CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_AP014936	Sulfurifustis variabilis strain skN76	6 crisprs	RT,csa3,DEDDh,cas3,DinG,cas6,Cas9_archaeal	0	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_AP014936_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP014936_1

772501-772609

Orphan

Consensus_repeat	Method
TCGCGGGAGAAGGAATGAGGATGAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP014936_1

>merge|NZ_AP014936|1|772501-772609|CRISPRCasFinder
TCGCGGGAGAAGGAATGAGGATGAGGGCTCCCTTCTGCGGTTTCGCGCGTGCTTTCCGCGCCTCGGCTCGCCTCCTTCTTCCCTTCGCGGAAGAAGGAATGAGGATGAG

>NZ_AP014936|1|1|772501-772609|CRISPRCasFinder
TCGCGGGAGAAGGAATGAGGATGAG	GGCTCCCTTCTGCGGTTTCGCGCGTGCTTTCCGCGCCTCGGCTCGCCTCCTTCTTCCCT
TCGCGGAAGAAGGAATGAGGATGAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014936.1\|WP_148665364.1\|770003_771110_+\|DUF1207-domain-containing-protein	unknown	unknown	gnl\|CDD\|310969
NZ_AP014936.1\|WP_096459026.1\|760617_761625_+\|integron-integrase	unknown	unknown	gnl\|CDD\|131303
NZ_AP014936.1\|WP_169923954.1\|759937_760249_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014936.1\|WP_169923955.1\|779989_780244_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014936.1\|WP_148665362.1\|757695_757989_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014936.1\|WP_148665365.1\|777436_778417_-\|sodium:calcium-antiporter	unknown	unknown	gnl\|CDD\|223604
NZ_AP014936.1\|WP_096459053.1\|780746_781703_-\|IS1595-family-transposase	unknown	unknown	gnl\|CDD\|372298
NZ_AP014936.1\|WP_148665366.1\|778425_778776_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014936.1\|WP_096459029.1\|761647_766789_+\|PHP-domain-containing-protein	unknown	unknown	gnl\|CDD\|235553
NZ_AP014936.1\|WP_096459020.1\|758063_759154_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|372671
NZ_AP014936.1\|WP_096462814.1\|782701_783145_+\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239516
NZ_AP014936.1\|WP_096462815.1\|783677_784646_+\|cytochrome-c	unknown	unknown	gnl\|CDD\|224921
NZ_AP014936.1\|WP_096459015.1\|756327_756804_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319941
NZ_AP014936.1\|WP_096459059.1\|784783_786469_+\|alpha-glucan-family-phosphorylase	unknown	unknown	gnl\|CDD\|273968
NZ_AP014936.1\|WP_096459041.1\|775927_777187_-\|D-amino-acid-dehydrogenase	unknown	unknown	gnl\|CDD\|234819
NZ_AP014936.1\|WP_096459018.1\|757136_757418_+\|DUF768-domain-containing-protein	unknown	unknown	gnl\|CDD\|283283
NZ_AP014936.1\|WP_169923953.1\|755485_755881_+\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|378915
NZ_AP014936.1\|WP_096459032.1\|767001_769857_+\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NZ_AP014936.1\|WP_169923956.1\|783249_783720_+\|cytochrome-c	unknown	unknown	gnl\|CDD\|376525
NZ_AP014936.1\|WP_096459047.1\|779131_779914_-\|DUF3800-domain-containing-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_AP014936.1\|WP_148665364.1\|770003_771110_+\|DUF1207-domain-containing-protein	gnl\|CDD\|310969	pfam06727, DUF1207, Protein of unknown function (DUF1207). This family consists of a number of hypothetical bacterial proteins of around 410 residues in length which seem to be specific to Chlamydia species. The function of this family is unknown.	2.69926e-57
NZ_AP014936.1\|WP_096459026.1\|760617_761625_+\|integron-integrase	gnl\|CDD\|131303	TIGR02249, Integrase/recombinase_E2_protein., integron integrase. Members of this family are integrases associated with integrons (and super-integrons), which are systems for incorporating and expressing cassettes of laterally transferred DNA. Incorporation occurs at an attI site. A super-integron, as in Vibrio sp., may include over 100 cassettes. This family belongs to the phage integrase family (pfam00589) that also includes recombinases XerC (TIGR02224) and XerD (TIGR02225), which are bacterial housekeeping proteins. Within this family of integron integrases, some are designated by class, e.g. IntI4, a class 4 integron integrase from Vibrio cholerae N16961. [DNA metabolism, DNA replication, recombination, and repair, Mobile and extrachromosomal element functions, Other].	7.04758e-161
NZ_AP014936.1\|WP_148665365.1\|777436_778417_-\|sodium:calcium-antiporter	gnl\|CDD\|223604	COG0530, ECM27, Ca2+/Na+ antiporter [Inorganic ion transport and metabolism].	1.66975e-31
NZ_AP014936.1\|WP_096459053.1\|780746_781703_-\|IS1595-family-transposase	gnl\|CDD\|372298	pfam12762, DDE_Tnp_IS1595, ISXO2-like transposase domain. This domain probably functions as an integrase that is found in a wide variety of transposases, including ISXO2.	1.87789e-46
NZ_AP014936.1\|WP_096459059.1\|784783_786469_+\|alpha-glucan-family-phosphorylase	gnl\|CDD\|273968	TIGR02094, Glycogen_phosphorylase, alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/pfam00343.	0
NZ_AP014936.1\|WP_096459029.1\|761647_766789_+\|PHP-domain-containing-protein	gnl\|CDD\|235553	PRK05672, dnaE2, error-prone DNA polymerase; Validated.	0
NZ_AP014936.1\|WP_096459020.1\|758063_759154_+\|IS3-family-transposase	gnl\|CDD\|372671	pfam13683, rve_3, Integrase core domain.	8.75554e-31
NZ_AP014936.1\|WP_096462814.1\|782701_783145_+\|NUDIX-hydrolase	gnl\|CDD\|239516	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer.	1.30697e-49
NZ_AP014936.1\|WP_096462815.1\|783677_784646_+\|cytochrome-c	gnl\|CDD\|224921	COG2010, CccA, Cytochrome c, mono- and diheme variants [Energy production and conversion].	1.65884e-10
NZ_AP014936.1\|WP_096459015.1\|756327_756804_-\|VOC-family-protein	gnl\|CDD\|319941	cd08353, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	6.29752e-89
NZ_AP014936.1\|WP_096459041.1\|775927_777187_-\|D-amino-acid-dehydrogenase	gnl\|CDD\|234819	PRK00711, PRK00711, D-amino acid dehydrogenase.	0
NZ_AP014936.1\|WP_096459018.1\|757136_757418_+\|DUF768-domain-containing-protein	gnl\|CDD\|283283	pfam05589, DUF768, Protein of unknown function (DUF768). This family consists of several uncharacterized hypothetical proteins from Rhizobium loti.	1.3559e-16
NZ_AP014936.1\|WP_169923953.1\|755485_755881_+\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|378915	pfam12680, SnoaL_2, SnoaL-like domain. This family contains a large number of proteins that share the SnoaL fold.	5.98822e-09
NZ_AP014936.1\|WP_096459032.1\|767001_769857_+\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	8.11373e-56
NZ_AP014936.1\|WP_169923956.1\|783249_783720_+\|cytochrome-c	gnl\|CDD\|376525	pfam01322, Cytochrom_C_2, Cytochrome C'.	3.93383e-34

>NZ_AP014936.1|WP_148665364.1|770003_771110_+|DUF1207-domain-containing-protein
MSMLLRMLRILALIAAVLAAPPVLAADDPQVADDPQGDAFLAGYIQSILERQLGWERGTYRLEVRDRAATLLLLVDDPERRAAAEDALGQIDALQSLTITVAVTGDASLPEPRPGPILFPVGDFFRPLIADPKEPRFFMSLLEMDTPTDRVTAASVGYGESFGLWRAPGDRAGDGWQLSFVGGLFAQFNLSAPSSDLVNADYNIGFRLSQRTGRFSTRWRLYHQSSHLGDEFLLSQPDIERMNLSIEVVDVTFSYERSRWRAYGGVGYMIGRDPSDLEPGMAQAGAEYRSTRVHHIGRFLAGLDVRILEEEDWETGVSLKAGFELGPPDPGRRNVRLMLEAYDGFAPFGQFFRTDDIRYYGAGIYFGF
>NZ_AP014936.1|WP_096459032.1|767001_769857_+|insulinase-family-protein
MLRLYARLLCCLALFAPAAFAGQAVDLDAPLPVDETIHYRVLPNGMRYWIRPNTPPAGKVSMWLRVGSGSLNESDEQRGLAHLLEHLAFNGSKNFPAGTLIKRFEAAGLTFGAHQNATTGFLDTVYKLTVPNNPETLDLGLTYFSDVAHRLTIDEKEVERERNVVLAERTARDNAASRAFNKQLLALVPGSRFGERMPLGDTETIARATAAQLRAYYEKWYRPDNTVLLVAGDLDVEALDKLVRKHFSDWQPVASPAPNHDPGIKPYSADRAEVISEYGLFNADLNVARLEPPRDFRNARGYREWLVHRIGRQIVNARLRDLILEGRTRFGSAWAAGDSSFGTTLVEVHARSAPEDWKTALRELLVEIKRARVHGFGDAEFAYARDVIRTEVEGDAFEEADTEALRWLKVMEAALDEGRRPMGAGQELALFRRLMPTITRAEVEAAAAARHAPERRTFTLALPRWDGHPAPTADELLAIVRAADAETVARLPDRQRATTLLAKDPAPGAVAERSHDPDLDVVSVTLENGVRVHVRPLKYKNEQVSVRITLAGGRVAETPANHGISEVAALPFKVPSSESLGSVDLRRILATKHFELSGRDTAGGIELDLTSPRHDLEDGFRLAHLLLTQARIEPAVFDMWKRQASERQANREGSVDAQLNDRVDALLTSNDARFQVLTPKEVERLTLEAGQAWLDGMLRHSPIEVAIVGDLTHEQAVALAAKYLGSLPERGSIKNAYALARTLNAPAGPHQALVKVDTATPRAMVYVGWRGPDWQDVHDWQVLDLAGRILSSRLLKEVREQRGLAYSLRARASANTLYRGNGRFRVSFATDPLKAEEAADVVQRVIDEFVTKGPTPEELTTAREQASLSFRSGTRAPAFWLDVLGDLEYMGADLTWVKRYVENVEKYTREDLIVVLKKYIRPDRMVRVIGAPMELPSAANEPAQNPVATIN
>NZ_AP014936.1|WP_096459029.1|761647_766789_+|PHP-domain-containing-protein
MAASSAYAELHCLSNFSFLRGASHPEELVARAKQLGYSALALTDECSLAGVVRAHLAAREYELKLLIGAEFRLSEEQTVIPSPQPSPAKAGEGELSTPSPQPSPGMAGEGEEHWRLVLLAPDRAAYGDLSELITLGRRSAEKGTYRLTRDDIAAYSGRCLALWLPGDPADPQELQWMREVFGDRLWIAVELLRTGRDRERLAALRGLGERYGVPLVAAGGVQMHARKRRRLHDVLAATRLGTTAAQAGLALAGNAERRLRLRSELAEIYPAELLAETLRVAERCTFSLDELRYEYPEELVPAGETPASHLRKLTEEGLKRRWPEGEPAKVRALVERELALIRELSYEPYFLTVHDIVRYARSKGILCQGRGSAANSAVCFCLGITEVDPARIETLFERFISKERNEPPDIDVDFEHERREEVIQYVYDKYGRDRAALAATVITYRMKSAVRDAGKALGLTLEQVDRLAKNFQWWDSPSPPSPLPDHSSLPPTPPLPQSGASRGSANGPVDRLPGERAAKDGCPGLSCEAGGATGKRQGVRDPHPHPFSQREKGASRARSTRDSVHSVGEPLREKRARLPSPPSPLPSGTGEGGEPRREKHAHSILSERLREVGFDPDNPLMRRVLELARELLGFPRHLSQHVGGFVISRGKLSRLVPIENAAMPERTVIQWDKDDLDALGLLKVDCLALGMLTAIRKSFDLIAGYRGERLTMATVPAEDPAVYEMASHGDTVGVFQIESRAQMAMLPRLRPACFYDLVIETAIVRPGPIQGNMVHPYLRRRQGLEPVSYPSEEVRGVLERTMGVPIFQEQVIKLAMVAAGFTPGEADGLRRSMAAWRRRGGLEHYERRLIEGMRAQGYPEAFARQIYQQILGFGEYGFPECVVGETRVVDADTGRWVTIDEAMRGAARLEHTLACGADLRLARRRVRAVVASGVKPVFRLRTALGHTLVASAEHPFLTAGGWRPLSELREGDHVAAARGLPSLGRRRWPRHRLVVLAGLIAEGNLCHPSTFYFYTTDPRYREEFVRAVERFPNTEAVVERHRSCFSVRVRRRDRRRVSGAVLWAQRLGIWGCGAREKRLPGEVFELCEADLALLLARLWEGDGGFSKAGHASYDTASRRLAEEVQHLLLRLGIVARIYRRVRPYRGREVESHVVTVTGSDALQRFAQRIARRFLSPEKRRRAEAAIAGGHGRMSRDVIPADVREIIRRERERLGLTWNAIGLMTGLGMREIQGRTETKIGFRRFVIARLATCLASQELACLAASDIYWDRVVAIEPLGRHPTYDLQIEGDHNFLANNLVVHNSHAASFALLIYVSAWLKRHEPAAFLAALLNSQPMGFYAPAQLVQDARRHGVEVRPVDVRYSGWDCTLGEPEQSRMHLTCIPAGERPAMGEAEFSRKPGGLSRRRTAMPRMAWPGLASEAGRGALQGRAGVNRSGSVSPRMAGTATAANPTTAALTPSPLPQAGEGESIGFSHKYLQPAVRLGLRQVKGLTEAGARRLVAARVEAPFASVADLARRAGLDRRDLDALAAAGALRALSGHRHRARWAVAGVERPLPLLAGAEIAEGVPLLRPPTEAEDLVADYASLGLTLGRHPLALLRGELRARYRCLSAADLRAVPHGRRARTAGLVVCRQHPSSASGVIFITLEDETGQTNLIVWPGVVERQRREVLHARLLVVSGEVQREGEVLHLIAGRLEDRSALLGDLLARSRDFH
>NZ_AP014936.1|WP_096459026.1|760617_761625_+|integron-integrase
MAGSTSASATQSPRLLEQLRDAVRRRHYSYRTEKAYLHWARRYILFHHKRHPAEMGEPEVGMFLTHLAVERRVSASTQNQALNAILFLYKQVLNRDIGLIEGVTRAKRSQHLPAVLSRDEVQAVLTRLSGRAWLMAGLMYGAGLRVTECLRLRIKDVDFGFRQILVRDGKGKKDRAVPLPQATTAALRLQIEAVSRIHAADLADGFGDVSLPYAIDRKYPNASRELGWWYLFPASHRSRDPYTGRIKRHHLDESVIQRAVKRAVAAANIRKPVSCHAFRHSFATHLLAGGQDIRTIQELLGHKDVSTTMIYTHVLGVGARGVASPFDSLFVVTQG
>NZ_AP014936.1|WP_169923954.1|759937_760249_-|hypothetical-protein
MVILTVIIAFFTYLVWKVYERIAWLTGAMESHSDIMMRIEAKRGINGDPIKLVAWDPTIEPPPIKREHGEEIDVNTIYVYLPLDQRKNKPTWWGRVQALLRFP
>NZ_AP014936.1|WP_096459020.1|758063_759154_+|IS3-family-transposase
MKKRHNEEQIIRILREAETTGVQIRELCRRHNITEQTFFRWRNKYGGMEVSEARRLKTLESENAKLKKLVAEQLLVIEGLREFFRKKMTSPAGRREALAALTSRGVSSRAACRYLGFSRRVPHYALRQPAKDRLLTQALLVSAQQHPRFGYRRTSAWLDLGLWRVRRLWRELKLALPRRRPRRRRCGTDIRLPGATRPNHVWSYDFVHDRLASQKAIRLLCVIDEHTRECLAIEVARSLTSRDVILTLGRLMRLYGKPEFIRSDQGAEFTATAVMRWLRDQNVGPAFIPPGKPWRNGFVESFNGKLRDECLNREWFRDLAEARTVIESWRQFYNHRRPHSALGYRPPAEVRAEQAKLVLGLTG
>NZ_AP014936.1|WP_148665362.1|757695_757989_-|hypothetical-protein
MLANVPRTYMRAHVTSGNRTEDWFWQLPDVKEGETISFRLVEATDRAGVPPQERKPKDPKEQKRLKQLAAKAWAKAKKGMKKKKTKTGLTRRSRRTR
>NZ_AP014936.1|WP_096459018.1|757136_757418_+|DUF768-domain-containing-protein
MSKRFLRWAETWIEENIPPGANPDIESHEARAKRLMEKMFAEAAAANFSDVETKEERERIAPLVLAAVSDTTDFDYDSYTLKYLLAQENEDGD
>NZ_AP014936.1|WP_096459015.1|756327_756804_-|VOC-family-protein
MTVKRMDNVGIVVEDIDAAIEFFTELGLELEGRVPVEGDWADGVTGLRDMRVEIAMMRTPDGHSRIELSRFLAPTVVADHRSAPVNALGYLRVMFTVEDIDDTLARLGKRGATLVGKVVQYEDMYRLCYIRGPEGILIGLAQQLGQQASRANPMSRKH
>NZ_AP014936.1|WP_169923953.1|755485_755881_+|nuclear-transport-factor-2-family-protein
MSTEIEALKRLFAAINCNDLRAVTKDFNPEIVRIEPEGFPTAGTYRGIAEVQEHIMKGRGTWAEGTCEPEKFLENGDKVVVYLHAWVRLKASTEWVGGRFADGFVFRNGKIVQYLSFGERAEALKWAGIKD
>NZ_AP014936.1|WP_096459041.1|775927_777187_-|D-amino-acid-dehydrogenase
MNVVIVGGGVIGVTSAWFLRQAGHDVTVIDRQSGPALETSFANAGQVSWTFAKPWAAPGVPRNALKWMLQEHAPLVLRPRLDLAMWSWLLRMLANCREPRYLRNLERMLRIARYSHETLVELREQTGIVYDHATRGTLQLFRDEAGVAAAERERPILERLQVPHRVLDAAGCLSVEPGLRFSTVKFAGGVHYPDDETGDCHAYTSELARRAEAQGVVFRTVTAVRTLEAEGDRVRAVHTDGGQITGEVYVLAAGSYTPLLARPLGIRLPVYPVKGYSATVPIENADAAPGSTLTDERYKVAITRLGNRLRAAGTAELAGYDLTLRPARLRALAHVIGELFPRAGDLSRAEYWTGLRPMTPDNLPVIGPTPYRNLYLNTGHGTLGWTMSNGSARLLADIISGKKTAIDLDGLTLARFGRG
>NZ_AP014936.1|WP_148665365.1|777436_778417_-|sodium:calcium-antiporter
MLPDLLIVVGGALLILVLAEIVLRETLALMAHYRVSASFVGLTVLSIGTSLLEIVTHVIGSVQILHAPESMDTLSGLLIGSNIGSDILQQNFVLPLAGLIGSVVVVRRLLVVEVGGLIAASCLLWLACAGGAVTRVEGLLLVLAYAGYLTYVARTGAHTGRVAHARRLGRPRRYRAMAVVALAFAAMAWVADPVLLAATRLVARLPLSASFFGVIVLGVAATLPELMTALVSIARGQRDISAGILIGSNITNPLLGVGLGALISGYTAPTVTVYYDLPVKVATGVLLYFFLRRRNGLGRPEAVALILAYIAYVALRPLLFPEDLPQ
>NZ_AP014936.1|WP_148665366.1|778425_778776_-|hypothetical-protein
MPDLHSLTAPLSIRFPDGTRHVMAEHFPHPKGLLWFEPYWHLGDPDKTIHLTEGAIRGEGPWKVGDAVVNVLGCHGTDAALASAFEAWRHYLAANANDYPPRPLVEAIARRYGATP
>NZ_AP014936.1|WP_096459047.1|779131_779914_-|DUF3800-domain-containing-protein
MSHTFLAYIDESGDDGLKKFRDKKQDGSSQWLALGCCVVRQSNDLSLVKHRDSILAEIGKTKLRHVHFCDLDHHQKIAACRVVSQAPIRAISVLSNKKTVPKELAFAGEKGKLYWYLARHLVERVSWLCDEDNRENTKRVKIIFSNRSGLSYEKFREYLTVLKTQCETSIRWNVIDIDEVDSKPHTQLAGLQLADCIASGFAAAVEPTRYGDYEPRYAEILKPTTYSRKGKYIGYGLKILPNPEALNGEQAKLLGIFKKK
>NZ_AP014936.1|WP_169923955.1|779989_780244_+|hypothetical-protein
MGLATATQESEEEIKEETGLMAGSLFTENQNAQVSQGNHCKAFRLAVGRSSIHQNRILERAYRLFFSQLAQLSLNPCQAPIFAD
>NZ_AP014936.1|WP_096459053.1|780746_781703_-|IS1595-family-transposase
MAKNNNLSAPQFHDPEKARQYLERTVWPYGPVCPHCGTVGDHYELKGKSTRPGLYKCHMCREPFTVTVGTVFERSKIPLNKWLMAVYLLCSSKKGMSSHQLHRTLGVTYKTAWFMTHRIREAMKTDPSGLLGSGGGTVEADETFWLNSKRSKKGREYKGRGFKHKEKILALVERGGQVRSFHIPEVNASNLRPVLKAQMARDAHLMTDEHQSYKAFGHLFASHQHVKHGQGEYVRGNVHTNTVEGYFSLLKRGLIGTYHHCSAKHLQRYVTEFDFRYNNRSRLGIEDKERADIALQGIVGKRLTYRRTDPKTAEAPKA
>NZ_AP014936.1|WP_096462814.1|782701_783145_+|NUDIX-hydrolase
MQLEVVRHPGGAAVVALDADGRVCLLRQYRHAHRDWIWELPAGKLDPGEPPLETARRELIEEAGRRAGRWSPLGRIITSPGVFTEIIHLYLAEDLEEAPAAPEEHELFELHWVPLREAIERALTGAIEDSKTIVGLARAARFLEGRE
>NZ_AP014936.1|WP_169923956.1|783249_783720_+|cytochrome-c
MRSSKNKKAWSCFAVAALLSLPVVAGAESEPEDIIKYRQNVMKANGANMGAIAAILQGKVPEYKDRLGDHARGVQAGTKNIPALFPDGSDFGDTEALESVWKDRAGFKKRSDDTSKKADALAKAVAGGDAKAIQARFRELSDSCKACHKDFRKEQQ
>NZ_AP014936.1|WP_096462815.1|783677_784646_+|cytochrome-c
MQGVPQGLSQGAAIIRRSPVLAGAALLTAALVLPAPPAAASELAKRGEYVYRASGCGNCHTDREAGGAELAGGAALETPFGVFYAPNITPDREHGIGAWSDEDFLRAMREGVSPQGSHYYPAFPYTSYTRLTDEDLRALKAYLFTVSPAARPDRPHELPWYARLRPLLYFWKWLYFEPGPYRPDPQQSPAWNRGAYLATAAAHCGECHTPRDRFGGFDRERRFAGTKDGPEGAVVPNITPDRKTGIGRWSERDIAYYLETGMTPDGDFAGDVMADVIDNGLSHLAKDDLRAIAHYLKSLPAIEHAVSKRKKDKPGKRDEFEY
>NZ_AP014936.1|WP_096459059.1|784783_786469_+|alpha-glucan-family-phosphorylase
MSPGAYIAYFSMEIGLAPGVPTYAGGLGMLAGDTLRTAADLGVPMVGVSLVHRKGYFHQRVDPTGWQTEEPVAWSLDDHLTELPARASVEIEGRPVQIRAWRYDIRGTGGASVPVFLLDTDLDGNAAADRLLTHFLYGGDSHYRLCQEIVLGIGGARMLDALGYADIDRYHMNEGHAALLVLELLKRQARANGHERPRPEDIEALRPRCVFTTHTPVPAGHDQFPLAMAEKALGAGMYVCLLDEFCYEQKLNLTYLALAASHYVNGVAKKHGEVARHLYAKYRVESITNGVHVATWASEPMRALFDRHVPDWRTDNPGLRYAIGVPLGEIREAHRAAKRELLAYVNHVTNKGFDLDVFTIGYARRATAYKRPTLVFRDIERLRGIARRRAVQLVFAGKAHPHDLPGKELIQEVHRAMGLLDTDVKIAFLPEYDMTLARLLVAGTDLWLNTPQPPLEASGTSGMKAAVNGVPSLSVLDGWWIEGWIEGVTGWAIGEPGAAASDDRAAEAASLYDKLERVILPLYYDEPDRYVDVMRRAIALNGSFFNTERMLNQYVTRAYFR

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Crispr_ID: NZ_AP014936_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP014936_2

881016-881103

Unclear

Consensus_repeat	Method
TGTCATTGCGAGTGCAGCGAAGCAATCTC	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NZ_AP014936_2

>merge|NZ_AP014936|2|881016-881103|CRISPRCasFinder
TGTCATTGCGAGTGCAGCGAAGCAATCTCCGCATCAACGAGCCACAACACAGAGCGTTCTGTCATTGCGAGCGCAGCGAAGCAATCTC

>NZ_AP014936|2|2|881016-881103|CRISPRCasFinder
TGTCATTGCGAGTGCAGCGAAGCAATCTC	CGCATCAACGAGCCACAACACAGAGCGTTC
TGTCATTGCGAGCGCAGCGAAGCAATCTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014936.1\|WP_096459261.1\|878314_878731_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014936.1\|WP_096459253.1\|874255_874699_+\|NfeD-family-protein	unknown	unknown	gnl\|CDD\|224501
NZ_AP014936.1\|WP_096459273.1\|884326_887812_+\|DUF3883-domain-containing-protein	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|350769
NZ_AP014936.1\|WP_096459285.1\|892753_895585_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224400
NZ_AP014936.1\|WP_096459249.1\|871823_872216_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014936.1\|WP_169923966.1\|895804_896176_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014936.1\|WP_096459257.1\|875717_877658_+\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|223715
NZ_AP014936.1\|WP_096459251.1\|872419_872965_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223386
NZ_AP014936.1\|WP_096459267.1\|881184_882540_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014936.1\|WP_096459279.1\|889284_892158_+\|DUF1156-domain-containing-protein	unknown	unknown	gnl\|CDD\|224657
NZ_AP014936.1\|WP_096459282.1\|892159_892744_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014936.1\|WP_169923964.1\|873270_874245_+\|SPFH/Band-7/PHB-domain-protein	unknown	unknown	gnl\|CDD\|223407
NZ_AP014936.1\|WP_096459291.1\|898046_898751_+\|DsbA-family-protein	unknown	unknown	gnl\|CDD\|372611
NZ_AP014936.1\|WP_096459263.1\|879073_880027_+\|SGNH/GDSL-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|238882
NZ_AP014936.1\|WP_096459294.1\|899107_900439_+\|peptidoglycan-DD-metalloendopeptidase-family-protein	unknown	unknown	gnl\|CDD\|236946
NZ_AP014936.1\|WP_096459259.1\|877842_878121_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014936.1\|WP_148665374.1\|882872_884081_+\|DUF2183-domain-containing-protein	unknown	unknown	gnl\|CDD\|227187
NZ_AP014936.1\|WP_096459265.1\|880318_880951_+\|YIP1-family-protein	unknown	unknown	unknown
NZ_AP014936.1\|WP_096459276.1\|887815_889288_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379114
NZ_AP014936.1\|WP_169923965.1\|874791_875190_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341390

Protein	Function_ID	Function_description	E-value
NZ_AP014936.1\|WP_096459253.1\|874255_874699_+\|NfeD-family-protein	gnl\|CDD\|224501	COG1585, COG1585, Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	2.22278e-29
NZ_AP014936.1\|WP_096459273.1\|884326_887812_+\|DUF3883-domain-containing-protein	gnl\|CDD\|350769	cd18011, DEXDc_RapA, DEXH-box helicase domain of RapA. In bacteria, RapA is an RNA polymerase (RNAP)-associated SWI2/SNF2 (switch/sucrose non-fermentable) protein that mediates RNAP recycling during transcription. The ATPase activity of RapA is stimulated by its interaction with RNAP and inhibited by its N-terminal domain. The conformational changes of RapA and its interaction with RNAP are essential for RNAP recycling. RapA is part of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	5.06647e-65
NZ_AP014936.1\|WP_096459263.1\|879073_880027_+\|SGNH/GDSL-hydrolase-family-protein	gnl\|CDD\|238882	cd01846, fatty_acyltransferase_like, Fatty acyltransferase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Might catalyze fatty acid transfer between phosphatidylcholine and sterols.	1.49764e-64
NZ_AP014936.1\|WP_096459251.1\|872419_872965_-\|hypothetical-protein	gnl\|CDD\|223386	COG0309, HypE, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones].	0.00229955
NZ_AP014936.1\|WP_096459257.1\|875717_877658_+\|PAS-domain-S-box-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	8.77016e-50
NZ_AP014936.1\|WP_096459285.1\|892753_895585_+\|ATP-binding-protein	gnl\|CDD\|224400	COG1483, COG1483, Predicted ATPase (AAA+ superfamily) [General function prediction only].	2.02012e-35
NZ_AP014936.1\|WP_169923964.1\|873270_874245_+\|SPFH/Band-7/PHB-domain-protein	gnl\|CDD\|223407	COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones].	9.36738e-65
NZ_AP014936.1\|WP_096459279.1\|889284_892158_+\|DUF1156-domain-containing-protein	gnl\|CDD\|224657	COG1743, COG1743, Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair].	1.56171e-93
NZ_AP014936.1\|WP_096459294.1\|899107_900439_+\|peptidoglycan-DD-metalloendopeptidase-family-protein	gnl\|CDD\|236946	PRK11649, PRK11649, putative peptidase; Provisional.	2.68742e-35
NZ_AP014936.1\|WP_148665374.1\|882872_884081_+\|DUF2183-domain-containing-protein	gnl\|CDD\|227187	COG4850, COG4850, Uncharacterized conserved protein [Function unknown].	1.57269e-42
NZ_AP014936.1\|WP_096459291.1\|898046_898751_+\|DsbA-family-protein	gnl\|CDD\|372611	pfam13462, Thioredoxin_4, Thioredoxin.	1.0289e-39
NZ_AP014936.1\|WP_096459276.1\|887815_889288_+\|AAA-family-ATPase	gnl\|CDD\|379114	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system. Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.	1.41712e-13
NZ_AP014936.1\|WP_169923965.1\|874791_875190_-\|CBS-domain-containing-protein	gnl\|CDD\|341390	cd04622, CBS_pair_HRP1_like, CBS pair domain found in Hypoxic Response Protein 1 (HRP1) -like proteinds. Mycobacterium tuberculosis adapts to cellular stresses by upregulation of the dormancy survival regulon. Hypoxic response protein 1 (HRP1) is encoded by one of the most strongly upregulated genes in the dormancy survival regulon. HRP1 is a 'CBS-domain-only protein; however unlike other CBS containing proteins it does not appear to bind AMP. The biological function of the protein remains unclear, but is thought to contribute to the modulation of the host immune response. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	2.30443e-43

>NZ_AP014936.1|WP_096459265.1|880318_880951_+|YIP1-family-protein
MSFAFAPSPWLAIWLSPRATVRRLLDGPPRHREHILGTLFAISDALGIAVLRNWGDGLDLEVILLIAVGLAPVRMVFYLYMYPALAWLTGRWLGGQASLRDIRIATAWSFVPALGAALLWIPEIALFGDELFMSEHPTIEGSPWLTGALYAFVALEVVGLAWFGVVFLAALAEAQRFAVWRAVASVALAVALLVGPIYFGLNWLAGGIEP
>NZ_AP014936.1|WP_096459263.1|879073_880027_+|SGNH/GDSL-hydrolase-family-protein
MPIFSPARFIRLALVVLSLLLAGNALAGTAQGRIVVFGDSLSDPGNAFVLLHDVEVRPFELIPAAPYAIGGLHFTNGETWVEQLARALDLNGSGPALAVPGVHSNYAVGAARARTGAPFDLSAQVDLFLADFSGVVPADGVYVVFVGGNDLRDAIEALIVDPSGETTAGILEDAVSAVATNIERLHAAGARTFLVPNAPNLALVPAIRAQGVGAQLVAQMLSAAYNDMLAARLAALEAQLAGETLHRVDVYALLNQTVVAPSLFRLSEVKAPCITPDTFVEAICDRPDDYLFWDGIHPTRAGHAILARRARTVLLSP
>NZ_AP014936.1|WP_096459261.1|878314_878731_-|hypothetical-protein
MKRVLSAIALAAGTTAMPALAADVGVSVSIGQPGFYGHIDIGNVPPPPVVYAQPVIVQPVPVGVVYQPIYVHAPPGHVKNWAKHCGQYGACGRPVYFVQSNWYNEVYVPEYQKRHGGPKNKNGGKNGHGNGHGKGHRD
>NZ_AP014936.1|WP_096459259.1|877842_878121_-|hypothetical-protein
MSKNALVSIVGAAALIVAAFVFNPSPEKHRTTIEDVIADRSPIAGVLGLGALTAFTSTYHSWGVGSYTTVNGRVVSVGALGMVFVMQSALSE
>NZ_AP014936.1|WP_096459257.1|875717_877658_+|PAS-domain-S-box-protein
MSIDHPTDQPRPIPCPWERVCEHRTLFDVMAVGHAVNDVRTGHFLQVNSKLCELTGYTEKELLSRTIFDVIHPDDCEPVRERARRIAAGEVAEWQAEKRYLRKDGQIRWVLIAGRSVRSAQDADPRVVRAVQDVTERRIAEEALRESEARYRRLVELSPGIVLVHRDGAVIYANPACVRFFGAQRVQEVLGRAPLDFVHSDYRDLVRERMKQVSESNVPNPPREMKWLTLGGEARDVEVVAASIPWEGRRAIMVIAHDITERKRAEEELREADRRKDEFLATLAHELRNPLAPIRTGADIVRVHGGGSSRLQWAASLINRQVGHLTHLVDDLLDLSRVTRGRLSLTFEQVDLRDVVWQAVEMNRAALDARGHALTVEVTEGRFFLRGDVLRLVQVVSNLLSNAIKYTPNHGTLHVSAIREDERVTLRVRDTGVGIKPDLLPHIFHLFVQGERTLDRAEGGLGIGLTLVKAIVEMHGGEVAAKSAGPGKGAEFTIRLPLLPISGSYRTESRPQPSYAPSRNPRRVLLVDDNRDALESLGYLLEQMGHDVRLATDGHEALALAREFRPEVAVLDLGLPGLTGFELARELRQDATLGSVILIALTGYGQEIDQQKSRRAGFDFHLLKPVGLPDLTQILEDAPPRKDVPV
>NZ_AP014936.1|WP_169923965.1|874791_875190_-|CBS-domain-containing-protein
MTSTFATVRSNLTIQEAARKMRDRNIDCLVVVEGGEPIGIVTDRDLCCRAVADRIDPSRATVRDFMTAKVAFCFGDQDIVDGAHLMEKQHIRRLAVLDRENRMLGLVSVDDIARCSYFLAGQILERSAVTAH
>NZ_AP014936.1|WP_096459253.1|874255_874699_+|NfeD-family-protein
MKPVLFWHWWVLAAIFVTLEIVVPGTFMLWLGVAAGAIGLVLFVAPDLRVEIQLLIFAAISVGSILAWRAWLKRHPTPTDHPTLNRRAEQYISRVFRLEQPIVNGQGKAIVDDTTWLVTGPDLPAGTAVRCVGVDGTVLRVEKAEAA
>NZ_AP014936.1|WP_169923964.1|873270_874245_+|SPFH/Band-7/PHB-domain-protein
MYPVPDFDIFTIFAIAIVLFAVVFVFGGVTTVSQGWNYTVERFGKYIRTLEPGLHIIVPVVDRIGSKMNMMERVLDIQSQEVITKDNAMVRADGVVFFQVLDASRAAYEVHGVELAIHNLAMTNLRTVIGSMDLDEVLSNRDKINVALLHVIDEATRQWGVKVTRIEIKDISPPKDLIEAMGRQMKAEREKRAVILEAEGEKEAAIKKADGEKTAMILAAEGRLVAAQRDAEARERLAIAEAEATRVVSDAISSGTPQAINYFLGIKYVEALRAIGEAKNEKIVFLPLDATGVMGAIGGIQELVKTAAASAAATPARVAPGRAG
>NZ_AP014936.1|WP_096459251.1|872419_872965_-|hypothetical-protein
MSKTVIGVFETFEDARAAREALEMSGQRYDRAVVQRGDEFVSRMESTAPTAEGEDLRRGIQQFLEELGMKSPGEQRPIASEDGVLVVVTPDARAEAIAAFMDEHGAVDIDERRGRATNIGKEPRGATGFEAQVGGRTPPGMEEGEPGWTGSTDTGHSNPAERKRSEAEHESRRTCARIFNC
>NZ_AP014936.1|WP_096459249.1|871823_872216_+|hypothetical-protein
MKTSRRTTPGNVVRFQKNGDAIEHRWFPRRPAEFQVNVIPPDLPAALGRTTDIGLGGMFVTMNAEHLQANDLVSALIYIGARCYHTQAFVTRVTGQGVALMFAHLDRKTLEFLLVLETGDNQHELDARQA
>NZ_AP014936.1|WP_096459267.1|881184_882540_+|hypothetical-protein
MRYLDKFLKWLGFGLLLAPFVWYLVFRFDEPLDPEVQAALTAEVRVPEEENGYYALLGMHAPAEVADVHAHGRDLVAQYRQALAADPDLAAYQFPERALDFRGDQALLCKPQKSACLSQAAKSSRGLDRLLEQNAVLLARYRALYRYPRFVETIPAHRSAPFAHYPIDARNLVLARIARDAARGRLEPALDALAEDTRYWRAVLADTRTLLTKVVAVASLHRNYELLAEILAAAPIPPAAEQRLKPMLAPLTPAERSMVEPLRWEFAAYGNYAKAIKAGVKEGLEGPDNGNATRAVLAWLGDALVQENATRNLVYRHHMAIAALADVPSTEFDARRAALEEEYAFRLGWHYLYNPLGKFLFHVSQPEWPKYAARIHDLDGYIRLVRLQLELKWGRVRLPDVPTYLADAGTSLNDPYTGQPMAWDPATKTISFRGRGVRPKDSPILAVRLGG
>NZ_AP014936.1|WP_148665374.1|882872_884081_+|DUF2183-domain-containing-protein
MKSPTSAASHTAEAVARETLDHAREIPPVGGMSYRSGALSRLVGVLCLCLVAGVQADQREIVVYPGYGGSRVVIEGRVIEARGGSTEAAGDSWITNLWRTARRLVSDEQEDVAVNVRFEGRTFRAATDEEGYFRVEADLPAGSPAGWRSVEAATGNGDARAKGKVLVVPADNRLGIISDIDDTILISEVTDKSRLLRNLLLVNYVQRQAVPGTAAFYARLAGRNPKPEAAPVFYLSASPRQLQGGIQTFLDRNGFPPGVLITKKVTNDETSDPLLDQVRYKTGRIEQLLAALPQVRFVLVGDDGEKDPEIYDEIRRRYPDRIEAIWIRKAADVVPRPTYPGQRDLAEALGGAGRERGGHRNQHAFWLPPVAPEPNQRTARSSLLGSRPILTRRASWRPAALC
>NZ_AP014936.1|WP_096459273.1|884326_887812_+|DUF3883-domain-containing-protein
MRIDELKANTVIHGSSLPEPVQVIVVVPLGTSAKVIGKGRNTGMVYEPVLNEEQLIGIQVLPEETFDGDGERFRLGVEAMRLALAYEYDPYFSLSIARVDPLPHQLEAVYDYFMRLPRIRFLLADDPGAGKTIMAGLLIKELKIRGLVKRVLIITPANLTFQWQRELKDKFRENFEVIRSDVLRANYGMNPWQEKDQVVTSVSWVSRIEDAKDSLLRSRWDLVIVDEAHKMSAYSSEKKTLAYQLGEALSNMTDHYLLMTATPHKGDPENFCLFLELLDRDVYGDIRSLEEAMARHEAPFYLRRVKEALVTFPEPETGHVKALFTRRIVTTSEFQISDEELDFYDRLTRYVEDQSIKAAADDSARGRALAFTMAMLQRRFASSLYAVRRSLERMRDKRERILKDPEGYRREQMNKRLPEDFEDLTDEEQQEIISQLEDVVASVDPAALREEIAELNKLINHARELEAREVETKLTALKDLLTKQGVFADPKMKLLVFTEHKDTLDFLAGSGREGRPLGKLREWGLTLTQIHGGMKIGDRDTPGTRIFAEREFRESAQVLVATEAAGEGINLQFCWLMINYDIPWNPVRLEQRMGRIHRYGQEKDCLIFNFVSTNTREGRVLHKLFERIEAIQDDLDPKRTGKIFNVLGDVFPANQLEKMLRDMYAHNQMTEELIKQRIVEQVDRRRFENITQSTLEGLAKKELNLSAIIGKSAEAKERRLVPEVIEDFFLEAGPLTGVSPKPAKTGAHIYKVGRVPRNLWPTGERLESRFGKLGREYGNIVFDKELLKQDATLEWVTPGHPLFEAVRQDVLGQVQEHLKRGAVFYDLHSQTPYRLDVFSASIRDGRGNVLSRRLFVVQAGMDGKTTIKQPTIFLDLTAAETPPEVPHDAALPDRNQVEVVLLEQALNPLLEESRREREREVATISRHAELSLNTIIHRENLLLADLISQKESGSTEPGLEGRIKISEDKLLELDHRLQSRRRELEQERQCSIGDIQHIGRAWVLPHPDRAAPGIAPMVSDPEIERIAVDTVIAHEEAEGRVVESVEAENRGFDLISRRPHPEDPKTAIDVRFIEVKGRASAGEIALTTNEYKTAQRLGNDYWLYVVFHCATPNPSVNILRNPATLDWQPIVKVEHYRLNVDSVRHPVELREDRAPYQKGGE
>NZ_AP014936.1|WP_096459276.1|887815_889288_+|AAA-family-ATPase
MADPKNELQASFQPAKRFQTYGDLILGLRAKGFRNHFDTKIEIESPITAFCGVNGTGKSTLLQLAAASYQAPNGQNRHYVSSFILAGTLDSKPFADDASIEITYEQPPESSGSIQPRTLTVSRSGSSWSGYDRQPERTVLYLGLAFHLPHAERDENFKTLFGDAQFRLREKHALEDRVVERVSTILLCKYDAAHRNTLRKRYGRTNTHLLTAKRCAGAEYSEANMGSGEARLYALVMQIEAAPEKSLLLVEEPETSLHPSAQYELGRYLVEVAKRRGLQIWLTTHSEYLLLALPQKSRIYLKRDGASVVPIPGVGVRQAVSLMDNFAIPAIYVLVEDDVAESIVAELLRMHDPDFLKTARVIVGGDKARIRQMMEVFQDQKLPVCGVRDGDFGDDKKLKMYKLFGNEPPEREIFKSAKFRELFAGQHGVDWDAVDIANQDKDHHGWFDVLEQQLARKRAEILPLAARAYLEGILETDRQALVDQIKAAVP
>NZ_AP014936.1|WP_096459279.1|889284_892158_+|DUF1156-domain-containing-protein
MKNDYKRLIEVDLPIRRISNHARAEKNIRSGHPWQLHIWWARRPWGACRAVALASLIPAPTDERCPEEFVKTATSVLTEVGFKPADGSRQKVEDALLRFIGEFARWEAGGDPHWRSAARKLVKAMHPHAPHVFDPFSGYGAIPGEAARLGCESVASELNPVALLCLRTLLEAMPRHGESLIEKFNEGAEFVKAEAEKRLASYYPERNGKQVIAWLWARTVTCEGPGCGATVPLISQTTIAKGSRKAWIEVTGDPKTKEVRIAVRSGKFIPAGLKKTAGGGYAICPVCGFTTDKERVKAQGKEGRIAHRLYGVAMAIGTRQGKEYAEPMPEDLAAFDKAVAAWERTLKSNPDADPREKYPFHDPRAFTAGQYGIKTWGDLFSPRQKLALHTIGEILRDYEQRLAARGEDRSLVRDTVTALALSVSNTVHYLTTMSTWLSEGMISCFIAGNAIAMRWDWAEANPLVDTYAGGLDFSFKKSEEALASTIAIDNTTTTVMRADAANYPLPDDAAEMFFSDPPYYDVVPYADLSDLCYVWLKRFVGHAQPDLLSEDLTPKAEQIVVNPYAVEDGRGDQSPQRYQERMTQAFTEARRVLRPDGIGCVVFAHKGTAAWETLLASIIDAGFVVTASWPIDTERAARMRAYKSAALGSSVHIVVRPRENPDGSLRTQEVGDWRDVLAELPRKIRGWIRRLIHEGVVGADAIFACLGPALEIYSRHARVEKANGDQVFLREYLEHVWATISREALATIFEGADATGFEPDARLTAMWLWTLRTEAGDAAAAVDDEDDESESKAGNAKGYALEFDAVNNIAKGLGIHLEDLTSVVEISKGNARLLAVSERTRYLFGGAPEEPVKRGRKKAEQQDLFAELLDEADAEFARREKVILKPGATTLDRVHQAMILFATGRGEALKRLLVDDGAGRDARFWTLANALLALYPKSSEESRWVDGVLARKKGLGL
>NZ_AP014936.1|WP_096459282.1|892159_892744_+|hypothetical-protein
MVDALGARFRETFFAVIQEDELARALKQAASDANLGAWTRALTEAAIRTCSRLGLMASAKGHKLELLPIHRNEYLALDVMAFSEGEKRWRFPAAVMELENSARDDQIAYSLWKVLSVRAELRIVFCYRRNGEEIPALLRHLREEVIEAMGLAGRVKLDGATLLVVGSRSESGTFPFGYFGWWSLDTNTGRFERL
>NZ_AP014936.1|WP_096459285.1|892753_895585_+|ATP-binding-protein
MKLKPWYDVVKPREDLREGKPLDASEFAVHLDKVRLGDQGNAPEDYKDPQRFFDRTFLTENLAGLGAEVMRRLSGITTETSAVFNMTTQFGGGKTHALTLLYHLARHGSAGNGWRGVAKILQRAGIPTVPDHCAVAVFVGTEFDSVTGRGGDDGTPRRRTPWGELAWQLGGTESFAHVAQHDAEFIEPKGDVIGKFLPADRPCLILMDEVLNYISTYRDRGWHNKLYNFIQALSETVRGRNNAVLVGSIPASELSYTDKDHADQQRLKNLLDRLGKAVIVSVESETSEIIRRRLFEWDERAVTSDGRVILDKQAEDTCRAYADWVQEHRQQLPSLINPDLAREEFRATYPFHPMVISVFERKWQTLPRFQQTRGILRLLALWVSRAYQEGYKGAQRDPLITLGTAPLDDPMFRAAVFEQLGETKLEAAVTTDIAGKKDAHAVRLDAEAIDAIKKARLHRKVAATIFFESNGGQVGAEAQEASVPEIRLAVGQPGSDIGNIETVLEALTDACYYLNVEKTRYKFSLKENLNKRFADRRATVQAPQVDEEVKREIQKIFAPKEFVERVFFPEKSIQISDRPVISFLIADLDRTMEDEKATRQFVEQMIRECGTTARTFKSALIGVVPDSAQSMREEARKLLAWQAIQDDADDLKLDEAQKKQLAEYSHKAKRDLKESIWRSYKHLFLLAKDNTVKMVDLGLVHSSAADSPLSNILNRLSADGDVEKGVSPNFLVRNWPPAFKEWATKSVRDAFYASPVFPRLLNAETIKETIARGVESGILAYVGKGTSGKYQPFAFNQSVSPADIEFSDDMFVITAETARAYLEGQAAQPPEGVSVGAGGTGAGAATGGGVEPDGKPIELPPSAPTPPDAGPAKIAGLRWSGEVPPQKWMNFYTKVLSRFAATGGLKLTVEVDVNPPDGFSKQTYEDTQNALRELGLDDRVAEK
>NZ_AP014936.1|WP_169923966.1|895804_896176_+|hypothetical-protein
MAKKKAIIHRYDNLPDILAVEKNGCSEVYKRSRDDDFELVIVVPTTRARTQKAVVADAASRQYRPPRARPWPGRPDAYPVRVDVRNVRYTTLSKVRDAMKKAGESWAAAWVIKSVMLEENDLF
>NZ_AP014936.1|WP_096459291.1|898046_898751_+|DsbA-family-protein
MLLAAGGVAAEGITEQQADDILNELRAIRRVLERQQEPEQPQARPPADQKVSIEFAPGGYSLGRADAPVVMVEYADYQCPFCRQYHQTTFEQIKRNYVDTGRVRYVSRDFPLAFHEHARGAALAARCAGEQGRFWELRHAMIANANQVKAENIFAYAGDLGLDMDRFRGCLESGRYGEKVERDVAEGRAAGVSGTPSFVLGRLNGDRLEGIRIVGAMPYQAFASRLEEAIEQSR
>NZ_AP014936.1|WP_096459294.1|899107_900439_+|peptidoglycan-DD-metalloendopeptidase-family-protein
MIRKRNNLSFNHELTFGTRRRRIRAPWVLSGLVVAGGLAYAVSREMPPAAPEPMPFPTAAELAVAPAPAPEPPPVRKVDIDYVVKPKDSLGSIFTALQIDVAELRAMLSDPAVQERFKVLKPGDRLTITLKNGVLDGLQRRISETEVLTVTRAESGFTAKVVETPIETQTAQVRGTINASLFVAGRAVGLSPEMLQQLATDIFGWQVDFARDIRPGDRFNVVFEQKYRNGEYLGDGRIVAAELTSNGETHRAVRYTSSDGKIDDYFTPEGQSVRRQFLRTPIDFTRVSPSSHDERQPVITTLRENQGIDYPAAIGTAVMAAADGRVKVLGERGEYGNTVIVVHGGGRSTLYAHLSGFARGLAPEQLVKQGEIIGYVGNTGAATAPHLHYEYRVNGAHAAPGTGEPEAASIPPEYLADFQAKSEALLASLEQPGEAVVTALLSD

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Crispr_ID: NZ_AP014936_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP014936_3

909305-909430

Orphan

Consensus_repeat	Method
TCACCCTCTCCCCGGCCCTCCCCCATCGAGGGGGAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP014936_3

>merge|NZ_AP014936|3|909305-909430|CRISPRCasFinder
TCACCCTCTCCCCGGCCCTCCCCCATCGAGGGGGAGGAAGTGGAATGAAGGTGAGGGGGAAGAGTGATGTCGCTGTCAGGCTCTGTTCTTCACTCTCTCCCCGGCCCTCCCCCATCGAGGGGGAGG

>NZ_AP014936|3|3|909305-909430|CRISPRCasFinder
TCACCCTCTCCCCGGCCCTCCCCCATCGAGGGGGAGG	AAGTGGAATGAAGGTGAGGGGGAAGAGTGATGTCGCTGTCAGGCTCTGTTCT
TCACTCTCTCCCCGGCCCTCCCCCATCGAGGGGGAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014936.1\|WP_096459308.1\|902245_902629_+\|type-II-toxin-antitoxin-system-death-on-curing-family-toxin	unknown	unknown	gnl\|CDD\|226180
NZ_AP014936.1\|WP_096459357.1\|915829_916444_+\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|275075
NZ_AP014936.1\|WP_096459320.1\|904582_904843_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014936.1\|WP_096459326.1\|906279_906681_+\|RNA-binding-protein	unknown	unknown	gnl\|CDD\|224109
NZ_AP014936.1\|WP_096459338.1\|910811_911108_-\|DUF1540-domain-containing-protein	unknown	unknown	unknown
NZ_AP014936.1\|WP_148665377.1\|912076_912793_+\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|181618
NZ_AP014936.1\|WP_096459347.1\|913264_913840_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014936.1\|WP_169923968.1\|906943_907300_-\|DUF3192-domain-containing-protein	unknown	unknown	gnl\|CDD\|378660
NZ_AP014936.1\|WP_096459360.1\|916571_918098_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378467
NZ_AP014936.1\|WP_096459341.1\|911309_911813_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014936.1\|WP_096459317.1\|903837_904458_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014936.1\|WP_096459314.1\|903207_903549_+\|alkylphosphonate-utilization-protein	unknown	unknown	gnl\|CDD\|225380
NZ_AP014936.1\|WP_096459311.1\|902660_903059_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014936.1\|WP_096459332.1\|907930_909175_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014936.1\|WP_096459350.1\|914169_915276_-\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|237999
NZ_AP014936.1\|WP_096459363.1\|918341_919043_+\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|237084
NZ_AP014936.1\|WP_148665376.1\|907717_907900_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014936.1\|WP_096459335.1\|909676_910615_+\|AEC-family-transporter	unknown	unknown	gnl\|CDD\|223751
NZ_AP014936.1\|WP_096459323.1\|905020_906283_+\|DUF445-domain-containing-protein	unknown	unknown	gnl\|CDD\|377281
NZ_AP014936.1\|WP_096459366.1\|919510_920224_+\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|307807

Protein	Function_ID	Function_description	E-value
NZ_AP014936.1\|WP_096459308.1\|902245_902629_+\|type-II-toxin-antitoxin-system-death-on-curing-family-toxin	gnl\|CDD\|226180	COG3654, Doc, Prophage maintenance system killer protein [General function prediction only].	3.02163e-26
NZ_AP014936.1\|WP_096459357.1\|915829_916444_+\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|275075	TIGR04239, GlpG_protein, rhomboid family protease GlpG. GlpG in E. coli is a rhomboid family intramembrane serine protease that has been extensively characterized as a proxy for rhomboid family proteases in animals. It efficiently cleaves eukaryote-derived model substrates. This multiple membrane-spanning protein excludes inappropriate substrates from access to its cleavage site, and shows activity against truncated versions, but not full-length versions, of the E. coli multidrug transporter MdfA. This finding suggests a housekeeping function in removing faulty proteins. In contrast, several eukaryotic rhomboid family proteases release peptide hormones for signaling functions, and the Shewanella and Vibrio protein rhombosortase appears to be part of a protein-sorting system, cleaving a C-terminal anchoring helix domain.	2.89869e-41
NZ_AP014936.1\|WP_096459326.1\|906279_906681_+\|RNA-binding-protein	gnl\|CDD\|224109	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis].	4.80143e-30
NZ_AP014936.1\|WP_096459350.1\|914169_915276_-\|diguanylate-cyclase	gnl\|CDD\|237999	cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels.	5.75353e-12
NZ_AP014936.1\|WP_148665377.1\|912076_912793_+\|OmpA-family-protein	gnl\|CDD\|181618	PRK09038, PRK09038, flagellar motor protein MotD; Reviewed.	9.37752e-48
NZ_AP014936.1\|WP_169923968.1\|906943_907300_-\|DUF3192-domain-containing-protein	gnl\|CDD\|378660	pfam11399, DUF3192, Protein of unknown function (DUF3192). Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed.	4.77164e-19
NZ_AP014936.1\|WP_096459366.1\|919510_920224_+\|M48-family-metallopeptidase	gnl\|CDD\|307807	pfam01863, DUF45, Protein of unknown function DUF45. This protein has no known function. Members are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C-terminus being the most conserved region, containing three conserved histidines. This motif is similar to that found in Zinc proteases, suggesting that this family may also be proteases.	1.05973e-52
NZ_AP014936.1\|WP_096459314.1\|903207_903549_+\|alkylphosphonate-utilization-protein	gnl\|CDD\|225380	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism].	8.33458e-64
NZ_AP014936.1\|WP_096459360.1\|916571_918098_+\|hypothetical-protein	gnl\|CDD\|378467	pfam10670, DUF4198, Domain of unknown function (DUF4198). This family was previously missannotated in Pfam as NikM.	0.00260956
NZ_AP014936.1\|WP_096459363.1\|918341_919043_+\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|237084	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator.	9.16881e-106
NZ_AP014936.1\|WP_096459335.1\|909676_910615_+\|AEC-family-transporter	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	2.50621e-15
NZ_AP014936.1\|WP_096459323.1\|905020_906283_+\|DUF445-domain-containing-protein	gnl\|CDD\|377281	pfam04286, DUF445, Protein of unknown function (DUF445). Predicted to be a membrane protein.	2.27164e-123

>NZ_AP014936.1|WP_096459332.1|907930_909175_+|hypothetical-protein
MHYTADHSVTPAADALDPSRFPRTYRVSTRNRILFLLLGGVALAGGLAGMWYFGTGHETKTMTEAVALAAVSFGFVLLGGALVLYVLTTKVVLRADAIELHDFMRTRTLRRDDIAGWRVLQAQHVSVLTLESKRAGVKPLKITQILKTDALLDAWLAGLSDLDARERERSTAEIAASRDLGRTSEERLARLAVARKVANALTGIAVVVSAWGFLLPEPYELVIASLAALPLVAVALAARAGSLYQIAGHKNDARASLALVFIGPGMVLGLRAILDIELLEWGPALAATVVAAAALTLVLAATDRQMRGRRWELLAMLFLSLFYAYGGVVEANALLDRSAPQVYEAKVVDKHKSSGKTTQYYLRLTPWGPRATEEDVSVTRDLYESSSAGRTMCVVYRAGALEIPWFTVYPCRGS
>NZ_AP014936.1|WP_148665376.1|907717_907900_-|hypothetical-protein
MLDPVIEPGATGRAWNGISERSGQDGIDRNRGMKDGDNRYSNFLSSRFALCIASGSRFSA
>NZ_AP014936.1|WP_169923968.1|906943_907300_-|DUF3192-domain-containing-protein
MAITAALAACGTFYIDPAEPFREANKQNLAKLSVGMAKTTAMELMGTEPSRGVFMWIDNPHRSEWITGNDGKPYEVLYYYTDMKQRDDKITDDELTPLIFQDGRLVGWGKDALQRLGS
>NZ_AP014936.1|WP_096459326.1|906279_906681_+|RNA-binding-protein
MTTDANRAEARVDKWLWTARFFKTRSLAAEAVAGGKVRVNGERAKPARTVRPGDELRIHFGPYEHVIRVRGVAARRGPATEAALLYEESDESRAARKELAARLAAERVYSRAAKGRPSKKERRELIRLKQGDS
>NZ_AP014936.1|WP_096459323.1|905020_906283_+|DUF445-domain-containing-protein
MASVPFSVDDPEKQARLNSMKRRATGLLLLAVAVFLGAVAYEGAYPGLGYVRAAAEAAVVGGLAHWFAVTALFRHPLGIPIPHTAIVPRRKDRIGGALGNFVQRNFLSPELIRARLGELRLAERVLRWVAEPEHAQRVAQSVARGLAGGARVLKDEDVQALIDRAVAARVRRTPLAPLVGNLLAHLTADNRHEQLLDEALRILGRTVEEHEAVIRERVRAESPWWIPEGIDDRIHDKIVTGIERTLEQVGQDREHPLRLRFDAALARFIERLRTDPELAGRAEAIKEEMLAHPAVRQFSAALWDDVKQSLIRYGEQHEAGAGAGPIEQGLRSLADAVLADPELIAKLDRWLIEAIAGLVEQYRTDVGKFISDTVAAWDPEATSRKIELQIGRDLQFVRINGTVVGALVGLALYTLSRFLA
>NZ_AP014936.1|WP_096459320.1|904582_904843_-|hypothetical-protein
MSADLLDAVNAALAGKWDRAHAIVQRDEDDPFACWLHAVLHKIEGDAGNSRYWYARTGHSYGEFADAQQELAAIKRELESGRRDER
>NZ_AP014936.1|WP_096459317.1|903837_904458_+|hypothetical-protein
MRTVAPWLVAGVALVAVVVMLAKTADRDEVVPIPMSSLPGPGPTGTPPAGGPVDLSSMTPREAADRLFNRIMTASERGDREEALRFVPMALMAYDELGTLDNDAHYHVALIQLVAGDTAKVRAHIESLRQAVPGHLLASMLEHRIAEREGKPDGMARAYRAFLAAYDAEIAAGRTEYQDHRGLIDRFRDAAAQAAARPAAARAPGK
>NZ_AP014936.1|WP_096459314.1|903207_903549_+|alkylphosphonate-utilization-protein
MSNLPKCPKCGSQYTYEDRDMFVCPECAHEWSKEAAIDAADETLVVKDAHGNVLQDGDSVTVIKDLKVKGSSSVVKVGTKVKNIRLVEGDHNIDCRIDGIGPMKLKSEFVKKV
>NZ_AP014936.1|WP_096459311.1|902660_903059_+|hypothetical-protein
MKTMITLHGKPVQVELSDAAERELKKRTAPLYAEVQLIFGCMIAKRVWFSDEAVEHAVVVTPNFLVWFRPVRYAKSCSFDDIDNGAEASDYPMVADRTRFVPDALTIHYRAGKWIGDFTFSLDLARARHSHP
>NZ_AP014936.1|WP_096459308.1|902245_902629_+|type-II-toxin-antitoxin-system-death-on-curing-family-toxin
MSRPKFIGIEAVLAIHYDQVNTFGGAHGLRDQGLLESAFGQAQQTFADTNDIHEAAAQYAVSLARNHPFVDGNKRTAADCMLTFLVLNGFEPTMTNEQLFEWTLKVAIEKLTRTELARSLRGHSRRR
>NZ_AP014936.1|WP_096459335.1|909676_910615_+|AEC-family-transporter
MQGSVLTILFFLALGIGWRFVSPQGIAAASLQRHLQVLAHYVILPVAVFFILAKLPMNAAAMKILWYVLGTSAITLAVAWVWLHYSKMAPKTKGALLIAAGFGNVLFLGVPLNKALVGDWSMRIAVEYGLLANVLLLYTAGAILSRSFTEAGAPRFKGLASEVLAQRFWLREPLLWAALAGLFANFTSMEFPWFASTQAAIYELLLPLLLLSTALAVSWSDAWKTQFVTVLPAAAIQLILAPLAMWAMVSLFGSVGAKGTQALMLNSMLPTALLGFAACERHKLDTGTYALAFSLTSALALVTVPLWFALLF
>NZ_AP014936.1|WP_096459338.1|910811_911108_-|DUF1540-domain-containing-protein
MRLTIDMPLVAGCTIYACAYNVDDACHARAITIGDGVHPGCDTFLGDVRHTRDTSHSAGVGACKVTGCTHNDDYECTAPEIKVGHVGRDINCLTFSPR
>NZ_AP014936.1|WP_096459341.1|911309_911813_+|hypothetical-protein
MKSVLRAFAVVHGLMAILFACAALVLVAIAARIGWVALTGDFDRSAAQDVIEAVGLLAAAVVALQIAQTIAEEEVVRGAHISAPTRVRRFLSRFFVVVIVALAIEGLVATFKAIHEEPEQLLYAASIVLSTGALLAGWGVFVRLNRYAEELEPEAMQRAKREDKKLE
>NZ_AP014936.1|WP_148665377.1|912076_912793_+|OmpA-family-protein
MNRFLLTSAVVAATLAMGGCVSSGKYEQLEADKNQVEKEKGTLQEQTAALEKEKSLLQEQIAALEKEKAALEANSQQRQSQYDALVKKLSAEVEQGQLQVRQYKNMLSVDVAEKIFFDSGRAELKESGKEVLAKVGEALKSYEDKVIRVVGYTDNVPIAKSMQRIYPTNWELSVARATNVVRFLQDAGVPPERMVAAGRGEFSPVAPNDTAEGRQKNRRIEIMLIDEKAAEELTTAQQ
>NZ_AP014936.1|WP_096459347.1|913264_913840_-|hypothetical-protein
MQERNVRDEWPVLIAAMRNAMERQLSPRGQAVQVLARHWMDLLRRTAVEAPELLHEYDGTRRLEPGCPSTGGIDIEMLDFLSAALWAKHLTPDESNRLRTNGPRQREWPRVLYALREEMNRGASAASPAVQALLRQWESGLDELTAGDLELRHKWMTAVRSDPALLTGSGVDTRLHNYLRRARLAKEGWAA
>NZ_AP014936.1|WP_096459350.1|914169_915276_-|diguanylate-cyclase
MTDSSSPPPKPGLSLEGIEVVELSDVDLEFDVEEVFGKRAAPPPVLELDSTRTEPATADDLRAVELFQGLESKDIDALAPRCQSIHAVPGYVLLAPGRIDNKVYFVIEGQLRLYARTSDKRPTAVADIGHSTGLRSALAMQPAEHAVIATEVSHVLAVDVSAIDEHVKRSHTFARNYAALLARYVRGDHCLHVGGRPPGGTARESYVDELTLLHNQHWLDTVYPRLVTRCRLGNKPLAVVGFAIDQLDDVVKANGIGPGLRVLEAVGHWLLDQTRPTDLLAVGQNRYLYAFLPDCDLDAARQLADRLKVQARTLPVTLAPGKPAMAITLALGIAELEKGMRDKEFLVRTEALIRKSVKLGGNCVSETQ
>NZ_AP014936.1|WP_096459357.1|915829_916444_+|rhomboid-family-intramembrane-serine-protease
MANDTARLGSLPPLTVALIVVSGLLALHSNLGASRAALAPFLFTPPGGDLLAGLRAGEYWRLLTPIFIHFGPLHLLFNMMWLWDLGGLLERRRGVVFLAGFVAAVGIAANLAEYLVSGARIFGGMSGVVYGLLGYFWMQGKYNPRFGYVLHKQVVVTMLAWYVLCWTGLLGPIANWAHTAGLVIGVVWGYLERGGREPAPDAGT
>NZ_AP014936.1|WP_096459360.1|916571_918098_+|hypothetical-protein
MKRRTLAVALSALTLVGGHFYNRRWDRAVLFFVAFVLWGLGVYASLTFQMNRLMDATGGAAFFDVFQGHVTAFGVGSLLLWLASLIVAFVDGGRTAEAPLARWTGSGVAAAVGLSIVSSLALALAAATSGTVRVGHEPYETTAAPEPVRHAPRHFSHYVYLGRSTPSGSQAPAPPAGDGYLRGRFVFEDRPAAGVELTLTLNGKYETGRLTTDENGEFTVRVPSGDWFVNMLVTHAWSEKPEEGEYMIVTGHEPKLVGDDWNEHHWLERDGIRVEVGGQPKEPQLTFTIRRRVSVNWPEPGTQATRTSVDQGVVTWEPYPGADAYLVRITELEREGRSTTFHGVAAKKVAGDTRFPLARLQALPSREGEKEYQVSVSAFAKDGSLLSESNNRLDGRLFVLADAKQFLRDSDRIPGSDAFSARELEEAHDNNRRIEAVAVLLKDGLVGEAERLLGKVKGKTDPGKKAAVTGYLMASRGRCAEAKRLFAQALSEGGRTCVPQHYRAGCGE
>NZ_AP014936.1|WP_096459363.1|918341_919043_+|YebC/PmpR-family-DNA-binding-transcriptional-regulator
MGAQWKTKIKETTAAAKGRIFTKLAKEIMVAARGGPDPNQNSKLRMAVEQAKKASMPKDNIERAIKKGAGLLDEQVSYEKLTYEGFAPHRVPVIVECLTDNANRTASNIRMLFRKGQLGASGSVSWDFDYVGMIEATPESPGADPEVAAIEAGARDLEPAENGATLFLTEPSDLDAVARALPAHGFVVQSAQLGYRPKNPVTLGAAERAEVEAFLEAIDADDDVQNVYPGLAD
>NZ_AP014936.1|WP_096459366.1|919510_920224_+|M48-family-metallopeptidase
MTETPFDYRVRVSARSRRVCLRVTVEQGLEVVVPRGYDCGLLSDLLKRKERWIRGALERIEGYRKALGFGATWAPPPRIDLPALDRSWQVAAHATAANGVTVREAEPGFLRLSGPIDDERLARAALRRWLVRQAQAHLAPRLEALSRSTGLRHRRVAFRCQKTRWGSCSRDGGISLNARLLFLPPELVDYILIHELCHTAHMNHSKRFWALVARHCPDFRIHDRRLHEMGKHVPRWG

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Crispr_ID: NZ_AP014936_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP014936_4

1253009-1253157

Orphan

Consensus_repeat	Method
CGCTCGGTTGGACCCCTCTCCCTGTCCCTCTCCCGCGAGGGGAGAGGGGACCAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP014936_4

>merge|NZ_AP014936|4|1253009-1253157|CRISPRCasFinder
CGCTCGGTTGGACCCCTCTCCCTGTCCCTCTCCCGCGAGGGGAGAGGGGACCAACAAACGGGCGTCACTCAAGAGTTCGTTGACTCTCCTCCCCTCGCTCGGTTGGACCCTCTCCCTGTCCCTCTCCCGCGAGGGGAGAGGGGACCAAC

>NZ_AP014936|4|4|1253009-1253157|CRISPRCasFinder
CGCTCGGTTGGACCCCTCTCCCTGTCCCTCTCCCGCGAGGGGAGAGGGGACCAAC	AAACGGGCGTCACTCAAGAGTTCGTTGACTCTCCTCCCC
TCGCTCGGTTGGACCCTCTCCCTGTCCCTCTCCCGCGAGGGGAGAGGGGACCAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014936.1\|WP_096460299.1\|1255294_1255663_-\|DUF1820-family-protein	unknown	unknown	gnl\|CDD\|370154
NZ_AP014936.1\|WP_096460288.1\|1250613_1251843_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380637
NZ_AP014936.1\|WP_096460279.1\|1248018_1248750_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213186
NZ_AP014936.1\|WP_096460290.1\|1251976_1252585_+\|DUF479-domain-containing-protein	unknown	unknown	gnl\|CDD\|225666
NZ_AP014936.1\|WP_096462843.1\|1255703_1257308_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|283599
NZ_AP014936.1\|WP_096460293.1\|1252630_1252948_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014936.1\|WP_096460277.1\|1247327_1248032_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223487
NZ_AP014936.1\|WP_096460305.1\|1259755_1259977_-\|SlyX-family-protein	unknown	unknown	gnl\|CDD\|377222
NZ_AP014936.1\|WP_096460268.1\|1244272_1245400_+\|YbdK-family-carboxylate-amine-ligase	unknown	unknown	gnl\|CDD\|237408
NZ_AP014936.1\|WP_096460314.1\|1262544_1263015_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380394
NZ_AP014936.1\|WP_096460282.1\|1248736_1249705_-\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|119323
NZ_AP014936.1\|WP_096460308.1\|1261529_1262111_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014936.1\|WP_096460296.1\|1253648_1255202_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239559
NZ_AP014936.1\|WP_096460272.1\|1245634_1247155_-\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143404
NZ_AP014936.1\|WP_096460302.1\|1257389_1259576_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_AP014936.1\|WP_096460311.1\|1262186_1262516_-\|disulfide-bond-formation-protein-B	unknown	unknown	gnl\|CDD\|376848
NZ_AP014936.1\|WP_096460318.1\|1263744_1264116_+\|MGMT-family-protein	unknown	unknown	gnl\|CDD\|226219
NZ_AP014936.1\|WP_096460285.1\|1249701_1250568_-\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|119324
NZ_AP014936.1\|WP_096460316.1\|1263162_1263627_+\|NfeD-family-protein	unknown	unknown	gnl\|CDD\|376684
NZ_AP014936.1\|WP_096460265.1\|1243097_1244273_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|349882

Protein	Function_ID	Function_description	E-value
NZ_AP014936.1\|WP_096460305.1\|1259755_1259977_-\|SlyX-family-protein	gnl\|CDD\|377222	pfam04102, SlyX, SlyX. The SlyX protein has no known function. It is short less than 80 amino acids and is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C-terminus. The protein may be a coiled-coil structure.	3.77458e-23
NZ_AP014936.1\|WP_096460288.1\|1250613_1251843_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|380637	cd19982, PBP1_ABC_ligand_binding-like, type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, their ligand specificity has not been determined experimentally.	3.0836e-146
NZ_AP014936.1\|WP_096460279.1\|1248018_1248750_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213186	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system. The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).	1.41248e-116
NZ_AP014936.1\|WP_096460290.1\|1251976_1252585_+\|DUF479-domain-containing-protein	gnl\|CDD\|225666	COG3124, COG3124, Uncharacterized protein conserved in bacteria [Function unknown].	8.09288e-55
NZ_AP014936.1\|WP_096462843.1\|1255703_1257308_-\|MFS-transporter	gnl\|CDD\|283599	pfam05977, MFS_3, Transmembrane secretion effector. This is a family of transport proteins. Members of this family include a protein responsible for the secretion of the ferric chelator, enterobactin, and a protein involved in antibiotic resistance.	2.77144e-180
NZ_AP014936.1\|WP_096460311.1\|1262186_1262516_-\|disulfide-bond-formation-protein-B	gnl\|CDD\|376848	pfam02600, DsbB, Disulfide bond formation protein DsbB. This family consists of disulfide bond formation protein DsbB from bacteria. The DsbB protein oxidizes the periplasmic protein DsbA which in turn oxidizes cysteines in other periplasmic proteins in order to make disulfide bonds. DsbB acts as a redox potential transducer across the cytoplasmic membrane and is an integral membrane protein. DsbB posses six cysteines four of which are necessary for it proper function in vivo.	2.8451e-15
NZ_AP014936.1\|WP_096460277.1\|1247327_1248032_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223487	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism].	7.82248e-121
NZ_AP014936.1\|WP_096460268.1\|1244272_1245400_+\|YbdK-family-carboxylate-amine-ligase	gnl\|CDD\|237408	PRK13517, PRK13517, glutamate--cysteine ligase.	1.61231e-89
NZ_AP014936.1\|WP_096460314.1\|1262544_1263015_+\|cupin-domain-containing-protein	gnl\|CDD\|380394	cd06989, cupin_DRT102, Arabidopsis thaliana DRT102 and related proteins, cupin domain. This family includes bacterial and eukaryotic proteins homologous to DNA-damage-repair/toleration protein DRT102 found in Arabidopsis thaliana. DRT102 may be involved in DNA repair from UV damage. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	7.17925e-17
NZ_AP014936.1\|WP_096460282.1\|1248736_1249705_-\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|119323	cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.	5.64476e-79
NZ_AP014936.1\|WP_096460318.1\|1263744_1264116_+\|MGMT-family-protein	gnl\|CDD\|226219	COG3695, COG3695, Predicted methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair].	3.45126e-33
NZ_AP014936.1\|WP_096460296.1\|1253648_1255202_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|239559	cd03477, Rieske_YhfW_C, YhfW family, C-terminal Rieske domain; YhfW is a protein of unknown function with an N-terminal DadA-like (glycine/D-amino acid dehydrogenase) domain and a C-terminal Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. It is commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. YhfW is found in bacteria, some eukaryotes and archaea.	5.4246e-39
NZ_AP014936.1\|WP_096460272.1\|1245634_1247155_-\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	gnl\|CDD\|143404	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.	0
NZ_AP014936.1\|WP_096460302.1\|1257389_1259576_-\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.21492e-59
NZ_AP014936.1\|WP_096460285.1\|1249701_1250568_-\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|119324	cd06582, TM_PBP1_LivH_like, Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.	1.46641e-76
NZ_AP014936.1\|WP_096460299.1\|1255294_1255663_-\|DUF1820-family-protein	gnl\|CDD\|370154	pfam08850, DUF1820, Domain of unknown function (DUF1820). This family includes small functionally uncharacterized proteins around 100 amino acids in length.	1.83548e-49
NZ_AP014936.1\|WP_096460316.1\|1263162_1263627_+\|NfeD-family-protein	gnl\|CDD\|376684	pfam01957, NfeD, NfeD-like C-terminal, partner-binding. NfeD-like proteins are widely distributed throughout prokaryotes and are frequently associated with genes encoding stomatin-like proteins (slipins). There appear to be three major groups: an ancestral group with only an N-terminal serine protease domain and this C-terminal beta sheet-rich domain which is structurally very similar to the OB-fold domain, associated with its neighboring slipin cluster; a second major group with an additional middle, membrane-spanning domain, associated in some species with eoslipin and in others with yqfA; a final 'artificial' group which unites truncated forms lacking the protease region and associated with their ancestral gene partner, either yqfA or eoslipin. This NefD, C-terminal, domain appears to be the major one for relating to the associated protein. NfeD homologs are clearly reliant on their conserved gene neighbor which is assumed to be necessary for function, either through direct physical interaction or by functioning in the same pathway, possibly involve with lipid-rafts.	9.77648e-08
NZ_AP014936.1\|WP_096460265.1\|1243097_1244273_+\|amidohydrolase	gnl\|CDD\|349882	cd03886, M20_Acy1, M20 Peptidase Aminoacylase 1 family. Peptidase M20 family, Aminoacylase 1 (ACY1; hippuricase; acylase I; amido acid deacylase; IAA-amino acid hydrolase; dehydropeptidase II; N-acyl-L-amino-acid amidohydrolase; EC 3.5.1.14) subfamily. ACY1 is the most abundant of the aminoacylases, a class of zinc binding homodimeric enzymes involved in the hydrolysis of N-acetylated proteins. It is encoded by the aminoacylase 1 gene (Acy1) on chromosome 3p21 that comprises 15 exons. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in the protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity; substrates include indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. ACY1 breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine). ACY1 appears to physically interact with Sphingosine kinase type 1 (SphK1) and may influence its physiological functions; SphK1 and its product sphingosine-1-phosphate have been shown to promote cell growth and inhibit apoptosis of tumor cells. Strong expression of the human gene and its mouse ortholog Acy1 in brain, liver, and kidney, suggest a role of the enzyme in amino acid metabolism of these organs. Defects in ACY1 are the cause of aminoacylase-1 deficiency (ACY1D), resulting in a metabolic disorder manifesting encephalopathy and psychomotor delay.	4.35863e-139

>NZ_AP014936.1|WP_096460293.1|1252630_1252948_+|hypothetical-protein
MPEQITKYPDTTLQVLKGAGARCGEGADQNILKQCPAERFCALPTGEMCIYGVAEIPQMTQVTTAEVAQVVCPPNTLLPGGEPVAAGIALAAGLVAGVSWRRRRS
>NZ_AP014936.1|WP_096460290.1|1251976_1252585_+|DUF479-domain-containing-protein
MNFLAHIYLSNGTPESVLGAVLGDFVKGRLHDRFTPGVREAIRIHRAIDCYTDAHPVVRESRRLVSGPRRRYAPILIDLFYDHLLARDWERYSAVPLADFTRSAYAVLGAHAHAFPGPFQRVVPRMAAEDWLSAYREPEGIERALAGLSRRARRGAPLIGGVEELTRNYAALADQFRAFFAELRGQVATWNRNDECSMLNAE
>NZ_AP014936.1|WP_096460288.1|1250613_1251843_-|ABC-transporter-substrate-binding-protein
MDRRFSIAALVAFLFFITGTAAAQTLKIGAPQPMTGPDAPFGDKFQKAYSMAVEEINAAGGVNGKQIEVIIEDHQAKNPLAATVAERLIQQREVLILTGGRASGQAVEIASIAQRLKTPYLVDHPSADIITAKGFEWVFRNNPTGSIYPQAFNKFISEAPGAMPKSAAVIYDNTVFGKTIANSAMTFLKSKNVNIVNDEAYPVNTLDFKPIMTKVRGNNPDYVLMVAVATTDAILMTRHAKEMGLKPRAFVGFGGGFGVEDFAKQLGPLSENVFSSAAWSGNPNDPKVKAFYEKFNKKYGIYPKEHEVEGYAAIYIIADAMKRAKLTGDVAKDRDAIRRALLKTDMETVFGKVKFGNYKGPLGDPYTNQNVNSPEHSVLAQWRKGKLLNVYPKANAETDVVFPDPASKK
>NZ_AP014936.1|WP_096460285.1|1249701_1250568_-|branched-chain-amino-acid-ABC-transporter-permease
MEIAIQSLVSGLLTGSLYAMMAVGLTIIFGVMRIINLAHGDMVMLGMFGAFWAHSLWNVDPFLSGLLWVPLLFLGGMLVYRFLLRPIMPGGELNTLLYTAGLSLLIANVALFLWTGDYRTVNLPYALEPFRPFGISIPVPIAIAFGLAALITAGLYGFLLRTDLGRAIRATSQSPEAAALMGIDVNRISMITFGLGTALAGAAGVLLVPSLYLYPTVGEILIVKSFVIVVLGGLGSVPGAIAGGLLLGLVESFGAVYVSVAYKDTIGFIIFLLVLLFRPQGLFGVGRA
>NZ_AP014936.1|WP_096460282.1|1248736_1249705_-|branched-chain-amino-acid-ABC-transporter-permease
MNRIAAGVAIVFLLALPWLTDNQFLLHLAIIVLMWTLMGLSWNLLGGYAGQVSFGHAAFFGVGAYTTMILYLKVGLAPWYGIPLGGVVAALFSLPIGYLCFRLRGPYFALSTLAVAEITRLVALNWETLTAGPVGLLITTLPDVSFLGRPVDWESKEPFFYIIALLAVSGMLATHYMMRGRLGAYLVAIREDEDAAESVGIDTTRAKALTLAASAFFTGLAGGFYGMYFRYVDPDAVFPIAISIETVFIAVVGGLGTVVGPIVGAVFLTTVAETFRERFVVGHLIFYGLFMMLVIRFMPEGIWGRARRLYGRFRKGGSRGAA
>NZ_AP014936.1|WP_096460279.1|1248018_1248750_-|ABC-transporter-ATP-binding-protein
MALLEVENLSRHFGGLRAVANLSFAVRPGEILGLIGPNGAGKTTVFNLVTGFLPPSGGDVRLDGESLVGLKPHAVARRGVARTFQIVKPFPHLSARENAALGGMARLGSRRAAEDEAMRVLEQVGLAAKADVPAGEFTLADQKRLEIARALATGPKLLLLDEPMGGLNPREVGGACELVERIRESGVTVVLVEHIMRAIMRISHRVVVMNQGEKIAEGAPAEVVQDPAVIAAYFGKRVANARG
>NZ_AP014936.1|WP_096460277.1|1247327_1248032_-|ABC-transporter-ATP-binding-protein
MLEVEHLEVAYGKIQALWDVSFEVREHEIVALVGANGAGKSTTLKTISGLLRPQGGTMRLGDRRLETLTPPEIVELGVVHVPEGRKLFPDMTVRENLLLGGYARAARPHRERRLAQAYEIFPRLAERADQLAGTLSGGEQQMVAIGRGLMAGPNILMLDEPSLGLAPIMVEEMFRVIEEINQRGVTVLLVEQNTEHALDLAHRGYVLESGHVVLSGTGKELLANSKVREAYLGL
>NZ_AP014936.1|WP_096460272.1|1245634_1247155_-|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase
MSSVKETLPVELLSHWINGERVAGTGKRSGEVYNPATGEVIRRVPFADEADVDRAVAAARAAFPAWRDTTPLRRARILSRYRELVEANRRELTALISEEHGKTLLDAAGSLQRGIEVIEFASGAPHLLKGEHAEDVGRGVDSHSVLQPVGVCAGVSPFNFPAMVPLWMYPVAVACGNTFVLKPSEKVPSTAFRLAELFTEAGLPAGVFNVLHGDREAVDALLAHPDIAAISSVGSTPVAKHIYETAARNGKRVQALGGAKNHAVVMPDADMNFTADALVGAAYGSAGERCMAISAVVAVGDAADPLVALLEEKAAKLKVGPGDQDGIDMGPLVTAAHRDRVKGYIDTGEREGAQLVLDGRGLKVAGHERGFFLGPTLFDRVQPGMTIYQDEIFGPVLIVLRVPTLDEAIALVNRNPYANGTAIFTRSGAAARHFEHDIQVGMVGVNIPIPVPMAFFSFGGWKASLFGDLHMHGMEGVQFYTRTKVVTTRWPASDEAKAHGFAMPTH
>NZ_AP014936.1|WP_096460268.1|1244272_1245400_+|YbdK-family-carboxylate-amine-ligase
MEFRPSSPDTIGMELELQLLDAGTLDLADGILPLMRLYPSSVYVKPEVIQNTVEIASKVCGGVAELEAHVRDIAAGLRTRCAGLGMRLCGAGSHSFSVRPGLITPQPRYLAMERRYGHLSHAQITFATHVHVGMRSGDETVSLMHRMKPYLPLLIAVSASSPFWQGLDTGFASYRHRILAVTRSYGVPPSFVRWEDFCRFFETTRRAGLFGSVHDIHWDLRPRPHIGTLEVRAMDAQATVGEAAALAAFVRALVEGLRSGELSEAGLPQPLPWWIEKENHFAASRLGLAARYIADEAGTVRDLGEVWHAVYAALVPVAARLGEGVYLERLRAQIEAGPGYVAQRREYERTASLNDVVARLVDRLEREPRGEATTA
>NZ_AP014936.1|WP_096460265.1|1243097_1244273_+|amidohydrolase
MQTARNVDAAYPRMVELRRAFHREPELAFEEARTARAIMAELDRLGIPHEYGGVGGGVVGRLAGAATGPTVALRAEMDALPGKETTGLPFASIHPERVHACGHDAHMAMVLGAAALLAAAPPPGKVLFVFQPAEERGGGSRVILRSGALVGARAIFGGHVTHHYRVGEIMAVPGVITAQSDRFLVKIQGKGGHGARPHEAVDAAVVAGVLITAIQTLVSREINPVYPSVVTIGKVQAGTAANVIAEEATLEGTIRTTRADVRAHLHHGMQRMGRAIADLHNARVTVHITEGYPPVMNSPREAEIAQRAARRVVGEAGLAAMDYPSMGAEDFAFYLHELPGCYVRFGARIKEDEYIPLHSPAFDVNEEVLKVGAAFFEQVTREALAEYARGG
>NZ_AP014936.1|WP_096460296.1|1253648_1255202_-|FAD-dependent-oxidoreductase
MNESLWHGTAHAAGFPALREDLEVDVAIVGAGITGLTTAMLLADSGLEVVVLEAGGVGMGTTGHSTGNLYATVDRRLHAIEQKWDREVMRAVAHSRMEAIDLVEQTVRRYGLDCDFARRPFFLFASEPNRPQVEAIEREHRAAIQADLNARLVDALPLPYPVARALVIEGQAQFHPLNYVRALARHLAEDGCRICENTRATAIDDGRGLVQTETGTVQAHRIVLATHTPKGIYAVQSAMEVYREYGVAVRLQSGSYPEGIYWNTSTRHSIRSYRDGDESYLIAIGGHHKVGHEERTDLCYEALDKHVRERFDVARSVYRWSAQNYRTADGLPYIGRSSGADRTYIATGFGADGLVYGTLAAAIIAEDLQGRESRWSDLYDASRFTPIKSAKGFMRESAGVAMDLARDWLKRHPKAFEEIRTGEGRVLEIEGERLAVFRDFDRRFIAVSPVCTHMGCIVHWNNAEKSWDCPCHGSRFSVEGAVIEGPALAPLEQQSLKETAESVAPAEDEAPRPPAAH
>NZ_AP014936.1|WP_096460299.1|1255294_1255663_-|DUF1820-family-protein
MRPVRRNTVAKKRIYKVVFVNQGKVYEVYARRVSQGELYGFVQIEGFIFGEKSAVVIDPSEERLKAEFEGVSVSHVPLHSVIRIDEVEKQGTAKIVSLSGKMEDVIPFPGHLPPGRPKKESD
>NZ_AP014936.1|WP_096462843.1|1255703_1257308_-|MFS-transporter
MSAPSHSASSHAPALAPLRVPLFRALWLATLGSNMGTWIQDVGAAWLMTSLAPSPAMVALVRAASAAPMFLLALPAGALADVLDSRRLLLFTQSWMLAAAAALAVFAFADLMTPGWLLGLTFALALGTALNAPAWQSIVAELVPREQLPSAIALNSVSINLARSIGPAVGGLLIAAMGPAATFALNAVSFFGVILVLYGWRRTPQPSVLPAERMWGAMRAGLRYVRHSPAVLAVLARSALFTVFASALLALLPAIARFEFGRGPAGYGVLLGFFGVGAVSAAALLPRLRAKLTAQQLVTLGEAVFAVALLLLAWVPFIALADLIVFFAGGAWLTLLSTFNASILALVPGWVRGRALSVSILVFFGGMTAGSALWGYVAVLSGIPIALTISAVGALIGLYFTRRLHLHSGEALDLSPSVHWPAPTVVKAVPPEHGPVVVTVEYLIDPERLRHFRRVMKRVQRIRRRDGAISWGLLADVADPARYTETFVVESWIEHLRQHERVTVTDRAVLDKARSFHQGTEPPRVTHFVVETLP
>NZ_AP014936.1|WP_096460302.1|1257389_1259576_-|serine/threonine-protein-kinase
MPAPSNKSASAALPVGYRLGEYAIEAVLGQGGFGITYRARDTRLGAQVAIKEYFPQVYAVRTEKSTIVPGPGADLENYRWGLTEFLKEAQALAKFKHPHIVRVLRFLEANGTAYTIMEYEEGQTLSSYLAQHGGVLDEASLLRVFLPVLSGLEAVHEAGLLHLDIKPDNIYLRANEQPMLIDFGSSRQMRGEASQKITLTPGYCALEQYPGHGEVGPWSDVYGIGAALYRCMTGKGPVDALERHHTLARTHADALRPATAFERPFYATHIRQCVDAALKLAAPERPGSAFVLQQGLMGKDMAQVGKRRPDAVFRAGTGYIGAVLSAPVEEKKSRRPSRPLLERLIALTVVAATFAIITPMTLINLGRMTEAELYDWIEQTRIEAVARVRDAGDWIDEKVFGVKPLPKPTTVAAAPRAAPAPAEPVVAPEMLRPPFPLGEPPAIEIAVPGEPLHAIGFLQHGLVLATASDAGLVQLWDVQTGAVRTTLPAVAHGPGALGVFPSSQWLAAADRGSGIAVFDPLGNRDGLLPGEPDDRVAVIAVSAAGRLLAAAEDNGQLAVWELSQRRRLHELASGKSRPRLLAFSPDERLLLAGDDAGGIAAWDVADGVLVSYRRVHEKPVTAMAFTPDGRLLAVGAKDGTVRFWTAQDDAPGRVHIAGSSPVEHLSFSRDGLWLLAASDDGAIHVWNVDTGEPAGDATAGGGLRAFAATADGKLLAAAGDDNIVRIWK
>NZ_AP014936.1|WP_096460305.1|1259755_1259977_-|SlyX-family-protein
MSDKPDFEARVTELEMKVAFQEQTIETLNGVVTELRDEIDRLIREVEALKVQLRAVAPSLVADRSDEKPPPHY
>NZ_AP014936.1|WP_096460308.1|1261529_1262111_+|hypothetical-protein
MNSAITWLQSAPPGAITLLTAIIGALVAVLVVVLTQWILGRRARTELLTSKLEELYLLLNQASSENVDRYEKLVVHLYRAPEETKPLPLDRSTYSLDLHKKIIMYVQLYFPHLKPTHVRMFQSNSAITDILYRAGTGEKPTESEIHAAFGSYGDYLRNMEDEIIQNRAILVKDAVLPRRYKVSDIHVPMPAQR
>NZ_AP014936.1|WP_096460311.1|1262186_1262516_-|disulfide-bond-formation-protein-B
MSSHAQSIRHECRSKVSQNKSVTFFPVVAIRQESIIIFAKPGGCSMAISPEEKLLNALPLAQWWPSMFEAAGDCASVTWRFLSLSIPEWSVIWFVMLAAAGVYVGLAKS
>NZ_AP014936.1|WP_096460314.1|1262544_1263015_+|cupin-domain-containing-protein
MVSTFRISALLLSGLFSALALAEAQSQERAFALTPDDPALKWGSCPEFMPKGCEIAVLNGDPSQPNADIFFKVPGGSAISRHWHTSPERMVLVSGELGVTYDEQETAILKPGMYAYGPAKLPHKAYCAEGAPCVLFIAFESPVDAVPTESAAKSSQ
>NZ_AP014936.1|WP_096460316.1|1263162_1263627_+|NfeD-family-protein
MSDRSVFDVVLTAQAIGIASMIDPLEKRRTGRIASAVALGVVFPLLVLAMLWPDVGLITVLLVATAGALLAFLADSKLHTLSPREEMIGREGVVAYLFRRDANGVYLGNVQIGTESWTARTTPSNAPRLTAGRKVRVTGIDGLVLEVEPLDKRE
>NZ_AP014936.1|WP_096460318.1|1263744_1264116_+|MGMT-family-protein
MVNVKAASLDVTTGSPSKHARILAVVRRIPRGRVATYGQIAGLAGLPGHARLVGYALHSLPEGSTTPWHRVINARGCISPRSDGSGHDRLQRVLLERESVRFSDEGVVSLKCFQWRPKTRSIF

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Crispr_ID: NZ_AP014936_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP014936_5

1446755-1446845

Orphan

Consensus_repeat	Method
TCTCACCAACTCCCCCTCTCCCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP014936_5

>merge|NZ_AP014936|5|1446755-1446845|CRISPRCasFinder
TCTCACCAACTCCCCCTCTCCCGCTTGCGGGAGAGGGATGGGGTGAGGGCAACTGGTTCGAATGGACTCCCACCAACTCCCCCTCTCCCGC

>NZ_AP014936|5|5|1446755-1446845|CRISPRCasFinder
TCTCACCAACTCCCCCTCTCCCGC	TTGCGGGAGAGGGATGGGGTGAGGGCAACTGGTTCGAATGGAC
TCCCACCAACTCCCCCTCTCCCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014936.1\|WP_096460568.1\|1446954_1449543_+\|alanine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234701
NZ_AP014936.1\|WP_096460567.1\|1446216_1446681_+\|regulatory-protein-RecX	unknown	unknown	gnl\|CDD\|234646
NZ_AP014936.1\|WP_096460573.1\|1452712_1452913_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014936.1\|WP_096460565.1\|1444237_1444984_-\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667
NZ_AP014936.1\|WP_096460559.1\|1438751_1440137_+\|malonyl-CoA-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|368376
NZ_AP014936.1\|WP_096460570.1\|1451236_1451446_+\|carbon-storage-regulator-CsrA	unknown	unknown	gnl\|CDD\|234973
NZ_AP014936.1\|WP_096460577.1\|1458088_1460476_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|274350
NZ_AP014936.1\|WP_096460564.1\|1443012_1444161_-\|(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	unknown	unknown	gnl\|CDD\|377382
NZ_AP014936.1\|WP_096460578.1\|1460509_1462132_-\|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase	unknown	unknown	gnl\|CDD\|133463
NZ_AP014936.1\|WP_096460561.1\|1441124_1441775_-\|sel1-repeat-family-protein	unknown	unknown	gnl\|CDD\|276807
NZ_AP014936.1\|WP_096460574.1\|1452951_1453389_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371647
NZ_AP014936.1\|WP_096460566.1\|1445170_1446217_+\|recombinase-RecA	unknown	unknown	gnl\|CDD\|236476
NZ_AP014936.1\|WP_096460575.1\|1454146_1455493_-\|PEP-CTERM-box-response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|274348
NZ_AP014936.1\|WP_096460572.1\|1452407_1452716_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014936.1\|WP_096460563.1\|1442459_1442993_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014936.1\|WP_096460558.1\|1437438_1438755_+\|TRAP-transporter-large-permease	unknown	unknown	gnl\|CDD\|224509
NZ_AP014936.1\|WP_169924002.1\|1455462_1457640_-\|PEP-CTERM-system-histidine-kinase-PrsK	unknown	unknown	gnl\|CDD\|274349
NZ_AP014936.1\|WP_096460562.1\|1441885_1442395_+\|nicotinamide-nucleotide-amidase	unknown	unknown	gnl\|CDD\|179627
NZ_AP014936.1\|WP_096460569.1\|1449646_1450903_+\|aspartate-kinase	unknown	unknown	gnl\|CDD\|235843
NZ_AP014936.1\|WP_096460560.1\|1440327_1441098_+\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667

Protein	Function_ID	Function_description	E-value
NZ_AP014936.1\|WP_096460568.1\|1446954_1449543_+\|alanine--tRNA-ligase	gnl\|CDD\|234701	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.	0
NZ_AP014936.1\|WP_096460567.1\|1446216_1446681_+\|regulatory-protein-RecX	gnl\|CDD\|234646	PRK00117, recX, recombination regulator RecX; Reviewed.	3.95943e-38
NZ_AP014936.1\|WP_096460575.1\|1454146_1455493_-\|PEP-CTERM-box-response-regulator-transcription-factor	gnl\|CDD\|274348	TIGR02915, Two_Component_Transcriptional_Regulator_Fis_family, PEP-CTERM-box response regulator transcription factor. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP\|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions].	0
NZ_AP014936.1\|WP_096460565.1\|1444237_1444984_-\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	1.31833e-14
NZ_AP014936.1\|WP_096460559.1\|1438751_1440137_+\|malonyl-CoA-decarboxylase-family-protein	gnl\|CDD\|368376	pfam05292, MCD, Malonyl-CoA decarboxylase C-terminal domain. This family consists of several eukaryotic malonyl-CoA decarboxylase (MLYCD) proteins. Malonyl-CoA, in addition to being an intermediate in the de novo synthesis of fatty acids, is an inhibitor of carnitine palmitoyltransferase I, the enzyme that regulates the transfer of long-chain fatty acyl-CoA into mitochondria, where they are oxidized. After exercise, malonyl-CoA decarboxylase participates with acetyl-CoA carboxylase in regulating the concentration of malonyl-CoA in liver and adipose tissue, as well as in muscle. Malonyl-CoA decarboxylase is regulated by AMP-activated protein kinase (AMPK).	1.18007e-111
NZ_AP014936.1\|WP_096460570.1\|1451236_1451446_+\|carbon-storage-regulator-CsrA	gnl\|CDD\|234973	PRK01712, PRK01712, carbon storage regulator CsrA.	1.51498e-28
NZ_AP014936.1\|WP_096460577.1\|1458088_1460476_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	1.60264e-64
NZ_AP014936.1\|WP_096460564.1\|1443012_1444161_-\|(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	gnl\|CDD\|377382	pfam04551, GcpE, GcpE protein. In a variety of organisms, including plants and several eubacteria, isoprenoids are synthesized by the mevalonate-independent 2-C-methyl-D-erythritol 4-phosphate (MEP) pathway. Although different enzymes of this pathway have been described, the terminal biosynthetic steps of the MEP pathway have not been fully elucidated. GcpE gene of Escherichia coli is involved in this pathway.	9.76465e-139
NZ_AP014936.1\|WP_096460578.1\|1460509_1462132_-\|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase	gnl\|CDD\|133463	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins. WecA is an UDP-N-acetylglucosamine (GlcNAc):undecaprenyl-phosphate (Und-P) GlcNAc-1-phosphate transferase that catalyzes the formation of a phosphodiester bond between a membrane-associated undecaprenyl-phosphate molecule and N-acetylglucosamine 1-phosphate, which is usually donated by a soluble UDP-N-acetylglucosamine precursor. WecA participates in the biosynthesis of O antigen LPS in many enteric bacteria and is also involved in the biosynthesis of enterobacterial common antigen. A conserved short sequence motif and a conserved arginine at a cytosolic loop of this integral membrane protein were shown to be critical in recognition of substrate UDP-N-acetylglucosamine.	1.84403e-69
NZ_AP014936.1\|WP_096460561.1\|1441124_1441775_-\|sel1-repeat-family-protein	gnl\|CDD\|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	1.00704e-41
NZ_AP014936.1\|WP_096460574.1\|1452951_1453389_+\|hypothetical-protein	gnl\|CDD\|371647	pfam11645, PDDEXK_5, PD-(D/E)XK endonuclease. This family of endonucleases includes a group I intron-encoded endonuclease. This family belongs to the PD-(D/E)XK superfamily.	4.1367e-37
NZ_AP014936.1\|WP_096460566.1\|1445170_1446217_+\|recombinase-RecA	gnl\|CDD\|236476	PRK09354, recA, recombinase A; Provisional.	0
NZ_AP014936.1\|WP_096460558.1\|1437438_1438755_+\|TRAP-transporter-large-permease	gnl\|CDD\|224509	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism].	6.58301e-106
NZ_AP014936.1\|WP_169924002.1\|1455462_1457640_-\|PEP-CTERM-system-histidine-kinase-PrsK	gnl\|CDD\|274349	TIGR02916, sensor_histidine_kinase, putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes. [Protein fate, Protein and peptide secretion and trafficking, Signal transduction, Two-component systems].	0
NZ_AP014936.1\|WP_096460562.1\|1441885_1442395_+\|nicotinamide-nucleotide-amidase	gnl\|CDD\|179627	PRK03661, PRK03661, nicotinamide-nucleotide amidase.	1.79035e-67
NZ_AP014936.1\|WP_096460569.1\|1449646_1450903_+\|aspartate-kinase	gnl\|CDD\|235843	PRK06635, PRK06635, aspartate kinase; Reviewed.	0
NZ_AP014936.1\|WP_096460560.1\|1440327_1441098_+\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	5.10367e-32

>NZ_AP014936.1|WP_096460567.1|1446216_1446681_+|regulatory-protein-RecX
MDEPAIDAARARSLALRWLTRREHSREELTEKLRRKGCAGGVAEEVAARLAEEGLLSDERFAEILVRSRRERGHGPLRIAKELEEKGLTQDAIERWVDPRSRDWVAQASRVRRRKFGARPPKDYAERARQARFLQYRGFTFDQIKRALKEAGED
>NZ_AP014936.1|WP_096460566.1|1445170_1446217_+|recombinase-RecA
MDSNKTKALSAALGQIEKQFGKGSVMRLGDSGTVQPAEVISTGSLGLDIALGIGGMPRGRVVEIYGPESSGKTTLALSLTAQAQKLGGTAAFVDAEHALDPLYAKKLGVNIDELLVSQPDSGEQALEITDMLVRSGAVDVVVIDSVAALTPKAEIEGEMGEPQMGLHARLMSQALRKLTANIKRSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASQRLDIRRIGSIKKGEEVIGNQTRVKVVKNKLAPPFRQCEFDILYNEGISKLGELIDIGVEQGIIEKSGAWYTYKKDRIGQGKENAREYLKEHGDTAAEIEARIREKTVIARSGGNGEAAEAVPEEVEA
>NZ_AP014936.1|WP_096460565.1|1444237_1444984_-|sulfite-exporter-TauE/SafE-family-protein
MPIPDEILYLAPFVIVLSYTIFGATGFGSALITIPVLAHVLPLTFVVPLGLLLDFSASLLSGVRFRREVNRREIYALLPFGLAGTIIGVVLLVTVPRQPALLALGLFIAGYGFYSFWNHEITRTVGRAWAALAGTLGGIVGAVFGTGGPLFVIYLSRRIRKTKELKATLAAVFTLQTSGRIAVFAVSGLLLRSDLLLSALLLFPVMLLGLRIGNRVHDRLPRQAVMQGISVLLVLSGASLIYRAIVAE
>NZ_AP014936.1|WP_096460564.1|1443012_1444161_-|(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase
MSHSLPRNPTRAVRIGSVTIGAGHPIAVQSMCATRTQDIEATVGQVQALAAAGADVIRIAVDNRKDAAALASIRSQTNANLSADLQENYRMAELVAPHVDKLRYNPGHLYHHERAKPWQDKVRYLVDIAGGRGIALRVGVNCGSVDPAKADKYAANDKLSPMIESALEHCELLDRIGFTNYCVSLKDSDPNQVIEVNTRFAAERPDVPLHLGVTEAGLPPDGIVKTRVAFEQLISRGIGDTIRVSLTVPNPRKHEEIVVGRQILADIAAGRVRSVVRYDNSGLNIISCPSCSRVENEAFIDLAEQVREMTRYAAAHAVTIAVMGCRVNGPGETDEADLGLWCGPNHVNLKRGERSLGAFRYDEILARLKQELDAVIASKGSA
>NZ_AP014936.1|WP_096460563.1|1442459_1442993_+|hypothetical-protein
MKKFVLLAAIAFGAWAWSTEAGNELVARLYAMVTGRAAIEIDFDSLTPEVAEDEIKTLYSSSKFKCYDERSELGDRVCFTDVREVNGVPARYAAFFFKDAELSNVKVALDGKDHPTLVQTFTDTYGEWRTVGSRKDVYGKPIVGWYLSSGVLAVSETAPRDKEATLLWISRHRLLPG
>NZ_AP014936.1|WP_096460562.1|1441885_1442395_+|nicotinamide-nucleotide-amidase
MTNDASDARLQNLAAEVGRALERERLMLATAESCTGGWVAQVCTAIAGSSEWFERGFVTYSNRAKTEMLGVAAETLADYGAVSEPTARAMAEGALRHGAAQVALAITGIAGPTGGTAEKPVGTVWFAWAARGRATRSERRRFDGDREAVRRQAVAHALDGLSSFLGSRS
>NZ_AP014936.1|WP_096460561.1|1441124_1441775_-|sel1-repeat-family-protein
MHRSKPARKGHGARPVPLLAPFLALLLTPVSVPAATPPALHTSPPPGETMGSDGRADGPQRAFLTGVAAYDGGDYARAVQLWEAPAEQGHAGAQFSLGVAYATGKGVASDLARAIRWWRAAAEQGHVGAQFNLGMLYSRGEGVERDLNLAKTWWHRAATGGDAAAQFHLGALAATGEGEPQNYTEAAKWWRRAAAQGYPHAVKGLEILRSHGALRE
>NZ_AP014936.1|WP_096460560.1|1440327_1441098_+|sulfite-exporter-TauE/SafE-family-protein
MLSGAAAGVMAGLLGIGGGMLIVPVIALLLERQGVSPDVIMQCAIGTSLATITFTALSSMRAHHKRGAVRWPLFMRLTPGIVIGGLLGAAIADWLPGRSLRYIVAVSMLAVAAQMAFGGRAANPHRTLPGRPVLVTAGGLIGTLSTLIGIGGGSLTVPFLTWCSVPVKQAIATAAALGFPIALSGAVGYVVGGLNESDLPPFSLGYIVLPAFAGIVVASTAAAPLGARLAHRLSDVTLRRIFAVFLLVLGVRMLLS
>NZ_AP014936.1|WP_096460559.1|1438751_1440137_+|malonyl-CoA-decarboxylase-family-protein
MRRRWLERFLESIADRGRTLVRARHDRTLAGLLRALLSGRGEASGTAMSREVLQAYERMNAEERLRFFQMLEREFSPNREEVRARAEEYLRTGETDDFLALSRAVEPPRQELFRRMNMAPGGTAALVAMRAELLGLLKRHPELGVVEADLAHLLASWFNRGFLTLERIDWHSPADVLEKLIRYDTVHQIQGWDDLQRRLAPDRRCFAFFHPALPGVPLIFLEVALVKGMSSEIGPLIDPNAPVLDPRQADSAIFYSINNTQRGLKGLAFGNFLIKQVLEDLGAELPRLRTLATLSPVPGFAAALRAARAGEHPAFTPERLERLLAPHREALTRAAGPLLPADALFHLLEHEPLRHRALLAEVLERLVLAYLTLLPPRGPGYDPVAAFHLANGARLERINPFSDGSSQGRDAAFGVKVNYRYDPDIVVENHEQFVEEGVIDMSRHLARLHERIAAEWKSAAA
>NZ_AP014936.1|WP_096460558.1|1437438_1438755_+|TRAP-transporter-large-permease
MTPIEIGILIGIVTVLVLAAGVPIAFGLGVVALGFLFYFQGADTFGILGEKFFGGIATFELVALPMFILMGAAVASSPAGRDVYLALDRWMNRVPGGIVISNIGACSIFAALSGSSPATCAAIGKMGIPEMRKRGVPDDLATGSIAAGGTLGILIPPSITMIVYGVATETSIGRLFLAGVFPGLMLTGLFIAWTWFVAWRRGVAFTDMKARFSLRERLEVLPKVLPLLLIVVGILYVLYGGVATPSEAAGVGAMFCLVLVAVIYRIWQPARIWTIFRDTTRESVMIMMIIAASELFGYMMSVLYVTQSVAEWIAVLEVNRWVLMFFINIFLLVAGCFLPPVAIILMTAPILIPIITNAGFDPYWFAVILTVNMEIGLITPPVGLNLYVINGIAPEIRLPVILRGAVPFILLMVLGIVILSIFPGIATWLPDYLMGPTG
>NZ_AP014936.1|WP_096460568.1|1446954_1449543_+|alanine--tRNA-ligase
MKSTEIRTRFLEYFRRNGHAVVPSSPLVPANDPTLLFTNAGMVQFKDVFLGIDKRPYTRAASSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIGYCWEFLTKELKLPPDRLWVTVYQDDDEAADIWLKELKVDPKRFARLGEKSNFWQMGDTGPCGPCSEVFYDHGPGIPGGPPGSPDEDGDRYVEIWNLVFMQYNRDGQGVLTPLPKPSVDTGMGLERIAAVMQGVHSNYAIDLFKNLIAATAKLLGTSERESHSLNVVADHIRAAAFLITDGVFPSNEGRGYVLRRIVRRAIRHGHRLGATEPFFYRLVAPLIAEMGDAYPELTAARETVERALRQEEERFNETLEQGLRILEDGITALEGDVVPGELVFRLYDTYGFPLDLTRDVALERNLRLDMEGFEREMAAQRERARAASSFKTAAVGGGARAAVETAFTGYETVRDEATVQAIVVDGQDRSAIRAGEEGVVYLDRTPFYAESGGQVGDQGWLKTPGAVFVVRDTQKGYAHIGRLERGEIQVGARVECQVNEAKRHATAYNHSATHLLHAALKKVLGPHVQQKGSLVAPDRLRFDFSHFVPMTLEQIQEVEELVNDEIRRNSPVETRLMALDEAMKSGACALFGEKYDEEVRVVGMGEFSLELCGGTHVHRTGDIGFFKIVSEGGVAAGVRRVEAVTGPGALEYVRGIEDRLGRIAELVRGGREEAVAKVEQLQGRLRGLEKELEGLRAQLASGSGSSLLDQVREIKGVKVLAAQLDGADVKTLREAMDRLKDKLGRAAIVLAAVSEGKVTLIAGVTKDLTGKVNAGELVNHVATHVGGRGGGRADMAQAGGTKPEGLPAALEAVTGWVAERL
>NZ_AP014936.1|WP_096460569.1|1449646_1450903_+|aspartate-kinase
MALIVQKYGGTSVGSPERIAAVADKVARMRAAGHDMVVVVSAMSGETDRLIKLAKSVHPEPPARELDVLLATGEQSTIALLSMALNRRGAEARSYTGHQVHILTDNVHGKARILDIDDKRVRDDLKKGRVVVIAGFQGVDEEGNITTLGRGGSDTTAVAMAAALKADECQIYTDVDGVYTTDPRVVPQARRLDRITDEEMLEMASLGSKVLQIRSVEFAGKYRVPLRVLSSFEEGPGTLITYEEDEMEAPVISGIAFNRDEAKITIRGVPDKPGIAARILGDVGRGNINVDMIVQNVGADGTTDFTFTVHRADYPKALEILKQVAQDLKAREVSGDDKIVKISIVGVGMRSHAGVAGTMFKALADEGINIQMISTSEIKVSVVVDEKYLELGVRALHDAFGLGEAPAQGSPAKGAARS
>NZ_AP014936.1|WP_096460570.1|1451236_1451446_+|carbon-storage-regulator-CsrA
MLILTRRIGETLNIGDDVQVTVLGIKGNQVRIGVNAPKEIPVHREEIYERIKKERESGMVREHDVAEKG
>NZ_AP014936.1|WP_096460572.1|1452407_1452716_+|hypothetical-protein
MATKNYTTEWLVLQVKDVKAYVINIWDRNDVLADVTMGAIRAAVNGLTYAELVAQPPEPQVLDAVRREVNQFGFKLHKITFSDLGRVKSLRLIQHAADKLDN
>NZ_AP014936.1|WP_096460573.1|1452712_1452913_-|hypothetical-protein
MRYVFVLCTLLAGCASRGPEFTHNGEPTTWEEYQRAKAECELAVGGENRAAVDVCVRDKGYRWWGS
>NZ_AP014936.1|WP_096460574.1|1452951_1453389_+|hypothetical-protein
MQPRPIHGQHPFMHPKTTGDITEAAVLTALLQAGKAVLRPFSENHRYDLAIDEGDGRISRVQCKTGRLKDGAIEFKTCSSQAHRGKGTRAYHGDIEYFGVYCPETGRSYLVPVTACQTTRVAKLRVEPPKNGQTKGVRPAADFEL
>NZ_AP014936.1|WP_096460575.1|1454146_1455493_-|PEP-CTERM-box-response-regulator-transcription-factor
MAAETTKLLVVEDDPGIRNQLRWCFERYQVLLAGDRTSALEQVRRHRPPLITLDLGLPPDADATSEGFATLDEILALAPDTKVVVVTGNNDRENAVRAVGRGAYDFYYKPIDPVLLGTIINRAARVHELEQANRQLMRLKDSPLDGVLTASPQMLDVCRTIEKVAPSTATVLLKGETGTGKELLARSLHRQSPRSAEPFIAVNCAAIPENLLESELFGHERGAFTGAVRQTPGKIEYANKGTLFLDEIGDLPLSLQAKLLRFLQERTIERVGGRREITVDVRVICATHQDLEAKIERGEFRSDLYYRISEISVRIPPLSMRQGDVLLLARFFIEHFNDEHGRNLKGFTSEAIAAMEAHPWPGNVRELRNRIKRAVIMAEGRQITPKDLELSDESLKEPNFNLREVRDRAEREAALRALSRTNGNVARAAELLGVSRPTMYDLMRKYNL
>NZ_AP014936.1|WP_169924002.1|1455462_1457640_-|PEP-CTERM-system-histidine-kinase-PrsK
MGGEISLEAFSFATASFAATCLAITLLVKPEAGRERGLLTAALILTALWAGAVAVQSFTGRFLLVAHALEVVRGFIWIVFLLALLRTALLHRRFGREFPLVLGAIGALSTLFVLLALLRDVFDARFPPYADIPLLAAHLLLAVGGLVAVEQVYRNTPPWHRRAVKYLCIGTGGMFAYDFYLYADALLLNRVDSAIWNARGFAHALVIPLIGFAIGRKLPWSLADHSNTVLLSRRVVLHTTALAAAGLYLLFMGAGGYYVRTFGGQWGTVAQLTFLFGAILILAVLLFSGQLRAQLNVFISKHFFRYKYDYREEWLRFTRTLSSGVDGERPHERVIRAIAQIMAAPAGVLWLRDDQDRFSAVAHWNWPSESKSLATEHADSPLVALLEGREWVINLDEHGAGARIGRSVNPATLPDWLQATRNAWLVVPLVLHQRLLGFVILARSPINAVNRHFNWEDCDLLKTAGRGAASYLAELESSRALAEARQFEAFNRLSAFVMHDVKGLVTQLSLVVSNASRHRNNPEFLEDAIGTIENSIEKMNRLLTHLSNSQTCCATEQVDLVAMTARAVKDHLPGPQPNAVFECGESEIMVCADRDRLAAVIGHVLQNSRDATPPEGRVQVRVRAGGSDAVIEVEDNGCGMDEHFVRERLFRPFSSTKQAGMGIGMYETREFIRSLGGRVEVNSRVGHGTVVRLHLPLHGNTKQPAVYRYAQPASRRWQPKPQSYS
>NZ_AP014936.1|WP_096460577.1|1458088_1460476_-|tetratricopeptide-repeat-protein
MPLRPLLGRTVLLVLVLALVACGGAEARKAKYFERGKVYFDQENYDKAVIELKNVLQIDPKDAATYLLLAKVEEKRNNHRQAFSAYAKAVELAPDNPHAQARLGRYYLRAGDLTKAQEMADAILNMYPSHVEGRVLKAAITMLQGNEDKALTEATAVVNEHPEAVDAAELLSAMYQKSGNFQRAIATLAQAIEKNPRDVGMRLQLARLYASQKQPEMAERALREVIELEPKNFNHRVTLAAFFAQADRVEQAEKVLREAIQTDPEDMQRRLALVELIANRKGLEYAESELEEALKSDRTNASLRFALGRIYEKRDASGKAVELYRQLIAEHGVKPEGLQARNLLAHLLYSQGKFAEAATLTAEVLKENPRDNAGLLLRGKLALQEGDSLTAISSFRSVLKDQPESSDALGLLGEAHALNRESELAREHFQKAVEANPRNVAARVRFARFLAETGDSATALKEVERALASASDDIAALRLKAELHVTRKEFAAADAAVVKLKSAHAKNPTVYLLAGQLYAGQKKYDAALKEFELAFALSPASPDVLAGIVKVELARGRPEAAVSRLKDVLKNTPDHALAHHMLGEVYLGQKKFVAAEQSIERARELQPKWNLPYRTLANAHAVRGDNEQAIKILEQGLQNVPEDTVLSLALAEAQERAGRHTQAIDAYERVLRHSPNNLVAANNLAALLADHRNDAGGLKRARELVPMLEQAPQPVLRDTAAWVYYRAGEIDKAISLLKPVVEKAPKVAIFQYHLGMAYHKQGDAQAAKLHLSKAVEANAKFPGADEARATLSAIP
>NZ_AP014936.1|WP_096460578.1|1460509_1462132_-|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase
MQYLLAFFTALVISVSIIPLMIRLAPRLGLVDRPDARKVHCQPIPRAGGAGIVLGALIPLALWLPIDPLLLAYLWGSLTLLAFGLWDDAVELGHYTKFLGQFVAVLPVVYYADLHVYCLPFSGLEALPDAITKPFTVFAIVGMINALNHSDGLDGLAGGLSVLSLAAIAYLSHGAGDQTAMIVSLSALGGIVGFLRYNTHPARVFMGDGGSQFLGFSLGFLAVLLTQRTNPALSPALPALLLGLPIVDILAVFVQRVYQGMNWFKATRNHIHHRLLDLGFGHYGSVVVIYSVQTVFVLSAVLMSYENDSIILGLYLIICGMLFAFLYTAESHGWRMARTKPAPRLTRLVESLKRHPRFKSALLTAVAMAIAGLFLAASILTSHVPRDMAIGSLALAALLLFLIGVRRDTSILARTVNYITAAFVIYLESQYIPSLGIALVNWAGTAFFALLAVAIGMAMRYAESDFRTTPMDFLILFLVLSVGFLAEQELVQTQLGIMLVKLVIVFYGCELVLSRLGPKWNPLNLSALSALGILGFRGLI

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Crispr_ID: NZ_AP014936_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP014936_6

2937112-2937174

Orphan

Consensus_repeat	Method
GGCATCAACGCCTGCAAGGGCAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP014936_6

>merge|NZ_AP014936|6|2937112-2937174|CRISPRCasFinder
GGCATCAACGCCTGCAAGGGCAAGAGCGAGTGCGCGACGGCTTCCAACGCCTGCAAGGGCATG

>NZ_AP014936|6|6|2937112-2937174|CRISPRCasFinder
GGCATCAACGCCTGCAAGGGCAAG	AGCGAGTGCGCGACG
GCTTCCAACGCCTGCAAGGGCATG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014936.1\|WP_096461847.1\|2932662_2934885_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_AP014936.1\|WP_096461845.1\|2930476_2931385_+\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|234835
NZ_AP014936.1\|WP_096461855.1\|2944804_2945605_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224041
NZ_AP014936.1\|WP_096461840.1\|2923960_2924698_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_AP014936.1\|WP_096461841.1\|2924805_2925705_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|236763
NZ_AP014936.1\|WP_096461846.1\|2931493_2932564_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NZ_AP014936.1\|WP_096462970.1\|2929316_2930480_+\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|235056
NZ_AP014936.1\|WP_148665489.1\|2925909_2927925_+\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_AP014936.1\|WP_096461858.1\|2948306_2948897_-\|DUF3365-domain-containing-protein	unknown	unknown	gnl\|CDD\|378734
NZ_AP014936.1\|WP_096461857.1\|2946532_2947960_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|372585
NZ_AP014936.1\|WP_096461856.1\|2945616_2946516_-\|nitrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|130251
NZ_AP014936.1\|WP_096461859.1\|2948893_2950261_-\|cytochrome-c3-family-protein	unknown	unknown	gnl\|CDD\|274618
NZ_AP014936.1\|WP_096461843.1\|2928026_2928437_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014936.1\|WP_096461848.1\|2934991_2936668_+\|energy-dependent-translational-throttle-protein-EttA	unknown	unknown	gnl\|CDD\|236992
NZ_AP014936.1\|WP_096461854.1\|2942352_2944797_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224171
NZ_AP014936.1\|WP_096461850.1\|2937295_2938162_+\|DUF692-domain-containing-protein	unknown	unknown	gnl\|CDD\|377459
NZ_AP014936.1\|WP_096461852.1\|2938930_2941636_-\|nitrate-reductase	unknown	unknown	gnl\|CDD\|239155
NZ_AP014936.1\|WP_096461851.1\|2938189_2938969_+\|putative-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|378264
NZ_AP014936.1\|WP_096461844.1\|2928671_2929160_+\|urate-hydroxylase-PuuD	unknown	unknown	gnl\|CDD\|226271
NZ_AP014936.1\|WP_096461853.1\|2941652_2942015_-\|nitrite-reductase-small-subunit-NirD	unknown	unknown	gnl\|CDD\|239606

Protein	Function_ID	Function_description	E-value
NZ_AP014936.1\|WP_096461847.1\|2932662_2934885_+\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	3.7476e-65
NZ_AP014936.1\|WP_096461845.1\|2930476_2931385_+\|ornithine-carbamoyltransferase	gnl\|CDD\|234835	PRK00779, PRK00779, ornithine carbamoyltransferase; Provisional.	0
NZ_AP014936.1\|WP_096461855.1\|2944804_2945605_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224041	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism].	3.61921e-118
NZ_AP014936.1\|WP_096461840.1\|2923960_2924698_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	1.24916e-68
NZ_AP014936.1\|WP_096461841.1\|2924805_2925705_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|236763	PRK10797, PRK10797, glutamate and aspartate transporter subunit; Provisional.	1.14541e-105
NZ_AP014936.1\|WP_096461846.1\|2931493_2932564_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	1.50905e-130
NZ_AP014936.1\|WP_096462970.1\|2929316_2930480_+\|aspartate-aminotransferase-family-protein	gnl\|CDD\|235056	PRK02627, PRK02627, acetylornithine aminotransferase; Provisional.	0
NZ_AP014936.1\|WP_148665489.1\|2925909_2927925_+\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.74295e-88
NZ_AP014936.1\|WP_096461858.1\|2948306_2948897_-\|DUF3365-domain-containing-protein	gnl\|CDD\|378734	pfam11845, DUF3365, Protein of unknown function (DUF3365). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 198 to 657 amino acids in length.	4.0158e-20
NZ_AP014936.1\|WP_096461857.1\|2946532_2947960_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|372585	pfam13379, NMT1_2, NMT1-like family. This family is closely related to the pfam09084 family.	6.84202e-105
NZ_AP014936.1\|WP_096461856.1\|2945616_2946516_-\|nitrate-ABC-transporter-permease	gnl\|CDD\|130251	TIGR01183, Nitrate_transport_permease_protein_NrtB, nitrate ABC transporter, permease protein. This model describes the nitrate transport permease in bacteria. This is gene product of ntrB. The nitrate transport permease is the integral membrane component of the nitrate transport system and belongs to the ATP-binding cassette (ABC) superfamily. At least in photosynthetic bacteria nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA, ntrB, ntrC, ntrD, narB. Functionally ntrC and ntrD resemble the ATP binding components of the binding protein-dependent transport systems. Mutational studies have shown that ntrB and ntrC are mandatory for nitrate accumulation. Nitrate reductase is encoded by narB. [Transport and binding proteins, Anions].	5.98166e-72
NZ_AP014936.1\|WP_096461844.1\|2928671_2929160_+\|urate-hydroxylase-PuuD	gnl\|CDD\|226271	COG3748, COG3748, Predicted membrane protein [Function unknown].	6.00375e-31
NZ_AP014936.1\|WP_096461859.1\|2948893_2950261_-\|cytochrome-c3-family-protein	gnl\|CDD\|274618	TIGR03508, decahem_SO, decaheme c-type cytochrome, DmsE family. Members of this family are small, decaheme c-type cytochromes, related DmsE of Shewanella oneidensis MR-1, which has been shown to be part of an anaerobic dimethyl sulfoxide reductase.	3.81977e-05
NZ_AP014936.1\|WP_096461848.1\|2934991_2936668_+\|energy-dependent-translational-throttle-protein-EttA	gnl\|CDD\|236992	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed.	0
NZ_AP014936.1\|WP_096461854.1\|2942352_2944797_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224171	COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion].	0
NZ_AP014936.1\|WP_096461850.1\|2937295_2938162_+\|DUF692-domain-containing-protein	gnl\|CDD\|377459	pfam05114, DUF692, Protein of unknown function (DUF692). This family consists of several uncharacterized bacterial proteins.	7.48718e-164
NZ_AP014936.1\|WP_096461852.1\|2938930_2941636_-\|nitrate-reductase	gnl\|CDD\|239155	cd02754, MopB_Nitrate-R-NapA-like, Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
NZ_AP014936.1\|WP_096461851.1\|2938189_2938969_+\|putative-DNA-binding-domain-containing-protein	gnl\|CDD\|378264	pfam09836, DUF2063, Putative DNA-binding domain. This family represents the N-terminal part of a Neisseria protein, UniProtKB:Q5F5I0, Structure 3dee. It runs from residues 31-117 as a helical bundle with 4 main helices. \From genomic context and the fold of the C-terminal part, it is suggested that this protein is involved in transcriptional regulation.	3.52851e-19
NZ_AP014936.1\|WP_096461853.1\|2941652_2942015_-\|nitrite-reductase-small-subunit-NirD	gnl\|CDD\|239606	cd03530, Rieske_NirD_small_Bacillus, Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.	1.35932e-54

>NZ_AP014936.1|WP_096461848.1|2934991_2936668_+|energy-dependent-translational-throttle-protein-EttA
MSGQYIFTMHRVTKVVPPKREILKNISLSFFPGAKIGVLGLNGSGKSTLLRIMAGVDTEYDGEARPMPGIRIGFLPQEPQLDPSKDVRGNVEEAVAETKALLDKFNDISMKFGEPMSDDEMNKLLEEQAKLQEKIDAAGAWELDRKLDIAADALRLPPWDADVTRLSGGERRRVALCRLLLSQPDMLLLDEPTNHLDAESVAWLERFLQEYPGTVVAVTHDRYFLDNVAGWILELDRGQGIPWKGNYSSWLEQKEKRLEQEEKQESARQRTMKQELEWVRANPKGRHAKSKARLARYEELASQEYQKRNETQEIFIPPGPRLGDVVVEAEGIGKSFGERMLFENLSFNLPRGGIVGVIGPNGAGKTTLFRMIVGQEKPDNGSLRVGPTVQLAYVDQVRDALEGDKTVWAEISGGHDNILLGKHEVPSRAYVGRFNFRGADQQKFVKDLSGGERNRVHLAKLLKSGGNLLLLDEPTNDLDVDTLRALEEALLEFGGCAVVISHDRWFLDRIATHILAFEGDSNVVWFEGNYADYEADKKRRLGTDAEQPHRIKYKKLVH
>NZ_AP014936.1|WP_096461847.1|2932662_2934885_+|EAL-domain-containing-protein
MEKKILRLLVVDDSPDDAEVVLSAFRKAGFLLKSQLVADLGAFQAAIEKSAWDVVVAEYAVPHFGAAVALEKLKQAAPDTPFVVFTRAIPDADLGKIMRAGAHDVVLKKEPVRLVPAVERELRVAAERKQYRQATQSLAEMENKHRAVIEGSREAICYSQDGMHLDANRMYLDIFGYESLAELEGVPVMNLIDKADHARFKEYIRKSGGSGGPAQEFSAVRQNGERFPAEITVSPITINGEACTQIVVVDVSKRKAVESKLQYLNQHDPLTGLYNRQYFLQELAKSVERAKQSGATGGIIYFDFHQMKQLNKQLGHATGDRLLLKATRALRETLGENVVLARIGDHEFGAILADAAKARLDECTGALKKTLAGLSFSEGGQVHKCDCHFATALIDKSVANGHKLLAGLYRSTEPAPAPAVAPKPASPAPTRAAAPRAEPATPATEATPPAAAPAPAAAAPVPPPGGGPKAPSEWHDRIATALAKGAFQLSYQPIINLHGDPAEYFEVLVRMQGRGDELIAAGQFMTHAVETGQAADIDRWVLRQALQALAELHREHRGSTFFVNVAPTALGDGQLLPLLLETLRETGVPARHLVLEIDESALTAGGAAAGAFVRNAKKAGVQLSVDNFGRDPAALNYLRDLPVDYLKIHGELVSKARDPVGLASLKGVVEVGKSIEKKVIAKNVESAETLSALWNLGIDYAQGNYFQQAEGATDYDEAETTLSESGVPNWAAASSQKRAK
>NZ_AP014936.1|WP_096461846.1|2931493_2932564_+|ABC-transporter-ATP-binding-protein
MLTLSEIECRYDDALVVRGLSMEVARGTIACLLGPSGCGKTTVLRAIAGFHPVDRGEIRLSGRVVSRPGFVLPPERRRLGMVFQDHALFPHLTVADNVGFGLRRAAAAVRRKTVERVLETVGLAAMARRYPHELSGGQQQRVALARALAPQPDLILLDEPFSNLDVELRERLSGEVHDILKRQGTTAVLVTHDQHEAFALGEQIGVMREGRILQWDTAYNLYHEPNCRFVADFIGQGVFLPGTLLAPDTVETELGIYRGNRAYPWGKGARIEVLLRPDDIVPDPDGPLRAAVTQKAFKGAEILYTLRLSSGGNVLALFPSHADHPIGALVGVRVQADHLVAFPSPDSASRTGTAPN
>NZ_AP014936.1|WP_096461845.1|2930476_2931385_+|ornithine-carbamoyltransferase
MKPRHFLTLTDLSQEELGALVRRAIELKDLHRRRRPHTPLAGRTMAMIFEKSSTRTRVSFEAGMAQLGGASLFLSPRDTHLDRGEPVEDTARVMSRMVDVIVIRAHRHEMVERFAAHSRVPVINALTDRHHPCQLLADIQTWVEHRGEIAGRTAAWIGDGNNVCHSWMEAAQRFDFHLRVATPKGYAPDAAMVKAAGRHVTLTDDPQAAAEGADVVVTDTWASMGQESERAERLRAFEDYRVDRALMRLAAGNALFMHCLPAYREHEVTTDVLEGPQSVVWDEAENRMHAQKALLEFLLAGE
>NZ_AP014936.1|WP_096462970.1|2929316_2930480_+|aspartate-aminotransferase-family-protein
MQTYARLPVTFVRGEGAWLWDAEGKRYLDALAGVAVTSLGHAHPAVTQAIREQAGALLHTSNWYGIDWQERLGDALCAVAGMDSAFFSNSGAEANEAAIKLARLYGHKRAAKNPTIVVMEGSFHGRTLATLSASGNRRIQAGFEPLVTGFNRVPYNDLEAVRHVGEHNPDVVAVLVEPVLGEGGVVVPDRGYLKGLRAQCDARGWLLMLDEIQTGMCRTGRWFACEHEGIRPDVMTVAKALGNGVPIGACLARGDAAALFQPGNHGSTYGGNPLACRTATAVIEAMREQRLDARAATLGARMLAGFRERLEGAKGVRQVRGLGLMLGIELDRPCREILTAALARGVLVNVTADSVVRLLPPLILTDEEADRIVATVSDVVREFLGPP
>NZ_AP014936.1|WP_096461844.1|2928671_2929160_+|urate-hydroxylase-PuuD
MELVLDRWLHVLAGITWIGLLYYFNAVQVPGVAAAKADGTAAGITKHIAPRALLWFRWAAVVTWLSGAYYLEAAGIGIGNAFLLKGGAAPIGLGAWLGTIMLFNVWVLIWPNQKKVLGLVQADDAAKARAARVAFLASRTNTMLSLPMLFFMVAGPHGAHLF
>NZ_AP014936.1|WP_096461843.1|2928026_2928437_+|hypothetical-protein
MRSKAAEDWLAESARTANIRDYAAHMDLISRNVQVHGVPGFDVLGYDDWARQCRHEFETGVLKAVRYDGCKVRVMTPGRVMFKTVETVEGTDGTVNVNPIEVLLEKESDGKWRVVQERIITSEEYDFEPRSGAYAP
>NZ_AP014936.1|WP_148665489.1|2925909_2927925_+|serine/threonine-protein-kinase
MQQTPQRAAPTLPYTRLRLLLAVALVIVVAVGLWSYRSIHRSVLELRAYSLEALLGTQIEALDAWVGELKQDVAQWAADPQVRRHAEALTALGARDAGDERLLRSPARRALLAALQLDDEHRVGAHLIDSNGTILASRFERYTGRRLAPEVLERIRPVFLNRRVFIHPYREGDRVLELEVPATDDPLFWVEAPVKDRRGRIVAALGIGYRADRQFARIFQAGRPGRTGAAFAFDAQARLLPSSDVKPASPAAPVRLRDPGAGFADPPTLTALASAAVSSRRAGADLQAGTLLDPYRNHAGERVIGAWRWLPEYDMGIAVEMNEEEAYAPLRYLDIGLAAVLVIVFAVLGGLFLPRDALMRLLRGAPQVGPYRLLDKIGEGAISDVYLARHKLLKRPAAVKLLKSIATTDESIARFRREAELASRLSHPNTVAVYDYGLAGGGLFYYAMEYLEGVSFADLVERYGPVPAARAAYLLRQVCASLGEAHAKHIVHRDIKPQNIMVCEASGRREVVKVLDFGLVKRLDHADTRDLTGSLHVLGTPLYMAPERIRDPGVLDVRSDIYSVGAVAFWLLTGRRLFETETEHDLSYHVLHVTPPRASALAAHPVPPAFDELIARCLAKSPDDRPANAEAVTAVLDEVLAAAPWTEADIAAWWNRHWVPKDDPARRIVPE
>NZ_AP014936.1|WP_096461841.1|2924805_2925705_-|transporter-substrate-binding-domain-containing-protein
MRRFVIALLSAGGLLLPALAAADTLKKVKESGTLVMGIRESSIPLSYLDAGQQPVGYHIDICHRIVDAVKKELKLPAVRVQYQPVTSQNRIPLVTNGTVDIECGSTTNNEARGRQVDFAVTTFVTNVRMAVKKDSGITSLSQLGGKPVATTTGTTSVQLMRAHEKGKGVNFREVYGRDHADSFLMLESDRAVAFVMDDNLLAGLIATSKTPDRYAIVGEVLNVEPIGIMLRKDDPKFKRIADDTIKGMMKSGELEKLYAKWFMSPIPPRDVNMNFPMSDQLKELIKDPNDAPAEAYNKR
>NZ_AP014936.1|WP_096461840.1|2923960_2924698_-|amino-acid-ABC-transporter-permease
MDYNWHWGIFFEQVKAGEETYLDWLIAALGWTVSVSLVAWLIALVLGSLVGIARTTPHRWLRWPGAAWVELFRNIPLLVQMLLWFFVVPELLPENLSLWVKRDMPAKEFVTAAVALGLFTSARIAEQVRAGIESLAGGQRTAGLALGLTLPQTYRHVLLPMAYRIILPPLTSELMNVFKNSSVAFAIGLMELTFTARQMQEDSEQGIETYLAVTVLYFLCAFIANRVMALIERRSRVPGYITQAG
>NZ_AP014936.1|WP_096461850.1|2937295_2938162_+|DUF692-domain-containing-protein
MPSPSLPALGFGLGLRPPHYEAVLECAPAVDWFEVVSENYMVGGGKPLHYLDRVRERYPVVMHGVSLSIGSTDPLDRDYLARLRSLAVRIEPAWISDHLCWTGLGGTNLHDLLPLPYTAEAIAHVVERVQRVQDFLGRRILLENVSSYLTYRDSDMAEWDFLREIAARADCLILLDINNAYVSGRNHGFDPRAYLDALPVERVQQFHLAGHRDLGTHVIDTHDEPIVDPVWELYGYAVRRFGPVATMIERDDRIPELGELVAELDRAREVSTVNGSGGASRAHGQLCT
>NZ_AP014936.1|WP_096461851.1|2938189_2938969_+|putative-DNA-binding-domain-containing-protein
MSLLNLQQAFRNYILHGEDALLSGVVGSGRMDAGSRLAIYADAYRLRLNEALETDFVVLRAHLGPERFERLCGAYIGAHPSNHWSLRCFGRHMSAFLASAAPWTKEPFLAELARFEWALVDAFDAEDGTVARPHDVAAIAPARWPHVVMRPHASVQRLDLAWNAPAVWKAVKDEQPPPAPARADHLRGWVIWRQGLQNYFRPLPVEEAFALDAMLRGEAFGAICEGLLEWMDAPNAAERAAGLLKLWLTDGLVGELRLP
>NZ_AP014936.1|WP_096461852.1|2938930_2941636_-|nitrate-reductase
MTAAAEIRTTCPYCGVGCGVLARVEADGRVAVRGDPAHPANRGRLCSKGAALGETTGLEERLLHPEVRGSRASWDVALGLVAGRFAEAIATHGPDAVAFYVSGQMLTEDYYVANKLMKGFIGSANIDTNSRLCMASAVAGHRRAFGADVVPGCYEDIERAKLVVLVGSNAAWCHPVLYQRLAQARREHDDLKVVVIDPRRTASADIADLHLPIRIGTDTVLYNGLLAYVAEHDELNASFVERHTEGLGEALAAARAGSPDVATVAAQCGLATEQVRRFYELFARTERVVTLYSQGVNQSSSGTDKVNAIINCHLATGRIGRPGMGPLSLTGQPNAMGGREVGGLANQLAAHLELGYPAHRELVRRFWRAPRVAQQPGLKAVELFEAVEQGRIKALWIMATNPAVSLPDAGRVRRALAGCDFVVVSDCVRDTDTTRLAHVLLPALAWGEKDGSVTNSERRISRSRAFLPAPGEARPDWWIVCEVAKRLGFREAFDYPDAAAIFGEHAALSAHANDGTRAFDIGALAGLDAAGYERLEPVQWPATRARPEGTARCFVDGGFYTPSGRARFVAVVPRPPAHAPDDDHPLALATGRVRDHWHTLTRTGASPRLSAHVVEPYVEVSPDDAARFGLADGGLARVISAWGEACARVRVSSAVSPGAVFAPMHWNDRFASAGCVNRAVNPATDPVSGEPEFKHTPVRLEPVTAAWHGFLLSRRRVARPGADYWAVARGDGLWRHELAGKEAPDDWTRAARALLCADDAGVEWIEYVDRAGRRYRAARLVGGRLESCLFVGPDPRLPSREWLQGLFALPRLDAATRTALLAGTPPKGQADAGRRVCACFAVGERTLREAIHDGCTSVEALGRRLGAGSNCGSCIPELRALLAQSAVAGSGQTQLADQTVG
>NZ_AP014936.1|WP_096461853.1|2941652_2942015_-|nitrite-reductase-small-subunit-NirD
MAVNQAKQITPEWIDIGPLASIPRQGARVVRAAFGDIAVFRTAGDEVFALRDRCPHKGGPLSQGIVHGRRVACPLHDWKVHLDTGLAVAPDEGCAARFPLRVEGGRVFLSLTPDEGCPDR
>NZ_AP014936.1|WP_096461854.1|2942352_2944797_-|NAD(P)/FAD-dependent-oxidoreductase
MTMKERLVLVGNGMAGVRALEELIELAPDRYAVTVFGAEPLPNYNRILLSPVLTGEKRFEEIVLNGDGWYAGNGITLHKGKEVVRIDRARRRVVAADGTEAPYDRLILATGSAPFVIPVPGTKLPGVVTFRDLYDVECMLAIARSRQDAVVIGGGLLGLEAANGLLKQGMRVTVIHLLDALMEKQLDRAAAALLRRSLEERGLRFAMEAQTEAIVGDERVRAVRLKDGTEIPADLVVMAVGIRPNIALAQSAGLHCERGVVVNDTMQTYDPRIYAVGECVQHRGQTYGLVAPLFEQAKVCANHLARLGYARYTGSMTSTKLKVTGIDLFSAGEFQGGDGVEEIVLQDPGRGVYKKLALKDNRIRGAVMYGDTMDGAWYFQLMRDGTDVADLRDRLLFGQAHVGDSGHGDIKTRVSALADDAEICGCNGVCKGAIVSAITGKKLFTLEEVRAHTKASSSCGSCTGLVEALLASTLGGDYSTTPKKKPLCPCTDHAHDEIREAIRSLGLKTIRAVMEKLEWKTPDGCNKCRPALNFYLLVAWPGEYVDDNQSRFINERVHANIQKDGTYSVVPRIWGGETTPAELKALAEIAEKYRVPTVHITGGQRIDFLGVPKETLPAMWGDLSRAGFVSGHAYGKAIRTVKTCVGKNWCRFGTQDSTTMGIQLEKMAWGSWMPHKVKLAVSGCPRNCAEATIKDFGVVCVDSGYELHVGGNGGVKVRATDFLCAVKTPVEVLEYCAAFLQVYREEAHYLERTAPWVERVGLAYVKRRVVEDETGRKALAQRFLHSQTFAQVDPWTERAEGKDRHEFVPLRRVG
>NZ_AP014936.1|WP_096461855.1|2944804_2945605_-|ABC-transporter-ATP-binding-protein
MKSHLNLENVGVEFRTARGPFRALRDVTLRIERGEFVSIIGHSGCGKSTLLNVVAGLLPATEGVVLLEDREVKDPGPERAVVFQSHSLLPWLTVYENVRMAVDKVFADGKTRAERHAWTLANLERVRMHYALEKRPGELSGGMKQRVGIARALAMEPKVLLMDEPFGALDALTRASLQEALMEIHASLGNTVIMITHDIDEAVLLSDRIVMMTNGGEAGATVGEILAVDLPRPRDRLVLAEKPEYARARAAVLKFLYERERHPAAA
>NZ_AP014936.1|WP_096461856.1|2945616_2946516_-|nitrate-ABC-transporter-permease
MPAAIVKLAPKKSEAQPVPKSAGAASPAPPATASPGRRRVRVGRDWLARLSLPLLTFLVLLAAWAIVQAHVAPELPSPKAAAERALEIFADPFRDAGPNDKGIGWQLLYSLGRVAAGFGLAVLVAIPVGFLMGASRTFDTAWQPLVQILRPVSPLAWLPIGLLLFKAVNPSAIFVIFITCIWPTLLNTAAGVRAIPRDYMNVARVLKLNPIEVATKILLPAARPYILAGMRLSLGIAWMVIVAAEMLTGGIGIGFYVWDEWNNLNVSSIIVAIVVIGLVGMALEGLMNAVQRRLDPTAR
>NZ_AP014936.1|WP_096461857.1|2946532_2947960_-|ABC-transporter-substrate-binding-protein
MSAGDKYRGKGAPPQPSRRTFLRTGAAGIGAIGVGSLLPDFLRVGAYAGSGEPLEKTRLTFGIIPLTDCAVLVVAAEKGYFRKQGLDVAISKEASWANIRDKVSIGALDGAHMLAGMPIAASLGIGAVPKPTVTAFSMDLNGNGITVSNELYERMVAADPQAMQERPTTARALKKVIDADRKAGRPPMTFAVVFPVSTHNYELRYWMASAGIDPDNDVRLIVIPPPQMVANLSARNIVGYCVGEPWNERAVTAGLGRTIITNYEIWNNNPEKVFGVNLEWAEKHPNTHRAAIRALLEAAQWMDQPENRMEVVKIISQKSYVNAPEEVVKMSMTGTYQYGKNEAPRPLPDFNVFYRYAATFPWRSHAEWFIGQMIRWGQIEQPLDIRKTAAAVYRPDIYRDAAKALGIPVPTVDRKTEGTHAGPWTLTQATQPIAMGPDRFFDGMTFDPARPLAYLKSFEVQTMKVDLAALARVNA
>NZ_AP014936.1|WP_096461858.1|2948306_2948897_-|DUF3365-domain-containing-protein
MKYPTRSLRLALVAAASTVAVAGCSASGSKSEGGITPQAMTDALHTVLETDRTVYTKLIVNRLQNEEKIIKASEHWKEDKALVLPAQMFRAGAEMVRDKGATFSYSLLSLWPVNKQNAPKTEAEKAGLQYIIDKKGENYYAKEKLGDKTYFTAVYPDYAVAPACVTCHNEHKDSPRTDFRIGDVMGGVVIRIPIDA
>NZ_AP014936.1|WP_096461859.1|2948893_2950261_-|cytochrome-c3-family-protein
MAARSRIGWWIAALALAVALSGYLAARLVWADKTVFTPGTMIDGHYQIEKACEVCHTPFGGVKQAACVACHGTELEAVKDSHPKSKFDDPRNAELLETIDARRCITCHTEHRPQRTRAMGVTLPEDLCVHCHAEVGAERPSHANLAFDTCASAGCHNYHDNSALYEDFLVKHRDRPATLAPARLGMRDLRNWMQAAGIARRPPLDAADHDAPADRVTDAKLLEDWRATAHARAGVNCRDCHRGPDASAASAWVDRPAPAVCAGCHSEEREGFEAGRHGMRLKQQLPPMRPREARLPMHADAADRELGCTSCHGAHAFDTRTAAAESCLGCHDDDHSRAYRGSAHARLWSAELRGEAAAGSGVSCATCHLPRTPRKAGGVETQVRVEHNQNANLRPNEKMVRGVCLACHGLAFSIDALADPDLVRRNFAGRPAHHVTSIDMALERLSQPRQPRRPR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1617100 : 1624804

Chelonid_alphaherpesvirus(16.67%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_169924019.1\|1617100_1618285_+	serine/threonine protein kinase	V5NXA4	Chelonid_alphaherpesvirus	1.2e-07	28.4
WP_096460694.1\|1618483_1619332_-	peptidoglycan DD-metalloendopeptidase family protein	A0A7K9	Microcystis_virus	4.9e-14	39.7
WP_096460695.1\|1619328_1620693_-	exodeoxyribonuclease VII large subunit	A0A1B3AYB4	Gordonia_phage	2.6e-33	36.3
WP_096460696.1\|1620778_1621096_-	hypothetical protein	NA	NA	NA	NA
WP_096460697.1\|1621218_1622676_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	2.9e-91	40.5
WP_096460698.1\|1622774_1624349_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	1.4e-19	32.1
WP_096460699.1\|1624345_1624804_+\|tRNA	tRNA adenosine(34) deaminase TadA	S4VYT2	Pandoravirus	6.3e-08	41.0

DBSCAN-SWA_2

2183416 : 2191470

Staphylococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096461142.1\|2183416_2184583_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	9.6e-53	34.6
WP_096461143.1\|2184778_2186026_+	serine/threonine protein kinase	A0A1B1IUU3	uncultured_Mediterranean_phage	3.8e-23	27.8
WP_096461144.1\|2186066_2186573_+	hypothetical protein	NA	NA	NA	NA
WP_096461145.1\|2186574_2187231_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	2.7e-28	36.9
WP_096462914.1\|2187234_2188308_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	4.7e-38	31.4
WP_096461146.1\|2188334_2188895_-	transcriptional repressor NrdR	NA	NA	NA	NA
WP_096461147.1\|2189103_2190369_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	2.8e-98	52.2
WP_096461148.1\|2190462_2191470_-	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.4e-47	37.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_AP014936

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection