CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP023429	Neisseria sp. 10022 chromosome, complete genome	2 crisprs	DEDDh,cas2,csa3,cas1,c2c9_V-U4,RT,cas4,cas7,cas8c,cas5,cas3	0	15	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP023429_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023429_1

820249-821141

Unclear

Consensus_repeat	Method
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	PILER-CR
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	CRISPRCasFinder
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	CRT

13 spacers

cas2,cas1,DEDDh

The CRISPR arrays of NZ_CP023429_1

>merge|NZ_CP023429|1|820249-821141|PILER-CR,CRISPRCasFinder,CRT
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACCCTTACGCTGCAACAAGCCACACCCTGATTATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACGAAAAAAAGTTGGGCTGCGCGGTTGCGAAATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACCTTTGAAATTTATCAATAAAGGTTAAAAAAATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACTAGTTATGCTGATGTAAGAAAATATCCAATATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACGCCTCATCATCTTTGTATTTCCAGCTTTGAATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACAAAAGTGTTCGCTACGCTCCGACAGGCGATATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACGCCGCGCGCAAGCTGGCGACGTATGTGGGTATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACAGTTCGCACGAAGAACCCCGAAAAATACAAATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACTTACCGATTTGGAACGGCAATCAGGTATCTATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACAGGCTTTCTGAAGAATTGTTTAAACCGATTATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACTTCCTTGTTTGTGCTAAACTTCATTTAATTATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACTGATCTTGGAAGGATATTTTGCGCGAAGCCATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAACAACCTTCTAATTGTCTCGTTTTGTGTATCTATTGTAGCACTGCGAAATGAGAAAGAAATTAAATAA

>NZ_CP023429|1|1|820249-821075|PILER-CR
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	CCTTACGCTGCAACAAGCCACACCCTGATT
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	GAAAAAAAGTTGGGCTGCGCGGTTGCGAA
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	CTTTGAAATTTATCAATAAAGGTTAAAAAA
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	TAGTTATGCTGATGTAAGAAAATATCCAAT
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	GCCTCATCATCTTTGTATTTCCAGCTTTGA
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	AAAAGTGTTCGCTACGCTCCGACAGGCGAT
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	GCCGCGCGCAAGCTGGCGACGTATGTGGGT
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	AGTTCGCACGAAGAACCCCGAAAAATACAA
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	TTACCGATTTGGAACGGCAATCAGGTATCT
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	AGGCTTTCTGAAGAATTGTTTAAACCGATT
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	TTCCTTGTTTGTGCTAAACTTCATTTAATT
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	TGATCTTGGAAGGATATTTTGCGCGAAGCC
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC

>NZ_CP023429|1|1|820249-821141|CRISPRCasFinder
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	CCTTACGCTGCAACAAGCCACACCCTGATT
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	GAAAAAAAGTTGGGCTGCGCGGTTGCGAA
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	CTTTGAAATTTATCAATAAAGGTTAAAAAA
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	TAGTTATGCTGATGTAAGAAAATATCCAAT
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	GCCTCATCATCTTTGTATTTCCAGCTTTGA
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	AAAAGTGTTCGCTACGCTCCGACAGGCGAT
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	GCCGCGCGCAAGCTGGCGACGTATGTGGGT
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	AGTTCGCACGAAGAACCCCGAAAAATACAA
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	TTACCGATTTGGAACGGCAATCAGGTATCT
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	AGGCTTTCTGAAGAATTGTTTAAACCGATT
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	TTCCTTGTTTGTGCTAAACTTCATTTAATT
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	TGATCTTGGAAGGATATTTTGCGCGAAGCC
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	AACCTTCTAATTGTCTCGTTTTGTGTATCT
ATTGTAGCACTGCGAAATGAGAAAGAAATTAAATAA

>NZ_CP023429|1|1|820249-821141|CRT
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	CCTTACGCTGCAACAAGCCACACCCTGATT
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	GAAAAAAAGTTGGGCTGCGCGGTTGCGAA
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	CTTTGAAATTTATCAATAAAGGTTAAAAAA
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	TAGTTATGCTGATGTAAGAAAATATCCAAT
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	GCCTCATCATCTTTGTATTTCCAGCTTTGA
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	AAAAGTGTTCGCTACGCTCCGACAGGCGAT
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	GCCGCGCGCAAGCTGGCGACGTATGTGGGT
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	AGTTCGCACGAAGAACCCCGAAAAATACAA
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	TTACCGATTTGGAACGGCAATCAGGTATCT
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	AGGCTTTCTGAAGAATTGTTTAAACCGATT
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	TTCCTTGTTTGTGCTAAACTTCATTTAATT
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	TGATCTTGGAAGGATATTTTGCGCGAAGCC
ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	AACCTTCTAATTGTCTCGTTTTGTGTATCT
ATTGTAGCACTGCGAAATGAGAAAGAAATTAAATAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023429.1\|WP_096294925.1\|812073_812967_+\|methylenetetrahydrofolate-reductase	unknown	unknown	gnl\|CDD\|181852
NZ_CP023429.1\|WP_096294935.1\|844171_844861_-\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|211327
NZ_CP023429.1\|WP_096294937.1\|845836_846562_+\|DNA-polymerase-III-subunit-epsilon	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|235574
NZ_CP023429.1\|WP_096294931.1\|836424_837054_-\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	unknown	unknown	gnl\|CDD\|178955
NZ_CP023429.1\|WP_157742683.1\|811073_811304_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|315923
NZ_CP023429.1\|WP_096294933.1\|839209_841663_-\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|236669
NZ_CP023429.1\|WP_096296092.1\|825581_825887_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
NZ_CP023429.1\|WP_096294920.1\|809188_809530_+\|ISC-system-2Fe-2S-type-ferredoxin	unknown	unknown	gnl\|CDD\|131062
NZ_CP023429.1\|WP_096294923.1\|810622_810955_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023429.1\|WP_096294936.1\|844999_845476_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023429.1\|WP_096294921.1\|809601_810240_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023429.1\|WP_096294926.1\|813028_815302_+\|5-methyltetrahydropteroyltriglutamate---homocysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|235367
NZ_CP023429.1\|WP_096294934.1\|843434_843632_-\|CsbD-family-protein	unknown	unknown	gnl\|CDD\|182452
NZ_CP023429.1\|WP_096294930.1\|826417_826897_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|223976
NZ_CP023429.1\|WP_096294928.1\|819858_820185_+\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_CP023429.1\|WP_096294922.1\|810428_810623_+\|Fe-S-cluster-assembly-protein-IscX	unknown	unknown	gnl\|CDD\|377339
NZ_CP023429.1\|WP_096294932.1\|837237_838548_-\|trigger-factor	unknown	unknown	gnl\|CDD\|234956
NZ_CP023429.1\|WP_096294919.1\|808309_808747_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP023429.1\|WP_096294927.1\|818951_819866_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NZ_CP023429.1\|WP_096294929.1\|824053_825424_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354

Protein	Function_ID	Function_description	E-value
NZ_CP023429.1\|WP_096294925.1\|812073_812967_+\|methylenetetrahydrofolate-reductase	gnl\|CDD\|181852	PRK09432, metF, methylenetetrahydrofolate reductase.	0
NZ_CP023429.1\|WP_096294935.1\|844171_844861_-\|pseudouridine-synthase	gnl\|CDD\|211327	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like. This group is comprised of eukaryotic and bacterial proteins similar to Escherichia coli RsuA. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E.coli RsuA makes psi516 in 16S RNA. Psi at this position is not generally conserved in other organisms.	1.09603e-78
NZ_CP023429.1\|WP_096294937.1\|845836_846562_+\|DNA-polymerase-III-subunit-epsilon	gnl\|CDD\|235574	PRK05711, PRK05711, DNA polymerase III subunit epsilon; Provisional.	9.01779e-103
NZ_CP023429.1\|WP_096294931.1\|836424_837054_-\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	1.25589e-149
NZ_CP023429.1\|WP_157742683.1\|811073_811304_-\|hypothetical-protein	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	9.95587e-11
NZ_CP023429.1\|WP_096294933.1\|839209_841663_-\|DNA-translocase-FtsK	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	3.17069e-179
NZ_CP023429.1\|WP_096296092.1\|825581_825887_-\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	5.1564e-07
NZ_CP023429.1\|WP_096294920.1\|809188_809530_+\|ISC-system-2Fe-2S-type-ferredoxin	gnl\|CDD\|131062	TIGR02007, 2Fe-2S_ferredoxin, ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	1.45318e-63
NZ_CP023429.1\|WP_096294930.1\|826417_826897_+\|peptidylprolyl-isomerase	gnl\|CDD\|223976	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones].	2.04632e-51
NZ_CP023429.1\|WP_096294926.1\|813028_815302_+\|5-methyltetrahydropteroyltriglutamate---homocysteine-S-methyltransferase	gnl\|CDD\|235367	PRK05222, PRK05222, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional.	0
NZ_CP023429.1\|WP_096294934.1\|843434_843632_-\|CsbD-family-protein	gnl\|CDD\|182452	PRK10428, PRK10428, hypothetical protein; Provisional.	1.03581e-18
NZ_CP023429.1\|WP_096294928.1\|819858_820185_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	6.57194e-60
NZ_CP023429.1\|WP_096294922.1\|810428_810623_+\|Fe-S-cluster-assembly-protein-IscX	gnl\|CDD\|377339	pfam04384, Fe-S_assembly, Iron-sulphur cluster assembly. This family of proteins is likely to be involved in the assembly of iron-sulphur clusters. It may function as an adaptor protein. In Escherichia coli IscX forms part of the isc operon, which encodes genes involved in iron-sulphur cluster assembly. Its structure is entirely alpha helical, and it contains a modified wing-helix structure, usually found in DNA-binding proteins. It binds to Fe2+ and Fe3+ ions and to the cysteine desulfurase IscS, the same surface of the protein is involved in both binding to iron and to IscS.	3.83458e-34
NZ_CP023429.1\|WP_096294932.1\|837237_838548_-\|trigger-factor	gnl\|CDD\|234956	PRK01490, tig, trigger factor; Provisional.	4.28877e-156
NZ_CP023429.1\|WP_096294919.1\|808309_808747_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	3.51448e-09
NZ_CP023429.1\|WP_096294927.1\|818951_819866_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	7.08053e-127
NZ_CP023429.1\|WP_096294929.1\|824053_825424_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	1.60817e-122

>NZ_CP023429.1|WP_096294928.1|819858_820185_+|CRISPR-associated-endonuclease-Cas2
MSEAKFMRIIVFFDLPVTTAAKRKVANQFRHFLLKDGYQMLQLSVYSRIVKGRDSLQKHHNRLCANLPEEGSVRCLEVTEKQFASMKLLLGELKVQEKKVNADQLLLF
>NZ_CP023429.1|WP_096294927.1|818951_819866_+|type-II-CRISPR-associated-endonuclease-Cas1
MTWRSVLIQNSSKLSLLRKQLNIQQEGESYTVPLEDIAVIVVENHGTLITAPLLSALAENGVTLLTCDEQFLPCGQWLPFSQYHRQLKTLKLQIYAGEPIKKQLWQKIVKQKILNQAFCVDETGNDIAAKRLRILASEVKSGDNGNQEAQAAALYFQVLFGERFTRTEDNEINAHLNYAYAVLRAAVARSLVLYGWLPALGLFHKSELNPFNLADDFIEPLRPLADLMVIQLKERGRLREQLNTMAKQQLISVLHHQMMIEQQSFSTLAAIDKMISSFQTALSQKNARFLKLPELQTLKAYQYE
>NZ_CP023429.1|WP_096294926.1|813028_815302_+|5-methyltetrahydropteroyltriglutamate---homocysteine-S-methyltransferase
MATLHFSGFPRVGAFRELKFAQEKYWRKEVSEQELLDVAKGLREKNWQHQTQADADFVAVADFTFYDHILDLQVATGSIPARFGFDSQNLTLEQYFQLARGNKDQFAIEMTKWFDTNYHYLVPEFHADTEFKANAAHYVQQLKEAQALGYKAKPTIVGPLTYLWIGKEKGATEFDRLSLLPKLLPVYVEILTELAAAGAEWIQIDEPALAVDLPQAWLDAYQDVYATLSQVNAKILLSTYFGSVAEHAGRLKALPVDGLHIDLVRVPEQLDAFADYDKVLSAGVIDGRNIWRANLNNVLATLEPLQAQLGERLWISSSCSLLHTPYDLSVEEKLKANKPALFSWLAFTLQKTQELRVLKTALNQGREAVAAELADSQAAADSRAASKEIHRDDVAQRLASLPADADQRKSPFAERIKAQQAWLNLPLLPTTNIGSFPQTTEIRQARAAFKKGELSAADYEAAMKKEIALVVEEQEKLDLDVLVHGEAERNDMVEYFGELLSGFAFTQYGWVQSYGSRCVKPPVIFGDVSRPNAMTVAWSTYAQTLTKRPMKGMLTGPVTILQWSFVRNDIPRSTVCKQIALALNDEVLDLEKAGIKVIQIDEPAIREGLPLKRADWDAYLAWASEAFRLSSTGCEDSTQIHTHMCYSEFNDILPAIASMDADVITIETSRSDMELLTAFGEFKYPNDIGPGVYDIHSPRVPTEAEVEHLLRKAIEVVPVERLWVNPDCGLKTRGWKETIEQLEVMMNVTEKLRKELA
>NZ_CP023429.1|WP_096294925.1|812073_812967_+|methylenetetrahydrofolate-reductase
MSYAKEINALNNSLCDLKGDINVSFEFFPPKNEQMETMLWDSIHRLKNLHPKFVSVTYGANSGERDRTHGIVKNIKQQTGLEAAPHLTGIDASPEELKQIAQDYWDSGIRRIVALRGDEPAGYAKKPFYAEDLVKVLRSVADFDISVAAYPEVHPEAKSAQADLINLKRKIDAGANHVITQFFFDVESYLRFRDRCVTVGIDAEIVPGILPVTNFKQLGKMAQVTNVKIPNWLARMYDGLDDDQGTRNLVAASIAIDMVKVLSREGVKDFHFYTLNRSELTYAICHTLGVRPLPNAA
>NZ_CP023429.1|WP_157742683.1|811073_811304_-|hypothetical-protein
MIPELPQNSVAVMGNAAFHKGKAEALLKEKGHTVLWLPPYSPDLNQIEKKRAWIKGVGNRLRMADVDWLFQACIDK
>NZ_CP023429.1|WP_096294923.1|810622_810955_+|hypothetical-protein
MDLPLGLYARAAHGLGGVALIAKEDTPSEKLSDGVLDETVYHFADGALLRCSMEQDEGNFDVEPNAVTCLPCEISYQVLAHPEHGRIKPEHKRFTDSCRHLFWLKMQKQD
>NZ_CP023429.1|WP_096294922.1|810428_810623_+|Fe-S-cluster-assembly-protein-IscX
MKWTDTQRIAEELYDAHGDIDPKTIRFTHLRELIMALPEFDDDPARCGERILEAVQQAWIEEAE
>NZ_CP023429.1|WP_096294921.1|809601_810240_-|hypothetical-protein
MNNALNAKLSKLVYGPVPQEPDYLTKAHPVDRLILLIRHIYHTLDEQHGLTQVTLHIHCGNMRGQVRLQPVAASANSAVIRLKRWNLYQRIAEQVLGCGQISVSLAKVKVEGAIEQSYCEEIVQQMIDGFGLTTDESTLSIQAADNAFAELPKQSSAYSQPEAPRIVSSRGKSLSRINTRPKTENYAAAQASLPKASSIKVSRFSFGGYKQK
>NZ_CP023429.1|WP_096294920.1|809188_809530_+|ISC-system-2Fe-2S-type-ferredoxin
MPKITVLPHATLCPEGAVIDNAPEGKTVLDVLLDYDIEVDHACEKSCACTTCHVIIRKGFDSLEEPTEIEEDLLDQAWGLEADSRLSCQAVLADEDLVVEIPKYTINHAREDH
>NZ_CP023429.1|WP_096294919.1|808309_808747_+|tetratricopeptide-repeat-protein
MESLNQDLYQQISALCDQGDDLADEGQFNEAVKQYKEAWKLLPEPKSQWEAATWILAAMGDAHFLNGKYRQAVKDLTEALAYINALDNPFIYLRLGQSQFELGEEKAALEALQTAYELGDEELWEGEDEKYLQFLAAKVDGIVIP
>NZ_CP023429.1|WP_096294929.1|824053_825424_-|FAD-binding-oxidoreductase
MHSHLFSSFQSFLHVSEILEPAPSFIIDQRRRFTSTPDIILQPHSVESVQKILRFCHENHITVTPQGGNTGLCGAAVARQGVLLNLSRLDKLREINLADNSMTVEAGMILQHAQEAAANAGRFFPLSLASEGSCQIGGNIACNAGGLNVLRYGSMRDLVLGLEIVLPNGELVSHLQPLHKNTTGYDLCHLFIGSEGTLGVITAATLKLFARPQTTATAWVGLSSIDEAVSLLTKIQSHFAERLSSFELISRFALDLSSQFSQLTKPTDADWHILMELTDSIPDTDLAEQLAEYLYTQGYENSVLAQSEQKRQELWILRENISASQRNLGTSIKHDIATPIANVADFVTECAAALKARFADIQIVCFGHLGDGSLHYNTFLPDIMGNEVYEYEDIINTIVYEHILKHQGTIAAEHGIGEIKNHWIPHVRDAAEIALMRAIKAQLDPHDIMNPGKLLP
>NZ_CP023429.1|WP_096296092.1|825581_825887_-|hypothetical-protein
MKNSLFAAALLSLTLAACGGSEPAKEAAVEAASAASAASVAAEAAADAAASAATEAASATTEATVEAASEASQAATQAASAAASATDAAASAAEAATSAAN
>NZ_CP023429.1|WP_096294930.1|826417_826897_+|peptidylprolyl-isomerase
MAIAKNSVVSLHYEMYDANNQLLDKTEEPIVYLHGGYDGIFPLVEEALHGKNVGETVEVALSPDDAFGEQDPELVRIEDVGVFPVEVEVGMMFEADDPETGEVLIYRVTDVADGKAVVDGNHPLAGMKVLFKATVEGIREASAEEIEHGHVHGPHGHQH
>NZ_CP023429.1|WP_096294931.1|836424_837054_-|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP
MTPDIQNYLVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDESANLVVAQLLFLESENPDKDIYFYINSPGGSVTAGMSIYDTMNFIKPNVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMIHQPLIHGGLSGQASDIEIHAKELIKIKEKLNRLLAKHCDRDLADLQRDTDRDNYMSADEAKEYGLIDQVLESRKALLAEIN
>NZ_CP023429.1|WP_096294932.1|837237_838548_-|trigger-factor
MSVTVETLENLERKVIVSLPWAEINAETDKRLKQTQRRVKIDGFRPGKAPLKMVAQMYGASTQNDVMNELVQRAFYDIAVSENLKVAGFPRFEGVEEQDDKAAFKIAAVFEVFPEVVIGDLSAQEVEKVTAAVGDEEVEKTVEILRKQRTCYNHIEREAKNDDRVIIDFEGKIDGELFEGGSSKNYAFVLGAGQMLPEFEAGIVGMKAGESKDVEVNFPEEYHGQEVAGKTAVFTITLNNVSEPTLPEVDAEFAKALGIEDGDVAKMREEVKKNVSREVERRVQDQTKDSVMEALLKAAELQVPNALVNEEATRLANEMKQNFVNQGMADAANLDLPIDMFKEQAERRVSLGLILAKVVEENKLEPTEEQIKAVVANFAESYEDPQEVIDWYYGDESRLQGPTSLAVESNVVDFVLGKAKVTEKTLSFDEVMDAQA
>NZ_CP023429.1|WP_096294933.1|839209_841663_-|DNA-translocase-FtsK
MATKSTKTTPKPKVKAKTEAAKPAVRRSAKPQPATQPNKLSESLKAAKALQKDEEKKARPEHVVNLINDTMWLLGLVVTIYLAISLLSFDMSDPAWSRSVANSGKVQNFGGLFGAYVSDIGYYLFGLSFWWWIIASGMFLYKNFRPLQKQENHKPYNHGVAALALFLLLVCSPILEHFAFDAVLNDSLPVGAGGLIGAFAGSGLSWLLGKSGSLLIMFVVLLLAISLLAQVSWLEVLAKTGRNAEKNLQNLKQKIADKKQQKADDTTDLRDTKPARRLLKEAKTIIAEPMQKIEGSSSNRKAVTVSVVPPPKIQTSLFDEHEESQTVGEYHKPGMNLLRMPKGEPAAVNPDMLQQTAERIESKLAEFGIGVQVVSATAGPVITRFEIEPAQGVKGSQIVALAKDLARSMSMQAVRVVETIAGKNTMGIELPNEHRQDVMLSEILSSEVFNEAQSKLTVALGKDISGNPVVGDLAKMPHLLVAGMTGSGKSVGVNGMIMSILYKATPDEVRFIMIDPKMLELSIYDGIPHLLCPVVTDMREAGQALNWCVAEMEKRYRLLSHAGVRNLDGFNKKVKEAKAAGKPLLNPFSLNPDDPEPLETLPLIVLVIDELADLMMTERKAVEQQIARLAQKARAAGIHMIVATQRPSVDVVTGLIKANIPTRMAFTVQSKIDSRTILDQMGADELLKYGDSLFLQPGSAEPTRVQGAFVSDDEVHKVVAHVKEQAPTHYIEGLLSGEAALETTNIVNPNADSDELFDQAVAFVLDSKKTSISALQRQLRVGYNRAANLMEALENAGVVTPADISGSRRILAQKDQL
>NZ_CP023429.1|WP_096294934.1|843434_843632_-|CsbD-family-protein
MNWDQVEGKWEQLKGKAKVKWGQLTDDDWAVVEGQRDQLAGRIQERYGYTKEQVEKELDDWVNDR
>NZ_CP023429.1|WP_096294935.1|844171_844861_-|pseudouridine-synthase
MQLLKYLQSQGLGSRKQCQWLIDNDCVVINGDIWNNAKSIIEPVDVKTLSIDGDNVMVVPMPYFYILLNKPADYETSHKPQQYPSVFSLFPDHMRNIDMQAVGRLDADTTGVLLITNDGQFNHRVTSPKHKVAKVYRVTLKHAAGDSLCETLKNGVLLHDDNETVHAAEAYLEDANTLIMAINEGKYHQVKRMVAAAGNRVEQLHRDKFGDWDTQNLAAGEWKFIQIHY
>NZ_CP023429.1|WP_096294936.1|844999_845476_-|hypothetical-protein
MPESIFKQVSLNILRLHQHTIRSLLATQGCGDCEIHEAVYVTLDGRYYVGLPCMPSESPSDTGILLIEDKASQARLSWVARAREIKQKDNLYQRVSSALQRRLERNKGKHSHAAPSCLLELTPQQGRLTTGSKDLSLSPHDLMKALYPATHKLGEFAL
>NZ_CP023429.1|WP_096294937.1|845836_846562_+|DNA-polymerase-III-subunit-epsilon
MSKRQIIFDTETTGFLDDPTNRMIEFAGVEMINRQLTGNYLHLYIHPERDIPEDAVKVHGLTLEVLEEKNAPVFAAVGNKIADFIRDAEIIAHNAPFDEGFLNREFAQMGLPNVRELGCQVTDTLAMAREMFPGQKNSLDVLCNRFSVDRSKRVLHGALIDCELLADVYLAMTRQQFDLMGGAGEESCDGQTPVNPVQTTRNGRLKVVRADETELAEHEQYLDGLGDECIWRKSATAEQQA

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Crispr_ID: NZ_CP023429_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023429_2

2058630-2060185

TypeI

Consensus_repeat	Method
GTTTCAACACACAGCCGCCCGTGGGCGGCTGA	CRISPRCasFinder
GTTTCAACACACAGCCGCCCGTGGGCGGCTGA	CRT
GTTTCAACACACAGCCGCCCGTGGGCGGCTG	PILER-CR

23 spacers

RT,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NZ_CP023429_2

>merge|NZ_CP023429|2|2058630-2060185|CRISPRCasFinder,CRT,PILER-CR
ATTTCAACACACAGCCGCCCGAAGGCGGCTGAATCTACTGAATTATTAGGAGATGGATTAGTACCTGTTTCAACACACAGCCGCCCGTGGGCGGCTGAAATCCATGAAAAGCCGAGCAAGACGATTGATGACGTTTCAACACACAGCCGCCCGTGGGCGGCTGACCGCCTCAAACATCGCGGGCTACGCAAAAGAATGGTTTCAACACACAGCCGCCCGTGGGCGGCTGAACTGGCATTTTTTGTAACCATACCCAAGAGATTTTGTTTCAACACACAGCCGCCCGTGGGCGGCTGAATCATCGTAAATTGGAGCAGTTTCCGGCATATCGGGTTTCAACACACAGCCGCCCGTGGGCGGCTGAATCATCGTAAATTGGAGCAGTTTCCGGCATATCGGGTTTCAACACACAGCCGCCCGTGGGCGGCTGAGTTCGTCAGGCAAATCTGCCTGTTCGGATTTCGGTTTCAACACACAGCCGCCCGTGGGCGGCTGAAGGTCTTCACAACCGAAACCGTCAAGCCATGTTTTGTTTCAACACACAGCCGCCCGTGGGCGGCTGACACAGGTTCAGGTTTTGGGGCGTTTTCGTCAGCTTTGTTTCAACACACAGCCGCCCGTGGCGGCTGACCGGACAGATGGCCGGTAATGTTGCATTAGGCGGGGGTTTCAACACACAGCCGCCCGTGGGCGGCTGATTCGACTTGTCCGCCAGACAGCTCAAAACTAGGCAGTTTCAACACACAGCCGCCCGTGGGCGGCTGAGCTCTTAGTAGCGATGATTCTACTGCCTTTTATAGTTTCAACACACAGCCGCCCGTGGGCGGCTGACATTAATACCAGCTATGCAAACGGAACAGTCTATGTTTCAACACACAGCCGCCCGTGGGCGGCTGACACCTTTCAGGCCGTCTGAAAATCCCACTCTGTACAGTTTCAACACACAGCCGCCCGTGGGCGGCTGAGTTCGTCAGGCAAATCTGCCTGTTCGGATTTCGGTTTCAACACACAGCCGCCCGTGGGCGGCTGAGTAAATACATTTTTGAGATTTACAATTATGTAAAGTTTCAACACACAGCCGCCCGTGGGCGGCTGACACAACAAAGCTGCCAGCAGCTACCCCATAACAGTTTCAACACACAGCCGCCCGTGGGCGGCTGAGTTATTTGAGTTTTAGATCACTTTCTTCGTTTTCGTTTCAACACACAGCCGCCCGTGGGCGGCTGACCGGCAGTGGTGTTGGCCACGCGGGAATTTGTTGGTTTCAACACACAGCCGCCCGTGGGCGGCTGACGAGTTGGCGCAGAATATTGAGGCCATACAAACCGTTTCAACACACAGCCGCCCGTGGGCGGCTGTTCTGGTAGATGTGCATTGTTTTTTGGTGATAGAGTTTCAACACACAGCCGCCCGTGGGCGGCTGACTGGCCAAAACACTGATGCTGAAAGGTCTGTTGGGTTTCAACACACAGCCGCCCGTGGGCGGCTGACCTAATAGAGTACCTACCATAATAAAAAGCTGTAGTTTCAACACACAGCCGCCCGTGGGCGGCTGA

>NZ_CP023429|2|2|2058630-2060185|CRISPRCasFinder
ATTTCAACACACAGCCGCCCGAAGGCGGCTGA	ATCTACTGAATTATTAGGAGATGGATTAGTACCT
GTTTCAACACACAGCCGCCCGTGGGCGGCTGA	AATCCATGAAAAGCCGAGCAAGACGATTGATGAC
GTTTCAACACACAGCCGCCCGTGGGCGGCTGA	CCGCCTCAAACATCGCGGGCTACGCAAAAGAATG
GTTTCAACACACAGCCGCCCGTGGGCGGCTGA	ACTGGCATTTTTTGTAACCATACCCAAGAGATTTT
GTTTCAACACACAGCCGCCCGTGGGCGGCTGA	ATCATCGTAAATTGGAGCAGTTTCCGGCATATCGG
GTTTCAACACACAGCCGCCCGTGGGCGGCTGA	ATCATCGTAAATTGGAGCAGTTTCCGGCATATCGG
GTTTCAACACACAGCCGCCCGTGGGCGGCTGA	GTTCGTCAGGCAAATCTGCCTGTTCGGATTTCG
GTTTCAACACACAGCCGCCCGTGGGCGGCTGA	AGGTCTTCACAACCGAAACCGTCAAGCCATGTTTT
GTTTCAACACACAGCCGCCCGTGGGCGGCTGA	CACAGGTTCAGGTTTTGGGGCGTTTTCGTCAGCTTT
GTTTCAACACACAGCCGCCCGTGGCGGCTGAC	CGGACAGATGGCCGGTAATGTTGCATTAGGCGGGG
GTTTCAACACACAGCCGCCCGTGGGCGGCTGA	TTCGACTTGTCCGCCAGACAGCTCAAAACTAGGCA
GTTTCAACACACAGCCGCCCGTGGGCGGCTGA	GCTCTTAGTAGCGATGATTCTACTGCCTTTTATA
GTTTCAACACACAGCCGCCCGTGGGCGGCTGA	CATTAATACCAGCTATGCAAACGGAACAGTCTAT
GTTTCAACACACAGCCGCCCGTGGGCGGCTGA	CACCTTTCAGGCCGTCTGAAAATCCCACTCTGTACA
GTTTCAACACACAGCCGCCCGTGGGCGGCTGA	GTTCGTCAGGCAAATCTGCCTGTTCGGATTTCG
GTTTCAACACACAGCCGCCCGTGGGCGGCTGA	GTAAATACATTTTTGAGATTTACAATTATGTAAA
GTTTCAACACACAGCCGCCCGTGGGCGGCTGA	CACAACAAAGCTGCCAGCAGCTACCCCATAACA
GTTTCAACACACAGCCGCCCGTGGGCGGCTGA	GTTATTTGAGTTTTAGATCACTTTCTTCGTTTTC
GTTTCAACACACAGCCGCCCGTGGGCGGCTGA	CCGGCAGTGGTGTTGGCCACGCGGGAATTTGTTG
GTTTCAACACACAGCCGCCCGTGGGCGGCTGA	CGAGTTGGCGCAGAATATTGAGGCCATACAAACC
GTTTCAACACACAGCCGCCCGTGGGCGGCTGT	TCTGGTAGATGTGCATTGTTTTTTGGTGATAGA
GTTTCAACACACAGCCGCCCGTGGGCGGCTGA	CTGGCCAAAACACTGATGCTGAAAGGTCTGTTGG
GTTTCAACACACAGCCGCCCGTGGGCGGCTGA	CCTAATAGAGTACCTACCATAATAAAAAGCTGTA
GTTTCAACACACAGCCGCCCGTGGGCGGCTGA

>NZ_CP023429|2|2|2058630-2060185|CRT
ATTTCAACACACAGCCGCCCGAAGGCGGCTGA	ATCTACTGAATTATTAGGAGATGGATTAGTACCT
GTTTCAACACACAGCCGCCCGTGGGCGGCTGA	AATCCATGAAAAGCCGAGCAAGACGATTGATGAC
GTTTCAACACACAGCCGCCCGTGGGCGGCTGA	CCGCCTCAAACATCGCGGGCTACGCAAAAGAATG
GTTTCAACACACAGCCGCCCGTGGGCGGCTGA	ACTGGCATTTTTTGTAACCATACCCAAGAGATTTT
GTTTCAACACACAGCCGCCCGTGGGCGGCTGA	ATCATCGTAAATTGGAGCAGTTTCCGGCATATCGG
GTTTCAACACACAGCCGCCCGTGGGCGGCTGA	ATCATCGTAAATTGGAGCAGTTTCCGGCATATCGG
GTTTCAACACACAGCCGCCCGTGGGCGGCTGA	GTTCGTCAGGCAAATCTGCCTGTTCGGATTTCG
GTTTCAACACACAGCCGCCCGTGGGCGGCTGA	AGGTCTTCACAACCGAAACCGTCAAGCCATGTTTT
GTTTCAACACACAGCCGCCCGTGGGCGGCTGA	CACAGGTTCAGGTTTTGGGGCGTTTTCGTCAGCTTT
GTTTCAACACACAGCCGCCCGTGGCGGCTGAC	CGGACAGATGGCCGGTAATGTTGCATTAGGCGGGG
GTTTCAACACACAGCCGCCCGTGGGCGGCTGA	TTCGACTTGTCCGCCAGACAGCTCAAAACTAGGCA
GTTTCAACACACAGCCGCCCGTGGGCGGCTGA	GCTCTTAGTAGCGATGATTCTACTGCCTTTTATA
GTTTCAACACACAGCCGCCCGTGGGCGGCTGA	CATTAATACCAGCTATGCAAACGGAACAGTCTAT
GTTTCAACACACAGCCGCCCGTGGGCGGCTGA	CACCTTTCAGGCCGTCTGAAAATCCCACTCTGTACA
GTTTCAACACACAGCCGCCCGTGGGCGGCTGA	GTTCGTCAGGCAAATCTGCCTGTTCGGATTTCG
GTTTCAACACACAGCCGCCCGTGGGCGGCTGA	GTAAATACATTTTTGAGATTTACAATTATGTAAA
GTTTCAACACACAGCCGCCCGTGGGCGGCTGA	CACAACAAAGCTGCCAGCAGCTACCCCATAACA
GTTTCAACACACAGCCGCCCGTGGGCGGCTGA	GTTATTTGAGTTTTAGATCACTTTCTTCGTTTTC
GTTTCAACACACAGCCGCCCGTGGGCGGCTGA	CCGGCAGTGGTGTTGGCCACGCGGGAATTTGTTG
GTTTCAACACACAGCCGCCCGTGGGCGGCTGA	CGAGTTGGCGCAGAATATTGAGGCCATACAAACC
GTTTCAACACACAGCCGCCCGTGGGCGGCTGT	TCTGGTAGATGTGCATTGTTTTTTGGTGATAGA
GTTTCAACACACAGCCGCCCGTGGGCGGCTGA	CTGGCCAAAACACTGATGCTGAAAGGTCTGTTGG
GTTTCAACACACAGCCGCCCGTGGGCGGCTGA	CCTAATAGAGTACCTACCATAATAAAAAGCTGTA
GTTTCAACACACAGCCGCCCGTGGGCGGCTGA

>NZ_CP023429|2|2|2058631-2060184|PILER-CR
TTTCAACACACAGCCGCCCGAAGGCGGCTGA	ATCTACTGAATTATTAGGAGATGGATTAGTACCTG
TTTCAACACACAGCCGCCCGTGGGCGGCTGA	AATCCATGAAAAGCCGAGCAAGACGATTGATGACG
TTTCAACACACAGCCGCCCGTGGGCGGCTGA	CCGCCTCAAACATCGCGGGCTACGCAAAAGAATGG
TTTCAACACACAGCCGCCCGTGGGCGGCTGA	ACTGGCATTTTTTGTAACCATACCCAAGAGATTTTG
TTTCAACACACAGCCGCCCGTGGGCGGCTGA	ATCATCGTAAATTGGAGCAGTTTCCGGCATATCGGG
TTTCAACACACAGCCGCCCGTGGGCGGCTGA	ATCATCGTAAATTGGAGCAGTTTCCGGCATATCGGG
TTTCAACACACAGCCGCCCGTGGGCGGCTGA	GTTCGTCAGGCAAATCTGCCTGTTCGGATTTCGG
TTTCAACACACAGCCGCCCGTGGGCGGCTGA	AGGTCTTCACAACCGAAACCGTCAAGCCATGTTTTG
TTTCAACACACAGCCGCCCGTGGGCGGCTGA	CACAGGTTCAGGTTTTGGGGCGTTTTCGTCAGCTTTG
TTTCAACACACAGCCGCCCGTGGCGGCTGAC	CGGACAGATGGCCGGTAATGTTGCATTAGGCGGGGGTTTCAAC
ACACAGCCGCCCGTGGGCGGCTGATTCGACT	TGTCCGCCAGACAGCTCAAAACTAGGCAGTTTCAAC
ACACAGCCGCCCGTGGGCGGCTGAGCTCTTA	GTAGCGATGATTCTACTGCCTTTTATAGTTTCAAC
ACACAGCCGCCCGTGGGCGGCTGACATTAAT	ACCAGCTATGCAAACGGAACAGTCTATGTTTCAAC
ACACAGCCGCCCGTGGGCGGCTGACACCTTT	CAGGCCGTCTGAAAATCCCACTCTGTACAGTTTCAAC
ACACAGCCGCCCGTGGGCGGCTGAGTTCGTC	AGGCAAATCTGCCTGTTCGGATTTCGGTTTCAAC
ACACAGCCGCCCGTGGGCGGCTGAGTAAATA	CATTTTTGAGATTTACAATTATGTAAAGTTTCAAC
ACACAGCCGCCCGTGGGCGGCTGACACAACA	AAGCTGCCAGCAGCTACCCCATAACAGTTTCAAC
ACACAGCCGCCCGTGGGCGGCTGAGTTATTT	GAGTTTTAGATCACTTTCTTCGTTTTCGTTTCAAC
ACACAGCCGCCCGTGGGCGGCTGACCGGCAG	TGGTGTTGGCCACGCGGGAATTTGTTGGTTTCAAC
ACACAGCCGCCCGTGGGCGGCTGACGAGTTG	GCGCAGAATATTGAGGCCATACAAACCGTTTCAAC
ACACAGCCGCCCGTGGGCGGCTGTTCTGGTA	GATGTGCATTGTTTTTTGGTGATAGAGTTTCAAC
ACACAGCCGCCCGTGGGCGGCTGACTGGCCA	AAACACTGATGCTGAAAGGTCTGTTGGGTTTCAAC
ACACAGCCGCCCGTGGGCGGCTGACCTAATA	GAGTACCTACCATAATAAAAAGCTGTAGTTTCAAC
ACACAGCCGCCCGTGGGCGGCTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023429.1\|WP_096296176.1\|2068140_2070426_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NZ_CP023429.1\|WP_096295762.1\|2061923_2063411_-\|RNA-directed-DNA-polymerase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|238824
NZ_CP023429.1\|WP_096295755.1\|2041594_2041801_-\|putative-selenoprotein	unknown	unknown	gnl\|CDD\|225434
NZ_CP023429.1\|WP_096295765.1\|2064379_2065243_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NZ_CP023429.1\|WP_157742775.1\|2050769_2050976_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023429.1\|WP_157742778.1\|2072199_2072325_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|372570
NZ_CP023429.1\|WP_096295768.1\|2067827_2068058_-\|DUF2188-domain-containing-protein	unknown	unknown	gnl\|CDD\|378323
NZ_CP023429.1\|WP_096295759.1\|2051768_2052590_+\|CoA-ester-lyase	unknown	unknown	gnl\|CDD\|225184
NZ_CP023429.1\|WP_157742776.1\|2054769_2058402_-\|bifunctional-proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase-PutA	unknown	unknown	gnl\|CDD\|237018
NZ_CP023429.1\|WP_096295758.1\|2047178_2048723_+\|glycine/betaine-ABC-transporter	unknown	unknown	gnl\|CDD\|376718
NZ_CP023429.1\|WP_157742774.1\|2041218_2041518_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023429.1\|WP_096295767.1\|2067031_2067706_-\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
NZ_CP023429.1\|WP_096295766.1\|2065220_2067035_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|187887
NZ_CP023429.1\|WP_096296175.1\|2044503_2045769_-\|divalent-metal-cation-transporter	unknown	unknown	gnl\|CDD\|224826
NZ_CP023429.1\|WP_096295756.1\|2043389_2044430_+\|tRNA-dihydrouridine(20/20a)-synthase-DusA	unknown	unknown	gnl\|CDD\|236991
NZ_CP023429.1\|WP_096295763.1\|2063421_2064054_-\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NZ_CP023429.1\|WP_096295757.1\|2046007_2046190_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023429.1\|WP_157742777.1\|2071976_2072288_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366234
NZ_CP023429.1\|WP_096295760.1\|2052832_2054380_+\|glutamate--cysteine-ligase	unknown	unknown	gnl\|CDD\|235001
NZ_CP023429.1\|WP_157742680.1\|2071344_2072010_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|379098

Protein	Function_ID	Function_description	E-value
NZ_CP023429.1\|WP_096296176.1\|2068140_2070426_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	2.14578e-55
NZ_CP023429.1\|WP_096295755.1\|2041594_2041801_-\|putative-selenoprotein	gnl\|CDD\|225434	COG2879, COG2879, Uncharacterized small protein [Function unknown].	2.39407e-22
NZ_CP023429.1\|WP_096295765.1\|2064379_2065243_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	1.38247e-152
NZ_CP023429.1\|WP_157742776.1\|2054769_2058402_-\|bifunctional-proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase-PutA	gnl\|CDD\|237018	PRK11905, PRK11905, bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed.	0
NZ_CP023429.1\|WP_157742778.1\|2072199_2072325_+\|IS3-family-transposase	gnl\|CDD\|372570	pfam13333, rve_2, Integrase core domain.	2.5156e-10
NZ_CP023429.1\|WP_096295768.1\|2067827_2068058_-\|DUF2188-domain-containing-protein	gnl\|CDD\|378323	pfam09954, DUF2188, Uncharacterized protein conserved in bacteria (DUF2188). This domain, found in various hypothetical bacterial proteins, has no known function.	6.22453e-16
NZ_CP023429.1\|WP_096295759.1\|2051768_2052590_+\|CoA-ester-lyase	gnl\|CDD\|225184	COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport and metabolism].	7.78347e-59
NZ_CP023429.1\|WP_096295762.1\|2061923_2063411_-\|RNA-directed-DNA-polymerase	gnl\|CDD\|238824	cd01646, RT_Bac_retron_I, RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA branches out from a small ssRNA molecule via a 2'-5'phosphodiester linkage. Bacterial retron RTs produce cDNA corresponding to only a small portion of the retron genome.	6.41701e-31
NZ_CP023429.1\|WP_096295758.1\|2047178_2048723_+\|glycine/betaine-ABC-transporter	gnl\|CDD\|376718	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter.	1.04435e-109
NZ_CP023429.1\|WP_096295767.1\|2067031_2067706_-\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	1.38303e-114
NZ_CP023429.1\|WP_096295760.1\|2052832_2054380_+\|glutamate--cysteine-ligase	gnl\|CDD\|235001	PRK02107, PRK02107, glutamate--cysteine ligase; Provisional.	2.4134e-179
NZ_CP023429.1\|WP_096296175.1\|2044503_2045769_-\|divalent-metal-cation-transporter	gnl\|CDD\|224826	COG1914, MntH, Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism].	3.53965e-64
NZ_CP023429.1\|WP_096295756.1\|2043389_2044430_+\|tRNA-dihydrouridine(20/20a)-synthase-DusA	gnl\|CDD\|236991	PRK11815, PRK11815, tRNA dihydrouridine(20/20a) synthase DusA.	0
NZ_CP023429.1\|WP_096295763.1\|2063421_2064054_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	1.32831e-42
NZ_CP023429.1\|WP_157742777.1\|2071976_2072288_+\|hypothetical-protein	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	2.07897e-07
NZ_CP023429.1\|WP_096295766.1\|2065220_2067035_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|187887	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein, distant homologs of Cas8 proteins; signature gene for I-C subtype; also known as Csd1 family.	0
NZ_CP023429.1\|WP_157742680.1\|2071344_2072010_+\|IS3-family-transposase	gnl\|CDD\|379098	pfam13276, HTH_21, HTH-like domain. This domain contains a predicted helix-turn-helix suggesting a DNA-binding function.	4.76658e-09

>NZ_CP023429.1|WP_157742776.1|2054769_2058402_-|bifunctional-proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase-PutA
MPFDFRRKIHVPICPSQQTLLRQAVTEAYRRDEVEAVNDMLQQAQMTDEERRAADDLARRLVTQVRASRTKASGVDALMHEFSLSSEEGVALMCLAEALLRIPDNATRNKLIADKLSDGDWKSHLNHSPSLFVNAAAWGLLVTGKLTTTTNEQNLGSALSRVLGKGGAPLIRKGVDYGMRMLGKQFVTGQTIEEALGNGKEREKLGYRFSFDMLGEAAFTQADADRYYQDYATAIHAIGKDAAGQGVYDGNGISVKLSAIHPRYFRAQHERVMTELLPKLKELFVLAKQYDIGLNIDAEEANRLELSLDLMEALVSDPDLAGYNGIGFVVQAYQKRCPFVIDYLVDLARRNNQKLMIRLVKGAYWDSEIKWAQVDGLNGYPVYTRKVHTDISYLACARKLLDAQDAVFPQFATHNAYTLAAICEMGKGKDFEHQCLHGMGETLYDQVVGPQNLGRRVRIYAPVGTHETLLAYLVRRLLENGANSSFVNQIVDEKISIDELIRSPFDTIAEEGIHLHAALPLPRDLYGKGRLNSQGVDLSNENVLQQLQQKMNQAAAQAFQTASMINGKLREANAPQDVNNPADHGDVVGTVSFADAALAQEAIAEAVAAQAAWGATPAAERAACLRRLADLMEQHTPALMMLAVREAGKTLQNAIAEAREAVDFCRYYADEAGQTLPANTQGVGTIVAISPWNFPLAIFTGEVVAALAAGNTVVAKPAEQTSLIASYAVSLMHQAGVPSEALQLVLGAGETGAALTQDPRISGVIFTGSTEVARLINQTLAKRDDNPVLIAETGGQNAMIVDSTALAEQVCADVLNSAFDSAGQRCSALRILCVQEDVADHMIEMIKGAMNELVVGNPQLLNTDVGPVIDAEAQTNLLAHIGKMKGTAKSFHEIKVSDGIDDAQSTFVAPILFELNNLNELQREVFGPVLHVVRYRADELDSLIDQINSKGYALTHGVHSRIDATVDHIRKRIEAGNVYINRNIVGAVVGVQPFGGHGLSGTGPKAGGPFYLQRLSRLKQWAAPTLSKVGQADDEVLKRLEAVLHNLPISQECKLSIAAALGQARIRTLRHAESVLAGPTGERNVLSWHAPKRVWIYGGDLVQSFTALVQLAAAGVQGVIEANHPLAAEVAHLGNLLIVDKPENAGISHVVALEDLPGGRKQALAATDGALIRILPSENGLDILQVFEEISCSINTTAAGGNASLMAMSD
>NZ_CP023429.1|WP_096295760.1|2052832_2054380_+|glutamate--cysteine-ligase
MNIETLPLSGGNIGIERESLRTTADGHLAGTRHPEALGNVYTHPNITIDYGEALLELVTDPHQFPKAVYQQLLELHQFSAQNIGEESMWAASMPCRLPDNPEHIEIGYFGQSNGAKLKRLYRIGLSYRYGRTMQMIAGVHFNYSPPESLWAALVGQEGAEPTDTWRNERYMGMIRNIQRYGWLICHLFGTSPACDQSFQPAQNVLDRLHEQSFTWKNATTLRMSQLGYQNKVDFSVSFNHLNEYIRDLGAAVLTPAPVYEYLGLRGPAGLYRQISTNILQIANEYYSGARPKQVIKKGELPISALSARGIAYVELRLLDNNPYDPAGISLEQIHFLESFMLWCLLKDSPAFTNTDYNEANHNRLRTACSGLSEGFRLFKNGRSISAQDWANEILHEILPIAERLDQGSGNNGYREAVQSQIRANRGESLRLPQRVQAEMAEQEFLPWAMGLTAQHLETLKQPLPQDVQAKLEAQSRQSLQEFAEIEAKAADEIPFDDYLANYFNPLHECLAKLTV
>NZ_CP023429.1|WP_096295759.1|2051768_2052590_+|CoA-ester-lyase
MLHRPVPKIFLFVPATRPERIAKAFDCGADEVIVDWEDTVEPERKAAARADTEDYCGRADTPEVWVRINGTHGPFHTDDVAAAKSIRKIKGLVLPKTVRADEISSLHHATGKPVIADIESAQGMAGIGQLARSDGLFAMTYGCLDLSNDLGVSYGTAAAQTIFDRLRTDMLLHSRINHLHPPIETTFPDFNDHEANRRHAEYWRDMGFGGVLCIHPKQVVAVKEALRPSENLLAFAAKVVAEAEHSGQAVFQVDGQMIDAPVIERAKWILQQN
>NZ_CP023429.1|WP_157742775.1|2050769_2050976_-|hypothetical-protein
MFWQRSPLSYNVAFQSFLLHFFMVGFVGGKCFFTFGLHGICLRVLKCGDTALLIGGYPAGVREALICI
>NZ_CP023429.1|WP_096295758.1|2047178_2048723_+|glycine/betaine-ABC-transporter
MSASQEKSPSSCKRPNYFLWTSLLVGLLAVTAVVNPTLLTGTISDISQFFYLKFDWLIMWLPLLAFTVGLSVALSPRFGNIRLGGKDAKPGYSFLSWMNMLFTAGIGVGIVFFGPIEALWHYFHSPAGIQAEGLAEYQKVENAMSLALHVWGIPAWSLYMIAGLVMAYFTYQHKTECTPAAPLQYAFKHKKWAKPLGIIVTGMAILSIAMSVSSSIAMASVQIASGLKIITGFAFDAIGWKAAILTALALLYTAGAVLPIDKGMKFLGDWTVYLSVVLLLFVFAVGPTHYFLSTVTVAIGNIITKTIHHSFELYMFRNRDWVVWYPMAYWVWWVTWAPFVGVFLAKISKGRTLREFVFASVMIPAGFIVIWFSVFSGFSLLDTVEGSGRLAEIANKGDYEGTFYYLLNMLPLSGFTKPVTIALFLGFIVTTVTSAAISLGIMTSNDGRSENKFRAVVWSVFMTLISYAVIFSGKMEGIKAVGSFSGFPFVFVMYLWFAALWRQLNSDVPRTCKE
>NZ_CP023429.1|WP_096295757.1|2046007_2046190_+|hypothetical-protein
MCFIQSNTFQTAFKIIPYQRKDCVTPPAAPLLDAPKKPPVRGWLHADSTKANAITVIIFS
>NZ_CP023429.1|WP_096296175.1|2044503_2045769_-|divalent-metal-cation-transporter
MAQNQTHTSTSTWQSRMSALGPGIMMASAAIGGSHLIASTQAGALYGWQLALIIILTNLLKYPFFRFSAHYTMDTGKSLVQGYAEKSRFYLWVFALLCFVSATISTGAVAVVTAAIIKMALPNLGLETGVIAALIMLSCLLILVSGQYRALDRVSKAIVASLAVATVIAAGIAMSRGMQMQPDFIEPTPWTLAGLGFIIALMGWMPAPIEISAINSLWVTEKQKIEPSSYRDGIFDFNVGFYTSAALAVVFLVLGAYVQYGNGEAVQMAGGKYIGQLINMYAVTIGEWAHPLVAFIAFACMYGTTITVIDGYARAMSESVRLIRHKESVRKGELFGWYLWVAGTGLALILWFNSAMAELLKFAMISAFLAAPVFAWLNYRLVKADKKHKLSKGMEALAVAGLIYLVGFAVLFLLNLGGFLA
>NZ_CP023429.1|WP_096295756.1|2043389_2044430_+|tRNA-dihydrouridine(20/20a)-synthase-DusA
MTSKKLPPRRLSVAPMLDWTDRHYRHMARQITQNTWLYSEMINSGAIVYGDKNRFLMFNEGENPVALQLGGSDPAELAKAAQAVEEYGYDEVNLNCGCPSPRVQKGAFGACLMNEVDLVADCLNAMQDAVQIPVTIKHRIGVDRQAEYQPLADFVGTLRDKTDCKTFIVHARNAWLDGLSPKENREVPPLKYDYVYRLKQEFPELEILINGGITTNGQIAEHLRHVDGVVVGREAYHNPMVMREWDQLFYGSSHLPIEYADLVQRLFTYSQVQIQSGRGTILRHIVRHSLGLMHGLKGARAWRRMLSDATLLKDNDGTLILDAWKEVERANRFGGGLWAHSLQRPV
>NZ_CP023429.1|WP_096295755.1|2041594_2041801_-|putative-selenoprotein
MNNNTLWRRIRRALETARRTANLMAGMPDYENYVARQRRHNPNAPVMTKLQFQDYCSKRRCGSGGRCC
>NZ_CP023429.1|WP_157742774.1|2041218_2041518_+|hypothetical-protein
MGKTFLKHLRPMTVAGGLSLHRLELGTVPAGKLGSRLNAKLAELFHVSISACSAVIVQSVEESAKITVPLLCASVLFYRPKQPLLPKHRKCQPKTRPED
>NZ_CP023429.1|WP_096295762.1|2061923_2063411_-|RNA-directed-DNA-polymerase
MNRTPILKLDWDKARSFFLKHESYCNIDLPKYFSFSDLLEKISQEFIGKDLNDFCQSKSAMGKQDGVNHLIYANKDGKLSWRPFQIIHPLVYVALVHEITKEDNWGKLQTRFKKFQSNEKIKCLSIPVQSENKQSDKAQQISSWWEQVEQQSILLALEYDYIFDTDVADCYGSVYTHAIAWAVESKQVAKIERSNHSLLGNFIDKSIQNIQNQQTNGIPQGSVLMDFIAEIILGYIDRILSVTLKKQEIKNYKILRYRDDYRIFVCNPNDGEKILKYLSEIMMPFGFKLNASKTKGSQDVITQSIKKDKLAWLAIPQNHRISLQKQILLIRQHSINFPNSGSLNVALNKFDKKLEKARVINNLEQLVSIVTDIAYHNPKVIPVCCAIISKLLNRLDDHGAMAKLVHQKLSRMPNSGFTQIWLQRMLKADLNTYLFSEKMCDLKQISLWNNKWVKESKMLDVLNNTLIFQQDEFDKLESIIPNEEIDIFNLDIFNY
>NZ_CP023429.1|WP_096295763.1|2063421_2064054_-|CRISPR-associated-protein-Cas4
MENISLSALQHYAFCPRQCALIHNEQAWAENFLTAQGRALHERVDSGEPETRKGVRFERSVHVAAEKLGLSGILDMVEHDIRTGRLKPVEYKRGKPKPEPFDEIQLCAQAMCLEEMTGQTVGEGALWYMQTRHRVPVAFSDGLRAQTLDVIRKVHELLDSGTTPPPEYGKRCKACSLVEICQPALLGKDRSVGYVKGLFGETFLANRNNK
>NZ_CP023429.1|WP_096295765.1|2064379_2065243_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSIQNRYEFVYFFDVTNGNPNGDPDAGNMPRLDPESSKGLVTDVCLKRKIRNFVELASENQPGYEIYVKDKGVLNLQNKRAYEALGIESEAKKLPKDEAKARDITAWMCKNFFDIRTFGAVMTTEVNSGQVRGPVQLAFAQSIDPIVPLEISITRMAVTNEKDLEKERTMGRKYIVPYALYRVHGFISANLAAKTGFSDEDLGKLWQALQLMFEHDRSAARGEMAARKLIVFKHDSVLGSQPAHKLFERVKVERISGESGTPAQSFADYRISVDSDGLDGVEVIEKL
>NZ_CP023429.1|WP_096295766.1|2065220_2067035_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MILASLARYYRRLATQNDDVGNPKVPPYGFSEEKIGWVLVLDKEGRLQDAVPNLTADKKPQPKLMSVPQSFKRPGTTPKPFFLWDKTAYALGVEANKDKAQAKTEPVVPSEKTFEAFRQYHLDLLQHEQDEGLQALYRFLQHWQPAQFADYPCLSETPDANVVFALDKPSALIHKREEAQTLWAGRLKSDEAEQGLCLISGEEAPIARLHPAIKGVFGGQSSGGSIISFNKESFASFGKEQGANAPVSEVSAFAYTTALNYLLRRENGHCLTIGDASTVFWAEAADSETAAAAEDFFADIMTPPDDEQQSQKVFNVLEQIAKGRPLQEIAPDLSPDTRFYILGLAPNAARISIRFWLDTTFGQLAANLAQHWQDLALEPRPWKTAPSVWRLLLQTAVLGKSENISPVLAGEMMRAVIGGTLYPMSLLAQLIARIRADGDANGLRVAMIKAVLQRRFRKGLIHEEVSMSLNTESRNQAYLLGRLFAVLERIQYQALGELNAGIADRYYGSASAVPFSVFPRLLSGAKHHLSRLRKDKAGMAVNLDKDLGEIVAMLPETFPRHLSIDEQGRFAIGYYQQKQSYFAKKTPQLPKHMKENKHVHPKPL
>NZ_CP023429.1|WP_096295767.1|2067031_2067706_-|type-I-C-CRISPR-associated-protein-Cas5
MNRVRLHIWGDYACFTRPEMKVERVSYDVITPSAARGVLAAVHWKPAIRWVIDRIYVLKPIRFESVRRNELGGKISESKVSGAMRRKSVEGLYMLIDDDRQQRAATVLKDVGYVIEAHAVLTAKAGADDTITKHIEMFKRRALKGQCFQQPCMGVREFPAHFAWVDDDGVFPESCLSESEANRDLGWMLHDIDFDHGNLPKFFRAEMKNGVIEVPPFYAEEVKA
>NZ_CP023429.1|WP_096295768.1|2067827_2068058_-|DUF2188-domain-containing-protein
MSKKNQHVVLHSDGWAVKGAGNSKATAVYGTQKETIARAEVIAKNQRADTKIHGADGRIRAGNSYGNDPCPPRDKK
>NZ_CP023429.1|WP_096296176.1|2068140_2070426_-|CRISPR-associated-helicase/endonuclease-Cas3
MVQICNGKTIYHAHSAENLPESQWQTLSSHLSRVGEMAAGFAGFFGAEETARHTGLLHDLGKYTPEFAARLRGGKSVDHATAGAKIAVERFSDKAGKLMAFCIAGHHAGLANGDGDGDNRRTLTQRLALSFGTDIPDLAPVWQQEIALPEKLPAPPLKADAHHKWFSYAFFTRMLYSCLVDADFLDTEAFYASVENKAVQRGGHPDLKALQQRFNTFIESFRRPAEQIPASEAEQRPAALNRLRSNILDHAVAQAGEQPGLFTLTVPTGGGKTFTSMAFALEHAKLHGMRRVIYVIPFTSIIEQNAAEFRKAFGDLGEAAVLEHHSTFNDSKLKDQNSKDKLCQASENWDMPVVVTTAVQFFESLFADRSSRCRKLHNIAGSVIILDEAQMLPLNLLLPVMQAIKELARNYRCSVVMCTATQPAVQAEHGFYRGFENVREIAPNPTALFEQLRRTTVQHIGLQTDADLLEKLGHHRQMLIIVNNRRHARSLYDSAKPLGGVFHLTTLMCAKHRSQMLETIRGRLKNGEPCRVIATSLIEAGVDVDFPLVMRAEAGLDSVAQAAGRCNREGKRLAEESFVWIFQPESQWKAPAELGLLSGVMRSVVRQHADDLLSVEAIGSYFREVYQLKGAELDQRRILAMHHNAGSSLNFPFQTIAAKFRMIETHMQPLIIPLDDEAERLIDSLRYADQIGGLLRKLQPYTVQVPERAMQALFRDGCIEPINDERFGKQFYCLIGLGLYDKVAGLSWDNSIFIAAEESVI
>NZ_CP023429.1|WP_157742680.1|2071344_2072010_+|IS3-family-transposase
MALHEGGERLPKAHESPQRKERRQSCETVQTLGAEHPLKYLPHSAGIPKSSFHYHIGKAGPDAAAKTAVGEVCRRHKGRYGHRRIAAVLSRNKKKVRRIMGLLGLKAKVRSKKAYRPQAIGEASDSILNREFTAGKPAGKWLTDVAEFKCTNGKLYLSPILDEAFAKPPDADSVQGAAAQRVQTYHTIGRRAGSAQRRNALQMAVLQRSPMCLTGRLRPIL
>NZ_CP023429.1|WP_157742777.1|2071976_2072288_+|hypothetical-protein
MFNREIAAYSLGRRANGEMVAQMLDQAFGRLKGQTPLLHSGQGVLCRTEAYRTKLAEKGMVQSMSRKGTPGQCADGAFLRYTENGGFLSGRCAVGGGADSGHR
>NZ_CP023429.1|WP_157742778.1|2072199_2072325_+|IS3-family-transposase
MERFFGTLKTEGFYQEGALSVAELTVVIDDYIHYYNHERIV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP023429_1	1.3\|820416\|30\|NZ_CP023429\|PILER-CR,CRISPRCasFinder,CRT	820416-820445	30	NZ_CP045351	Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence	789409-789438	4	0.867
NZ_CP023429_1	1.13\|821076\|30\|NZ_CP023429\|CRISPRCasFinder,CRT	821076-821105	30	NC_019746	Gloeocapsa sp. PCC 7428 plasmid pGLO7428.01, complete sequence	70027-70056	5	0.833
NZ_CP023429_1	1.3\|820416\|30\|NZ_CP023429\|PILER-CR,CRISPRCasFinder,CRT	820416-820445	30	MK387337	Vibrio phage ValB1MD, complete genome	99879-99908	6	0.8
NZ_CP023429_1	1.4\|820482\|30\|NZ_CP023429\|PILER-CR,CRISPRCasFinder,CRT	820482-820511	30	NZ_LR135244	Enterococcus faecium isolate E6988 plasmid 2	153554-153583	6	0.8
NZ_CP023429_1	1.4\|820482\|30\|NZ_CP023429\|PILER-CR,CRISPRCasFinder,CRT	820482-820511	30	NZ_LR135255	Enterococcus faecium isolate E7098 plasmid 2	133307-133336	6	0.8
NZ_CP023429_1	1.4\|820482\|30\|NZ_CP023429\|PILER-CR,CRISPRCasFinder,CRT	820482-820511	30	NZ_CP025123	Planococcus sp. MB-3u-03 plasmid unnamed12	4537-4566	6	0.8
NZ_CP023429_1	1.11\|820944\|30\|NZ_CP023429\|PILER-CR,CRISPRCasFinder,CRT	820944-820973	30	NC_049494	Acinetobacter phage vB_AbaM_PhT2, complete genome	85161-85190	6	0.8
NZ_CP023429_1	1.11\|820944\|30\|NZ_CP023429\|PILER-CR,CRISPRCasFinder,CRT	820944-820973	30	NZ_CP017255	Clostridium taeniosporum strain 1/k plasmid pCt2, complete sequence	56317-56346	6	0.8
NZ_CP023429_1	1.3\|820416\|30\|NZ_CP023429\|PILER-CR,CRISPRCasFinder,CRT	820416-820445	30	NZ_CP031089	Spiroplasma phoeniceum P40 plasmid pSPh535, complete sequence	17554-17583	7	0.767
NZ_CP023429_1	1.3\|820416\|30\|NZ_CP023429\|PILER-CR,CRISPRCasFinder,CRT	820416-820445	30	NZ_CP031090	Spiroplasma phoeniceum P40 plasmid pSPh387, complete sequence	7861-7890	7	0.767
NZ_CP023429_1	1.3\|820416\|30\|NZ_CP023429\|PILER-CR,CRISPRCasFinder,CRT	820416-820445	30	NZ_CP031090	Spiroplasma phoeniceum P40 plasmid pSPh387, complete sequence	22904-22933	7	0.767
NZ_CP023429_1	1.3\|820416\|30\|NZ_CP023429\|PILER-CR,CRISPRCasFinder,CRT	820416-820445	30	NZ_CP031090	Spiroplasma phoeniceum P40 plasmid pSPh387, complete sequence	37171-37200	7	0.767
NZ_CP023429_1	1.3\|820416\|30\|NZ_CP023429\|PILER-CR,CRISPRCasFinder,CRT	820416-820445	30	NZ_CP033813	Staphylococcus haemolyticus strain FDAARGOS_517 plasmid unnamed2	14681-14710	7	0.767
NZ_CP023429_1	1.3\|820416\|30\|NZ_CP023429\|PILER-CR,CRISPRCasFinder,CRT	820416-820445	30	NZ_CP023496	Staphylococcus simulans strain FDAARGOS_383 plasmid unnamed, complete sequence	43963-43992	7	0.767
NZ_CP023429_1	1.3\|820416\|30\|NZ_CP023429\|PILER-CR,CRISPRCasFinder,CRT	820416-820445	30	CP020755	Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-16, complete sequence	566595-566624	7	0.767
NZ_CP023429_1	1.3\|820416\|30\|NZ_CP023429\|PILER-CR,CRISPRCasFinder,CRT	820416-820445	30	NZ_CP021062	Bacillus thuringiensis strain ATCC 10792 plasmid poh1, complete sequence	197686-197715	7	0.767
NZ_CP023429_1	1.3\|820416\|30\|NZ_CP023429\|PILER-CR,CRISPRCasFinder,CRT	820416-820445	30	NC_020385	Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-328, complete sequence	241264-241293	7	0.767
NZ_CP023429_1	1.4\|820482\|30\|NZ_CP023429\|PILER-CR,CRISPRCasFinder,CRT	820482-820511	30	MH791411	UNVERIFIED: Escherichia phage Ecwhy_1, complete genome	165217-165246	7	0.767
NZ_CP023429_1	1.4\|820482\|30\|NZ_CP023429\|PILER-CR,CRISPRCasFinder,CRT	820482-820511	30	MT446416	UNVERIFIED: Escherichia virus TH47, complete genome	309368-309397	7	0.767
NZ_CP023429_1	1.4\|820482\|30\|NZ_CP023429\|PILER-CR,CRISPRCasFinder,CRT	820482-820511	30	MH494197	Escherichia phage CMSTMSU, complete genome	345517-345546	7	0.767
NZ_CP023429_2	2.7\|2059061\|33\|NZ_CP023429\|CRISPRCasFinder,CRT	2059061-2059093	33	MN034152	Leviviridae sp. isolate H1_Rhizo_26_FD_scaffold_619 RNA-dependent RNA polymerase (H1Rhizo26FD619_000001) and hypothetical protein (H1Rhizo26FD619_000002) genes, complete cds; and hypothetical protein (H1Rhizo26FD619_000003) gene, partial cds	1476-1508	7	0.788
NZ_CP023429_2	2.15\|2059595\|33\|NZ_CP023429\|CRISPRCasFinder,CRT	2059595-2059627	33	MN034152	Leviviridae sp. isolate H1_Rhizo_26_FD_scaffold_619 RNA-dependent RNA polymerase (H1Rhizo26FD619_000001) and hypothetical protein (H1Rhizo26FD619_000002) genes, complete cds; and hypothetical protein (H1Rhizo26FD619_000003) gene, partial cds	1476-1508	7	0.788
NZ_CP023429_1	1.2\|820351\|29\|NZ_CP023429\|PILER-CR,CRISPRCasFinder,CRT	820351-820379	29	NZ_CP046575	Rhodococcus sp. WAY2 plasmid pRWAY03, complete sequence	113371-113399	8	0.724
NZ_CP023429_1	1.3\|820416\|30\|NZ_CP023429\|PILER-CR,CRISPRCasFinder,CRT	820416-820445	30	NZ_KT901798	Clostridium botulinum strain GA0702E1CS plasmid pGA0702E1CS, complete sequence	28032-28061	8	0.733
NZ_CP023429_1	1.3\|820416\|30\|NZ_CP023429\|PILER-CR,CRISPRCasFinder,CRT	820416-820445	30	NZ_KJ776585	Clostridium botulinum strain DB2 plasmid pDB2, complete sequence	24844-24873	8	0.733
NZ_CP023429_1	1.3\|820416\|30\|NZ_CP023429\|PILER-CR,CRISPRCasFinder,CRT	820416-820445	30	NZ_KJ776583	Clostridium botulinum strain KapchunkaB3 plasmid pKAPB3, complete sequence	24853-24882	8	0.733
NZ_CP023429_1	1.3\|820416\|30\|NZ_CP023429\|PILER-CR,CRISPRCasFinder,CRT	820416-820445	30	NZ_KJ776576	Clostridium botulinum strain Eklund2B plasmid pEklund2B, complete sequence	25047-25076	8	0.733
NZ_CP023429_1	1.3\|820416\|30\|NZ_CP023429\|PILER-CR,CRISPRCasFinder,CRT	820416-820445	30	NZ_KJ776581	Clostridium botulinum strain IFR_05/025 plasmid p05/025, complete sequence	31063-31092	8	0.733
NZ_CP023429_1	1.3\|820416\|30\|NZ_CP023429\|PILER-CR,CRISPRCasFinder,CRT	820416-820445	30	NZ_KJ776579	Clostridium botulinum strain KapchunkaB2 plasmid pKAPB2, complete sequence	24853-24882	8	0.733
NZ_CP023429_1	1.3\|820416\|30\|NZ_CP023429\|PILER-CR,CRISPRCasFinder,CRT	820416-820445	30	NC_018653	Clostridium botulinum B str. Eklund 17B (NRP) plasmid p17BNRP, complete sequence	25030-25059	8	0.733
NZ_CP023429_1	1.3\|820416\|30\|NZ_CP023429\|PILER-CR,CRISPRCasFinder,CRT	820416-820445	30	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	175110-175139	8	0.733
NZ_CP023429_1	1.3\|820416\|30\|NZ_CP023429\|PILER-CR,CRISPRCasFinder,CRT	820416-820445	30	NC_010680	Clostridium botulinum B str. Eklund 17B (NRP) plasmid pCLL, complete sequence	11499-11528	8	0.733
NZ_CP023429_1	1.3\|820416\|30\|NZ_CP023429\|PILER-CR,CRISPRCasFinder,CRT	820416-820445	30	NZ_CP011154	Bacillus cereus strain CMCC P0011 plasmid pRML05, complete sequence	481304-481333	8	0.733
NZ_CP023429_1	1.3\|820416\|30\|NZ_CP023429\|PILER-CR,CRISPRCasFinder,CRT	820416-820445	30	CP024913	Cyanobacterium sp. HL-69 plasmid pCHL69-1, complete sequence	64153-64182	8	0.733
NZ_CP023429_1	1.3\|820416\|30\|NZ_CP023429\|PILER-CR,CRISPRCasFinder,CRT	820416-820445	30	NZ_CP011152	Bacillus cereus strain CMCC P0021 plasmid pRML04, complete sequence	65582-65611	8	0.733
NZ_CP023429_1	1.3\|820416\|30\|NZ_CP023429\|PILER-CR,CRISPRCasFinder,CRT	820416-820445	30	NZ_CP045607	Bacillus cereus strain SB1 plasmid p1, complete sequence	385349-385378	8	0.733
NZ_CP023429_1	1.5\|820548\|30\|NZ_CP023429\|PILER-CR,CRISPRCasFinder,CRT	820548-820577	30	NZ_CP029455	Bacillus cereus strain FORC087 plasmid pFORC087.1, complete sequence	422870-422899	8	0.733
NZ_CP023429_1	1.5\|820548\|30\|NZ_CP023429\|PILER-CR,CRISPRCasFinder,CRT	820548-820577	30	NZ_CP007625	Bacillus pseudomycoides strain 219298 plasmid unnamed, complete sequence	122669-122698	8	0.733
NZ_CP023429_1	1.5\|820548\|30\|NZ_CP023429\|PILER-CR,CRISPRCasFinder,CRT	820548-820577	30	NZ_CP009650	Bacillus pseudomycoides strain BTZ plasmid pBTZ_1, complete sequence	104773-104802	8	0.733
NZ_CP023429_1	1.5\|820548\|30\|NZ_CP023429\|PILER-CR,CRISPRCasFinder,CRT	820548-820577	30	CP016195	Bacillus thuringiensis serovar coreanensis strain ST7 plasmid pST7-1, complete sequence	46329-46358	8	0.733
NZ_CP023429_1	1.5\|820548\|30\|NZ_CP023429\|PILER-CR,CRISPRCasFinder,CRT	820548-820577	30	NZ_CP016590	Bacillus thuringiensis strain KNU-07 plasmid pBTKNU07-02, complete sequence	127801-127830	8	0.733
NZ_CP023429_1	1.7\|820680\|30\|NZ_CP023429\|PILER-CR,CRISPRCasFinder,CRT	820680-820709	30	NZ_CP018385	Burkholderia pseudomallei strain 2008724860 plasmid p1, complete sequence	260171-260200	8	0.733
NZ_CP023429_1	1.9\|820812\|30\|NZ_CP023429\|PILER-CR,CRISPRCasFinder,CRT	820812-820841	30	NZ_CP040763	Paracoccus sp. 2251 plasmid unnamed4, complete sequence	197676-197705	8	0.733
NZ_CP023429_1	1.10\|820878\|30\|NZ_CP023429\|PILER-CR,CRISPRCasFinder,CRT	820878-820907	30	NZ_CP041739	Enterococcus faecalis EnGen0107 strain B594 plasmid p1, complete sequence	38218-38247	8	0.733
NZ_CP023429_1	1.10\|820878\|30\|NZ_CP023429\|PILER-CR,CRISPRCasFinder,CRT	820878-820907	30	NZ_CP048881	Oceanospirillales bacterium S2-4-1H plasmid pC, complete sequence	5299-5328	8	0.733
NZ_CP023429_1	1.10\|820878\|30\|NZ_CP023429\|PILER-CR,CRISPRCasFinder,CRT	820878-820907	30	NZ_CP030046	Enterococcus faecalis strain C54 plasmid pC54, complete sequence	54915-54944	8	0.733
NZ_CP023429_1	1.10\|820878\|30\|NZ_CP023429\|PILER-CR,CRISPRCasFinder,CRT	820878-820907	30	NZ_CP030043	Enterococcus faecalis strain C25 plasmid pC25-1, complete sequence	35382-35411	8	0.733
NZ_CP023429_2	2.7\|2059061\|33\|NZ_CP023429\|CRISPRCasFinder,CRT	2059061-2059093	33	MN035404	Leviviridae sp. isolate H4_Bulk_46_scaffold_722 RNA-dependent RNA polymerase (H4Bulk46722_000001) and hypothetical protein (H4Bulk46722_000002) genes, complete cds; and hypothetical protein (H4Bulk46722_000003) gene, partial cds	1496-1528	8	0.758
NZ_CP023429_2	2.15\|2059595\|33\|NZ_CP023429\|CRISPRCasFinder,CRT	2059595-2059627	33	MN035404	Leviviridae sp. isolate H4_Bulk_46_scaffold_722 RNA-dependent RNA polymerase (H4Bulk46722_000001) and hypothetical protein (H4Bulk46722_000002) genes, complete cds; and hypothetical protein (H4Bulk46722_000003) gene, partial cds	1496-1528	8	0.758
NZ_CP023429_2	2.30\|2059061\|34\|NZ_CP023429\|PILER-CR	2059061-2059094	34	MN034152	Leviviridae sp. isolate H1_Rhizo_26_FD_scaffold_619 RNA-dependent RNA polymerase (H1Rhizo26FD619_000001) and hypothetical protein (H1Rhizo26FD619_000002) genes, complete cds; and hypothetical protein (H1Rhizo26FD619_000003) gene, partial cds	1476-1509	8	0.765
NZ_CP023429_2	2.38\|2059602\|34\|NZ_CP023429\|PILER-CR	2059602-2059635	34	MN034152	Leviviridae sp. isolate H1_Rhizo_26_FD_scaffold_619 RNA-dependent RNA polymerase (H1Rhizo26FD619_000001) and hypothetical protein (H1Rhizo26FD619_000002) genes, complete cds; and hypothetical protein (H1Rhizo26FD619_000003) gene, partial cds	1476-1509	8	0.765
NZ_CP023429_1	1.6\|820614\|30\|NZ_CP023429\|PILER-CR,CRISPRCasFinder,CRT	820614-820643	30	NZ_CP024314	Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence	2296186-2296215	9	0.7
NZ_CP023429_1	1.10\|820878\|30\|NZ_CP023429\|PILER-CR,CRISPRCasFinder,CRT	820878-820907	30	MN694284	Marine virus AFVG_250M474, complete genome	23781-23810	9	0.7
NZ_CP023429_2	2.7\|2059061\|33\|NZ_CP023429\|CRISPRCasFinder,CRT	2059061-2059093	33	MN033022	Leviviridae sp. isolate H4_Bulk_47_scaffold_457_e_2721 RNA-dependent RNA polymerase (H4Bulk47457e2721_000001) gene, partial cds; hypothetical protein (H4Bulk47457e2721_000002) gene, complete cds; and hypothetical protein (H4Bulk47457e2721_000003) gene, partial cds	1460-1492	9	0.727
NZ_CP023429_2	2.15\|2059595\|33\|NZ_CP023429\|CRISPRCasFinder,CRT	2059595-2059627	33	MN033022	Leviviridae sp. isolate H4_Bulk_47_scaffold_457_e_2721 RNA-dependent RNA polymerase (H4Bulk47457e2721_000001) gene, partial cds; hypothetical protein (H4Bulk47457e2721_000002) gene, complete cds; and hypothetical protein (H4Bulk47457e2721_000003) gene, partial cds	1460-1492	9	0.727
NZ_CP023429_2	2.30\|2059061\|34\|NZ_CP023429\|PILER-CR	2059061-2059094	34	MN035404	Leviviridae sp. isolate H4_Bulk_46_scaffold_722 RNA-dependent RNA polymerase (H4Bulk46722_000001) and hypothetical protein (H4Bulk46722_000002) genes, complete cds; and hypothetical protein (H4Bulk46722_000003) gene, partial cds	1496-1529	9	0.735
NZ_CP023429_2	2.38\|2059602\|34\|NZ_CP023429\|PILER-CR	2059602-2059635	34	MN035404	Leviviridae sp. isolate H4_Bulk_46_scaffold_722 RNA-dependent RNA polymerase (H4Bulk46722_000001) and hypothetical protein (H4Bulk46722_000002) genes, complete cds; and hypothetical protein (H4Bulk46722_000003) gene, partial cds	1496-1529	9	0.735
NZ_CP023429_1	1.7\|820680\|30\|NZ_CP023429\|PILER-CR,CRISPRCasFinder,CRT	820680-820709	30	NZ_CP022369	Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence	230925-230954	10	0.667
NZ_CP023429_1	1.7\|820680\|30\|NZ_CP023429\|PILER-CR,CRISPRCasFinder,CRT	820680-820709	30	NZ_CP032349	Azospirillum brasilense strain MTCC4039 plasmid p3, complete sequence	116396-116425	10	0.667
NZ_CP023429_2	2.30\|2059061\|34\|NZ_CP023429\|PILER-CR	2059061-2059094	34	MN033022	Leviviridae sp. isolate H4_Bulk_47_scaffold_457_e_2721 RNA-dependent RNA polymerase (H4Bulk47457e2721_000001) gene, partial cds; hypothetical protein (H4Bulk47457e2721_000002) gene, complete cds; and hypothetical protein (H4Bulk47457e2721_000003) gene, partial cds	1460-1493	10	0.706
NZ_CP023429_2	2.38\|2059602\|34\|NZ_CP023429\|PILER-CR	2059602-2059635	34	MN033022	Leviviridae sp. isolate H4_Bulk_47_scaffold_457_e_2721 RNA-dependent RNA polymerase (H4Bulk47457e2721_000001) gene, partial cds; hypothetical protein (H4Bulk47457e2721_000002) gene, complete cds; and hypothetical protein (H4Bulk47457e2721_000003) gene, partial cds	1460-1493	10	0.706
NZ_CP023429_2	2.16\|2059660\|34\|NZ_CP023429\|CRISPRCasFinder,CRT	2059660-2059693	34	NC_018265	Melissococcus plutonius DAT561 plasmid 1, complete sequence	14844-14877	11	0.676
NZ_CP023429_2	2.16\|2059660\|34\|NZ_CP023429\|CRISPRCasFinder,CRT	2059660-2059693	34	NZ_CP006684	Melissococcus plutonius S1 plasmid pMEPL_178, complete sequence	166424-166457	11	0.676
NZ_CP023429_2	2.16\|2059660\|34\|NZ_CP023429\|CRISPRCasFinder,CRT	2059660-2059693	34	NZ_AP021886	Melissococcus plutonius strain DAT1033 plasmid pMP1, complete sequence	166429-166462	11	0.676
NZ_CP023429_2	2.16\|2059660\|34\|NZ_CP023429\|CRISPRCasFinder,CRT	2059660-2059693	34	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	667752-667785	11	0.676
NZ_CP023429_2	2.16\|2059660\|34\|NZ_CP023429\|CRISPRCasFinder,CRT	2059660-2059693	34	NZ_CP039706	Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence	67931-67964	11	0.676
NZ_CP023429_2	2.16\|2059660\|34\|NZ_CP023429\|CRISPRCasFinder,CRT	2059660-2059693	34	NZ_CP033246	Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence	585988-586021	11	0.676
NZ_CP023429_2	2.16\|2059660\|34\|NZ_CP023429\|CRISPRCasFinder,CRT	2059660-2059693	34	NZ_CP033248	Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence	586034-586067	11	0.676
NZ_CP023429_2	2.16\|2059660\|34\|NZ_CP023429\|CRISPRCasFinder,CRT	2059660-2059693	34	NZ_AP018525	Melissococcus plutonius strain DAT585 plasmid pMP1, complete sequence	166251-166284	11	0.676
NZ_CP023429_2	2.16\|2059660\|34\|NZ_CP023429\|CRISPRCasFinder,CRT	2059660-2059693	34	NZ_CP013238	Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence	748527-748560	11	0.676
NZ_CP023429_2	2.16\|2059660\|34\|NZ_CP023429\|CRISPRCasFinder,CRT	2059660-2059693	34	NZ_AP019717	Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence	71156-71189	11	0.676

1. spacer 1.3|820416|30|NZ_CP023429|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045351 (Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence) position: , mismatch: 4, identity: 0.867

ctttgaaatttatcaataaaggttaaaaaa	CRISPR spacer
ttttctaatttatcaataaaggttaaaaat	Protospacer
.***  ***********************

2. spacer 1.13|821076|30|NZ_CP023429|CRISPRCasFinder,CRT matches to NC_019746 (Gloeocapsa sp. PCC 7428 plasmid pGLO7428.01, complete sequence) position: , mismatch: 5, identity: 0.833

aaccttctaattgtctcgttttgtgtatct-	CRISPR spacer
aagcttctaattgtctccttttg-gtatgct	Protospacer
** ************** ***** **** .

3. spacer 1.3|820416|30|NZ_CP023429|PILER-CR,CRISPRCasFinder,CRT matches to MK387337 (Vibrio phage ValB1MD, complete genome) position: , mismatch: 6, identity: 0.8

ctttgaaatttatcaataaaggttaaaaaa	CRISPR spacer
cattagaatttatcaataaagtttataaag	Protospacer
* **..*************** *** ***.

4. spacer 1.4|820482|30|NZ_CP023429|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR135244 (Enterococcus faecium isolate E6988 plasmid 2) position: , mismatch: 6, identity: 0.8

tagttatgctgatgtaagaaaatatccaat	CRISPR spacer
aatagatgctgatgtaaggaaatttccaat	Protospacer
 *   *************.**** ******

5. spacer 1.4|820482|30|NZ_CP023429|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR135255 (Enterococcus faecium isolate E7098 plasmid 2) position: , mismatch: 6, identity: 0.8

tagttatgctgatgtaagaaaatatccaat	CRISPR spacer
aatagatgctgatgtaaggaaatttccaat	Protospacer
 *   *************.**** ******

6. spacer 1.4|820482|30|NZ_CP023429|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025123 (Planococcus sp. MB-3u-03 plasmid unnamed12) position: , mismatch: 6, identity: 0.8

tagttatgctgatgtaagaaaatatccaat	CRISPR spacer
tcgaaatgctgatggaagaaaaaatccaaa	Protospacer
* *  ********* ******* ******

7. spacer 1.11|820944|30|NZ_CP023429|PILER-CR,CRISPRCasFinder,CRT matches to NC_049494 (Acinetobacter phage vB_AbaM_PhT2, complete genome) position: , mismatch: 6, identity: 0.8

ttccttgtttgtgctaaacttcatttaatt	CRISPR spacer
tgcagtgtttgtgctagacttcattttata	Protospacer
* *  ***********.********* **

8. spacer 1.11|820944|30|NZ_CP023429|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017255 (Clostridium taeniosporum strain 1/k plasmid pCt2, complete sequence) position: , mismatch: 6, identity: 0.8

ttccttgtttgtgctaaacttcatttaatt	CRISPR spacer
ttagttgtttgtgctaaacttaatctatat	Protospacer
**  ***************** **.**  *

9. spacer 1.3|820416|30|NZ_CP023429|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031089 (Spiroplasma phoeniceum P40 plasmid pSPh535, complete sequence) position: , mismatch: 7, identity: 0.767

ctttgaaatttatcaataaaggttaaaaaa	CRISPR spacer
taaataaatttatcaataaattttaaaaaa	Protospacer
.    ***************  ********

10. spacer 1.3|820416|30|NZ_CP023429|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031090 (Spiroplasma phoeniceum P40 plasmid pSPh387, complete sequence) position: , mismatch: 7, identity: 0.767

ctttgaaatttatcaataaaggttaaaaaa	CRISPR spacer
taaataaatttatcaataaattttaaaaaa	Protospacer
.    ***************  ********

11. spacer 1.3|820416|30|NZ_CP023429|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031090 (Spiroplasma phoeniceum P40 plasmid pSPh387, complete sequence) position: , mismatch: 7, identity: 0.767

ctttgaaatttatcaataaaggttaaaaaa	CRISPR spacer
taaataaatttatcaataaattttaaaaaa	Protospacer
.    ***************  ********

12. spacer 1.3|820416|30|NZ_CP023429|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031090 (Spiroplasma phoeniceum P40 plasmid pSPh387, complete sequence) position: , mismatch: 7, identity: 0.767

ctttgaaatttatcaataaaggttaaaaaa	CRISPR spacer
taaataaatttatcaataaattttaaaaaa	Protospacer
.    ***************  ********

13. spacer 1.3|820416|30|NZ_CP023429|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033813 (Staphylococcus haemolyticus strain FDAARGOS_517 plasmid unnamed2) position: , mismatch: 7, identity: 0.767

ctttgaaatttatcaataaaggttaaaaaa	CRISPR spacer
aaatcaaatttatcaataaaaggtaaaaac	Protospacer
   * ***************.* ******

14. spacer 1.3|820416|30|NZ_CP023429|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023496 (Staphylococcus simulans strain FDAARGOS_383 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

ctttgaaatttatcaataaaggttaaaaaa	CRISPR spacer
aaatcaaatttatcaataaaaggtaaaaac	Protospacer
   * ***************.* ******

15. spacer 1.3|820416|30|NZ_CP023429|PILER-CR,CRISPRCasFinder,CRT matches to CP020755 (Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-16, complete sequence) position: , mismatch: 7, identity: 0.767

ctttgaaatttatcaataaaggttaaaaaa	CRISPR spacer
aatccaaatttatcaataaaagttaaatat	Protospacer
  *. ***************.****** *

16. spacer 1.3|820416|30|NZ_CP023429|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021062 (Bacillus thuringiensis strain ATCC 10792 plasmid poh1, complete sequence) position: , mismatch: 7, identity: 0.767

ctttgaaatttatcaataaaggttaaaaaa	CRISPR spacer
aatccaaatttatcaataaaagttaaatat	Protospacer
  *. ***************.****** *

17. spacer 1.3|820416|30|NZ_CP023429|PILER-CR,CRISPRCasFinder,CRT matches to NC_020385 (Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-328, complete sequence) position: , mismatch: 7, identity: 0.767

ctttgaaatttatcaataaaggttaaaaaa	CRISPR spacer
aatccaaatttatcaataaaagttaaatat	Protospacer
  *. ***************.****** *

18. spacer 1.4|820482|30|NZ_CP023429|PILER-CR,CRISPRCasFinder,CRT matches to MH791411 (UNVERIFIED: Escherichia phage Ecwhy_1, complete genome) position: , mismatch: 7, identity: 0.767

tagttatgctgatgtaagaaaatatccaat	CRISPR spacer
aagttatgctgatgtaagtatatatgataa	Protospacer
 ***************** * ****   *

19. spacer 1.4|820482|30|NZ_CP023429|PILER-CR,CRISPRCasFinder,CRT matches to MT446416 (UNVERIFIED: Escherichia virus TH47, complete genome) position: , mismatch: 7, identity: 0.767

tagttatgctgatgtaagaaaatatccaat	CRISPR spacer
aagttatgctgatgtaagtatatatgataa	Protospacer
 ***************** * ****   *

20. spacer 1.4|820482|30|NZ_CP023429|PILER-CR,CRISPRCasFinder,CRT matches to MH494197 (Escherichia phage CMSTMSU, complete genome) position: , mismatch: 7, identity: 0.767

tagttatgctgatgtaagaaaatatccaat	CRISPR spacer
aagttatgctgatgtaagtatatatgataa	Protospacer
 ***************** * ****   *

21. spacer 2.7|2059061|33|NZ_CP023429|CRISPRCasFinder,CRT matches to MN034152 (Leviviridae sp. isolate H1_Rhizo_26_FD_scaffold_619 RNA-dependent RNA polymerase (H1Rhizo26FD619_000001) and hypothetical protein (H1Rhizo26FD619_000002) genes, complete cds; and hypothetical protein (H1Rhizo26FD619_000003) gene, partial cds) position: , mismatch: 7, identity: 0.788

gttcgtcaggcaaatctgcctgttcggatttcg	CRISPR spacer
attcgtcaggcaaatttgcctgttcggaaagaa	Protospacer
.**************.************    .

22. spacer 2.15|2059595|33|NZ_CP023429|CRISPRCasFinder,CRT matches to MN034152 (Leviviridae sp. isolate H1_Rhizo_26_FD_scaffold_619 RNA-dependent RNA polymerase (H1Rhizo26FD619_000001) and hypothetical protein (H1Rhizo26FD619_000002) genes, complete cds; and hypothetical protein (H1Rhizo26FD619_000003) gene, partial cds) position: , mismatch: 7, identity: 0.788

gttcgtcaggcaaatctgcctgttcggatttcg	CRISPR spacer
attcgtcaggcaaatttgcctgttcggaaagaa	Protospacer
.**************.************    .

23. spacer 1.2|820351|29|NZ_CP023429|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046575 (Rhodococcus sp. WAY2 plasmid pRWAY03, complete sequence) position: , mismatch: 8, identity: 0.724

gaaaaaaagttgggctgcgcggttgcgaa	CRISPR spacer
gaaaaaaagttggggtgcgcgccatctgt	Protospacer
************** ****** .  * .

24. spacer 1.3|820416|30|NZ_CP023429|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KT901798 (Clostridium botulinum strain GA0702E1CS plasmid pGA0702E1CS, complete sequence) position: , mismatch: 8, identity: 0.733

ctttgaaatttatcaataaaggttaaaaaa	CRISPR spacer
ttagaaaatttatcaataatggataaaatt	Protospacer
.*  .************** ** *****

25. spacer 1.3|820416|30|NZ_CP023429|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KJ776585 (Clostridium botulinum strain DB2 plasmid pDB2, complete sequence) position: , mismatch: 8, identity: 0.733

ctttgaaatttatcaataaaggttaaaaaa	CRISPR spacer
ttagaaaatttatcaataatggataaaatt	Protospacer
.*  .************** ** *****

26. spacer 1.3|820416|30|NZ_CP023429|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KJ776583 (Clostridium botulinum strain KapchunkaB3 plasmid pKAPB3, complete sequence) position: , mismatch: 8, identity: 0.733

ctttgaaatttatcaataaaggttaaaaaa	CRISPR spacer
ttagaaaatttatcaataatggataaaatt	Protospacer
.*  .************** ** *****

27. spacer 1.3|820416|30|NZ_CP023429|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KJ776576 (Clostridium botulinum strain Eklund2B plasmid pEklund2B, complete sequence) position: , mismatch: 8, identity: 0.733

ctttgaaatttatcaataaaggttaaaaaa	CRISPR spacer
ttagaaaatttatcaataatggataaaatt	Protospacer
.*  .************** ** *****

28. spacer 1.3|820416|30|NZ_CP023429|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KJ776581 (Clostridium botulinum strain IFR_05/025 plasmid p05/025, complete sequence) position: , mismatch: 8, identity: 0.733

ctttgaaatttatcaataaaggttaaaaaa	CRISPR spacer
ttagaaaatttatcaataatggataaaatt	Protospacer
.*  .************** ** *****

29. spacer 1.3|820416|30|NZ_CP023429|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KJ776579 (Clostridium botulinum strain KapchunkaB2 plasmid pKAPB2, complete sequence) position: , mismatch: 8, identity: 0.733

ctttgaaatttatcaataaaggttaaaaaa	CRISPR spacer
ttagaaaatttatcaataatggataaaatt	Protospacer
.*  .************** ** *****

30. spacer 1.3|820416|30|NZ_CP023429|PILER-CR,CRISPRCasFinder,CRT matches to NC_018653 (Clostridium botulinum B str. Eklund 17B (NRP) plasmid p17BNRP, complete sequence) position: , mismatch: 8, identity: 0.733

ctttgaaatttatcaataaaggttaaaaaa	CRISPR spacer
ttagaaaatttatcaataatggataaaatt	Protospacer
.*  .************** ** *****

31. spacer 1.3|820416|30|NZ_CP023429|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 8, identity: 0.733

ctttgaaatttatcaataaaggttaaaaaa	CRISPR spacer
aatccgaatttatcaataaaagttaaatat	Protospacer
  *. .**************.****** *

32. spacer 1.3|820416|30|NZ_CP023429|PILER-CR,CRISPRCasFinder,CRT matches to NC_010680 (Clostridium botulinum B str. Eklund 17B (NRP) plasmid pCLL, complete sequence) position: , mismatch: 8, identity: 0.733

ctttgaaatttatcaataaaggttaaaaaa	CRISPR spacer
ttagaaaatttatcaataatggataaaatt	Protospacer
.*  .************** ** *****

33. spacer 1.3|820416|30|NZ_CP023429|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011154 (Bacillus cereus strain CMCC P0011 plasmid pRML05, complete sequence) position: , mismatch: 8, identity: 0.733

ctttgaaatttatcaataaaggttaaaaaa	CRISPR spacer
aatccgaatttatcaataaaagttaaatat	Protospacer
  *. .**************.****** *

34. spacer 1.3|820416|30|NZ_CP023429|PILER-CR,CRISPRCasFinder,CRT matches to CP024913 (Cyanobacterium sp. HL-69 plasmid pCHL69-1, complete sequence) position: , mismatch: 8, identity: 0.733

ctttgaaatttatcaataaaggttaaaaaa	CRISPR spacer
ttaaataacttatcaataaaggctaaaaat	Protospacer
.*  . **.*************.******

35. spacer 1.3|820416|30|NZ_CP023429|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011152 (Bacillus cereus strain CMCC P0021 plasmid pRML04, complete sequence) position: , mismatch: 8, identity: 0.733

ctttgaaatttatcaataaaggttaaaaaa	CRISPR spacer
aatccgaatttatcaataaaagttaaatat	Protospacer
  *. .**************.****** *

36. spacer 1.3|820416|30|NZ_CP023429|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045607 (Bacillus cereus strain SB1 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.733

ctttgaaatttatcaataaaggttaaaaaa	CRISPR spacer
aatccgaatttatcaataaaagttaaatat	Protospacer
  *. .**************.****** *

37. spacer 1.5|820548|30|NZ_CP023429|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029455 (Bacillus cereus strain FORC087 plasmid pFORC087.1, complete sequence) position: , mismatch: 8, identity: 0.733

gcctcatcatctttgtatttccagctttga	CRISPR spacer
ttggcagcatctttgtatttccagctattt	Protospacer
 .  ** ******************* *

38. spacer 1.5|820548|30|NZ_CP023429|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007625 (Bacillus pseudomycoides strain 219298 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

gcctcatcatctttgtatttccagctttga	CRISPR spacer
ttggcagcatctttgtatttccagctattt	Protospacer
 .  ** ******************* *

39. spacer 1.5|820548|30|NZ_CP023429|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009650 (Bacillus pseudomycoides strain BTZ plasmid pBTZ_1, complete sequence) position: , mismatch: 8, identity: 0.733

gcctcatcatctttgtatttccagctttga	CRISPR spacer
ttggcagcatctttgtatttccagctattt	Protospacer
 .  ** ******************* *

40. spacer 1.5|820548|30|NZ_CP023429|PILER-CR,CRISPRCasFinder,CRT matches to CP016195 (Bacillus thuringiensis serovar coreanensis strain ST7 plasmid pST7-1, complete sequence) position: , mismatch: 8, identity: 0.733

gcctcatcatctttgtatttccagctttga	CRISPR spacer
ttggcagcatctttgtatttccagctattt	Protospacer
 .  ** ******************* *

41. spacer 1.5|820548|30|NZ_CP023429|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016590 (Bacillus thuringiensis strain KNU-07 plasmid pBTKNU07-02, complete sequence) position: , mismatch: 8, identity: 0.733

gcctcatcatctttgtatttccagctttga	CRISPR spacer
ttggcagcatctttgtatttccagctattt	Protospacer
 .  ** ******************* *

42. spacer 1.7|820680|30|NZ_CP023429|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018385 (Burkholderia pseudomallei strain 2008724860 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.733

gccgcgcgcaagctggcgacgtatgtgggt	CRISPR spacer
ttcgtgcgcaagctggcgacgtacatgatg	Protospacer
 .**.******************..**.

43. spacer 1.9|820812|30|NZ_CP023429|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040763 (Paracoccus sp. 2251 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.733

ttaccgatttggaacggcaatcaggtatct	CRISPR spacer
aacgggatttggaatggcaatccggtatca	Protospacer
     *********.******* ******

44. spacer 1.10|820878|30|NZ_CP023429|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041739 (Enterococcus faecalis EnGen0107 strain B594 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.733

aggctttctgaagaattgtttaaaccgatt	CRISPR spacer
aggctttctgaagatttttttaatttaaca	Protospacer
************** ** ***** ...*.

45. spacer 1.10|820878|30|NZ_CP023429|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048881 (Oceanospirillales bacterium S2-4-1H plasmid pC, complete sequence) position: , mismatch: 8, identity: 0.733

aggctttctgaagaattgtttaaaccgatt	CRISPR spacer
catccgcctgaagaagggtttaaaccgatt	Protospacer
 . *. .********  *************

46. spacer 1.10|820878|30|NZ_CP023429|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030046 (Enterococcus faecalis strain C54 plasmid pC54, complete sequence) position: , mismatch: 8, identity: 0.733

aggctttctgaagaattgtttaaaccgatt	CRISPR spacer
aggctttctgaagatttttttaatttaaca	Protospacer
************** ** ***** ...*.

47. spacer 1.10|820878|30|NZ_CP023429|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030043 (Enterococcus faecalis strain C25 plasmid pC25-1, complete sequence) position: , mismatch: 8, identity: 0.733

aggctttctgaagaattgtttaaaccgatt	CRISPR spacer
aggctttctgaagatttttttaatttaaca	Protospacer
************** ** ***** ...*.

48. spacer 2.7|2059061|33|NZ_CP023429|CRISPRCasFinder,CRT matches to MN035404 (Leviviridae sp. isolate H4_Bulk_46_scaffold_722 RNA-dependent RNA polymerase (H4Bulk46722_000001) and hypothetical protein (H4Bulk46722_000002) genes, complete cds; and hypothetical protein (H4Bulk46722_000003) gene, partial cds) position: , mismatch: 8, identity: 0.758

gttcgtcaggcaaatctgcctgttcggatttcg	CRISPR spacer
actcgtcaggcaaatctgcctgttcgggaagaa	Protospacer
..*************************.    .

49. spacer 2.15|2059595|33|NZ_CP023429|CRISPRCasFinder,CRT matches to MN035404 (Leviviridae sp. isolate H4_Bulk_46_scaffold_722 RNA-dependent RNA polymerase (H4Bulk46722_000001) and hypothetical protein (H4Bulk46722_000002) genes, complete cds; and hypothetical protein (H4Bulk46722_000003) gene, partial cds) position: , mismatch: 8, identity: 0.758

gttcgtcaggcaaatctgcctgttcggatttcg	CRISPR spacer
actcgtcaggcaaatctgcctgttcgggaagaa	Protospacer
..*************************.    .

50. spacer 2.30|2059061|34|NZ_CP023429|PILER-CR matches to MN034152 (Leviviridae sp. isolate H1_Rhizo_26_FD_scaffold_619 RNA-dependent RNA polymerase (H1Rhizo26FD619_000001) and hypothetical protein (H1Rhizo26FD619_000002) genes, complete cds; and hypothetical protein (H1Rhizo26FD619_000003) gene, partial cds) position: , mismatch: 8, identity: 0.765

agttcgtcaggcaaatctgcctgttcggatttcg	CRISPR spacer
gattcgtcaggcaaatttgcctgttcggaaagaa	Protospacer
..**************.************    .

51. spacer 2.38|2059602|34|NZ_CP023429|PILER-CR matches to MN034152 (Leviviridae sp. isolate H1_Rhizo_26_FD_scaffold_619 RNA-dependent RNA polymerase (H1Rhizo26FD619_000001) and hypothetical protein (H1Rhizo26FD619_000002) genes, complete cds; and hypothetical protein (H1Rhizo26FD619_000003) gene, partial cds) position: , mismatch: 8, identity: 0.765

agttcgtcaggcaaatctgcctgttcggatttcg	CRISPR spacer
gattcgtcaggcaaatttgcctgttcggaaagaa	Protospacer
..**************.************    .

52. spacer 1.6|820614|30|NZ_CP023429|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024314 (Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence) position: , mismatch: 9, identity: 0.7

aaaagtgttcgctacgctccgacaggcgat	CRISPR spacer
gctctttatcgctgcgctccgacaggcgag	Protospacer
.    *  *****.***************

53. spacer 1.10|820878|30|NZ_CP023429|PILER-CR,CRISPRCasFinder,CRT matches to MN694284 (Marine virus AFVG_250M474, complete genome) position: , mismatch: 9, identity: 0.7

aggctttctgaagaattgtttaaaccgatt	CRISPR spacer
ccactttctgaagcattgtttaaaggcaaa	Protospacer
  .********** **********   *

54. spacer 2.7|2059061|33|NZ_CP023429|CRISPRCasFinder,CRT matches to MN033022 (Leviviridae sp. isolate H4_Bulk_47_scaffold_457_e_2721 RNA-dependent RNA polymerase (H4Bulk47457e2721_000001) gene, partial cds; hypothetical protein (H4Bulk47457e2721_000002) gene, complete cds; and hypothetical protein (H4Bulk47457e2721_000003) gene, partial cds) position: , mismatch: 9, identity: 0.727

gttcgtcaggcaaatctgcctgttcggatttcg	CRISPR spacer
tctcgtcaggcaaatttgcctgttcgggaagaa	Protospacer
 .*************.***********.    .

55. spacer 2.15|2059595|33|NZ_CP023429|CRISPRCasFinder,CRT matches to MN033022 (Leviviridae sp. isolate H4_Bulk_47_scaffold_457_e_2721 RNA-dependent RNA polymerase (H4Bulk47457e2721_000001) gene, partial cds; hypothetical protein (H4Bulk47457e2721_000002) gene, complete cds; and hypothetical protein (H4Bulk47457e2721_000003) gene, partial cds) position: , mismatch: 9, identity: 0.727

gttcgtcaggcaaatctgcctgttcggatttcg	CRISPR spacer
tctcgtcaggcaaatttgcctgttcgggaagaa	Protospacer
 .*************.***********.    .

56. spacer 2.30|2059061|34|NZ_CP023429|PILER-CR matches to MN035404 (Leviviridae sp. isolate H4_Bulk_46_scaffold_722 RNA-dependent RNA polymerase (H4Bulk46722_000001) and hypothetical protein (H4Bulk46722_000002) genes, complete cds; and hypothetical protein (H4Bulk46722_000003) gene, partial cds) position: , mismatch: 9, identity: 0.735

agttcgtcaggcaaatctgcctgttcggatttcg	CRISPR spacer
gactcgtcaggcaaatctgcctgttcgggaagaa	Protospacer
...*************************.    .

57. spacer 2.38|2059602|34|NZ_CP023429|PILER-CR matches to MN035404 (Leviviridae sp. isolate H4_Bulk_46_scaffold_722 RNA-dependent RNA polymerase (H4Bulk46722_000001) and hypothetical protein (H4Bulk46722_000002) genes, complete cds; and hypothetical protein (H4Bulk46722_000003) gene, partial cds) position: , mismatch: 9, identity: 0.735

agttcgtcaggcaaatctgcctgttcggatttcg	CRISPR spacer
gactcgtcaggcaaatctgcctgttcgggaagaa	Protospacer
...*************************.    .

58. spacer 1.7|820680|30|NZ_CP023429|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022369 (Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence) position: , mismatch: 10, identity: 0.667

gccgcgcgcaagctggcgacgtatgtgggt	CRISPR spacer
gccgcgcgcaagctggtgacggtcaacaac	Protospacer
****************.****  ..  ...

59. spacer 1.7|820680|30|NZ_CP023429|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032349 (Azospirillum brasilense strain MTCC4039 plasmid p3, complete sequence) position: , mismatch: 10, identity: 0.667

gccgcgcgcaagctggcgacgtatgtgggt	CRISPR spacer
gccgcgcgcaagctggtgacggtcaacaac	Protospacer
****************.****  ..  ...

60. spacer 2.30|2059061|34|NZ_CP023429|PILER-CR matches to MN033022 (Leviviridae sp. isolate H4_Bulk_47_scaffold_457_e_2721 RNA-dependent RNA polymerase (H4Bulk47457e2721_000001) gene, partial cds; hypothetical protein (H4Bulk47457e2721_000002) gene, complete cds; and hypothetical protein (H4Bulk47457e2721_000003) gene, partial cds) position: , mismatch: 10, identity: 0.706

agttcgtcaggcaaatctgcctgttcggatttcg	CRISPR spacer
gtctcgtcaggcaaatttgcctgttcgggaagaa	Protospacer
. .*************.***********.    .

61. spacer 2.38|2059602|34|NZ_CP023429|PILER-CR matches to MN033022 (Leviviridae sp. isolate H4_Bulk_47_scaffold_457_e_2721 RNA-dependent RNA polymerase (H4Bulk47457e2721_000001) gene, partial cds; hypothetical protein (H4Bulk47457e2721_000002) gene, complete cds; and hypothetical protein (H4Bulk47457e2721_000003) gene, partial cds) position: , mismatch: 10, identity: 0.706

agttcgtcaggcaaatctgcctgttcggatttcg	CRISPR spacer
gtctcgtcaggcaaatttgcctgttcgggaagaa	Protospacer
. .*************.***********.    .

62. spacer 2.16|2059660|34|NZ_CP023429|CRISPRCasFinder,CRT matches to NC_018265 (Melissococcus plutonius DAT561 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.676

gtaaatacatttttgagatttacaattatgtaaa	CRISPR spacer
ttggttacatttttgatatttataattatactgt	Protospacer
 *.. *********** *****.******.. .

63. spacer 2.16|2059660|34|NZ_CP023429|CRISPRCasFinder,CRT matches to NZ_CP006684 (Melissococcus plutonius S1 plasmid pMEPL_178, complete sequence) position: , mismatch: 11, identity: 0.676

gtaaatacatttttgagatttacaattatgtaaa	CRISPR spacer
ttggttacatttttgatatttataattatactgt	Protospacer
 *.. *********** *****.******.. .

64. spacer 2.16|2059660|34|NZ_CP023429|CRISPRCasFinder,CRT matches to NZ_AP021886 (Melissococcus plutonius strain DAT1033 plasmid pMP1, complete sequence) position: , mismatch: 11, identity: 0.676

gtaaatacatttttgagatttacaattatgtaaa	CRISPR spacer
ttggttacatttttgatatttataattatactgt	Protospacer
 *.. *********** *****.******.. .

65. spacer 2.16|2059660|34|NZ_CP023429|CRISPRCasFinder,CRT matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 11, identity: 0.676

gtaaatacatttttgagatttacaattatgtaaa	CRISPR spacer
ataaatacattttttatatttacaacatcctttg	Protospacer
.************* * ********.  . *  .

66. spacer 2.16|2059660|34|NZ_CP023429|CRISPRCasFinder,CRT matches to NZ_CP039706 (Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence) position: , mismatch: 11, identity: 0.676

gtaaatacatttttgagatttacaattatgtaaa	CRISPR spacer
ataaatacattttttatatttacaacatcctttg	Protospacer
.************* * ********.  . *  .

67. spacer 2.16|2059660|34|NZ_CP023429|CRISPRCasFinder,CRT matches to NZ_CP033246 (Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence) position: , mismatch: 11, identity: 0.676

gtaaatacatttttgagatttacaattatgtaaa	CRISPR spacer
ataaatacattttttatatttacaacatcctttg	Protospacer
.************* * ********.  . *  .

68. spacer 2.16|2059660|34|NZ_CP023429|CRISPRCasFinder,CRT matches to NZ_CP033248 (Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence) position: , mismatch: 11, identity: 0.676

gtaaatacatttttgagatttacaattatgtaaa	CRISPR spacer
ataaatacattttttatatttacaacatcctttg	Protospacer
.************* * ********.  . *  .

69. spacer 2.16|2059660|34|NZ_CP023429|CRISPRCasFinder,CRT matches to NZ_AP018525 (Melissococcus plutonius strain DAT585 plasmid pMP1, complete sequence) position: , mismatch: 11, identity: 0.676

gtaaatacatttttgagatttacaattatgtaaa	CRISPR spacer
ttggttacatttttgatatttataattatactgt	Protospacer
 *.. *********** *****.******.. .

70. spacer 2.16|2059660|34|NZ_CP023429|CRISPRCasFinder,CRT matches to NZ_CP013238 (Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence) position: , mismatch: 11, identity: 0.676

gtaaatacatttttgagatttacaattatgtaaa	CRISPR spacer
ataaatacattttttatatttacaacatcctttg	Protospacer
.************* * ********.  . *  .

71. spacer 2.16|2059660|34|NZ_CP023429|CRISPRCasFinder,CRT matches to NZ_AP019717 (Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence) position: , mismatch: 11, identity: 0.676

gtaaatacatttttgagatttacaattatgtaaa	CRISPR spacer
ataaatacattttttatatttacaacatcctttg	Protospacer
.************* * ********.  . *  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1012583 : 1060321

Burkholderia_phage(28.95%)

plate,tail,head,integrase,transposase

attL 1028665:1028681|attR 1060829:1060845

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096295069.1\|1012583_1013024_-	phage virion morphogenesis protein	A0A076FSU1	Pseudomonas_phage	7.3e-22	44.0
WP_096295070.1\|1013210_1014116_-\|head	phage head morphogenesis protein	A0A0M4UTA3	Ralstonia_phage	1.8e-62	46.9
WP_096295071.1\|1014112_1015618_-	DUF935 family protein	Q6QIC0	Burkholderia_phage	4.6e-108	43.5
WP_096295072.1\|1015705_1015915_+	hypothetical protein	NA	NA	NA	NA
WP_096295073.1\|1015897_1017385_-	hypothetical protein	Q6QIC1	Burkholderia_phage	2.1e-198	67.8
WP_096295074.1\|1018017_1018335_-	hypothetical protein	A0A2H4JGU5	uncultured_Caudovirales_phage	1.1e-27	64.9
WP_096295075.1\|1018331_1018652_-	hypothetical protein	Q6QIC4	Burkholderia_phage	4.0e-09	38.1
WP_096295076.1\|1018654_1018867_-	conjugal transfer protein TraR	A0A0M3LS11	Mannheimia_phage	1.2e-09	47.7
WP_096296102.1\|1018859_1019105_-	hypothetical protein	NA	NA	NA	NA
WP_096295077.1\|1019058_1019457_-	hypothetical protein	NA	NA	NA	NA
WP_096296103.1\|1019440_1019695_-	hypothetical protein	A0A0M4UKB4	Ralstonia_phage	4.7e-05	43.5
WP_096295078.1\|1019694_1019877_-	hypothetical protein	NA	NA	NA	NA
WP_096295079.1\|1019880_1020384_-	glycoside hydrolase family 108 protein	A0A0M3LSH2	Mannheimia_phage	5.6e-50	60.0
WP_096295080.1\|1020470_1020953_-	hypothetical protein	NA	NA	NA	NA
WP_096295081.1\|1020949_1021918_-	hypothetical protein	NA	NA	NA	NA
WP_096295082.1\|1021947_1022571_-	hypothetical protein	NA	NA	NA	NA
WP_096295083.1\|1022567_1023215_-	helix-turn-helix transcriptional regulator	A0A2I7S9A5	Vibrio_phage	2.4e-29	36.3
WP_096295084.1\|1023356_1023560_+	DNA-binding protein	Q5ZQZ9	Pseudomonas_phage	2.8e-08	48.2
WP_096295085.1\|1023556_1023841_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_096295086.1\|1023875_1024733_+	DUF3102 domain-containing protein	A4JWN3	Burkholderia_virus	4.4e-47	40.1
WP_096295087.1\|1024734_1026516_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	Q6QIE0	Burkholderia_phage	1.2e-150	48.5
WP_096295088.1\|1026556_1027699_+	AAA family ATPase	A4JWN1	Burkholderia_virus	3.3e-106	52.5
WP_096295089.1\|1027698_1027902_+	hypothetical protein	NA	NA	NA	NA
WP_096295090.1\|1027898_1028111_+	hypothetical protein	NA	NA	NA	NA
WP_096295091.1\|1028112_1028361_+	hypothetical protein	NA	NA	NA	NA
WP_096295092.1\|1028357_1028876_+	hypothetical protein	NA	NA	NA	NA
1028665:1028681	attL	NA	NA	NA	NA
WP_096295093.1\|1028859_1029327_+	hypothetical protein	NA	NA	NA	NA
WP_096295094.1\|1029292_1029925_+	DUF3164 family protein	A0A0M3LQ92	Mannheimia_phage	2.0e-57	55.9
WP_096295095.1\|1030127_1030403_+	HU family DNA-binding protein	Q2A099	Sodalis_phage	2.9e-16	52.8
WP_096295096.1\|1030549_1031026_+	regulatory protein GemA	A4JWM5	Burkholderia_virus	4.7e-22	46.9
WP_096295097.1\|1031018_1031360_+	transcriptional regulator	Q6QIE8	Burkholderia_phage	1.9e-17	42.1
WP_096295098.1\|1031573_1032686_+	2-oxoacid:acceptor oxidoreductase	Q6QIB7	Burkholderia_phage	1.1e-69	41.8
WP_096295099.1\|1032709_1033648_+	hypothetical protein	A4JWK0	Burkholderia_virus	1.9e-43	37.3
WP_096295100.1\|1033713_1034049_+	DUF2190 family protein	NA	NA	NA	NA
WP_096295101.1\|1034051_1034315_+	hypothetical protein	NA	NA	NA	NA
WP_096295102.1\|1034314_1034761_+	DUF1320 domain-containing protein	A0A2D1GNP0	Pseudomonas_phage	7.2e-09	31.2
WP_096295103.1\|1034760_1035258_+	hypothetical protein	Q6QIB2	Burkholderia_phage	2.9e-19	33.3
WP_096295104.1\|1035261_1036662_+\|tail	phage tail protein	A4JWK5	Burkholderia_virus	1.2e-105	46.7
WP_096295105.1\|1036673_1037192_+\|tail	phage major tail tube protein	A4JWK6	Burkholderia_virus	5.2e-43	49.7
WP_096295106.1\|1037301_1037586_+\|tail	phage tail assembly protein	Q6QIA8	Burkholderia_phage	1.4e-10	51.9
WP_096295107.1\|1037769_1038048_-	hypothetical protein	NA	NA	NA	NA
WP_096295108.1\|1038098_1040792_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	4.7e-18	22.6
WP_096295109.1\|1040791_1041688_+\|tail	phage tail protein	Q6QIA4	Burkholderia_phage	4.4e-21	38.0
WP_096295110.1\|1041684_1041912_+	hypothetical protein	R9U1D8	Rhizobium_phage	1.9e-05	36.1
WP_096295111.1\|1041911_1043015_+	hypothetical protein	A4JWL3	Burkholderia_virus	7.4e-71	43.2
WP_096296104.1\|1043028_1043577_+\|plate	phage baseplate assembly protein V	R9U0U6	Rhizobium_phage	6.6e-12	34.5
WP_096295112.1\|1043655_1044033_+\|plate	phage baseplate protein	Q6QIA0	Burkholderia_phage	5.1e-16	43.6
WP_096295113.1\|1044023_1045166_+\|plate	baseplate J/gp47 family protein	Q6QI99	Burkholderia_phage	1.2e-60	41.1
WP_096295114.1\|1046428_1046944_+	hypothetical protein	I6YY04	Aeromonas_phage	1.5e-05	38.2
WP_096295115.1\|1047024_1047834_+\|tail	tail fiber protein	A0A1W6JT73	Escherichia_phage	2.6e-33	45.1
WP_096295116.1\|1047866_1048613_+	hypothetical protein	K7PMC4	Enterobacterial_phage	7.3e-06	35.9
WP_096295117.1\|1048686_1049115_+	hypothetical protein	A0A1L7N100	Ralstonia_phage	9.3e-30	46.9
WP_157742713.1\|1049108_1049438_+	hypothetical protein	NA	NA	NA	NA
WP_096295119.1\|1049437_1052581_+	hypothetical protein	NA	NA	NA	NA
WP_089036638.1\|1052762_1052960_+	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_096296105.1\|1053087_1053825_+	DNA adenine methylase	Q5ZQW7	Pseudomonas_phage	3.3e-75	53.3
WP_096295120.1\|1053943_1057123_-	filamentous hemagglutinin N-terminal domain-containing protein	A0A0R6PJK4	Moraxella_phage	1.1e-42	36.9
WP_157742797.1\|1057193_1058921_-	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_096295122.1\|1059299_1059746_+	hypothetical protein	NA	NA	NA	NA
WP_096295123.1\|1059859_1060321_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
1060829:1060845	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1610466 : 1659136

Bacillus_phage(14.29%)

protease,integrase,transposase

attL 1624170:1624187|attR 1669853:1669870

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096295489.1\|1610466_1612764_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	2.9e-170	43.7
WP_096295490.1\|1612767_1613079_-\|protease	ATP-dependent Clp protease adapter ClpS	NA	NA	NA	NA
WP_016687461.1\|1613384_1613588_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	1.2e-22	80.3
WP_096295491.1\|1613854_1614076_+	DUF1653 domain-containing protein	M5ABZ3	Bacillus_phage	3.0e-08	48.4
WP_096295492.1\|1614181_1614628_+	SsrA-binding protein SmpB	NA	NA	NA	NA
WP_096295493.1\|1614836_1615184_+	hypothetical protein	NA	NA	NA	NA
WP_157742753.1\|1615230_1615434_-	hypothetical protein	NA	NA	NA	NA
WP_096295494.1\|1615705_1617271_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	3.4e-21	31.7
WP_096295495.1\|1617601_1618342_+	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_096296144.1\|1618462_1619497_-	alcohol dehydrogenase AdhP	A0A2K9L339	Tupanvirus	5.9e-30	25.7
WP_096295496.1\|1619968_1621450_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_095502622.1\|1621600_1621936_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
WP_096296145.1\|1622119_1624129_-	DNA polymerase III subunit gamma/tau	A0A1L2BWV7	Bacteriophage	5.7e-45	40.0
1624170:1624187	attL	NA	NA	NA	NA
WP_096295497.1\|1624304_1625390_-	lytic murein transglycosylase B	NA	NA	NA	NA
WP_096295498.1\|1625701_1626154_-	50S ribosomal protein L9	NA	NA	NA	NA
WP_054599043.1\|1626168_1626399_-	30S ribosomal protein S18	NA	NA	NA	NA
WP_095502627.1\|1626703_1627075_-	30S ribosomal protein S6	NA	NA	NA	NA
WP_096295499.1\|1629544_1630414_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA
WP_096295500.1\|1632032_1632725_+	phosphate regulon transcriptional regulatory protein PhoB	NA	NA	NA	NA
WP_096296146.1\|1632717_1633272_+	DUF3329 domain-containing protein	NA	NA	NA	NA
WP_096295502.1\|1633912_1634347_-	organic hydroperoxide resistance protein	NA	NA	NA	NA
WP_096295503.1\|1635198_1636731_-	aspartate aminotransferase family protein	NA	NA	NA	NA
WP_096295504.1\|1636730_1638104_-	diaminobutyrate--2-oxoglutarate transaminase	A0A1V0SKB7	Klosneuvirus	1.0e-21	24.9
WP_157742754.1\|1638405_1638582_-	hypothetical protein	NA	NA	NA	NA
WP_157742755.1\|1638606_1638774_-	hypothetical protein	NA	NA	NA	NA
WP_096295505.1\|1639445_1640834_+	class II fumarate hydratase	NA	NA	NA	NA
WP_096295506.1\|1640918_1642700_-	anaerobic ribonucleoside-triphosphate reductase	A0A060AN10	Cronobacter_phage	1.8e-204	58.9
WP_096295507.1\|1642739_1643270_-	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	NA	NA	NA
WP_096295508.1\|1643471_1644863_-	purine permease	H9YQ34	environmental_Halophage	1.9e-23	47.1
WP_096295509.1\|1646253_1647396_+	outer membrane protein assembly factor BamC	NA	NA	NA	NA
WP_096295510.1\|1647657_1647903_+	hypothetical protein	NA	NA	NA	NA
WP_096295511.1\|1647895_1648492_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	E9KZD1	Cassava_brown_streak_virus	2.6e-06	39.7
WP_157742801.1\|1648677_1649025_+	DUF1705 domain-containing protein	NA	NA	NA	NA
WP_096295512.1\|1651948_1652338_+	RidA family protein	NA	NA	NA	NA
WP_096295514.1\|1652790_1653624_+	symmetrical bis(5'-nucleosyl)-tetraphosphatase	V9QL63	Rhizobium_phage	2.7e-09	30.1
WP_096295515.1\|1653952_1655122_+	nitronate monooxygenase	NA	NA	NA	NA
WP_096295516.1\|1655298_1656483_+	succinyldiaminopimelate transaminase	NA	NA	NA	NA
WP_096295517.1\|1656631_1657411_+	peroxide stress protein YaaA	NA	NA	NA	NA
WP_096296147.1\|1657930_1658311_+\|transposase	transposase	NA	NA	NA	NA
WP_157742756.1\|1658325_1658721_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.9e-13	38.1
WP_096295519.1\|1658618_1658894_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A2I6AZV9	Macacine_betaherpesvirus	4.3e-20	58.8
WP_096295520.1\|1658869_1659136_+\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	4.4e-22	60.5
1669853:1669870	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1697040 : 1716992

Burkholderia_phage(33.33%)

head,tail,plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096295543.1\|1697040_1697493_-\|transposase	transposase	NA	NA	NA	NA
WP_089036639.1\|1698382_1699228_-	DNA cytosine methyltransferase	A0A1P8DJM9	Virus_Rctr41k	2.2e-43	53.1
WP_089036638.1\|1699196_1699394_-	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_157742759.1\|1699568_1700555_-	hypothetical protein	NA	NA	NA	NA
WP_157742713.1\|1701144_1701474_-	hypothetical protein	NA	NA	NA	NA
WP_096295117.1\|1701467_1701896_-	hypothetical protein	A0A1L7N100	Ralstonia_phage	9.3e-30	46.9
WP_096295115.1\|1702747_1703557_-\|tail	tail fiber protein	A0A1W6JT73	Escherichia_phage	2.6e-33	45.1
WP_157742760.1\|1703637_1704201_-	hypothetical protein	I6YY04	Aeromonas_phage	1.6e-05	38.2
WP_096295113.1\|1705415_1706558_-\|plate	baseplate J/gp47 family protein	Q6QI99	Burkholderia_phage	1.2e-60	41.1
WP_096295112.1\|1706548_1706926_-\|plate	phage baseplate protein	Q6QIA0	Burkholderia_phage	5.1e-16	43.6
WP_096296104.1\|1707004_1707553_-\|plate	phage baseplate assembly protein V	R9U0U6	Rhizobium_phage	6.6e-12	34.5
WP_096295111.1\|1707566_1708670_-	hypothetical protein	A4JWL3	Burkholderia_virus	7.4e-71	43.2
WP_096295110.1\|1708669_1708897_-	hypothetical protein	R9U1D8	Rhizobium_phage	1.9e-05	36.1
WP_096295109.1\|1708893_1709790_-\|tail	phage tail protein	Q6QIA4	Burkholderia_phage	4.4e-21	38.0
WP_096295545.1\|1709789_1710314_-	hypothetical protein	E5FFG5	Burkholderia_phage	1.0e-09	38.7
WP_096295546.1\|1712409_1712682_+	hypothetical protein	NA	NA	NA	NA
WP_096296149.1\|1712678_1712852_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_096295547.1\|1712844_1713150_-\|tail	phage tail assembly protein	A4JWK7	Burkholderia_virus	1.5e-10	47.1
WP_096295548.1\|1713259_1713778_-\|tail	phage major tail tube protein	A4JWK6	Burkholderia_virus	1.2e-42	49.7
WP_096295550.1\|1714584_1716090_+	DUF935 family protein	Q6QIC0	Burkholderia_phage	4.6e-108	43.5
WP_096295070.1\|1716086_1716992_+\|head	phage head morphogenesis protein	A0A0M4UTA3	Ralstonia_phage	1.8e-62	46.9

DBSCAN-SWA_4

1933292 : 1994999

uncultured_Mediterranean_phage(22.22%)

bacteriocin,integrase,transposase

attL 1921135:1921154|attR 2000697:2000716

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1921135:1921154	attL	NA	NA	NA	NA
WP_157742768.1\|1933292_1933913_-\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_096295680.1\|1934156_1935449_-	MFS transporter	NA	NA	NA	NA
WP_096295681.1\|1935901_1936837_-	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	2.5e-43	36.8
WP_096295682.1\|1936840_1938703_-	protein translocase subunit SecD	NA	NA	NA	NA
WP_096295683.1\|1938774_1939038_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	1.6e-11	48.2
WP_096295685.1\|1941260_1941785_+	hypothetical protein	NA	NA	NA	NA
WP_096295686.1\|1942107_1942887_+	hypothetical protein	NA	NA	NA	NA
WP_157742769.1\|1944449_1944605_+	hypothetical protein	NA	NA	NA	NA
WP_157742770.1\|1944963_1945179_-	hypothetical protein	NA	NA	NA	NA
WP_157742803.1\|1946992_1947910_+	calcium-binding protein	NA	NA	NA	NA
WP_096295688.1\|1949276_1949690_-	lactoylglutathione lyase	NA	NA	NA	NA
WP_096295689.1\|1949927_1951469_+	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	NA	NA	NA	NA
WP_096295690.1\|1951480_1952866_+	Re/Si-specific NAD(P)(+) transhydrogenase subunit beta	NA	NA	NA	NA
WP_096295691.1\|1953008_1953800_+	formate/nitrite transporter family protein	NA	NA	NA	NA
WP_096295692.1\|1953891_1954566_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA
WP_096295693.1\|1958900_1959428_-	thiol reductase thioredoxin	NA	NA	NA	NA
WP_096295694.1\|1959629_1960769_-	class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA
WP_096295695.1\|1960938_1961364_-	hypothetical protein	NA	NA	NA	NA
WP_096295696.1\|1961366_1962173_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_096295697.1\|1962292_1962670_-	holo-ACP synthase	NA	NA	NA	NA
WP_096295698.1\|1962729_1963461_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_096296169.1\|1963544_1964333_-	DNA repair protein RecO	NA	NA	NA	NA
WP_096295699.1\|1964458_1965838_-	TolC family protein	NA	NA	NA	NA
WP_096295700.1\|1967930_1969109_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_096295701.1\|1969445_1969919_+	type IV pilin protein	NA	NA	NA	NA
WP_096295702.1\|1970001_1970457_+	type IV pilin protein	NA	NA	NA	NA
WP_096295703.1\|1971694_1972777_-	prephenate dehydratase	NA	NA	NA	NA
WP_096295704.1\|1972937_1974173_-	multidrug effflux MFS transporter	S4TR35	Salmonella_phage	5.4e-22	24.7
WP_096295705.1\|1974977_1975232_-\|bacteriocin	bacteriocin	NA	NA	NA	NA
WP_096295706.1\|1975589_1977119_+	DUF853 family protein	A0A248XCZ8	Klebsiella_phage	2.9e-81	44.6
WP_096295707.1\|1978069_1980049_-	type IIA DNA topoisomerase subunit B	G3M9Z3	Bacillus_virus	2.0e-95	35.0
WP_096295708.1\|1980284_1980473_+	hypothetical protein	NA	NA	NA	NA
WP_096296171.1\|1980628_1981153_-	RNA pyrophosphohydrolase	NA	NA	NA	NA
WP_096295709.1\|1981489_1982638_+	polyamine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_096295710.1\|1982888_1984550_-	electron transfer flavoprotein-ubiquinone oxidoreductase	NA	NA	NA	NA
WP_096295711.1\|1984688_1985594_-	zinc ABC transporter solute-binding protein	NA	NA	NA	NA
WP_096295712.1\|1985676_1986552_-	metal ABC transporter permease	NA	NA	NA	NA
WP_096295713.1\|1986765_1987491_-	metal ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.2e-08	24.0
WP_096295714.1\|1987759_1988062_+	DUF2288 domain-containing protein	NA	NA	NA	NA
WP_096295715.1\|1988260_1989448_+	putative hydroxymethylpyrimidine transporter CytX	NA	NA	NA	NA
WP_096295716.1\|1989761_1991144_-	sodium:alanine symporter family protein	NA	NA	NA	NA
WP_096295717.1\|1991412_1991781_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA
WP_096296172.1\|1991889_1992378_-	phosphatidylglycerophosphatase A	NA	NA	NA	NA
WP_096295718.1\|1992370_1993336_-	thiamine-phosphate kinase	NA	NA	NA	NA
WP_096296147.1\|1993793_1994174_+\|transposase	transposase	NA	NA	NA	NA
WP_157742756.1\|1994188_1994584_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.9e-13	38.1
WP_096295519.1\|1994481_1994757_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A2I6AZV9	Macacine_betaherpesvirus	4.3e-20	58.8
WP_096295520.1\|1994732_1994999_+\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	4.4e-22	60.5
2000697:2000716	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP023429

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection