CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP023449	Rhizorhabdus dicambivorans strain Ndbn-20 chromosome, complete genome	0 crisprs	csa3,cas3,WYL,RT,DEDDh,DinG	0
NZ_CP023453	Rhizorhabdus dicambivorans strain Ndbn-20 plasmid p4, complete sequence	0 crisprs	NA	0
NZ_CP023451	Rhizorhabdus dicambivorans strain Ndbn-20 plasmid p2, complete sequence	0 crisprs	csa3	19
NZ_CP023450	Rhizorhabdus dicambivorans strain Ndbn-20 plasmid p1, complete sequence	0 crisprs	csa3,RT	1
NZ_CP023452	Rhizorhabdus dicambivorans strain Ndbn-20 plasmid p3, complete sequence	0 crisprs	NA	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 9450

Salinibacter_virus(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_030092781.1\|5391_6237_-	toprim domain-containing protein	A0A2I6UGE7	Salinibacter_virus	4.1e-05	36.4
WP_062787893.1\|8247_9450_+	AAA family ATPase	A0A2I6B2X3	Macacine_betaherpesvirus	3.3e-40	35.0

DBSCAN-SWA_2

16859 : 21077

Ostreococcus_tauri_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009824041.1\|16859_18473_-	ubiquinone biosynthesis protein	A9YVW0	Ostreococcus_tauri_virus	2.1e-26	26.6
WP_009824040.1\|18465_18960_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_031291247.1\|19182_20292_+	ABC transporter permease	NA	NA	NA	NA
WP_009824037.1\|20288_21077_+	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	1.8e-18	31.2

DBSCAN-SWA_3

29593 : 37341

Salmonella_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_021224430.1\|29593_32560_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	5.8e-203	40.0
WP_009824028.1\|32712_33591_-	AAA family ATPase	B5TA81	Burkholderia_phage	1.0e-06	25.4
WP_019052494.1\|34375_35668_+\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	2.0e-11	35.4
WP_009824027.1\|36768_37341_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	9.5e-38	48.1

DBSCAN-SWA_4

50718 : 71581

Salmonella_phage(28.57%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004212886.1\|50718_53220_+	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	7.7e-124	41.0
WP_004212890.1\|53216_53966_+	HAD-IIB family hydrolase	NA	NA	NA	NA
WP_014072601.1\|54846_57816_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	4.1e-209	39.9
WP_004213247.1\|57907_59326_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	2.4e-42	28.7
WP_004213249.1\|59363_59693_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA
WP_014072602.1\|59705_60101_-	mercury transporter MerT	NA	NA	NA	NA
WP_014072603.1\|60177_60600_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_004213255.1\|60770_61331_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	4.6e-45	79.3
WP_008832583.1\|63791_64412_+	recombinase family protein	E5FFF9	Burkholderia_phage	1.6e-38	49.7
WP_007686150.1\|64408_64939_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_021247421.1\|65005_66301_-	hypothetical protein	NA	NA	NA	NA
WP_037462736.1\|66549_66954_-	copper-binding protein	NA	NA	NA	NA
WP_066969660.1\|66950_70094_-	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	2.5e-55	20.0
WP_021243085.1\|70090_71581_-	efflux RND transporter periplasmic adaptor subunit	S5VL44	Leptospira_phage	1.3e-06	29.5

DBSCAN-SWA_5

75439 : 77365

Synechococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_021243091.1\|75439_77365_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	I3ULH6	Synechococcus_phage	2.9e-06	44.3

DBSCAN-SWA_6

84770 : 85796

Moumouvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007683342.1\|84770_85796_+	alcohol dehydrogenase AdhP	M1PHA2	Moumouvirus	2.8e-32	28.4

DBSCAN-SWA_7

92260 : 92989

Lactococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025549137.1\|92260_92989_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	1.8e-33	38.6

DBSCAN-SWA_8

106253 : 115137

uncultured_virus(20.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004212717.1\|106253_108515_+	cadmium-translocating P-type ATPase	A0A218MNH6	uncultured_virus	2.3e-71	29.5
WP_004212718.1\|108511_108721_+	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA
WP_004212720.1\|108983_109262_+\|transposase	transposase	NA	NA	NA	NA
WP_141396759.1\|109258_109558_+	hypothetical protein	NA	NA	NA	NA
WP_096367681.1\|109605_111126_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	3.6e-15	29.2
WP_066970386.1\|111137_111938_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	1.7e-37	36.0
WP_019052494.1\|112629_113922_-\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	2.0e-11	35.4
WP_004212722.1\|114729_115137_+	single-stranded DNA-binding protein	A0A2I6UG15	Salinibacter_virus	5.6e-16	41.5

DBSCAN-SWA_9

120054 : 122123

Catovirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_066701154.1\|120054_121590_-	PAS domain S-box protein	A0A1V0S925	Catovirus	5.4e-11	34.7
WP_004212732.1\|121649_122123_-	DUF305 domain-containing protein	A0A1V0SJW0	Klosneuvirus	7.9e-06	34.3

DBSCAN-SWA_10

128942 : 131300

uncultured_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_021245221.1\|128942_131300_+	cadmium-translocating P-type ATPase	A0A218MNH6	uncultured_virus	7.1e-79	34.1

DBSCAN-SWA_11

147887 : 150307

Cronobacter_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_062787958.1\|147887_148772_-	ribose-phosphate pyrophosphokinase	M1F2H0	Cronobacter_phage	1.9e-05	23.8
WP_066701149.1\|148768_150307_-	thymidine phosphorylase family protein	A0A0H3UZD4	Geobacillus_virus	8.3e-20	24.2

DBSCAN-SWA_12

154462 : 160310

Stx2-converting_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_019052499.1\|154462_154810_+\|transposase	transposase	A0A1B0YZU7	Pseudomonas_phage	9.9e-06	40.5
WP_019052498.1\|154806_155148_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	8.2e-29	52.4
WP_019052497.1\|155219_156884_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.5e-110	44.3
WP_019052496.1\|156901_157147_+	hypothetical protein	NA	NA	NA	NA
WP_066701147.1\|157171_157480_-	hypothetical protein	NA	NA	NA	NA
WP_066701146.1\|157634_157904_+	hypothetical protein	NA	NA	NA	NA
WP_066701145.1\|157919_159218_-	hypothetical protein	NA	NA	NA	NA
WP_162849117.1\|159437_160310_+	transglycosylase SLT domain-containing protein	A0A0H3V0Q1	Geobacillus_virus	9.8e-18	48.3

DBSCAN-SWA_13

182445 : 183861

Ochrobactrum_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_066701125.1\|182445_183861_-	chromate efflux transporter	A0A219VHC2	Ochrobactrum_phage	2.0e-36	73.3

DBSCAN-SWA_14

189435 : 192672

Leptospira_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_066701118.1\|189435_192672_+	CusA/CzcA family heavy metal efflux RND transporter	S5VTK5	Leptospira_phage	6.8e-56	22.0

DBSCAN-SWA_15

196050 : 199320

Streptomyces_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_066701113.1\|196050_199320_+	error-prone DNA polymerase	A0A1C9LWZ5	Streptomyces_phage	1.7e-86	28.5

DBSCAN-SWA_16

208519 : 210046

Clostridioides_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_066703424.1\|208519_210046_-	hypothetical protein	A0A2R2ZGJ6	Clostridioides_phage	1.4e-16	36.0

DBSCAN-SWA_17

231773 : 233071

Rhizobium_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_030090586.1\|231773_232124_-	DUF3768 domain-containing protein	L7TKV8	Rhizobium_phage	1.8e-07	37.8
WP_062787876.1\|232120_233071_-	hypothetical protein	G9BWC3	Planktothrix_phage	9.3e-22	31.5

DBSCAN-SWA_18

244855 : 248820

Caulobacter_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_066969656.1\|244855_245140_-	hypothetical protein	K4JTS1	Caulobacter_virus	3.5e-09	44.9
WP_066970392.1\|245488_246553_-	ACR3 family arsenite efflux transporter	NA	NA	NA	NA
WP_096367739.1\|246549_247077_-	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	7.4e-29	43.9
WP_066970295.1\|247073_247430_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_066970291.1\|247429_247882_-	VOC family protein	NA	NA	NA	NA
WP_066970288.1\|247956_248820_-	DUF1738 domain-containing protein	A0A1V0EEV1	Caulobacter_phage	1.1e-42	39.9

DBSCAN-SWA_19

254439 : 255189

Caulobacter_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096367886.1\|254439_255189_-	DUF1738 domain-containing protein	A0A1V0EEV1	Caulobacter_phage	8.3e-50	52.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP023450

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

70272 : 78979

uncultured_Caudovirales_phage(71.43%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096367739.1\|70272_70800_+	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	7.4e-29	43.9
WP_066970392.1\|70796_71861_+	ACR3 family arsenite efflux transporter	NA	NA	NA	NA
WP_096367884.1\|72209_72479_+	antirestriction protein ArdC	NA	NA	NA	NA
WP_013849891.1\|72531_72870_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_007688074.1\|72882_73419_+	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	2.6e-21	36.9
WP_007688073.1\|73415_73856_+	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	7.0e-49	69.3
WP_007688072.1\|73852_74920_+	ACR3 family arsenite efflux transporter	NA	NA	NA	NA
WP_007688071.1\|74916_75348_+	GNAT family N-acetyltransferase	A0A2H4J155	uncultured_Caudovirales_phage	1.8e-20	44.7
WP_066970268.1\|75347_76088_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	1.6e-74	71.1
WP_031291054.1\|76437_77379_+	DUF2493 domain-containing protein	A0A0D4DBJ6	Vibrio_phage	4.6e-05	35.3
WP_031291055.1\|77492_78164_+	hypothetical protein	NA	NA	NA	NA
WP_007688067.1\|78571_78979_+	single-stranded DNA-binding protein	A0A0M3LP44	Mannheimia_phage	1.2e-13	35.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP023451

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP023450

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection