.1\|2506668_2506977_+	hypothetical protein	NA	NA	NA	NA
WP_042467985.1\|2507673_2508687_+	GGDEF domain-containing protein	G3MA91	Bacillus_virus	3.8e-13	29.8
WP_034282846.1\|2508905_2509652_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_017412979.1\|2509767_2510514_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_005314576.1\|2510587_2511091_-	GDYXXLXY domain-containing protein	NA	NA	NA	NA
WP_005314577.1\|2511087_2512095_-	DUF4401 domain-containing protein	NA	NA	NA	NA
WP_005314578.1\|2512131_2513070_-	DUF2157 domain-containing protein	NA	NA	NA	NA
WP_005314579.1\|2513322_2513880_-	TMEM165/GDT1 family protein	NA	NA	NA	NA
WP_085941442.1\|2514124_2514499_-	stress response translation initiation inhibitor YciH	NA	NA	NA	NA
WP_005314583.1\|2514573_2514801_+	ferrous iron transport protein A	NA	NA	NA	NA
WP_096071910.1\|2514797_2517068_+	Fe(2+) transporter permease subunit FeoB	NA	NA	NA	NA
WP_017412111.1\|2517064_2517307_+	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_088814387.1\|2517402_2517894_-	WbuC family cupin fold metalloprotein	NA	NA	NA	NA
WP_088814267.1\|2518027_2519299_-	glucose-1-phosphate adenylyltransferase	NA	NA	NA	NA
WP_042467989.1\|2519572_2520712_-	PilT/PilU family type 4a pilus ATPase	NA	NA	NA	NA
WP_005314602.1\|2520771_2521128_-	DMT family protein	NA	NA	NA	NA
WP_005314604.1\|2521239_2521971_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_005314605.1\|2522074_2523082_+	vitamin B12 ABC transporter permease BtuC	NA	NA	NA	NA
WP_034282866.1\|2523180_2523951_+	ATP-binding cassette domain-containing protein	A0A1M7XV31	Cedratvirus	6.0e-11	30.3
WP_017412107.1\|2524067_2525129_-	3-deoxy-7-phosphoheptulonate synthase	S4VUY9	Pandoravirus	9.2e-87	50.0
WP_005314618.1\|2525283_2525664_+	diacylglycerol kinase	NA	NA	NA	NA
WP_005314621.1\|2525848_2527081_-	phosphoglycerate dehydrogenase	A0A1V0SBV6	Catovirus	6.9e-110	48.9
WP_005314623.1\|2527309_2527963_-	ribose-5-phosphate isomerase RpiA	NA	NA	NA	NA
WP_005314624.1\|2528218_2528827_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA
WP_005314627.1\|2528981_2530316_-	Na+/H+ antiporter NhaC family protein	NA	NA	NA	NA
WP_017412106.1\|2530726_2531695_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_005314633.1\|2531942_2532755_+	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA
WP_005314635.1\|2533432_2534584_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	1.4e-48	32.9
WP_017412104.1\|2534600_2537825_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA
WP_005314639.1\|2538357_2540016_+	2-isopropylmalate synthase	NA	NA	NA	NA
WP_096071911.1\|2540232_2541399_+	DUF1615 domain-containing protein	NA	NA	NA	NA
WP_005314653.1\|2543194_2544049_-	DNA-binding protein	A0A2R2ZH57	Clostridioides_phage	3.2e-21	28.8
WP_017413053.1\|2544425_2545388_-	autotransporter domain-containing protein	NA	NA	NA	NA
WP_042467992.1\|2545710_2546376_+	DedA family protein	NA	NA	NA	NA
WP_017413054.1\|2546490_2547024_+	spermidine N1-acetyltransferase	NA	NA	NA	NA
WP_088814386.1\|2547367_2548594_+	DEAD/DEAH box helicase	A0A1B1IS59	uncultured_Mediterranean_phage	9.1e-46	29.2
WP_005314666.1\|2548731_2549376_+	DUF2913 family protein	NA	NA	NA	NA
WP_087757302.1\|2550836_2551268_+\|protease	protease	NA	NA	NA	NA
2552222:2552281	attL	NA	NA	NA	NA
WP_076611341.1\|2552310_2553228_+\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_157668962.1\|2553250_2553649_-	hypothetical protein	NA	NA	NA	NA
WP_139403285.1\|2553781_2555545_-	hypothetical protein	NA	NA	NA	NA
WP_139742367.1\|2555564_2556317_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_088814343.1\|2556437_2557574_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA
2566785:2567857	attR	NA	NA	NA	NA

DBSCAN-SWA_14

2565837 : 2639400

Bacillus_virus(20.0%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_076611341.1\|2565837_2566755_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_052521856.1\|2566952_2567315_-	hypothetical protein	NA	NA	NA	NA
WP_088814108.1\|2568821_2569739_+\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_005310451.1\|2570244_2571537_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_005310453.1\|2571744_2572062_+	heavy metal-binding domain-containing protein	NA	NA	NA	NA
WP_005310455.1\|2572230_2572989_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_005310456.1\|2573180_2574194_+	LD-carboxypeptidase	NA	NA	NA	NA
WP_017411374.1\|2574264_2576538_-	alkaline phosphatase family protein	NA	NA	NA	NA
WP_058406197.1\|2576790_2577879_+	hypothetical protein	NA	NA	NA	NA
WP_042468726.1\|2577970_2579323_-	lysine-sensitive aspartokinase 3	NA	NA	NA	NA
WP_017411372.1\|2579745_2581074_-	amino-acid N-acetyltransferase	NA	NA	NA	NA
WP_017411371.1\|2581344_2581977_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA
WP_085941476.1\|2582333_2582690_-	DUF3802 family protein	NA	NA	NA	NA
WP_005310474.1\|2583208_2583565_-	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA
WP_042468725.1\|2583671_2584463_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_080697423.1\|2584726_2585227_-	hypothetical protein	NA	NA	NA	NA
WP_076611341.1\|2586159_2587077_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_088814112.1\|2587350_2588268_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_042468582.1\|2589683_2590172_-	MgtC/SapB family protein	G3MA03	Bacillus_virus	7.4e-15	39.8
WP_011898849.1\|2590691_2591645_+	hypothetical protein	NA	NA	NA	NA
WP_085941475.1\|2591844_2592954_-	carotenoid 1,2-hydratase	NA	NA	NA	NA
WP_042468584.1\|2592908_2595350_-	FtsX-like permease family protein	NA	NA	NA	NA
WP_042468585.1\|2595377_2596058_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	8.7e-30	35.9
WP_005310491.1\|2596255_2596723_+	DUF4357 domain-containing protein	NA	NA	NA	NA
WP_017412350.1\|2598362_2599565_-	Bcr/CflA family multidrug efflux MFS transporter	S4TR35	Salmonella_phage	1.8e-22	25.1
WP_005310495.1\|2599690_2601337_-	hypothetical protein	NA	NA	NA	NA
WP_042468587.1\|2601433_2602747_-	hypothetical protein	NA	NA	NA	NA
WP_005310500.1\|2602767_2603328_-	hypothetical protein	NA	NA	NA	NA
WP_005310502.1\|2603363_2604788_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_042468588.1\|2604890_2605730_-	hypothetical protein	NA	NA	NA	NA
WP_088814385.1\|2605729_2608621_-	hypothetical protein	NA	NA	NA	NA
WP_005310508.1\|2608724_2609174_-	hypothetical protein	NA	NA	NA	NA
WP_076611341.1\|2609737_2610655_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_157668961.1\|2610699_2610852_-	hypothetical protein	NA	NA	NA	NA
WP_042469165.1\|2611083_2611551_-	hypothetical protein	NA	NA	NA	NA
WP_042469111.1\|2613096_2614473_-	amino acid permease	NA	NA	NA	NA
WP_096071912.1\|2614501_2614756_-	hypothetical protein	NA	NA	NA	NA
WP_005310536.1\|2614838_2615126_+	hypothetical protein	NA	NA	NA	NA
WP_096071913.1\|2615927_2616845_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_096072034.1\|2617459_2619832_+	phosphoenolpyruvate synthase	A0A1V0SGR7	Hokovirus	1.1e-175	37.9
WP_017412773.1\|2620186_2621164_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_088814263.1\|2621266_2623648_-	glycoside hydrolase family 3 protein	NA	NA	NA	NA
WP_005310548.1\|2624103_2624565_-	hypothetical protein	NA	NA	NA	NA
WP_011898844.1\|2624583_2626461_-	S8 family serine peptidase	A0A1V0S9L2	Catovirus	5.2e-16	20.8
WP_005310553.1\|2626893_2627433_-	hydrolase	NA	NA	NA	NA
WP_096071914.1\|2627452_2627821_-	hypothetical protein	NA	NA	NA	NA
WP_088814343.1\|2628165_2629302_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_088814108.1\|2629751_2630669_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_042468699.1\|2631682_2632513_+	membrane protein	NA	NA	NA	NA
WP_042468696.1\|2632597_2633320_-	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_005310564.1\|2634990_2636007_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_011898842.1\|2636285_2638424_+	pilus assembly protein TapV	NA	NA	NA	NA
WP_042468693.1\|2638590_2639400_+\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA

DBSCAN-SWA_15

2649427 : 2730544

uncultured_Caudovirales_phage(16.67%)

protease,transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_088814108.1\|2649427_2650345_+\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_011898835.1\|2650954_2651614_+	TIGR01621 family pseudouridine synthase	NA	NA	NA	NA
WP_005310586.1\|2651631_2652264_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA
WP_088814260.1\|2652522_2653635_+	4-hydroxyphenylpyruvate dioxygenase	NA	NA	NA	NA
WP_096071915.1\|2654792_2655791_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_096071916.1\|2655831_2656503_+	maleylacetoacetate isomerase	NA	NA	NA	NA
WP_005310593.1\|2656586_2657210_-	glutathione S-transferase	NA	NA	NA	NA
WP_005310595.1\|2657271_2657772_-	thioredoxin family protein	NA	NA	NA	NA
WP_076611341.1\|2658004_2658922_+\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_005310605.1\|2660034_2661531_+	C69 family dipeptidase	NA	NA	NA	NA
WP_005310607.1\|2661653_2663318_-	asparagine synthase B	H8ZJK1	Ostreococcus_tauri_virus	1.3e-90	40.8
WP_005310609.1\|2663511_2663880_-	DUF861 domain-containing protein	NA	NA	NA	NA
WP_005310611.1\|2663969_2665589_-	cation:proton antiporter	NA	NA	NA	NA
WP_017412358.1\|2665609_2666359_-	HAD-IIA family hydrolase	NA	NA	NA	NA
WP_005310617.1\|2667697_2668819_-	alkene reductase	NA	NA	NA	NA
WP_042468148.1\|2668995_2670531_-	TerC family protein	A0A0R6PEZ3	Moraxella_phage	2.0e-37	41.7
WP_088814257.1\|2671785_2674977_+	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_005310623.1\|2674976_2675465_+	hypothetical protein	NA	NA	NA	NA
WP_042468145.1\|2675569_2676031_+	hotdog fold thioesterase	NA	NA	NA	NA
WP_017412353.1\|2676212_2678090_+	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	2.6e-60	36.4
WP_011898829.1\|2678424_2678907_+	molybdopterin-binding oxidoreductase	NA	NA	NA	NA
WP_042468144.1\|2678908_2680834_+	bifunctional diguanylate cyclase/phosphodiesterase	A0A127AWB9	Bacillus_phage	1.9e-05	26.6
WP_042468143.1\|2680953_2682276_-	Na+/H+ antiporter family protein	NA	NA	NA	NA
WP_085941471.1\|2682527_2683262_-	ribonuclease T	NA	NA	NA	NA
WP_042468142.1\|2683347_2685321_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.9e-32	32.8
WP_085941625.1\|2685401_2686265_+	OmpA family protein	NA	NA	NA	NA
WP_005310643.1\|2686337_2686751_-	lactoylglutathione lyase	NA	NA	NA	NA
WP_005310645.1\|2686853_2687495_-	endonuclease III	NA	NA	NA	NA
WP_017412575.1\|2687513_2688272_-	electron transport complex subunit E	NA	NA	NA	NA
WP_005310649.1\|2688345_2688978_-	electron transport complex subunit RsxG	NA	NA	NA	NA
WP_005310650.1\|2689101_2690154_-	electron transport complex subunit RsxD	NA	NA	NA	NA
WP_017412577.1\|2692452_2693016_-	electron transport complex subunit RsxB	NA	NA	NA	NA
WP_005310657.1\|2693020_2693602_-	electron transport complex subunit RsxA	NA	NA	NA	NA
WP_017412578.1\|2693714_2694611_+	DMT family transporter	NA	NA	NA	NA
WP_005310661.1\|2694706_2694904_+	hypothetical protein	NA	NA	NA	NA
WP_076611341.1\|2696385_2697303_+\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_005310683.1\|2700557_2702294_-	C4-dicarboxylic acid transporter DauA	A0A2H4J153	uncultured_Caudovirales_phage	3.4e-30	24.7
WP_076611341.1\|2703650_2704568_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_005310689.1\|2704741_2705173_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_042468902.1\|2705176_2706943_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_042468909.1\|2706906_2707905_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_042468903.1\|2707945_2709112_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_005310697.1\|2709111_2709627_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_042468905.1\|2709629_2710964_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_085941624.1\|2711056_2711767_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_088814108.1\|2714321_2715239_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_155268744.1\|2715361_2715502_+	hypothetical protein	NA	NA	NA	NA
WP_096071917.1\|2715504_2717043_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_005310708.1\|2717042_2717648_+	type VI secretion system-associated protein TagO	NA	NA	NA	NA
WP_005310710.1\|2722571_2724008_+	membrane protein	NA	NA	NA	NA
WP_005310712.1\|2724081_2724267_-	hypothetical protein	NA	NA	NA	NA
WP_005310714.1\|2724299_2724587_+	type VI secretion system PAAR protein	G4KK81	Yersinia_phage	4.6e-09	39.4
WP_085941623.1\|2724898_2725633_+\|transposase	IS1-like element ISAs8 family transposase	A0A0U2RK18	Escherichia_phage	5.8e-80	65.2
WP_005310720.1\|2725684_2725936_+	hypothetical protein	NA	NA	NA	NA
WP_096071918.1\|2726492_2727356_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	6.7e-27	30.9
WP_005300025.1\|2727466_2727685_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.2e-17	63.2
WP_005310725.1\|2727914_2728232_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	5.3e-14	48.1
WP_005310727.1\|2728291_2730544_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.2e-168	43.1

DBSCAN-SWA_16

2741967 : 2810402

Planktothrix_phage(30.0%)

tRNA,bacteriocin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005310745.1\|2741967_2743263_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	7.5e-91	43.0
WP_005310746.1\|2743450_2743939_+\|bacteriocin	bacteriocin production protein	NA	NA	NA	NA
WP_005310748.1\|2743960_2745481_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.2e-87	42.4
WP_042467876.1\|2745704_2746463_+\|tRNA	tRNA hydroxylase	NA	NA	NA	NA
WP_005310752.1\|2746619_2747405_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.4e-17	29.6
WP_042467877.1\|2747439_2748438_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	1.5e-09	28.3
WP_005310755.1\|2748437_2749331_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_042467879.1\|2749314_2750274_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_096072035.1\|2750276_2751842_-	peptide ABC transporter substrate-binding protein SapA	NA	NA	NA	NA
WP_005310760.1\|2752054_2753089_-	phage shock protein operon transcriptional activator	NA	NA	NA	NA
WP_042467881.1\|2753284_2753965_+	phage shock protein PspA	NA	NA	NA	NA
WP_005310764.1\|2753968_2754205_+	envelope stress response membrane protein PspB	NA	NA	NA	NA
WP_085941469.1\|2754186_2754606_+	envelope stress response membrane protein PspC	NA	NA	NA	NA
WP_096071921.1\|2754737_2756144_+	YcjX family protein	NA	NA	NA	NA
WP_096071922.1\|2756212_2757256_+	TIGR01620 family protein	NA	NA	NA	NA
WP_005310772.1\|2757425_2758220_+	phenylalanine 4-monooxygenase	NA	NA	NA	NA
WP_005310774.1\|2758273_2758627_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA
WP_005310776.1\|2758761_2760309_+	transcriptional regulator TyrR	NA	NA	NA	NA
WP_005310778.1\|2760506_2761058_+	YfiR family protein	NA	NA	NA	NA
WP_005310780.1\|2761054_2762251_+	diguanylate cyclase	NA	NA	NA	NA
WP_017411676.1\|2762325_2762814_+	OmpA family protein	NA	NA	NA	NA
WP_005310785.1\|2762873_2763605_-	TerC family protein	A0A0R6PEZ3	Moraxella_phage	1.1e-46	52.5
WP_005310787.1\|2763715_2764831_+	ATP-NAD kinase family protein	NA	NA	NA	NA
WP_005310789.1\|2764955_2765234_+	YfcL family protein	NA	NA	NA	NA
WP_005310791.1\|2765331_2766996_+	AMP-binding protein	A0A1V0SBX8	Catovirus	9.5e-46	28.4
WP_005310793.1\|2767074_2767956_-	cytidine deaminase	NA	NA	NA	NA
WP_005310796.1\|2768144_2768831_-	membrane protein	NA	NA	NA	NA
WP_005310798.1\|2768827_2769184_-	CidA/LrgA family protein	NA	NA	NA	NA
WP_076611341.1\|2769480_2770398_+\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_017411675.1\|2770455_2772165_+	alpha-galactosidase	NA	NA	NA	NA
WP_005310800.1\|2772248_2772755_-	hypothetical protein	NA	NA	NA	NA
WP_005310802.1\|2772907_2774335_-	exodeoxyribonuclease I	NA	NA	NA	NA
WP_096071923.1\|2774490_2775393_-	NERD domain-containing protein	NA	NA	NA	NA
WP_005310806.1\|2775680_2776451_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_042468205.1\|2776496_2777330_-	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
WP_042468204.1\|2777338_2778490_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_005310814.1\|2778603_2779494_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_005310816.1\|2779605_2781105_-	L-arabinose isomerase	NA	NA	NA	NA
WP_005310818.1\|2781125_2781824_-	L-ribulose-5-phosphate 4-epimerase	NA	NA	NA	NA
WP_042468203.1\|2781820_2783512_-	ribulokinase	NA	NA	NA	NA
WP_096071924.1\|2783873_2784866_+	arabinose ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_017412388.1\|2786492_2787494_+	L-arabinose ABC transporter permease AraH	NA	NA	NA	NA
WP_005310828.1\|2787646_2788558_+	arabinose operon transcriptional regulator AraC	NA	NA	NA	NA
WP_011898809.1\|2788835_2789993_-	galactokinase	NA	NA	NA	NA
WP_076611341.1\|2790328_2791246_+\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_080697401.1\|2792140_2793163_-	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	1.6e-80	45.3
WP_005310836.1\|2793472_2794474_+	HTH-type transcriptional regulator GalR	C6ZCU4	Enterobacteria_phage	1.8e-23	28.5
WP_088814255.1\|2794958_2796251_+	maltoporin	NA	NA	NA	NA
WP_005310842.1\|2796319_2797465_+	arabinogalactan endo-1,4-beta-galactosidase	NA	NA	NA	NA
WP_088814254.1\|2797527_2798532_-	cellulase family glycosylhydrolase	NA	NA	NA	NA
WP_005310846.1\|2798693_2799116_-	hypothetical protein	NA	NA	NA	NA
WP_096071925.1\|2799172_2800690_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	5.5e-24	25.1
WP_157738334.1\|2800649_2801102_+	hypothetical protein	NA	NA	NA	NA
WP_005310852.1\|2801184_2801493_+	hypothetical protein	NA	NA	NA	NA
WP_017412380.1\|2801595_2802678_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	G9BWD6	Planktothrix_phage	3.0e-24	34.3
WP_076611341.1\|2803730_2804648_+\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_076611341.1\|2805267_2806185_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_005310858.1\|2806765_2807617_+	sugar ABC transporter permease	NA	NA	NA	NA
WP_042469099.1\|2807635_2808835_+	cellulase family glycosylhydrolase	NA	NA	NA	NA
WP_076611341.1\|2809484_2810402_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA

DBSCAN-SWA_17

2979256 : 3020202

Synechococcus_phage(66.67%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_088814237.1\|2979256_2980174_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_005311129.1\|2981716_2981956_+	hypothetical protein	NA	NA	NA	NA
WP_005311133.1\|2983672_2984428_-	triose-phosphate isomerase	NA	NA	NA	NA
WP_034281583.1\|2984564_2985335_-	envelope biogenesis factor ElyC	NA	NA	NA	NA
WP_076611341.1\|2985481_2986399_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_005311137.1\|2986534_2987311_+\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA
WP_005311139.1\|2987404_2988739_+	chromosome partition protein MukF	NA	NA	NA	NA
WP_005311141.1\|2988719_2989457_+	chromosome partition protein MukE	NA	NA	NA	NA
WP_005311144.1\|2989484_2993912_+	chromosome partition protein MukB	NA	NA	NA	NA
WP_085941615.1\|2994164_2994542_+	septal ring lytic transglycosylase RlpA family protein	F5B3X9	Synechococcus_phage	1.1e-15	52.5
WP_076611341.1\|2994713_2995631_+\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_005311149.1\|2995825_2996338_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_076611341.1\|2996687_2997605_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_011898763.1\|2997730_2998042_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_017413050.1\|2998468_2998972_+	peptide deformylase	E3SLL2	Synechococcus_phage	1.1e-13	35.2
WP_017413049.1\|2999025_2999865_+	hypothetical protein	NA	NA	NA	NA
WP_017413048.1\|2999943_3000147_-	hypothetical protein	NA	NA	NA	NA
WP_005311168.1\|3000423_3001329_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA
WP_042468618.1\|3001390_3002698_-	permease	NA	NA	NA	NA
WP_005311174.1\|3004022_3004130_-	hypothetical protein	NA	NA	NA	NA
WP_005301193.1\|3004577_3004718_+	TIGR02808 family protein	NA	NA	NA	NA
WP_085941462.1\|3004896_3005565_+	YaeQ family protein	NA	NA	NA	NA
WP_021139313.1\|3005577_3006462_+	AEC family transporter	NA	NA	NA	NA
WP_042468619.1\|3006503_3007733_-	MFS transporter	NA	NA	NA	NA
WP_005311187.1\|3007806_3008574_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	4.6e-11	24.5
WP_005311189.1\|3008566_3009619_-	iron ABC transporter permease	NA	NA	NA	NA
WP_042468620.1\|3009737_3010844_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_005311193.1\|3010905_3011085_-	hypothetical protein	NA	NA	NA	NA
WP_005311197.1\|3015086_3015629_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA
WP_042468622.1\|3016120_3016309_+	hypothetical protein	NA	NA	NA	NA
WP_088814222.1\|3017898_3018816_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_011899080.1\|3019170_3020202_+\|transposase	IS630 family transposase	NA	NA	NA	NA

DBSCAN-SWA_18

3346472 : 3501400

106

Tupanvirus(18.18%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011899080.1\|3346472_3347504_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_005315438.1\|3350098_3350887_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_017412302.1\|3350978_3352415_-	arginine-ornithine antiporter	NA	NA	NA	NA
WP_042468868.1\|3352803_3353565_-	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	7.5e-06	24.2
WP_042468866.1\|3353634_3354555_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA
WP_096071975.1\|3354632_3355745_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_017412304.1\|3355737_3356535_-	enoyl-CoA hydratase	NA	NA	NA	NA
WP_088814229.1\|3356683_3357883_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_042468863.1\|3357938_3359450_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_076611341.1\|3360020_3360938_+\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_005315410.1\|3361918_3363538_+	methylcrotonoyl-CoA carboxylase	A0A1B2ITV7	Pike_perch_iridovirus	1.5e-19	53.4
WP_042467890.1\|3363548_3364388_+	crotonase	NA	NA	NA	NA
WP_088814227.1\|3364491_3366477_+	biotin/lipoyl-binding protein	NA	NA	NA	NA
WP_005315404.1\|3366491_3367430_+	hydroxymethylglutaryl-CoA lyase	A0A1V0SKU2	Klosneuvirus	4.2e-43	35.7
WP_005315403.1\|3367444_3367855_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_058406839.1\|3367892_3368654_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_042467892.1\|3368702_3371594_+	DUF748 domain-containing protein	NA	NA	NA	NA
WP_005315399.1\|3372272_3372869_+	hypothetical protein	NA	NA	NA	NA
WP_005315396.1\|3373783_3374221_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_088814225.1\|3376101_3376908_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA
WP_088814224.1\|3377090_3378878_+	cyclic nucleotide-binding/CBS domain-containing protein	NA	NA	NA	NA
WP_005315390.1\|3378880_3379507_+	3'-5' exonuclease	NA	NA	NA	NA
WP_005315383.1\|3379615_3379927_+	DUF485 domain-containing protein	NA	NA	NA	NA
WP_042467894.1\|3379923_3381579_+	cation acetate symporter	NA	NA	NA	NA
WP_096071976.1\|3381815_3383408_+	ABC-F family ATPase	A0A2K9L0W2	Tupanvirus	1.5e-56	27.4
WP_088814373.1\|3383685_3385596_-	peptidylprolyl isomerase	NA	NA	NA	NA
WP_005315375.1\|3385750_3386023_-	DNA-binding protein HU-beta	A7KV42	Bacillus_phage	5.0e-21	61.8
WP_021140372.1\|3386263_3388618_-	endopeptidase La	A0A0R6PGP8	Moraxella_phage	3.6e-224	53.0
WP_017411865.1\|3388759_3390034_-\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	9.6e-131	57.5
WP_085941601.1\|3390162_3390765_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	5.4e-60	61.5
WP_005315366.1\|3390872_3392183_-	trigger factor	NA	NA	NA	NA
WP_011898663.1\|3392611_3393046_+	YccF domain-containing protein	NA	NA	NA	NA
WP_005315363.1\|3393142_3393733_+	5'-deoxynucleotidase	NA	NA	NA	NA
WP_005315361.1\|3393820_3395062_-	lipoprotein-releasing ABC transporter permease subunit LolE	NA	NA	NA	NA
WP_087755599.1\|3395061_3395823_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	G9BWD6	Planktothrix_phage	2.0e-35	42.1
WP_088814223.1\|3395815_3397051_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA
WP_005315356.1\|3397127_3397703_+	PilZ domain-containing protein	NA	NA	NA	NA
WP_005315354.1\|3397712_3401177_+	transcription-repair coupling factor	NA	NA	NA	NA
WP_005315352.1\|3401266_3402301_-	class 1 fructose-bisphosphatase	A0A1V0SKX4	Klosneuvirus	4.2e-76	46.5
WP_042467895.1\|3402684_3404301_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_096071977.1\|3404348_3405269_-	DMT family transporter	NA	NA	NA	NA
WP_005315346.1\|3405469_3405676_-	DUF1107 domain-containing protein	NA	NA	NA	NA
WP_017411860.1\|3405809_3406277_-	phosphohistidine phosphatase SixA	NA	NA	NA	NA
WP_005315340.1\|3410388_3411762_-	protein kinase	NA	NA	NA	NA
WP_157669188.1\|3412066_3413647_-	hypothetical protein	NA	NA	NA	NA
WP_085044777.1\|3413705_3414644_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_088814222.1\|3414744_3415662_+\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_088814123.1\|3417286_3418204_+\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_076611341.1\|3419130_3420048_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_088814221.1\|3420092_3420332_-	hypothetical protein	NA	NA	NA	NA
WP_005315336.1\|3420725_3422306_-	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
WP_017412971.1\|3422389_3423853_-	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	5.3e-93	39.6
WP_088814108.1\|3424397_3425315_+\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_005315328.1\|3425808_3426558_+	energy transducer TonB	NA	NA	NA	NA
WP_017412973.1\|3426560_3427313_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA
WP_042469137.1\|3427312_3427735_+	biopolymer transporter ExbD	NA	NA	NA	NA
WP_088814343.1\|3428032_3429169_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_076611341.1\|3429615_3430533_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_005315309.1\|3431232_3432603_+	exodeoxyribonuclease VII large subunit	A0A2H4UVM9	Bodo_saltans_virus	5.3e-34	36.7
WP_005315308.1\|3432667_3434035_-	heme anaerobic degradation radical SAM methyltransferase ChuW/HutW	NA	NA	NA	NA
WP_088814220.1\|3434282_3435893_+	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	1.6e-26	40.8
WP_005315306.1\|3435986_3437042_-	3-deoxy-7-phosphoheptulonate synthase AroG	A0A0B6VT43	Edwardsiella_phage	5.2e-82	48.9
WP_005315305.1\|3437270_3438554_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_042468068.1\|3438724_3439813_-	3-phosphoserine/phosphohydroxythreonine transaminase	M1Q1P2	Streptococcus_phage	5.0e-88	46.9
WP_042468069.1\|3440037_3440967_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA
WP_085941450.1\|3441061_3441823_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA
WP_005315298.1\|3441940_3443590_+	electron transfer flavoprotein-ubiquinone oxidoreductase	NA	NA	NA	NA
WP_100766231.1\|3443602_3443695_+	hypothetical protein	NA	NA	NA	NA
WP_005315297.1\|3444045_3444993_+	magnesium/cobalt transporter CorA	NA	NA	NA	NA
WP_017412312.1\|3445144_3445606_+	DUF2919 domain-containing protein	NA	NA	NA	NA
WP_042468070.1\|3445621_3446374_-	hypothetical protein	NA	NA	NA	NA
WP_042468071.1\|3446630_3447869_+	siderophore amonabactin export MFS transporter	NA	NA	NA	NA
WP_042468072.1\|3447926_3449900_+	siderophore amonabactin TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	2.4e-16	34.9
WP_005315288.1\|3449970_3450987_+	amonabactin ABC transporter permease subunit 2	NA	NA	NA	NA
WP_011898657.1\|3451001_3452069_+	amonabactin ABC transporter permease subunit 1	NA	NA	NA	NA
WP_017412316.1\|3452068_3452884_+	amonabactin ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.3e-13	25.3
WP_005315278.1\|3452944_3453670_-	amonabactin biosynthesis phosphopantetheinyl transferase AmoD	NA	NA	NA	NA
WP_005315275.1\|3453828_3454773_+	amonabactin ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_005315273.1\|3454855_3456466_-	amonabactin biosynthesis glycine adenylation protein AmoH	A0A2K9L3I8	Tupanvirus	1.3e-39	27.9
WP_042468073.1\|3456462_3462699_-	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	2.0e-72	24.4
WP_005315268.1\|3462707_3463457_-	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase	NA	NA	NA	NA
WP_042468074.1\|3463486_3466576_-	non-ribosomal peptide synthetase	A0A2K9L3I8	Tupanvirus	9.1e-42	25.2
WP_005315266.1\|3466572_3467481_-	isochorismatase family protein	NA	NA	NA	NA
WP_042468075.1\|3467505_3469176_-	(2,3-dihydroxybenzoyl)adenylate synthase	NA	NA	NA	NA
WP_034282536.1\|3469172_3470366_-	isochorismate synthase	NA	NA	NA	NA
WP_005315260.1\|3470690_3471242_+	lipoprotein	NA	NA	NA	NA
WP_005315258.1\|3471388_3473389_+	hypothetical protein	NA	NA	NA	NA
WP_096071978.1\|3473559_3474477_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_076611341.1\|3477043_3477961_+\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_005315253.1\|3478709_3479204_-	hypothetical protein	NA	NA	NA	NA
WP_005315249.1\|3479384_3479747_-	DUF2750 domain-containing protein	NA	NA	NA	NA
WP_100224073.1\|3479860_3481654_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	2.5e-23	38.0
WP_042468808.1\|3481650_3482955_-	inosine/guanosine kinase	NA	NA	NA	NA
WP_021139169.1\|3483141_3483534_-	hypothetical protein	NA	NA	NA	NA
WP_080697425.1\|3483605_3484634_-	ferrochelatase	NA	NA	NA	NA
WP_017412939.1\|3484685_3485330_-	adenylate kinase	NA	NA	NA	NA
WP_005315220.1\|3485376_3485571_-	hypothetical protein	NA	NA	NA	NA
WP_005315218.1\|3485587_3487501_-	molecular chaperone HtpG	A0A1B1ISV4	uncultured_Mediterranean_phage	4.5e-116	36.5
WP_005315214.1\|3487718_3488321_-	recombination protein RecR	NA	NA	NA	NA
WP_005315205.1\|3488516_3489341_-	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA
WP_042468803.1\|3489353_3491468_-	GAF domain-containing protein	NA	NA	NA	NA
WP_076611341.1\|3491960_3492878_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_080697431.1\|3493050_3495195_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA
WP_005315180.1\|3496525_3496837_+	hypothetical protein	NA	NA	NA	NA
WP_139403270.1\|3496970_3499808_+	hypothetical protein	NA	NA	NA	NA
WP_076611341.1\|3500482_3501400_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA

DBSCAN-SWA_19

3511954 : 3565117

Tupanvirus(10.0%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005315148.1\|3511954_3513424_+\|tRNA	L-seryl-tRNA(Sec) selenium transferase	NA	NA	NA	NA
WP_096071979.1\|3513428_3515348_+	selenocysteine-specific translation elongation factor	A0A2K9KZ60	Tupanvirus	1.7e-14	27.2
WP_096071980.1\|3515344_3517771_+	carbamoyltransferase HypF	NA	NA	NA	NA
WP_005315143.1\|3517776_3518028_+	HypC/HybG/HupF family hydrogenase formation chaperone	NA	NA	NA	NA
WP_011898647.1\|3519226_3520231_+	hydrogenase expression/formation protein HypE	NA	NA	NA	NA
WP_005315136.1\|3520240_3520582_+	hydrogenase maturation nickel metallochaperone HypA	NA	NA	NA	NA
WP_042468242.1\|3520583_3521639_+	hydrogenase nickel incorporation protein HypB	NA	NA	NA	NA
WP_005315125.1\|3521855_3522497_-	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
WP_042468243.1\|3522496_3523285_-	ATP-binding cassette domain-containing protein	A0A285PWH2	Cedratvirus	1.5e-09	32.6
WP_005315119.1\|3523278_3524094_-	ABC transporter permease	NA	NA	NA	NA
WP_011898645.1\|3524083_3525094_-	ABC transporter permease	NA	NA	NA	NA
WP_088814218.1\|3525078_3526686_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_005315112.1\|3526801_3527329_-	hydrogenase-2 assembly chaperone	NA	NA	NA	NA
WP_042468245.1\|3527310_3527811_-	HyaD/HybD family hydrogenase maturation endopeptidase	NA	NA	NA	NA
WP_042468246.1\|3527810_3529514_-	hydrogenase 2 large subunit	NA	NA	NA	NA
WP_096071981.1\|3529510_3530698_-	Ni/Fe-hydrogenase cytochrome b subunit	NA	NA	NA	NA
WP_042468247.1\|3530690_3531731_-	hydrogenase 2 operon protein HybA	A0A077SL61	Escherichia_phage	7.3e-20	29.4
WP_157738370.1\|3532840_3533911_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_157668958.1\|3533806_3534028_-	hypothetical protein	NA	NA	NA	NA
WP_076611341.1\|3535111_3536029_+\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_088814217.1\|3536053_3537001_+\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_005315097.1\|3537306_3538410_+	alanine racemase	A0A0P0YM39	Yellowstone_lake_mimivirus	7.5e-31	31.1
WP_088814216.1\|3538548_3538761_+	hypothetical protein	NA	NA	NA	NA
WP_011898640.1\|3539176_3539638_-	YbjN domain-containing protein	NA	NA	NA	NA
WP_005315095.1\|3539790_3541128_+	flavohemoglobin expression-modulating QEGLA motif protein	NA	NA	NA	NA
WP_005315094.1\|3541187_3541769_-	thymidine kinase	A0A0F6TIQ8	Escherichia_coli_O157_typing_phage	1.6e-48	52.7
WP_005315093.1\|3541874_3543455_-	Na+/H+ antiporter NhaC family protein	NA	NA	NA	NA
WP_088814214.1\|3543977_3545009_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_076611341.1\|3545186_3546104_+\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_005315078.1\|3546264_3546672_+	H-NS histone family protein	NA	NA	NA	NA
WP_042468675.1\|3546738_3547302_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_005315061.1\|3547298_3547529_-	DUF3820 family protein	NA	NA	NA	NA
WP_085941448.1\|3547530_3548244_-	7-carboxy-7-deazaguanine synthase QueE	A0A2I7S8X1	Vibrio_phage	1.4e-17	39.4
WP_034282960.1\|3548263_3548971_-	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	2.9e-84	67.1
WP_085941447.1\|3548994_3549684_-	DTW domain-containing protein	NA	NA	NA	NA
WP_005315050.1\|3549634_3550192_+	rhombosortase	NA	NA	NA	NA
WP_005315048.1\|3550265_3550967_-	orotidine-5'-phosphate decarboxylase	NA	NA	NA	NA
WP_005315046.1\|3551077_3552244_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA
WP_005315045.1\|3552253_3552538_-	DUF1049 domain-containing protein	NA	NA	NA	NA
WP_042468678.1\|3552694_3552979_-	integration host factor subunit beta	A0A0H3UZA0	Geobacillus_virus	4.4e-12	38.9
WP_005315043.1\|3553071_3554742_-	30S ribosomal protein S1	NA	NA	NA	NA
WP_005315040.1\|3554836_3555529_-	(d)CMP kinase	NA	NA	NA	NA
WP_096071982.1\|3555777_3556371_+	GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	3.0e-42	46.0
WP_005315034.1\|3556516_3557491_-	HTH-type transcriptional regulator CysB	NA	NA	NA	NA
WP_042468679.1\|3557564_3558440_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_005315028.1\|3558533_3559742_+	MFS transporter	NA	NA	NA	NA
WP_085941598.1\|3559786_3560332_-	hypothetical protein	NA	NA	NA	NA
WP_005315024.1\|3560334_3561099_-	hypothetical protein	NA	NA	NA	NA
WP_005315023.1\|3561288_3562014_-	oxygen-insensitive NADPH nitroreductase	NA	NA	NA	NA
WP_042468681.1\|3562104_3564042_-	EAL domain-containing protein	G3MA91	Bacillus_virus	6.3e-17	32.1
WP_088814214.1\|3564085_3565117_-\|transposase	IS630 family transposase	NA	NA	NA	NA

DBSCAN-SWA_20

3596881 : 3673396

uncultured_Caudovirales_phage(18.18%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_076611341.1\|3596881_3597799_+\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_088814343.1\|3599567_3600704_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_076611341.1\|3601037_3601955_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_011898624.1\|3602771_3604391_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	2.5e-14	48.1
WP_005314878.1\|3604766_3605672_-	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	2.0e-34	35.2
WP_042468194.1\|3605785_3607588_-	protein translocase subunit SecD	NA	NA	NA	NA
WP_085941445.1\|3607746_3608259_-	hypothetical protein	NA	NA	NA	NA
WP_005314875.1\|3608330_3609188_-	hypothetical protein	NA	NA	NA	NA
WP_042468193.1\|3609191_3610025_-	phosphotransferase	NA	NA	NA	NA
WP_005314873.1\|3610014_3610611_-	penicillin-binding protein activator LpoB	NA	NA	NA	NA
WP_005314863.1\|3610610_3611009_-	DUF1425 domain-containing protein	NA	NA	NA	NA
WP_088814369.1\|3611083_3612436_-	hypothetical protein	NA	NA	NA	NA
WP_005314859.1\|3612513_3612864_-	purine nucleoside phosphoramidase	NA	NA	NA	NA
WP_088814211.1\|3612961_3615127_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	7.3e-30	40.1
WP_085941594.1\|3615198_3616008_-	hypothetical protein	NA	NA	NA	NA
WP_005314854.1\|3616153_3617497_+	dihydroorotase	NA	NA	NA	NA
WP_042468190.1\|3617916_3618483_+	hypothetical protein	NA	NA	NA	NA
WP_011898617.1\|3618689_3619949_+	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA
WP_005314849.1\|3620030_3620471_-	isoprenylcysteine carboxylmethyltransferase family protein	NA	NA	NA	NA
WP_005314845.1\|3620662_3621889_+	alanine racemase	NA	NA	NA	NA
WP_034282953.1\|3621967_3622912_-	TerC family protein	A0A291LBC5	Escherichia_phage	9.2e-38	36.3
WP_042468189.1\|3623214_3624210_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.2e-19	31.9
WP_005314835.1\|3624210_3624324_-	hypothetical protein	NA	NA	NA	NA
WP_005314832.1\|3624320_3625307_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.4e-15	31.7
WP_005314829.1\|3625339_3626251_-	oligopeptide ABC transporter permease OppC	NA	NA	NA	NA
WP_021139963.1\|3626265_3627186_-	oligopeptide ABC transporter permease OppB	NA	NA	NA	NA
WP_042468196.1\|3627284_3628904_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_005314822.1\|3629186_3629822_-	YchE family NAAT transporter	NA	NA	NA	NA
WP_085941443.1\|3629994_3630723_+	2OG-Fe dioxygenase family protein	NA	NA	NA	NA
WP_005314815.1\|3631018_3633694_+	bifunctional acetaldehyde-CoA/alcohol dehydrogenase	NA	NA	NA	NA
WP_076611341.1\|3634613_3635531_+\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_005314809.1\|3636464_3638141_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	8.4e-159	55.9
WP_005314806.1\|3638216_3638921_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_042468645.1\|3639063_3640485_+	carbon starvation protein A	NA	NA	NA	NA
WP_005314799.1\|3640773_3641112_+	DUF3302 domain-containing protein	NA	NA	NA	NA
WP_005314797.1\|3641115_3642153_+	HlyD family secretion protein	NA	NA	NA	NA
WP_042468644.1\|3642254_3644015_+	DEAD/DEAH box helicase	M4Q3N1	Vibrio_phage	1.9e-92	40.9
WP_042468643.1\|3644120_3645566_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA
WP_005314790.1\|3645763_3646027_+	GrxA family glutaredoxin	A0A2I7SAE2	Vibrio_phage	6.1e-24	62.8
WP_005314787.1\|3646088_3646301_-	DUF1653 domain-containing protein	NA	NA	NA	NA
WP_005314784.1\|3646693_3647908_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_042468642.1\|3647972_3649448_-	YfcC family protein	NA	NA	NA	NA
WP_042468640.1\|3649611_3650805_-	trans-2-enoyl-CoA reductase family protein	NA	NA	NA	NA
WP_005314771.1\|3651158_3651338_+	hypothetical protein	NA	NA	NA	NA
WP_042468638.1\|3653747_3654755_-	hypothetical protein	NA	NA	NA	NA
WP_088814210.1\|3654864_3656026_+\|transposase	IS3-like element ISAs33 family transposase	Q716C2	Shigella_phage	2.8e-84	50.8
WP_096071984.1\|3656137_3656839_-	SIMPL domain-containing protein	NA	NA	NA	NA
WP_042468729.1\|3656880_3657438_-	hypothetical protein	NA	NA	NA	NA
WP_042468733.1\|3657524_3660998_-	type I secretion C-terminal target domain-containing protein	NA	NA	NA	NA
WP_005314739.1\|3662716_3664642_-	EAL domain-containing protein	NA	NA	NA	NA
WP_005314730.1\|3664645_3665407_-	hypothetical protein	NA	NA	NA	NA
WP_005314727.1\|3665528_3666854_-	TolC family outer membrane protein	NA	NA	NA	NA
WP_017412894.1\|3666889_3668308_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
WP_005314720.1\|3668300_3670445_-	type I secretion system permease/ATPase	F2Y2R6	Organic_Lake_phycodnavirus	6.3e-26	33.9
WP_005314700.1\|3670862_3671798_-	TIGR01212 family radical SAM protein	NA	NA	NA	NA
WP_096071985.1\|3672478_3673396_+\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA

DBSCAN-SWA_21

3932039 : 3965141

Tupanvirus(50.0%)

protease,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005309688.1\|3932039_3933701_-\|tRNA	glutamine--tRNA ligase	A0A222YZ70	Escherichia_phage	7.8e-266	79.5
WP_042467528.1\|3934048_3936712_-	family 20 glycosylhydrolase	NA	NA	NA	NA
WP_076611341.1\|3936885_3937803_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_088814201.1\|3939649_3940450_+	glucosamine-6-phosphate deaminase	NA	NA	NA	NA
WP_005309677.1\|3940459_3941605_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA
WP_085941483.1\|3941546_3942824_+	ROK family protein	NA	NA	NA	NA
WP_088814200.1\|3943571_3944721_+\|transposase	IS3-like element ISAs32 family transposase	U5P429	Shigella_phage	9.0e-96	63.1
WP_088814108.1\|3945406_3946324_+\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_157668955.1\|3947283_3947409_-	hypothetical protein	NA	NA	NA	NA
WP_157738346.1\|3947356_3948478_-	hypothetical protein	A0A2K9L3I8	Tupanvirus	1.8e-11	22.9
WP_096071997.1\|3948521_3950033_-	AMP-binding protein	A0A2K9KZV5	Tupanvirus	1.3e-38	28.6
WP_157668954.1\|3950062_3950197_-	hypothetical protein	NA	NA	NA	NA
WP_080697436.1\|3950172_3950991_-	hypothetical protein	NA	NA	NA	NA
WP_088814197.1\|3950987_3951566_-	acyl carrier protein	NA	NA	NA	NA
WP_076611341.1\|3951590_3952508_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_042468948.1\|3952654_3955087_+	family 20 glycosylhydrolase	NA	NA	NA	NA
WP_042468945.1\|3955317_3956943_-	phosphoethanolamine--lipid A transferase	NA	NA	NA	NA
WP_005313105.1\|3957347_3958088_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_042468944.1\|3958180_3959947_-\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
WP_088814108.1\|3960704_3961622_+\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_005313097.1\|3962575_3963319_+	carboxy-S-adenosyl-L-methionine synthase CmoA	NA	NA	NA	NA
WP_005313094.1\|3963322_3964300_+\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
WP_085941630.1\|3964424_3965141_+\|protease	ATP-dependent zinc protease	NA	NA	NA	NA

DBSCAN-SWA_22

3968561 : 4033557

Bacillus_thuringiensis_phage(20.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011899080.1\|3968561_3969593_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_088814193.1\|3969608_3970340_-	protein phosphatase CheZ	NA	NA	NA	NA
WP_005319295.1\|3970352_3970736_-	chemotaxis protein CheY	Q56AR1	Bacillus_thuringiensis_phage	4.4e-07	32.8
WP_005319297.1\|3970847_3971567_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA
WP_088814192.1\|3971595_3972429_-	MinD/ParA family protein	NA	NA	NA	NA
WP_096071998.1\|3972436_3973825_-	flagellar biosynthesis protein FlhF	NA	NA	NA	NA
WP_088814191.1\|3973872_3975975_-	flagellar biosynthesis protein FlhA	NA	NA	NA	NA
WP_042468835.1\|3977015_3977813_-	flagellar type III secretion system protein FliR	NA	NA	NA	NA
WP_005319310.1\|3977892_3978162_-	flagellar biosynthesis protein FliQ	NA	NA	NA	NA
WP_042468832.1\|3978189_3978969_-	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA
WP_005319315.1\|3978955_3979339_-	flagellar biosynthetic protein FliO	NA	NA	NA	NA
WP_017412373.1\|3979400_3979793_-	flagellar motor switch protein FliN	NA	NA	NA	NA
WP_005319319.1\|3979842_3980913_-	flagellar motor switch protein FliM	NA	NA	NA	NA
WP_017412372.1\|3980922_3981441_-	flagellar basal body-associated protein FliL	NA	NA	NA	NA
WP_088814222.1\|3983349_3984267_+\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_005319344.1\|3984365_3985151_-	hypothetical protein	NA	NA	NA	NA
WP_005319346.1\|3985349_3985718_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_005319348.1\|3985969_3986278_+	DUF134 domain-containing protein	NA	NA	NA	NA
WP_042468560.1\|3986274_3986799_+	hypothetical protein	NA	NA	NA	NA
WP_005319352.1\|3986783_3986966_+	hypothetical protein	NA	NA	NA	NA
WP_096071999.1\|3987005_3988202_-	HD domain-containing protein	NA	NA	NA	NA
WP_005319357.1\|3988434_3989763_+	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA
WP_005319359.1\|3989925_3990393_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_005319365.1\|3993272_3994241_-	glucokinase	NA	NA	NA	NA
WP_087755253.1\|3994581_3995445_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_017412636.1\|3995608_3997048_+	pyruvate kinase	NA	NA	NA	NA
WP_005319373.1\|3997108_3998155_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_042468563.1\|3998170_4001236_-	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	3.3e-68	25.2
WP_096072000.1\|4001411_4003736_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_042468566.1\|4003784_4004438_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_157738349.1\|4004583_4004796_+	hypothetical protein	NA	NA	NA	NA
WP_076611341.1\|4004844_4005762_+\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_076611341.1\|4006502_4007420_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_076611341.1\|4009080_4009998_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_005316739.1\|4010489_4011407_+	L,D-transpeptidase family protein	NA	NA	NA	NA
WP_096072001.1\|4011437_4012424_+	DUF481 domain-containing protein	NA	NA	NA	NA
WP_005316745.1\|4012560_4013268_-	MaoC family dehydratase	NA	NA	NA	NA
WP_034282620.1\|4013510_4014467_-	23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF	NA	NA	NA	NA
WP_087755208.1\|4014617_4015118_-	peptidase P60	A0A217EQL1	Bacillus_phage	1.4e-16	43.8
WP_005316754.1\|4015380_4016103_+	4'-phosphopantetheinyl transferase superfamily protein	NA	NA	NA	NA
WP_005316757.1\|4016099_4016948_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_005334342.1\|4017091_4017334_-	hypothetical protein	NA	NA	NA	NA
WP_005316761.1\|4017558_4018212_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	2.3e-40	43.1
WP_042468628.1\|4018685_4019522_+	formyltetrahydrofolate deformylase	M4QRX9	Synechococcus_phage	3.1e-13	37.1
WP_005316767.1\|4019591_4020854_-	DUF945 family protein	NA	NA	NA	NA
WP_088814188.1\|4022444_4023053_+	DUF1439 domain-containing protein	NA	NA	NA	NA
WP_042468632.1\|4023057_4023498_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_042468634.1\|4023971_4025135_+	M23 family metallopeptidase	NA	NA	NA	NA
WP_085941431.1\|4025363_4026725_+	alpha-amylase	NA	NA	NA	NA
WP_005316782.1\|4027710_4028397_-	aquaporin Z	NA	NA	NA	NA
WP_017412842.1\|4028744_4029266_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA
WP_076611341.1\|4029907_4030825_+\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_088814343.1\|4031185_4032322_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_011899080.1\|4032525_4033557_+\|transposase	IS630 family transposase	NA	NA	NA	NA

DBSCAN-SWA_23

4444648 : 4519028

Tupanvirus(14.29%)

protease,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005316946.1\|4444648_4445182_+\|protease	SprT family zinc-dependent metalloprotease	A0A060AI19	Cronobacter_phage	6.8e-06	31.0
WP_005316947.1\|4445255_4445945_+	deoxyribonuclease	NA	NA	NA	NA
WP_005316949.1\|4446075_4446807_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_005316951.1\|4446858_4447812_+	glutathione synthase	NA	NA	NA	NA
WP_076611341.1\|4449588_4450506_+\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_011899080.1\|4450700_4451732_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_011898468.1\|4451803_4452391_+	YqgE/AlgH family protein	NA	NA	NA	NA
WP_005316956.1\|4452437_4452860_+	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_005316958.1\|4453002_4453965_-	HTH-type transcriptional regulator YidZ	NA	NA	NA	NA
WP_042468776.1\|4453987_4455139_-	MFS transporter	NA	NA	NA	NA
WP_080697424.1\|4455452_4456601_-	FOX/MOX family class C beta-lactamase	NA	NA	NA	NA
WP_005316965.1\|4456825_4457746_+	MoxR family ATPase	NA	NA	NA	NA
WP_017412666.1\|4457745_4458750_+	DUF58 domain-containing protein	NA	NA	NA	NA
WP_042468773.1\|4458736_4460710_+	DUF3488 domain-containing transglutaminase family protein	NA	NA	NA	NA
WP_005316972.1\|4460812_4462255_-	alanine:cation symporter family protein	NA	NA	NA	NA
WP_005316974.1\|4462997_4463948_+	transaldolase	A0A127KNC6	Cyanophage	4.6e-13	30.7
WP_005316978.1\|4464339_4464888_-	hemerythrin	NA	NA	NA	NA
WP_005316980.1\|4465134_4465803_-	uracil-DNA glycosylase	A0A109ZQN1	Equid_alphaherpesvirus	1.8e-51	48.4
WP_005316983.1\|4465834_4466092_-	hypothetical protein	NA	NA	NA	NA
WP_011899080.1\|4466269_4467301_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_005316999.1\|4467595_4467976_+	autonomous glycyl radical cofactor GrcA	A0A219YAN3	Aeromonas_phage	4.4e-31	60.3
WP_076611341.1\|4468581_4469499_+\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_042468530.1\|4470740_4471595_-	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	2.3e-48	40.6
WP_042468528.1\|4471846_4472647_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_005317005.1\|4472658_4473042_-	SirB2 family protein	NA	NA	NA	NA
WP_005317007.1\|4473086_4473956_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_005317010.1\|4474005_4475094_-	peptide chain release factor 1	W8EDB3	Pseudomonas_phage	2.2e-06	38.5
WP_042468526.1\|4475147_4476404_-\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_005317016.1\|4476524_4477109_+	outer membrane lipoprotein LolB	NA	NA	NA	NA
WP_017412585.1\|4477135_4478005_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
WP_005317019.1\|4478369_4479317_+	ribose-phosphate pyrophosphokinase	A0A2K9L2G2	Tupanvirus	9.2e-46	38.1
WP_042468524.1\|4479418_4481407_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA
WP_042468523.1\|4481615_4482257_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_017412588.1\|4482263_4483355_+	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_005317037.1\|4484784_4486617_-	SLC13 family permease	NA	NA	NA	NA
WP_005317039.1\|4486912_4487635_+	nicotinamide riboside transporter PnuC	A0A2I7SAC7	Vibrio_phage	1.3e-20	29.2
WP_005317041.1\|4487631_4488357_+	nucleoside phosphorylase	NA	NA	NA	NA
WP_005317044.1\|4488504_4489176_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_017412611.1\|4489210_4489537_+	ASCH domain-containing protein	NA	NA	NA	NA
WP_005317048.1\|4489624_4490545_+	alpha/beta hydrolase	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	8.1e-23	31.9
WP_157668966.1\|4490619_4490757_+	hypothetical protein	NA	NA	NA	NA
WP_076611341.1\|4490801_4491719_+\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_042469063.1\|4492442_4495202_+	hypothetical protein	NA	NA	NA	NA
WP_017412609.1\|4495198_4496869_-	molecular chaperone HscC	F2Y0P3	Organic_Lake_phycodnavirus	4.5e-72	32.7
WP_005317065.1\|4497105_4497447_+	DUF1622 domain-containing protein	NA	NA	NA	NA
WP_088814162.1\|4497512_4498430_-\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_005317067.1\|4498711_4500319_+	alpha-glucosidase	NA	NA	NA	NA
WP_042468064.1\|4500802_4502593_+	hypothetical protein	NA	NA	NA	NA
WP_005317078.1\|4502973_4504533_+	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L0W2	Tupanvirus	2.8e-47	26.9
WP_005317081.1\|4504543_4505698_+	MFS transporter	NA	NA	NA	NA
WP_005317090.1\|4511235_4511832_+	beta-phosphoglucomutase family hydrolase	A0A1D8KPI1	Synechococcus_phage	1.9e-12	28.7
WP_005317093.1\|4512009_4512807_-	DUF1338 domain-containing protein	NA	NA	NA	NA
WP_005317097.1\|4512937_4514407_-	succinylglutamate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_005317100.1\|4514491_4515511_-	arginine N-succinyltransferase	NA	NA	NA	NA
WP_005317101.1\|4515586_4516804_-	aspartate aminotransferase family protein	A0A1V0SKB7	Klosneuvirus	2.6e-24	27.1
WP_005317102.1\|4517081_4517663_-	aminodeoxychorismate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	1.7e-71	63.7
WP_005317103.1\|4517684_4517900_-	hypothetical protein	NA	NA	NA	NA
WP_005317104.1\|4518023_4519028_-\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA

DBSCAN-SWA_24

4743802 : 4782922

Aeromonas_virus(25.0%)

capsid,transposase,terminase,integrase,head,tail,portal

attL 4740568:4740582|attR 4766660:4766674

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4740568:4740582	attL	NA	NA	NA	NA
WP_076611341.1\|4743802_4744720_+\|transposase	IS5-like element ISAs4 family transposase	NA	NA	NA	NA
WP_005317818.1\|4745562_4745778_+	hypothetical protein	NA	NA	NA	NA
WP_005317820.1\|4745815_4746571_-	DNA/RNA non-specific endonuclease	X2KR27	Campylobacter_phage	5.1e-23	29.1
WP_088814298.1\|4746820_4747756_-	cytochrome-c peroxidase	NA	NA	NA	NA
WP_088814343.1\|4747782_4748919_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_042468556.1\|4749531_4750257_+	carbonic anhydrase family protein	NA	NA	NA	NA
WP_005317829.1\|4750331_4751240_-	pseudouridine-5'-phosphate glycosidase	NA	NA	NA	NA
WP_042468555.1\|4751233_4752325_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_005317834.1\|4752522_4753032_+	RNA methyltransferase	NA	NA	NA	NA
WP_005317835.1\|4753159_4753528_-	hypothetical protein	NA	NA	NA	NA
WP_005317837.1\|4753612_4754359_-	hypothetical protein	NA	NA	NA	NA
WP_005317842.1\|4754567_4754996_+	universal stress protein	NA	NA	NA	NA
WP_005317845.1\|4755063_4755699_-	murein L,D-transpeptidase catalytic domain family protein	NA	NA	NA	NA
WP_042468553.1\|4755854_4757108_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	2.7e-93	46.5
WP_011898405.1\|4757205_4758309_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	9.0e-61	41.2
WP_005317854.1\|4758535_4758928_-	sigma factor-binding protein Crl	NA	NA	NA	NA
WP_005317857.1\|4758988_4760257_-	esterase FrsA	NA	NA	NA	NA
WP_005317860.1\|4760368_4760836_-	xanthine phosphoribosyltransferase	NA	NA	NA	NA
WP_024943575.1\|4760945_4761992_-\|integrase	tyrosine-type recombinase/integrase	A5X9F3	Aeromonas_virus	1.9e-100	54.6
WP_157738360.1\|4761988_4763200_-	hypothetical protein	NA	NA	NA	NA
WP_085044606.1\|4763229_4763559_-	S24 family peptidase	A5X9F5	Aeromonas_virus	2.1e-34	64.2
WP_085044558.1\|4764141_4764555_+	hypothetical protein	NA	NA	NA	NA
WP_096072022.1\|4764588_4765107_+	hypothetical protein	A5X9F7	Aeromonas_virus	1.5e-26	43.0
WP_024943570.1\|4765118_4765436_+	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_085044560.1\|4765432_4765654_+	hypothetical protein	NA	NA	NA	NA
WP_085044561.1\|4765668_4766112_+	hypothetical protein	NA	NA	NA	NA
WP_085044562.1\|4766175_4766475_+	hypothetical protein	NA	NA	NA	NA
WP_085044563.1\|4766471_4766690_+	hypothetical protein	NA	NA	NA	NA
4766660:4766674	attR	NA	NA	NA	NA
WP_085044564.1\|4766859_4767150_+	hypothetical protein	NA	NA	NA	NA
WP_085044565.1\|4767146_4767464_+	hypothetical protein	A5X9G2	Aeromonas_virus	1.5e-40	76.5
WP_085044566.1\|4767460_4767682_+	hypothetical protein	NA	NA	NA	NA
WP_085044567.1\|4767678_4767954_+	hypothetical protein	NA	NA	NA	NA
WP_085044607.1\|4768193_4768529_+	hypothetical protein	NA	NA	NA	NA
WP_085044568.1\|4768525_4768762_+	hypothetical protein	NA	NA	NA	NA
WP_085044569.1\|4768758_4771146_+	replication endonuclease	A5X9G4	Aeromonas_virus	1.5e-97	34.9
WP_085044570.1\|4771156_4771759_+	3'-5' exonuclease	A2I2Z6	Vibrio_virus	3.2e-52	59.9
WP_085044571.1\|4771755_4772097_+	hypothetical protein	A0A1P8DTU9	Salmonella_phage	2.2e-34	63.8
WP_085044573.1\|4772557_4772908_+	hypothetical protein	NA	NA	NA	NA
WP_085044574.1\|4772904_4773246_+	hypothetical protein	G9L6B6	Escherichia_phage	2.6e-06	32.0
WP_085044575.1\|4773255_4773549_+	hypothetical protein	NA	NA	NA	NA
WP_085044576.1\|4773640_4773832_+	DUF3283 family protein	NA	NA	NA	NA
WP_139804921.1\|4774410_4774776_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_085044578.1\|4774984_4775170_+	hypothetical protein	NA	NA	NA	NA
WP_085044579.1\|4775636_4776701_-\|portal	phage portal protein	A4PE27	Ralstonia_virus	6.8e-114	56.1
WP_085044580.1\|4776697_4778467_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	9.2e-241	69.8
WP_085044581.1\|4778615_4779449_+\|capsid	GPO family capsid scaffolding protein	E5FFI7	Burkholderia_phage	1.8e-53	47.5
WP_085044582.1\|4779461_4780496_+\|capsid	phage major capsid protein, P2 family	A4PE30	Ralstonia_virus	2.3e-114	61.4
WP_085044583.1\|4780505_4781258_+\|terminase	terminase	Q6K1I5	Salmonella_virus	3.2e-41	43.9
WP_085044584.1\|4781254_4781506_+	hypothetical protein	A0A2H4P7H0	Pseudomonas_phage	4.8e-10	42.2
WP_085044585.1\|4781616_4782093_+\|head	head completion/stabilization protein	E5E3S2	Burkholderia_phage	1.2e-33	51.9
WP_043144013.1\|4782092_4782296_+\|tail	tail protein X	A0A2H4J946	uncultured_Caudovirales_phage	3.6e-16	59.1
WP_080750970.1\|4782286_4782544_+	conjugal transfer protein TraR	NA	NA	NA	NA
WP_085044586.1\|4782559_4782922_+	hypothetical protein	E5E3R9	Burkholderia_phage	1.8e-13	38.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP017145

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1461 : 59428

Vibrio_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_076611341.1\|1461_2379_-\|transposase	IS5-like element ISAs4 family transposase	A0A1V0E8E1	Vibrio_phage	4.4e-93	55.8
WP_042469128.1\|2661_3420_+	ABC transporter permease	NA	NA	NA	NA
WP_042469126.1\|4075_4474_-	H-NS histone family protein	NA	NA	NA	NA
WP_043774562.1\|5196_6030_-	hypothetical protein	A0A219Y8Z3	Aeromonas_phage	1.0e-19	30.9
WP_005321586.1\|6815_7388_+	AAA family ATPase	NA	NA	NA	NA
WP_096072051.1\|7403_7736_+	hypothetical protein	NA	NA	NA	NA
WP_011898961.1\|7775_8990_-\|transposase	IS256-like element ISAs3 family transposase	A0A218MNI5	uncultured_virus	4.3e-48	47.9
WP_155268746.1\|9215_9353_-	hypothetical protein	NA	NA	NA	NA
WP_005320818.1\|10984_11434_-	Ati1 family type III secretion system chaperone	NA	NA	NA	NA
WP_011899437.1\|12207_13236_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_017411843.1\|13869_14535_-	HrpE/YscL family type III secretion apparatus protein	NA	NA	NA	NA
WP_042468158.1\|14513_15140_-	type III secretion system sorting platform protein AscK	NA	NA	NA	NA
WP_005320809.1\|15136_15865_-	EscJ/YscJ/HrcJ family type III secretion inner membrane ring protein	NA	NA	NA	NA
WP_005320806.1\|15883_16222_-	EscI/YscI/HrpB family type III secretion system inner rod protein	NA	NA	NA	NA
WP_005320804.1\|16221_16776_-	YopR family type III secretion effector	NA	NA	NA	NA
WP_096072052.1\|16772_17126_-	YscG family type III secretion protein	NA	NA	NA	NA
WP_088814099.1\|17125_17383_-	EscF/YscF/HrpA family type III secretion system needle major subunit	NA	NA	NA	NA
WP_042468160.1\|17375_17588_-	EscE/YscE/SsaE family type III secretion system needle protein co-chaperone	NA	NA	NA	NA
WP_042468161.1\|17550_18855_-	EscD/YscD/HrpQ family type III secretion system inner membrane ring protein	NA	NA	NA	NA
WP_005320794.1\|18851_20690_-	EscC/YscC/HrcC family type III secretion system outer membrane ring protein	NA	NA	NA	NA
WP_017411838.1\|20677_21103_-	YscB family type III secretion system chaperone	NA	NA	NA	NA
WP_017411837.1\|21118_21934_-	T3SS regulon anti-activator ExsD family protein	NA	NA	NA	NA
WP_096072053.1\|22053_22797_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_076611341.1\|22889_23807_+\|transposase	IS5-like element ISAs4 family transposase	A0A1V0E8E1	Vibrio_phage	4.4e-93	55.8
WP_042468163.1\|24285_24687_-	type III secretion system chaperone YscW	NA	NA	NA	NA
WP_005320785.1\|24683_24917_-	T3SS regulon translocated regulator ExsE family protein	NA	NA	NA	NA
WP_096072054.1\|24919_25363_-	glycosyl transferase	NA	NA	NA	NA
WP_042468164.1\|25498_26395_-	type III secretion system translocon subunit AopD	NA	NA	NA	NA
WP_042468165.1\|26407_27601_-	type III secretion system translocon subunit AopB	NA	NA	NA	NA
WP_042468166.1\|27548_28085_-	CesD/SycD/LcrH family type III secretion system chaperone	NA	NA	NA	NA
WP_096072055.1\|28094_29180_-	hypothetical protein	NA	NA	NA	NA
WP_005320774.1\|29189_29474_-	hypothetical protein	NA	NA	NA	NA
WP_005320772.1\|29513_29969_-	type III secretion system regulator LcrR	NA	NA	NA	NA
WP_096072056.1\|29965_32083_-	EscV/YscV/HrcV family type III secretion system export apparatus protein	NA	NA	NA	NA
WP_020379598.1\|32063_32414_-	type III secretion system chaperone AscY	NA	NA	NA	NA
WP_005320766.1\|32410_32776_-	type III secretion system protein AscX	NA	NA	NA	NA
WP_005320764.1\|32772_33144_-	type III secretion chaperone SycN	NA	NA	NA	NA
WP_088814098.1\|33140_33422_-	TyeA family type III secretion system gatekeeper subunit	NA	NA	NA	NA
WP_042468168.1\|33402_34281_-	YopN family type III secretion system gatekeeper subunit	NA	NA	NA	NA
WP_005320755.1\|34470_35793_+	EscN/YscN/HrcN family type III secretion system ATPase	NA	NA	NA	NA
WP_017411827.1\|35789_36251_+	type III secretion system central stalk protein AscO	NA	NA	NA	NA
WP_005320747.1\|37801_38728_+	YscQ/HrcQ family type III secretion apparatus protein	NA	NA	NA	NA
WP_042468169.1\|38724_39378_+	EscR/YscR/HrcR family type III secretion system export apparatus protein	NA	NA	NA	NA
WP_005320743.1\|39379_39646_+	EscS/YscS/HrcS family type III secretion system export apparatus protein	NA	NA	NA	NA
WP_042468170.1\|39642_40431_+	EscT/YscT/HrcT family type III secretion system export apparatus protein	NA	NA	NA	NA
WP_005320739.1\|40427_41486_+	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA
WP_076611341.1\|45489_46407_-\|transposase	IS5-like element ISAs4 family transposase	A0A1V0E8E1	Vibrio_phage	4.4e-93	55.8
WP_042469195.1\|46813_47452_+	AAA family ATPase	A0A222YXS3	Escherichia_phage	4.9e-43	44.8
WP_080697445.1\|47451_47742_+	CopG family transcriptional regulator	NA	NA	NA	NA
WP_088814097.1\|47957_48353_+	hypothetical protein	NA	NA	NA	NA
WP_076611341.1\|48397_49315_+\|transposase	IS5-like element ISAs4 family transposase	A0A1V0E8E1	Vibrio_phage	4.4e-93	55.8
WP_042468959.1\|49533_50253_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.6e-50	45.1
WP_042468955.1\|54019_54580_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	9.9e-48	83.1
WP_042468961.1\|54803_55073_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_042468953.1\|55072_55348_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_042468951.1\|56134_57049_+	TOMM precursor leader peptide-binding protein	NA	NA	NA	NA
WP_088814096.1\|57050_57236_+	hypothetical protein	NA	NA	NA	NA
WP_076611341.1\|57284_58202_+\|transposase	IS5-like element ISAs4 family transposase	A0A1V0E8E1	Vibrio_phage	4.4e-93	55.8
WP_088814095.1\|58396_59428_+\|transposase	IS630 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP017143

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP017145

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection