CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_AP017375	Stanieria sp. NIES-3757 DNA, complete genome	8 crisprs	csa3,c2c5_V-U5,cas3,DEDDh,RT,cas5,cas8c,cas7,cas4,cas1,cas2,cas8b3,cas6,DinG	0	4	3	0
NZ_AP017376	Stanieria sp. NIES-3757 plasmid plasmid1 DNA, complete genome	0 crisprs	cas14j	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_AP017375_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP017375_1

66380-66495

Orphan

Consensus_repeat	Method
TTTACCTCTGAAGAGGCTAGAGAAGCTGGACGCAAAGGTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP017375_1

>merge|NZ_AP017375|1|66380-66495|CRISPRCasFinder
TTTACCTCTGAAGAGGCTAGAGAAGCTGGACGCAAAGGTGGAAAAGCAGCTCATGAAAAAGGTACTGCCCATGAATTTACCTCTGAAGAGGCTAAAGAAGCTGGACGCAAAGGTGG

>NZ_AP017375|1|1|66380-66495|CRISPRCasFinder
TTTACCTCTGAAGAGGCTAGAGAAGCTGGACGCAAAGGTGG	AAAAGCAGCTCATGAAAAAGGTACTGCCCATGAA
TTTACCTCTGAAGAGGCTAAAGAAGCTGGACGCAAAGGTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP017375.1\|WP_096379449.1\|57485_58070_-\|phycobilisome-protein	unknown	unknown	gnl\|CDD\|381268
NZ_AP017375.1\|WP_096379478.1\|71155_73102_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|284995
NZ_AP017375.1\|WP_096379443.1\|53651_55325_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017375.1\|WP_096379462.1\|61558_64672_-\|response-regulator	unknown	unknown	gnl\|CDD\|223715
NZ_AP017375.1\|WP_096379494.1\|80210_80642_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017375.1\|WP_096379483.1\|76401_77904_+\|glycerol-kinase-GlpK	unknown	unknown	gnl\|CDD\|198361
NZ_AP017375.1\|WP_096379486.1\|78058_78949_+\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224995
NZ_AP017375.1\|WP_096379457.1\|59697_60519_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372967
NZ_AP017375.1\|WP_096379460.1\|60625_61351_-\|beta-propeller-domain-containing-protein,-methanol-dehydrogenase	unknown	unknown	gnl\|CDD\|224429
NZ_AP017375.1\|WP_096379454.1\|58993_59536_+\|phycobiliprotein-lyase	unknown	unknown	gnl\|CDD\|381208
NZ_AP017375.1\|WP_096379470.1\|69414_69897_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|293813
NZ_AP017375.1\|WP_096379464.1\|65051_65660_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017375.1\|WP_096379489.1\|79014_79617_+\|cob(I)yrinic-acid-a,c-diamide-adenosyltransferase	unknown	unknown	gnl\|CDD\|235662
NZ_AP017375.1\|WP_096379473.1\|69993_70719_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017375.1\|WP_096379446.1\|56339_57401_+\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|213890
NZ_AP017375.1\|WP_096379466.1\|65710_65917_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182059
NZ_AP017375.1\|WP_096379475.1\|70828_71041_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017375.1\|WP_096379491.1\|79628_80150_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017375.1\|WP_096379451.1\|58191_58851_+\|HEAT-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|224331
NZ_AP017375.1\|WP_096379481.1\|73308_76014_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|237425

Protein	Function_ID	Function_description	E-value
NZ_AP017375.1\|WP_096379449.1\|57485_58070_-\|phycobilisome-protein	gnl\|CDD\|381268	cd12130, Apl, Allophycocyanin-like globins. phycobilisomes (PBSs) are the main light-harvesting complex in cyanobacteria and red algae. In general, they consist of a central core and surrounding rods and function to harvest and channel light energy toward the photosynthetic reaction centers within the membrane. They are comprised of phycobiliproteins/chromophorylated proteins (PBPs) maintained together by linker polypeptides. PBPs have different numbers of chromophores, and the basic monomer component (alpha/beta heterodimers) can further oligomerize to ring-shaped trimers (heterohexamers) and hexamers (heterododecamers). Stacked PBP hexamers form both the core and the rods of the PBS; the core is mainly made up by allophycocyanin (APC) while the rods can be composed of the PBPs phycoerythrin (PE), phycocyanin (PC) and phycoerythrocyanin (PEC). This subfamily contains allophycocyanin-like proteins (Apls), which have conserved the residues critical for chromophore interactions, but may not maintain the proper alpha-beta subunit interactions and tertiary structure of phycobiliproteins. Indeed AplA isolated from Fremyella diplosiphon was not detected in phycobilisomes. As the genes encoding Apls cluster with light-responsive regulatory components, Apls may have photoresponsive regulatory role(s).	2.00926e-78
NZ_AP017375.1\|WP_096379478.1\|71155_73102_-\|hypothetical-protein	gnl\|CDD\|284995	pfam07693, KAP_NTPase, KAP family P-loop domain. The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side.	1.0959e-07
NZ_AP017375.1\|WP_096379481.1\|73308_76014_-\|PAS-domain-S-box-protein	gnl\|CDD\|237425	PRK13557, PRK13557, histidine kinase; Provisional.	5.81426e-77
NZ_AP017375.1\|WP_096379483.1\|76401_77904_+\|glycerol-kinase-GlpK	gnl\|CDD\|198361	cd07786, FGGY_EcGK_like, Escherichia coli glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases. This subgroup is composed of mostly bacterial and archaeal glycerol kinases (GK), including the well characterized proteins from Escherichia coli (EcGK), Thermococcus kodakaraensis (TkGK), and Enterococcus casseliflavus (EnGK). GKs contain two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The high affinity ATP binding site of EcGK is created only by a substrate-induced conformational change, which is initiated by protein-protein interactions through complex formation with enzyme IIAGlc (also known as IIIGlc), the glucose-specific phosphocarrier protein of the phosphotransferase system (PTS). EcGK exists in a dimer-tetramer equilibrium. IIAGlc binds to both EcGK dimer and tetramer, and inhibits the uptake and subsequent metabolism of glycerol and maltose. Another well-known allosteric regulator of EcGK is fructose 1,6-bisphosphate (FBP), which binds to the EcGK tetramer and plays an essential role in the stabilization of the inactive tetrameric form. EcGK requires Mg2+ for its enzymatic activity. Members in this subgroup belong to the FGGY family of carbohydrate kinases.	0
NZ_AP017375.1\|WP_096379457.1\|59697_60519_+\|hypothetical-protein	gnl\|CDD\|372967	pfam14218, COP23, Circadian oscillating protein COP23. This family includes the circadian oscillating protein COP23 from Cyanothece sp. (strain PCC 8801). The levels of this peripheral membrane protein display a circadian oscillation.	1.63559e-42
NZ_AP017375.1\|WP_096379460.1\|60625_61351_-\|beta-propeller-domain-containing-protein,-methanol-dehydrogenase	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	7.6342e-39
NZ_AP017375.1\|WP_096379462.1\|61558_64672_-\|response-regulator	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.65217e-45
NZ_AP017375.1\|WP_096379470.1\|69414_69897_+\|hypothetical-protein	gnl\|CDD\|293813	cd07727, YmaE-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis YmaE and related proteins; MBL-fold metallo hydrolase domain. Includes the uncharacterized Bacillus subtilis YmaE and Nostoc all1228 proteins.Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry. .	8.83226e-26
NZ_AP017375.1\|WP_096379489.1\|79014_79617_+\|cob(I)yrinic-acid-a,c-diamide-adenosyltransferase	gnl\|CDD\|235662	PRK05986, PRK05986, cob(I)yrinic acid a,c-diamide adenosyltransferase.	7.42003e-110
NZ_AP017375.1\|WP_096379486.1\|78058_78949_+\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|224995	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism].	5.68124e-111
NZ_AP017375.1\|WP_096379446.1\|56339_57401_+\|radical-SAM-protein	gnl\|CDD\|213890	TIGR04070, photo_TT_lyase, spore photoproduct lyase. DNA damage to bacterial spores from ultraviolet light accumulates in the form of 5-thyminyl-5,6-dihydrothymine, spore photoproduct. The damage is repaired by spore photoproduct lyase, a member of the radical SAM family of enzymes. The score of this model is set to restrict itself to spore-forming members of the Firmicutes, but additional homologs scoring below the trusted cutoff tend to occur in radioresistant organisms (e.g. Kineococcus radiotolerans) and may be functionally equivalent. A related family in the Mycobacterium lineage is described by family TIGR03886, and may or may not be equivalent in function. [DNA metabolism, DNA replication, recombination, and repair, Cellular processes, Sporulation and germination].	3.8635e-118
NZ_AP017375.1\|WP_096379466.1\|65710_65917_+\|hypothetical-protein	gnl\|CDD\|182059	PRK09752, PRK09752, AIDA-I family autotransporter YfaL.	8.58588e-11
NZ_AP017375.1\|WP_096379454.1\|58993_59536_+\|phycobiliprotein-lyase	gnl\|CDD\|381208	cd19433, lipocalin_CpcS-CpeS, CpcS/CpeS phycobiliprotein lyase family. Phycobilin lyases covalently attach a chromophore to the Cys residue(s) of cyanobacterial phycobiliproteins. They include Synechococcus sp. PCC 7002 phycocyanobilin lyase CpcS which attaches a phycocyanobilin chromophore to C-phycocyanain beta subunit and to allophycocyanin alpha and beta subunits, Synechococcus sp. PCC 7002 phycocyanobilin lyase subunit CpcU which forms a heterodimer with CpcS-I to attach phycocyanobilin to beta-phycocyanin and to allophycocyanin subunits, and Prochlorococcus marinus phycoerythrobilin lyase CpeS which attaches 3Z-phycoerythrobilin to phycoerythrin. This group belongs to the lipocalin/cytosolic fatty-acid binding protein family which have a large beta-barrel ligand-binding cavity. Lipocalins are mainly low molecular weight extracellular proteins that bind principally small hydrophobic ligands, and form covalent or non-covalent complexes with soluble macromolecules, as well as membrane bound-receptors. They participate in processes such as ligand transport, modulation of cell growth and metabolism, regulation of immune response, smell reception, tissue development and animal behavior. Cytosolic fatty-acid binding proteins, also bind hydrophobic ligands in a non-covalent, reversible manner, and have been implicated in intracellular uptake, transport and storage of hydrophobic ligands, regulation of lipid metabolism and sequestration of excess toxic fatty acids, as well as in signaling, gene expression, inflammation, cell growth and proliferation, and cancer development.	1.00312e-57
NZ_AP017375.1\|WP_096379451.1\|58191_58851_+\|HEAT-repeat-domain-containing-protein	gnl\|CDD\|224331	COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion].	6.18115e-14

>NZ_AP017375.1|WP_096379466.1|65710_65917_+|hypothetical-protein
MINYQFDQIQSIETPIPTPEPQPVPDPIPQPVPTPEPQPVPTPIPQPVPTPIPQPVPSPIPQTIPEPK
>NZ_AP017375.1|WP_096379464.1|65051_65660_+|hypothetical-protein
MLSSTTWEIRWFQEGKIPLEVEQWFNDDCPGKLNSSPDARIDRYLFLPESETVNLKLRDENLEIKTRQAQLEERQFAQGCWQGKIEQWAKWVYRDLTQQKIIPLEVAYQRPWLSIYKKRQQRCYENIAAEITQLCVNNSLWWSLAFEMADIESRQYSDFCEGIESFSQLYPGSCLLNEQSYSYPHWLSKLEKYRSQNTLCQT
>NZ_AP017375.1|WP_096379462.1|61558_64672_-|response-regulator
MIERDSPFVGNSEMASLMRSLDWSATSLGSVEGWSQSLRISVSICLTSRFPILIWWGKELVMLYNDAYRPILGVTKHPQAMGQRGRDCWPEIWDVIGPMLEKVLTTGEATWSDDQLLLLNRNGYLEECYFTFSYSPIIDETGKIGGIFTAVTETTERVIGERRLRTLRELAAKTAEARTVEQAGYLSAQSLINSLADIPFALIYLLETDGNIARLVGRTGIEVGTPASPVQIDLTKSEAEQPWCFTEVQNTGEAQIINDLKTRFTALPRGSWSEPPHSAIVMPILQSGQKQQLVAFLILGISPRKEFDDQYRGFFELITSHVATAIADADTYAAERKRAEELAELDRAKTIFFSNISHEFRTPLTLMLGPLEDLLAENNSSLSQAHQEQLKIVHRNALRLLKLVNSLLDFSRIEAGRIQAIYEPTDLARLTTNLAGVFRSAIERVGLRFQVDCPPLPEPIYVDREMWEKIILNLLSNAFKYTFAGEICVNLRWVEVDESTFSQAGVELEVRDTGTGIAAEELPNIFKRFHRVQEAKGRTYEGSGIGLSLVKELVQLHGGTIEVTSVVEQGSSFKVFVPAGYAHLPSEHISKTSTTDSTTSRAIAYVEEALRWLPATENEASEIIPAEHNAIPFAPFSRRSLPIQKVDQPNLINNSSSTQVLLADDNADMRDYLTQLLSSQGYNVTVVGDGMAALATVNQFIPDLVLTDIMMPRLDGLGLLQKLRENPATREIPIILLSARAEEETRIQGLETGADDYLIKPFSARELLARVEATLKLYRVRQQAQLKLEAKARELSELNHSLEHINNQLSQRNQELNRFTYIVSHDLKAPLRAIANLSTWIEEDLAEQLPEENQNQMELLRQRVQLMEALIDGLLQYSRIGRIEVRAEKINLAQLLTEVIDSLTPPATFMIQIKSLIHTMTAKRLLLFQVFSNLISNAIKHHHRDDGIIEISAIETKDYYQFAVADDGPGIAPEHHSRIFDIFQTLQPLKGKENTGIGLSIIKKIIDTEGGEIVLESDLNQGAIFRFTWPKQVLTTD
>NZ_AP017375.1|WP_096379460.1|60625_61351_-|beta-propeller-domain-containing-protein,-methanol-dehydrogenase
MKFYSHKYSHNYLSLANWIVPILSILFAIFICATPVLATGVYDLPSPNTEDIWMVDQADEISLATQGKLSSSFQQLAKQTGQELRMVAIRRLDYGETIDSLADELFSTWYTTPEAQANQTLLVMDTLTNNVAIRTGAKAQQLVDPEITQSVIDETIGYNLRHGNKYNQALLDASDRLSAVLSGQPDPGPPAITEEIQVEGTFTKAEDTDDGSATIWVVVLLLLATVIPMVTYFWYVGFPGN
>NZ_AP017375.1|WP_096379457.1|59697_60519_+|hypothetical-protein
MSPQLTSLLRKSSLALSLVIMFSGANANALPTSNDNNLGNYNFKKLFQVISQSNTQPPEVIIDGNPNSGSSSTTRTTNSTYSTSSDTRFRCETVNGEYTVMYYPESRPEQAYPWAVPSQLGGGWTPENRCNEITRRLETYRQDGLLELTTGIENGYDTICVTTQVDPTNCKIVLTVPPGQDPQITRDQVFENLLVADDGQQTQGVYTYTENDGGDILNQIGNVLGGGKKPVASPKDIDLRPFLDPADGGTGTRLRTTSNSSSSTQERKPSIFK
>NZ_AP017375.1|WP_096379454.1|58993_59536_+|phycobiliprotein-lyase
MTSVGMTTKTLESLSLEFFQQSAGQWQSQRRYYTLNKETEPQEVESLITIKFLEQGAPELIELAKLHQLDNLEALIGGTKVTWSSNYTGTIRKPSNGSTVFGVWENKLYRDRGFATTEPIIATYYFTNPQTMCLRTEYNGSVFEEEIKLIGKSYRTRQSIISRAGQELMIGQYLEKRLEN
>NZ_AP017375.1|WP_096379451.1|58191_58851_+|HEAT-repeat-domain-containing-protein
MDLNLIQEYLSNSDSQKRMKAITELRNYETDIVVPLLKEKINDKEFLVRSFVAMGLGKKRNAESFAALLQMMKLDRDPNVRAEAANSLSLFGTVSVPHLVLMFEQDDHWLVRRSILPALAELECLEELLEICICGLHGEDQTVREACIDCLVRLANTSKQEEALAQLLALVTDERWRTRMRVARALAKFNTPQAQEALNRLRQDEDHRVVGAVLESLIS
>NZ_AP017375.1|WP_096379449.1|57485_58070_-|phycobilisome-protein
MLSDRVKELIQKSRIVSFANWHEQYPNEVIKIFQQADDQGSYLSDEDIKQIQSIAPQLTTSTAQAQLLRDRVENIVSQARAEVLAAYPQITEPGGDLYPPARAEACWRDFWHFLRCITYGIAGRSLEYTSPTGLGYMEQLYQELKVPLNAMVLGLEKLKYYSLQQFEEQEQTQLAPYFDHLIYKMKGFSDTTAV
>NZ_AP017375.1|WP_096379446.1|56339_57401_+|radical-SAM-protein
MVQTLTSSSTHLWLPKRVLVTPAALQESWGQKIIKRIESYQIPVEELPHNRLTNLKGKTGQETYAKAKRTLAIVTAPPSNFKLSPIPPSADWQFHLAQGCPAHCQYCYLAGSLSGVPITRVYTNLPEILDNLSQYETKDRETSFEVSCYTDPLGIEHLTGSLAECIRYFGTLPQARLRWVSKFDGVDGLLNLPHQGHTRCRMSINAAPISRSFEGGTASVTARLQALRKLALPTNQGGGGYPIGLVIAPIMAISNWQWHYTQLFEQISTRLDFNCDLTFELITHRFTPKSKEVLQSWYPGSKLDLNEETRSRKYNKFGGVKYVYDTETMKTLRSFIEQQIQERFPQAQILYWT
>NZ_AP017375.1|WP_096379443.1|53651_55325_+|hypothetical-protein
MNNQHRNFWFNLSLFVPIYFGLISLYYAFSNAYIVQDDARQHIVWLQRLINNQLFQYDLIANYFESVAPLGYKFFYWFGVKLGVAPLILAKFVPLFLAVIATVYVYKITIEIFPISVAGFWASLFFNQLIWLNDDLISATPRAFVYPLFTAFLYYVLKEKLFKLFIAIALIGLFYPQLLLVELAILTILLLSWHKNKIKFSRNQKYYLIWFGALMIACPILLSYALDRSDFAPVVTASQMQQMPEFRLHGRSQYFGTNPFIFYLMGKGGIGIPPLFPTGIWIGISLPWLLKSRLPLIELIQPKIKILKEVLFASLLMFILAHLLLPKLHLPSRYTYHSLRIVMAIASGIVLTVWLDRWKQLLRKNHKFLTILVKLSLVIIIIFPAIPPVFIGWFQNWQVGTAPEIYQFLAEQPPNTLVASLTRETNNIPAFSLRSVLVGREFALAYHTKYYQQFKRRAIDLIEAQYSPNSLKIKQVIQKYGIDYWLLENTSFQPNYLLQHDWLNYSSFHNSVNHANTNLKRGEVPALAQFIKDSKCISVTTQNLTLLNAECILKQSN
>NZ_AP017375.1|WP_096379470.1|69414_69897_+|hypothetical-protein
MVEWSKAFGNIPIYIHEKDRDWVTRRDNSITFWQGKTHQLNRELTLINCGGHFAGGTVLHWGNGAEGKGILLSGDIIQVVADCRYVSFMYSYPNLIPMSAEQVDRIVEAVEPFAFDCIYSAFTHREVTQDAKEALHRSATRYKQAIEGEWSPAISPNSNH
>NZ_AP017375.1|WP_096379473.1|69993_70719_+|hypothetical-protein
MLLKPEQLNHKSTEELKQELLQLVQDQDLQPLKQKVQFYEDQLAPIVTELSRRNPYPQAEDQLPIILGVWKPIWSSIPFQDILPGRSPEQSYQIFHDDGFYANIARYAPGSKLKLSWLQKLASILLAFDLMIVQKYAVKDGQWLIENIAIKQALRWQGIPLSVAKADHWFTKIVSQKTTTANEPEIENLNRSTAKRIKTAFRATPEFEHLYIDRDFRIVKTRREAKQRASYTIVVRREEKG
>NZ_AP017375.1|WP_096379475.1|70828_71041_-|hypothetical-protein
MSDHQKNQPIDLSESKKPSHFLEQEAEKQPESEVESNQDFTYEQQSENQLAHEQSITAFVPGGGAIADLD
>NZ_AP017375.1|WP_096379478.1|71155_73102_-|hypothetical-protein
MNTEQLKDAIATYLETSETEYAIMINGEWGSGKTYFWKETIESELENFNLISIYVSLYGLTSVEEIEQKIIYSLLNLSGKNTKNKYDLSPLLSEAPKYIFNIYNWLNEENKIDFKGTSFKPLVDLGSTFVKDFILNNTLFKCSEQYVFCFDDLERVDINRSNIFGYINKFVEHHHIKTVLISNEDQFCKEDEKEREYYKITKEKLVGYTFNIKPSFEDTIDQFIEGYDDSFKQIIRKHKALIIRLVEANGNKNLRIVKNCLSISNHIFQELNKIEYSITTINEELIRFIFAVNLEVKTGKADLDELFKLCTEGHQPFANIQSPRRNYRQYNSNKDITIETPKEESEEKKEYSEKFIHSYYIDFDGSHYDCSISYTKFTSIYNYIVKGYFDENKFKEEINERQNLENTPKLKLFNNYFELSNDEFEQVIKEYIDELKQDRINTLSNLIKLTEYLFYFASIKLIKKTKEQIKDIFKNTIKRQYKNNKLFYLNENIGNDYSILPEIEKKDKNYKYIIRFSKRVNKLLAKKQRYNNASQLIDLLEEGWQKFWDEICIGYQIKPIFAYLDVNKFASVLIKLENPVIVRFTRWIKNRYKTSNIKDFLSIEYQNLKQLNDLLKNYVEEHSNNKKLNHHLITELYEEIDRACEKLK
>NZ_AP017375.1|WP_096379481.1|73308_76014_-|PAS-domain-S-box-protein
MNFFSLDQILNRDPVIVNPTTPLIEIIGQMNQSSVANCNFNKDDYRLNQSPRFPADCILVMADSKLVGIFTKSDLVRLIAEDRTLAEMSIDEAMTQPVTTFLETEVQDLSAILNLINQHKIHHLPILDKDNQLLGIITHNSLLQALETKEMYGVDTLELDELYNHTPCGYHFLDSEGRFVRINDTELKMLGYSREEVLGRKFSDLITSESLITFQSNFPNLPERGWVRDIEFQLIRKNGTILPVALSATAVKDKTGNFLMSRSIVIDISERKQVEFALWETQHQLQAILNNSPAVIYLIDSENRHLLVNRSYAKLLSTTPESLSGKSIYQVWSTEFADTFAANNQQVLQGNQAIEVEEIVPHADELHTYITIKFPLHDAKGIPYAVCGISTDITERKLSEEKIREQATLIDIASDAIFVRDLSNQILFWNQGAERLYGWKAEEVRNRVVHELSSLESLVQLETALNITINQGKWNGELKQLTKDGREIIVASRWTLMYDQQNNPQSILVVNTDITEKKQLERQLLHAQRLESIGTLAGGIAHDLNNILTPIVSLAQLLPLKIPNLDESTLQLLTIVRNSALRGTEIIQQVLQFSRETETVWQSVILPQLLEEVLKLIRETFPKSIIIEEYISPNLWQVHGDSTQLNQVLMNLCVNARDAMPNGGKLVISAENIYLNKQYSGKNSKLEIGNYILITVTDTGIGIPKNIIDRIFDPFFTTKEPGQGTGLGLSTTIGIVKNHGGAIEVESEPEKGTQFQIYLPASEAIAITEAIFSKTIPVGQGELILVVDDEVPIREVTKATLETHNYQVITANDGLEAIAVYAQHHQVIEVVLMDLTMPEMDGLTAMRALKKINPHVKLIATSGLATKEKITTAESIGIKAFLVKPYTAEKLLLILSKAVGN
>NZ_AP017375.1|WP_096379483.1|76401_77904_+|glycerol-kinase-GlpK
MTNQTTKYILALDLGTTGNRAIIFDRDGKVAGQAYQELTQYYPQPGWLEHDPNQIWQDTLNCIQKVLKDNQISASALAAIGLTVQRETCLLWDKTTGQPLHKAIVWQDRRTAKLCNQLKEQGKASEIQERTGLVLDAYFSATKLAWLLDWVKQNHSQIDWDNVLAGTVDTWILWNLTGGKVHATDHSNASRTMLMNLETLDWDKTLLGLFGIPKQIMPKIQPSMGSFGQTDSEIIGAAIPITAIFGDQQAALFAHGCDRPGLLKCTYGTGCFLVAQAGEQITRSQNQLLSTVAWTKQDGKANFALEGAMFTTGACIQWLRDGLQLIDSAAETDTLSRQVSDTNGVYFVPALSGLGAPHWDMNARGAFFGITGGVKREHMVRAVLEAIAYQVKEVVDAINLDCDAPVALLKVDGGAAQNDFLMQFQADVLGIPVERPAIVDATAQGAAFGAGLVVGFWNDYSSLVSNSAVDRIFRPSKDSADTQANFKIWQKAVARAKNWI
>NZ_AP017375.1|WP_096379486.1|78058_78949_+|NAD(P)-dependent-oxidoreductase
MTNKKIAFLGLGLMGGAMAANIARRGYRVKAWNRTKNRPGIATAAEAGATIVDSIQSAVADAEIIFSCVGDVPDVEEVLLGKSGVIQYAQPSALVVDMSTIGSQAAKEMASQLNQHQLRFLDAPVSGGDIGAINGTLTIMVGGEPQDFAECQPLFEAMGQNIRLCGLVGSGQGVKMCNQILCSLYMVGLCEAMTMAKKQGIDPNLIVEVCGTGAAGSWALANLGPKIIESDYNPGFAIKHILKDLRLVQEIIQASGENLPGVQLADRLFKLVQTLDNGQGGEQGTQAMIRAYDSEQ
>NZ_AP017375.1|WP_096379489.1|79014_79617_+|cob(I)yrinic-acid-a,c-diamide-adenosyltransferase
MTTDEQYKQKMQRRKEVQEQRLAEKNLEKGLIIVNTGNGKGKTTAALGMVLRSLGHGYKVAIIQFIKGAWEPAEKAVLEQWQGQLQFHAMGEGFTWETQDRERDTEKAIAAWQKGLEYILNPEYKLVLLDEINVALKLGYLDVAEVLAGLAQKPANSHVILTGRGAPPELIEQADLVTEMTLVKHPFREQGVKAQPGIEF
>NZ_AP017375.1|WP_096379491.1|79628_80150_-|hypothetical-protein
MSSSKDYRREIMNDLAQGDVESLDDAPVDPQKDYQNFDDFAQRSTRQERHGLFSRAFRPDRIPPAQMEPELQQAIAQIKPNERDDVAREFFKHFKQRGLSDRDLERQLGLSTHHASRMNADDVTKLASFAYHSHPDIFQDVMADQPALVKFLSNPVIGAVLGAVAAKWLGNKR
>NZ_AP017375.1|WP_096379494.1|80210_80642_-|hypothetical-protein
MNFWQRSRKIIAAIVLCLTLTITTACASAPVAKEVNQLPAANGQLYSQLERGNSTTGQKFGDWAVQTSQGLISDAYVRDNNKLGVVINKQVQPNEVRPLAKSLLQGFHRNFPNQDVTVLMYAPDKKLILTARYDEQSRQVQYQ

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Crispr_ID: NZ_AP017375_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP017375_2

731807-731918

TypeV-U5?,TypeI-A

Consensus_repeat	Method
TTTCAACATCTCCCACTTAGGGAGAGTCGAAGCAAC	CRISPRCasFinder

1 spacers

csa3,c2c5_V-U5

The CRISPR arrays of NZ_AP017375_2

>merge|NZ_AP017375|2|731807-731918|CRISPRCasFinder
TTTCAACATCTCCCACTTAGGGAGAGTCGAAGCAACCCAAAATTGACTTCCAATTCGACTGCTTCAATATCTGTGCTTTCAACATCTCCCACTTAGGGAGAGTCGAAGCAAC

>NZ_AP017375|2|2|731807-731918|CRISPRCasFinder
TTTCAACATCTCCCACTTAGGGAGAGTCGAAGCAAC	CCAAAATTGACTTCCAATTCGACTGCTTCAATATCTGTGC
TTTCAACATCTCCCACTTAGGGAGAGTCGAAGCAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP017375.1\|WP_096380903.1\|731185_731347_-\|metallothionein	unknown	unknown	gnl\|CDD\|366903
NZ_AP017375.1\|WP_015192773.1\|727623_727872_-\|30S-ribosomal-protein-S16	unknown	unknown	gnl\|CDD\|176950
NZ_AP017375.1\|WP_096380906.1\|733531_734038_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379228
NZ_AP017375.1\|WP_096380913.1\|735579_735816_+\|hypothetical-protein	c2c5_V-U5	-	unknown
NZ_AP017375.1\|WP_096380917.1\|736130_736451_+\|hypothetical-protein	c2c5_V-U5	-	unknown
NZ_AP017375.1\|WP_096387731.1\|730727_731120_-\|helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|197713
NZ_AP017375.1\|WP_096380886.1\|724456_725341_+\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	unknown	unknown	gnl\|CDD\|234626
NZ_AP017375.1\|WP_096380897.1\|727969_729391_-\|signal-recognition-particle-protein	unknown	unknown	gnl\|CDD\|236780
NZ_AP017375.1\|WP_096380910.1\|734025_734292_-\|DUF1778-domain-containing-protein	unknown	unknown	gnl\|CDD\|226860
NZ_AP017375.1\|WP_096387729.1\|725901_726015_-\|cytochrome-B6	unknown	unknown	gnl\|CDD\|285308
NZ_AP017375.1\|WP_096380900.1\|729775_730702_-\|nucleoside-hydrolase	unknown	unknown	gnl\|CDD\|239113
NZ_AP017375.1\|WP_096380923.1\|738643_740803_+\|cellulase	unknown	unknown	gnl\|CDD\|376383
NZ_AP017375.1\|WP_096380895.1\|727217_727631_-\|KH-domain-containing-protein	unknown	unknown	gnl\|CDD\|224750
NZ_AP017375.1\|WP_096380920.1\|737780_738284_+\|DNA-recombination-mediator-protein-A	unknown	unknown	gnl\|CDD\|376794
NZ_AP017375.1\|WP_096380892.1\|726171_727221_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|235066
NZ_AP017375.1\|WP_096380890.1\|725375_725699_-\|YnfA-family-protein	unknown	unknown	gnl\|CDD\|235016
NZ_AP017375.1\|WP_096380925.1\|741138_744063_+\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|380161
NZ_AP017375.1\|WP_096387733.1\|734419_735175_+\|IS982-family-transposase	unknown	unknown	gnl\|CDD\|372648
NZ_AP017375.1\|WP_096380929.1\|744289_745654_+\|NAD-dependent-succinate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143418
NZ_AP017375.1\|WP_096380933.1\|745800_746499_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816

Protein	Function_ID	Function_description	E-value
NZ_AP017375.1\|WP_096380903.1\|731185_731347_-\|metallothionein	gnl\|CDD\|366903	pfam02069, Metallothio_Pro, Prokaryotic metallothionein.	4.32708e-17
NZ_AP017375.1\|WP_015192773.1\|727623_727872_-\|30S-ribosomal-protein-S16	gnl\|CDD\|176950	CHL00005, rps16, ribosomal protein S16.	1.26082e-39
NZ_AP017375.1\|WP_096380906.1\|733531_734038_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	3.8949e-06
NZ_AP017375.1\|WP_096380929.1\|744289_745654_+\|NAD-dependent-succinate-semialdehyde-dehydrogenase	gnl\|CDD\|143418	cd07100, ALDH_SSADH1_GabD1, Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 1-like. Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde (SSA) to succinate. SSADH activity in Mycobacterium tuberculosis (Mtb) is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb GabD1 SSADH1 reportedly is an enzyme of the gamma-aminobutyrate shunt, which forms a functional link between two TCA half-cycles by converting alpha-ketoglutarate to succinate.	0
NZ_AP017375.1\|WP_096387731.1\|730727_731120_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197713	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor.	6.76871e-18
NZ_AP017375.1\|WP_096380886.1\|724456_725341_+\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	gnl\|CDD\|234626	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed.	1.15333e-143
NZ_AP017375.1\|WP_096380897.1\|727969_729391_-\|signal-recognition-particle-protein	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
NZ_AP017375.1\|WP_096380910.1\|734025_734292_-\|DUF1778-domain-containing-protein	gnl\|CDD\|226860	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown].	2.33521e-18
NZ_AP017375.1\|WP_096387729.1\|725901_726015_-\|cytochrome-B6	gnl\|CDD\|285308	pfam08041, PetM, PetM family of cytochrome b6f complex subunit 7. This family consists of the PetM family of cytochrome b6f complex subunit IV. The cytochrome b6f complex consists of 7 subunits and contains 2 beta hemes and 1 chlorophyll alpha per cytochrome f. It is highly active in transferring electrons from decylplastoquinol to oxidized plastocyanin.	2.47152e-06
NZ_AP017375.1\|WP_096380900.1\|729775_730702_-\|nucleoside-hydrolase	gnl\|CDD\|239113	cd02647, nuc_hydro_TvIAG, nuc_hydro_ TvIAG: Nucleoside hydrolases similar to the Inosine-adenosine-guanosine-preferring nucleoside hydrolase from Trypanosoma vivax. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. Nucleoside hydrolases vary in their substrate specificity. This group contains eukaryotic and bacterial proteins similar to the purine specific inosine-adenosine-guanosine-preferring nucleoside hydrolase (IAG-NH) from T. vivax. T. vivax IAG-NH is of the order of a thousand to ten thousand fold more specific towards the naturally occurring purine nucleosides, than towards the pyrimidine nucleosides. .	1.63186e-97
NZ_AP017375.1\|WP_096380923.1\|738643_740803_+\|cellulase	gnl\|CDD\|376383	pfam00759, Glyco_hydro_9, Glycosyl hydrolase family 9.	3.75971e-152
NZ_AP017375.1\|WP_096380895.1\|727217_727631_-\|KH-domain-containing-protein	gnl\|CDD\|224750	COG1837, COG1837, Predicted RNA-binding protein (contains KH domain) [General function prediction only].	6.00761e-18
NZ_AP017375.1\|WP_096380920.1\|737780_738284_+\|DNA-recombination-mediator-protein-A	gnl\|CDD\|376794	pfam02481, DNA_processg_A, DNA recombination-mediator protein A. The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In H. pylori, dprA is required for natural chromosomal and plasmid transformation. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyze the homology-dependent formation of joint molecules. While the E.coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation.	0.00662038
NZ_AP017375.1\|WP_096380892.1\|726171_727221_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|235066	PRK02746, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase PdxA.	0
NZ_AP017375.1\|WP_096380890.1\|725375_725699_-\|YnfA-family-protein	gnl\|CDD\|235016	PRK02237, PRK02237, YnfA family protein.	3.82795e-45
NZ_AP017375.1\|WP_096380925.1\|741138_744063_+\|PAS-domain-S-box-protein	gnl\|CDD\|380161	NF033092, HK_WalK, cell wall metabolism sensor histidine kinase WalK. This model describes WalK as found in Staphylococcus aureus (sp\|Q2G2U4.1\|WALK_STAA8). A shorter version, as found in Streptococcus pneumoniae, called WalK(Spn) or VicK, is not included. WalK is part of a two-component system and works with partner protein WalR.	1.49539e-64
NZ_AP017375.1\|WP_096387733.1\|734419_735175_+\|IS982-family-transposase	gnl\|CDD\|372648	pfam13612, DDE_Tnp_1_3, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contains three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	2.02532e-94
NZ_AP017375.1\|WP_096380933.1\|745800_746499_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	5.66054e-95

>NZ_AP017375.1|WP_096380903.1|731185_731347_-|metallothionein
MSTVTSMKCACDRCLCVVSLEDAVKKDGKYYCCEACANGHVEGSGCGHQGCGC
>NZ_AP017375.1|WP_096387731.1|730727_731120_-|helix-turn-helix-transcriptional-regulator
MSIVESPTVPTCQSSHLVEGDRIKQLEQETLQPEKAQCMAEFFRLLGDANRLRILSVLAKQKLCVCDLAAILEMSESAVSHQLRTLRSLRLVNYQKQGRKVYYDLQDHHVLDLYNSVAEHLDESETEELS
>NZ_AP017375.1|WP_096380900.1|729775_730702_-|nucleoside-hydrolase
MTKKLVLMDHDGAIDDFLATILLLTMAEVEPIGIVVTPADCYPLAAVSVTRKILDLMGKSHIQVAASTVRGINPFPPEFRRDCTIIDNFPILNEPEQIETPLVTESGQEFIIKQLQAASQPVTLMVTGPLTTVAEAIVLQPEIIAKIEALVWMGGALTVDGNVEKGFALEHDGSAEWNVFWDPIAAKQIWETSIPIILCPLDLTNTVPVTPEFIRLLTKQRQYPLSDLAGMFYALAIPQAYYCWDILATAYLARPEFYHLQTYATDIITEGTSQGRTVLQAGGKTIQVMTKVDKQRFYNYLLEQLKST
>NZ_AP017375.1|WP_096380897.1|727969_729391_-|signal-recognition-particle-protein
MFDALAERLEDAWKKLRGQDKISKSNIQDALKEVRRALLEADVNLQVVKNFIAEVEQEANGAEVISGVNPGQQFIKIVYDELVKVMGESNVPLAQADKAPTIILMAGLQGTGKTTATAKLALYLQKQEQTCLMVGTDVYRPAAIDQLLTLGKQINVPVFEMGTDANPVEIARQGIEKAKELGVDTVLIDTAGRLQIDQDMMAELAQIKETVQPHDTLLVVDAMTGQEAANLTRTFHEQIGITGAILTKLDGDSRGGAALSVRQVSGQPIKFVGVGEKVEALEPFYPDRLASRILNMGDILTLVEKAQEEIDLADMENMQSKILEARFDFNDFLKQMRLLKNMGSLGGVLKLIPGMNKISGADLQKGETQLKRTEAMINSMTKEERSNPELLAQSPSRRRRVAKGSGFEETDVSKLIKDFTRMRSLMQQMGKGMPAIPGMGGMPGMGGMPGFRGYQGGSKKKKKTKKKKGFGSL
>NZ_AP017375.1|WP_015192773.1|727623_727872_-|30S-ribosomal-protein-S16
MVKLRLKRFGKKREVSYRIVAISSRTRRDGRPLEELGFYNPRTDETRLNVPAIVKRLQDGAQPTDTVRNILEKAKIFEQVHA
>NZ_AP017375.1|WP_096380895.1|727217_727631_-|KH-domain-containing-protein
MPNKTTLSEKKNNTSPDYIGLVQFLIEPFLDDPKSLSVDCEEISSKQKVWLRVAFDLNDKGKVFGRGGRNIQAVRTVLNTAATAVGQSIYLDVYSDRDDQPNSSFPLNRGQNRDRKPSNFKGKKPMGKTRFRRSESG
>NZ_AP017375.1|WP_096380892.1|726171_727221_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MFQLPHLAITFGDPAGIGGEIILKALADSSLTENCQITIIGSRDYLQTTYEHLQQNSNLKSEDLANPENLDIIDLPSSAPLTFGQGNADTGAASFNYLQEAITLTLQGKFQAIVTAPIAKSLWKAAGYNYPGQTEVLATRAGVDKFGMLFVAKSPHTGWILRTLLATTHIPLAKVPSALNPQLMSLKLELLIECLHQDFGIGNPTIAIAGLNPHSGEAGQLGSEEKQWLQSWLEEERLKRPQTKLIGLVPPDTMWVQPGQAWYGNHDEQIKLQTADAYLALYHDQGLIPVKLMAFDRAINTTIGLPFIRTSPDHGTAFDLAGKGMANPNSMKAAIQLGVELATIRNKAS
>NZ_AP017375.1|WP_096387729.1|725901_726015_-|cytochrome-B6
MSAESMLFNGVILCIVLVLVGLAWGFLLLKIQGGEAE
>NZ_AP017375.1|WP_096380890.1|725375_725699_-|YnfA-family-protein
MIQSLLFFVIAGFCEIGGSYLFWLWLREGKSFCLAILGIIILAIYGIVPTLQPVNFGRAYAAYGGIFIILSILWGWVVDRVTPDKYDWLGGWIALLGVLVIMYAPRH
>NZ_AP017375.1|WP_096380886.1|724456_725341_+|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA
MLIVICGATASGKSGLALKLAQRLNTIIISADSRQVYREFDIGTAKPSVTEQKLVPHYLIDICEPTENFTLAEYQLKAQNLIDNFADYPPLLVGGTGLYIKSITKGLKIPRVSPQPQLRSQMIALGQTQLYGWLTQVDPIAAKKIHPNDQVRTLRALEVFYVTGKPISEQQGENPPHYPILQIGLDGEVAELDRRIEIRTHQMIELGLVKEVEYLIQKYGQDLPLLNTLGYAEIKQYLAGELSLTEAIDLTILHTRQFAKRQRTWFRAYPEIEWFDVNNPNLLELVWQRIKEFK
>NZ_AP017375.1|WP_096380906.1|733531_734038_-|GNAT-family-N-acetyltransferase
MGTVNYSPPQRISSEHIITDFDCGEESLNEWLKKRALKNDVADASRTYVVCCDNVVVAYYSLHLGCVQHSEAVGKIKRNMPDPIPAIVLGRLAVDVNHQGQGLAHDLMKDMFLRAIAVSDLAGTKAVLVKALNDKVSTFYQSFGFIQSKTDPLLLMKAVAEVKASLKQ
>NZ_AP017375.1|WP_096380910.1|734025_734292_-|DUF1778-domain-containing-protein
MGAMQKQKVVNLRVEESRQNLIDEAARLQGKSRTEFMIEAAYKEAEQTILDQKIFILDEADYEYLTRTDHQADPKLVKLFERKSLWEQ
>NZ_AP017375.1|WP_096387733.1|734419_735175_+|IS982-family-transposase
MTIVIAFHGSGYRTFKEFYTLQVRPHWKKAFPSLVSYNRFVELMPWSMMLLCYFLQTRKGEVTGISFIDSTPIEVCCPSRSRSHRVFEGLVGWGKNSVGWHYGFKLHLIINDQGELLAFKLTPRNTDDRKPVPDLTQDIIGKLFGDRGYISQELFEKLDEQGLQLITRHKKNMKQKLVKLMDKILLRKRSLIETVNDQLKNISQIEHSRHRSVWNFMVNLFGGLIAYIYLPQKPSLDLEPKGLPALPPALF
>NZ_AP017375.1|WP_096380913.1|735579_735816_+|hypothetical-protein
MRVAMGLDKPATVAIVDGNTGKVIVYRSIKQLLGENYRLLNRQRQQKQALSLFCHFPKTFVISKVYNPYQQNDSLVIY
>NZ_AP017375.1|WP_096380917.1|736130_736451_+|hypothetical-protein
MELAQQDRVSAIAVPKIEDIREITQAEIKAKAEAKIPGYEEGQKKYALAYRINIHNWSYGRLIENISTQANKLGIAIVEVKQPIRGSPTQKAQAMAISAHQAFNKT
>NZ_AP017375.1|WP_096380920.1|737780_738284_+|DNA-recombination-mediator-protein-A
MSQSLDITTIDTLTQELAAIQQTGSRRIALLGSRHVPIMHQQLIEMMSYALALAGNRIVTSGATGTNSAAIKGVMRADPNLLTVILPQTLERQPKESQEQLKQVIHLVENSENNHLSLGEASALCNREIITRCQQLICFAFHDSHTLLQSCAEAEEQRKLVTLFYFD
>NZ_AP017375.1|WP_096380923.1|738643_740803_+|cellulase
MNNVAKNNSIIKDINFEIVQDWSGGFKAELNFSSEKAITEGWQLKFSAPFEIKEIYGAELVKTENNQYTIGNLDWNEKLAANSTQKIIIIANDFGQPAQKATDFELLGDNQPTGQPVEPINNQTTLKDINFEIVQDWSGGFKAELNFSSEKAITEGWQLKFSAPFEIKEIYGAELVKTENNQYTIGNLDWNEKLAANSTQKIIIIANDFGQPAQKATDFELLGDNQPAGQTVQPIPSEPEEPVTPEQPPIPDPEPKPSENPNGTGQFRYGEALQKSILFFEANRSGGLPNDKRIEWRSDSALSDGSDVGRDLTGGYYDAGDHVKFGLPMSANNTMLAWGGIEYESAYKQSGQWDELLDAVKWGTDYFLKAHVSEGGKTKELYVQVGDGHADHAYWGPPENMTMARPSFKIDPANPGSDAAAGTASALASASILFRGVDDAYSEKLLDHAKQLFEFADTYRGKYSDSVQAANPFYTSFSGYADELAEGAAWLYKATGDQKYLTRAEDIYDNEYGYPSDWTWMADNKSNSAAVLLAQESSDPKYKQMVEGWLENWINGTGNVQYSEGGLAWRTRWGSLALASATSYLAQLYNDTVKQDSRYSDFANNQIDYILGDNPRNASYVIGFGENYPLQPHHRAAAGNAPYGQPSEHILFGALVGGPGSTNDFDYNDDRNDWVTNEVGTGYNAPLTSALIQQYNNFGGDPLSNAELDALPGIVVAEV
>NZ_AP017375.1|WP_096380925.1|741138_744063_+|PAS-domain-S-box-protein
MSGESQFWSSFPLEELFDLDPLIVQPNQLLSEVIEQMQNKKTSSEVTHQTKKYVLVNDNTSLLGIVTEVELIKIIAFRKDWQNTKIGDAIIQPSISFQLEDIPELDRLIDYFTRYQTCYLPIVDQFHQLIGVISQHKVLSALSNSIEFNKNQTLQQEKAFLQAVLNNVSALVVVLDRQGQIINFNRSCEQLTGYSLAEVKQQKVWNLLLIPDEINAFKAVFNQLLTGQVPNQYENHWITKEGDRRLITWSNTALFDHQSKVEYIIATGIDITERKEAEARLESQHRQTQLLAEITRKIRQSLRLDEIMQTAVTEVQQLLACDRVLIVKLQSNQTVLSVSESVLPELPSLLGWEISDPLLQNNYLEQYRRGEILALTDLTQANLSSEIKNLLKQFAIQAKLVVPILTQDQLKGLLIVHQCNYCRNWQSWEIDLLKQIADQIGVALSQAQLLNNLEELVQERTFKLTETNQKLEQEIQKHQETETALRESQQKLAGILDIAEEAIIAIDEQQQIQIFNQGAEKIFGYTATEILGEKLDLLLPEAFRSIHRQHVKNFGNSETISRRMAERSTTVVGLRKNGTQFPAEASISKLHSYQRQDAEGAKSGLIFTVILKDITQRQQAEAALRRSEEQLRLITNALPILIAYLDVEQRYRFNNRAHEDWFARYCSQINGCHLQEVMGETAYQQVSPYVEMVLSGQPVTFELELSCSDGKSRWINANYIPDFSSSGKIKGFFSMISDITERIAVERMKSEFVSVASHEMRTPLTSIYGVIRLLAAGRLGELSPTAQNMIEIAAKNTNRLTRLIDDVLDLERMESGREVIEKQICNVAELVQQAIETMTAMAKEYQITLSSQATNLQIWADSDKILQTLTNLISNAIKFSPPHSQIVITVEQQANEVIFQVSDRGRGIPADKLESIFERFQQVDASDSREKGGTGLGLAICRHIVQQHGGKIWVESILGKGSTFYFTLPVNPTL
>NZ_AP017375.1|WP_096380929.1|744289_745654_+|NAD-dependent-succinate-semialdehyde-dehydrogenase
MAIATINPATGEKLKTFNALTDAEIEAKLTLAAEAFDSYRHQPMAQKSQWLNRAAEILEQDKLQFAKIMTIEMGKPIKGAIAEVEKCAWVCRFYAEKAEEFLADAYIASDATRSFVAYQPLGAILAVMPWNFPFWQVFRFAAPALMAGNVGILKHASNVPQCALAIEEIFQQAGFPNGVFQTFLVGADRVEELIKDNRIKAATLTGSEPAGMALAAAAGKQIKKTVLELGGSDPFIVLESADLEQAVATAVTARMLNNGQSCIAAKRFIVAESIYERFTTELVAKYHALKVGDPMEQDTDIGPLATTKILTELDQQVQETVRLGAKVLIGGKPADLLGNFYLPTILSEIPAGSPGASEEFFGPVALLFRVKNIDEAIKLANHSSFGLGASAWTNDPQECDRLVREIEAGAVFINGLVKSDPRLPFGGTKRSGYGRELGIQGIHEFVNIKTVWIK
>NZ_AP017375.1|WP_096380933.1|745800_746499_-|response-regulator-transcription-factor
MNILVVEDELEIAQLIKQTLEQESFSCELAHNGLVALEKFQQQQPDLIVLDLMLPGLDGLELCTRIRQQSYGKDPYILMLTARGEEIDRVIGLSTGADDYLVKPFSPRELVARVRALLRRSLRHGSSNSQIYQSKHFTLDLDQHLATRQLDQSSETLDLTTLEFNLLATFMSYPGRVWSRTQLIDQLWGNDFFGDERVVDTHIRRLRKKIEPDAAHPTFIKTVIGVGYKFED

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Click the colored protein region to show detailed information

Crispr_ID: NZ_AP017375_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP017375_3

1999408-1999509

Orphan

Consensus_repeat	Method
AAATACTTATCAATCTCCTAATCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP017375_3

>merge|NZ_AP017375|3|1999408-1999509|CRISPRCasFinder
AAATACTTATCAATCTCCTAATCAACAGTTTGTTTCTGCAAACAGTATTGCCTCAACATTTAGTCAACAAAGCAAAGAAAATACTTATCAATCTTCTAATCA

>NZ_AP017375|3|3|1999408-1999509|CRISPRCasFinder
AAATACTTATCAATCTCCTAATCA	ACAGTTTGTTTCTGCAAACAGTATTGCCTCAACATTTAGTCAACAAAGCAAAGA
AAATACTTATCAATCTTCTAATCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP017375.1\|WP_096383724.1\|2010860_2011496_-\|L-threonylcarbamoyladenylate-synthase	unknown	unknown	gnl\|CDD\|223088
NZ_AP017375.1\|WP_096383694.1\|1993251_1993980_-\|LPS-export-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224060
NZ_AP017375.1\|WP_096383699.1\|1995028_1995385_-\|ferredoxin--nitrite-reductase	unknown	unknown	gnl\|CDD\|214382
NZ_AP017375.1\|WP_096383720.1\|2008787_2009216_+\|Photosystem-I-reaction-center-subunit-II	unknown	unknown	gnl\|CDD\|367117
NZ_AP017375.1\|WP_096383715.1\|2004726_2005272_-\|late-competence-development-ComFB-family-protein	unknown	unknown	gnl\|CDD\|378482
NZ_AP017375.1\|WP_096383713.1\|2003991_2004648_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|236608
NZ_AP017375.1\|WP_096383710.1\|2002805_2003144_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017375.1\|WP_096383698.1\|1994626_1995022_-\|DUF309-domain-containing-protein	unknown	unknown	gnl\|CDD\|377120
NZ_AP017375.1\|WP_096383701.1\|1995579_1996242_+\|ComF-family-protein	unknown	unknown	gnl\|CDD\|223970
NZ_AP017375.1\|WP_096383719.1\|2006612_2008688_+\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|226701
NZ_AP017375.1\|WP_096383708.1\|2001266_2002451_+\|NAD(P)H-quinone-oxidoreductase-subunit-H	unknown	unknown	gnl\|CDD\|180969
NZ_AP017375.1\|WP_096383691.1\|1991074_1991962_-\|class-D-beta-lactamase	unknown	unknown	gnl\|CDD\|225322
NZ_AP017375.1\|WP_096383693.1\|1992043_1993210_-\|YjgP/YjgQ-family-permease	unknown	unknown	gnl\|CDD\|367632
NZ_AP017375.1\|WP_096383705.1\|1997062_1998082_+\|GTPase-ObgE	unknown	unknown	gnl\|CDD\|237048
NZ_AP017375.1\|WP_096383717.1\|2005432_2006287_-\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|366703
NZ_AP017375.1\|WP_096383722.1\|2009315_2010845_+\|anthranilate-synthase-component-I	unknown	unknown	gnl\|CDD\|223225
NZ_AP017375.1\|WP_096383703.1\|1996309_1996981_+\|nitrogenase	unknown	unknown	gnl\|CDD\|369150
NZ_AP017375.1\|WP_096383696.1\|1994010_1994502_-\|OstA-family-protein	unknown	unknown	gnl\|CDD\|224845
NZ_AP017375.1\|WP_096383711.1\|2003353_2003875_-\|Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379219
NZ_AP017375.1\|WP_096383689.1\|1990503_1990983_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181

Protein	Function_ID	Function_description	E-value
NZ_AP017375.1\|WP_096383724.1\|2010860_2011496_-\|L-threonylcarbamoyladenylate-synthase	gnl\|CDD\|223088	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis].	1.80713e-33
NZ_AP017375.1\|WP_096383694.1\|1993251_1993980_-\|LPS-export-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224060	COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only].	4.10116e-137
NZ_AP017375.1\|WP_096383699.1\|1995028_1995385_-\|ferredoxin--nitrite-reductase	gnl\|CDD\|214382	CHL00165, ftrB, ferredoxin thioreductase subunit beta; Validated.	1.2102e-61
NZ_AP017375.1\|WP_096383720.1\|2008787_2009216_+\|Photosystem-I-reaction-center-subunit-II	gnl\|CDD\|367117	pfam02531, PsaD, PsaD. This family consists of PsaD from plants and cyanobacteria. PsaD is an extrinsic polypeptide of photosystem I (PSI) and is required for native assembly of PSI reaction clusters and is implicated in the electrostatic binding of ferredoxin within the reaction centre. PsaD forms a dimer in solution which is bound by PsaE however PsaD is monomeric in its native complexed PSI environment.	2.92171e-100
NZ_AP017375.1\|WP_096383715.1\|2004726_2005272_-\|late-competence-development-ComFB-family-protein	gnl\|CDD\|378482	pfam10719, ComFB, Late competence development protein ComFB. This family is conserved in bacteria. Some members, with three conserved cysteines, are annotated as late competence development protein ComFB.	8.76611e-20
NZ_AP017375.1\|WP_096383713.1\|2003991_2004648_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|236608	PRK09652, PRK09652, RNA polymerase sigma factor RpoE; Provisional.	1.87203e-82
NZ_AP017375.1\|WP_096383711.1\|2003353_2003875_-\|Fis-family-transcriptional-regulator	gnl\|CDD\|379219	pfam13490, zf-HC2, Putative zinc-finger. This is a putative zinc-finger found in some anti-sigma factor proteins.	0.000138038
NZ_AP017375.1\|WP_096383698.1\|1994626_1995022_-\|DUF309-domain-containing-protein	gnl\|CDD\|377120	pfam03745, DUF309, Domain of unknown function (DUF309). This domain is found in eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.	1.78617e-29
NZ_AP017375.1\|WP_096383701.1\|1995579_1996242_+\|ComF-family-protein	gnl\|CDD\|223970	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only].	1.91464e-44
NZ_AP017375.1\|WP_096383719.1\|2006612_2008688_+\|GAF-domain-containing-protein	gnl\|CDD\|226701	COG4250, COG4250, Predicted sensor protein/domain [Signal transduction mechanisms].	1.20247e-72
NZ_AP017375.1\|WP_096383708.1\|2001266_2002451_+\|NAD(P)H-quinone-oxidoreductase-subunit-H	gnl\|CDD\|180969	PRK07415, PRK07415, NAD(P)H-quinone oxidoreductase subunit H; Validated.	0
NZ_AP017375.1\|WP_096383691.1\|1991074_1991962_-\|class-D-beta-lactamase	gnl\|CDD\|225322	COG2602, COG2602, Beta-lactamase class D [Defense mechanisms].	3.1777e-90
NZ_AP017375.1\|WP_096383693.1\|1992043_1993210_-\|YjgP/YjgQ-family-permease	gnl\|CDD\|367632	pfam03739, YjgP_YjgQ, Predicted permease YjgP/YjgQ family. Members of this family are predicted integral membrane proteins of unknown function. They are about 350 amino acids long and contain about 6 transmembrane regions. They are predicted to be permeases although there is no verification of this.	1.59034e-74
NZ_AP017375.1\|WP_096383705.1\|1997062_1998082_+\|GTPase-ObgE	gnl\|CDD\|237048	PRK12299, obgE, GTPase CgtA; Reviewed.	0
NZ_AP017375.1\|WP_096383717.1\|2005432_2006287_-\|M23-family-metallopeptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	7.5404e-36
NZ_AP017375.1\|WP_096383722.1\|2009315_2010845_+\|anthranilate-synthase-component-I	gnl\|CDD\|223225	COG0147, TrpE, Anthranilate/para-aminobenzoate synthases component I [Amino acid transport and metabolism / Coenzyme metabolism].	0
NZ_AP017375.1\|WP_096383703.1\|1996309_1996981_+\|nitrogenase	gnl\|CDD\|369150	pfam06967, Mo-nitro_C, Mo-dependent nitrogenase C-terminus. This family represents the C-terminus (approximately 80 residues) of a number of bacterial Mo-dependent nitrogenases. These are involved in nitrogen fixation in cyanobacteria. Note that many family members are hypothetical proteins.	1.2028e-59
NZ_AP017375.1\|WP_096383696.1\|1994010_1994502_-\|OstA-family-protein	gnl\|CDD\|224845	COG1934, COG1934, Uncharacterized protein conserved in bacteria [Function unknown].	3.54857e-22
NZ_AP017375.1\|WP_096383689.1\|1990503_1990983_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	8.00108e-16

>NZ_AP017375.1|WP_096383705.1|1997062_1998082_+|GTPase-ObgE
MQFIDLAEIEVIAGKGGDGIVAFRREKYVPAGGPAGGNGGKGGSIILLAAENLQTLLDFRYARQFKAEDGKRGGPNNRTGAQGSDRIIEVPCGTMIYDADTEELLGDLVNAGDTLCVAEGGKGGLGNKYFLSNRNRAPEHALPGLPGEERRLRLELKLIAEVGIIGLPNAGKSTLISALSSARPKIADYPFTTLIPNLGVVKKPTGDGTVFADIPGLIAGASEGIGLGHDFLRHIERTRLLLHLIDATAEEPISNYQTIQAELIAYGRGLAQRPQIIAFNKIDAVEPEILASAIAEMKELTSDPIFAISAATRSGLDNLLQTVWSTLETTESSLEMSPN
>NZ_AP017375.1|WP_096383703.1|1996309_1996981_+|nitrogenase
MTSTTQSIYTDSQIVAWLRGLYTIAWSDGHYAPEEEELIAQLTKELANLNNVERLEPIKPEELATALGKDPETAENFLRTAVLVAVADGVYSTPEYELLQQFSRALDLEIEALKSLENTLYRPEETNAERISKQTQPRLDVLHPVKDWLDGMEVQDPRLARFVCKVIPPQCPFERDINLFGRKIAHIPPLCKLNPLYEQLVSLRFRSLSYLADDCGEDISEYI
>NZ_AP017375.1|WP_096383701.1|1995579_1996242_+|ComF-family-protein
MLKSLLSLFLQSSCCLCQRHSAMSLCQFCQKQVQNFQLSNSSSKWSGNLPYFAWGKYEGQLKQTLSKLKYDRQAELGILLGQWLGQAWLDSSIAKNTSKLIVIPIPLHPDKQKIRGFNQAELIAKGFCQQTGDRLSSNALIRIKDTPALFGLTPYQRKQNLQDAFALGKTWQLQPPQLPVLFIDDIYTTGTTVQQAATVLRKHNIKVYGVAVIATPKFTS
>NZ_AP017375.1|WP_096383699.1|1995028_1995385_-|ferredoxin--nitrite-reductase
MSTATDQDKTLESMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGAPLCPCRHYEDKKAEVKNTFWNCPCVPMRERKECHCMLFITDDNEFAGDQQAIDLELIKEVRDSMNA
>NZ_AP017375.1|WP_096383698.1|1994626_1995022_-|DUF309-domain-containing-protein
MVWQEFWQAIEQFNQQQFYACHDTLEALWLEAVEPDKNFYQGILQIAVACYHLGNQNWRGAVILLGEGVKRLSNYQPIYEEIDVTSLIEESSQLLQQLQQIEPEQIQEFTQQLNQTNSNYKLPMIITINPS
>NZ_AP017375.1|WP_096383696.1|1994010_1994502_-|OstA-family-protein
MSMSLLFLRSRLSQFLLIARGSLALVAVSYASAFALASTIIVATPTRNLQAQTPTQGGGITIRSDVQEANSETGIFTARGNVQINYPARQIQATSTQAQYYSRERRLVLSGNVYVIQQGNSMRAETMTYLIDEGKFIAAPKNNQQVESTYLVSEPNSATENSN
>NZ_AP017375.1|WP_096383694.1|1993251_1993980_-|LPS-export-ABC-transporter-ATP-binding-protein
MTLILENIHKNYGKRVVVNRVNLRVLPGEIVGLLGPNGAGKTTTFYIATGLIKPNEGKVWLEDQEITALPLHQRARLGIGYLTQQASIFRNLSVKDNIQLVLEQTGVPRPAQPIRLQQLLQEFRLEQVDRVMGSQVSGGERRRTELARALAAGMNGPKFLLLDEPFAGVDPIAVAEIQSIIASLSDRQMGILITDHNVRETLAITNRAYIMRDGQILASGTAEELYANSLVRQYYLGDNFQI
>NZ_AP017375.1|WP_096383693.1|1992043_1993210_-|YjgP/YjgQ-family-permease
MNIGKFKFLAKSHLGLSVMDLYIAKELFLPFLFGMGMFTSLALSIGTLFDLVRKVTESGLLLSIAIQVLLLKLPEFVVLAFPMSMLLAALMAYSRLSSDSELIALRSIGVNIYRLLVPVVIFSFFVVLITFVVHNFVSPAANYQAELTLEKALDKIEPSFKERNIIYPEYKKVELADGTKETVLTRLFYAEEFDGQQMKGLSIVDRTQVGVNQIVTAQSATWNISENTWDFFNGTIYLIAKDGSYRNIVRFQHQQLALPRTPLDITKEGRDYGQMNILQAQEYLKLVKLRGDDKKVRKLEVRIQEKIAFPFVCLVFALIGAAIGTRPQTTSKATSFGICVGLIFAYYLLSFIISSMGVWGVLSPFLAAWLPNILGFLAAGLLINGSSR
>NZ_AP017375.1|WP_096383691.1|1991074_1991962_-|class-D-beta-lactamase
MKKLLSLLLVLILAVVGSWVFENPQVYSRAKQAPEFDSGDAPLQSKPQIEQKIDFQRHFDDLGLNGSIIIYDLHSDRFYQHNPSRNNTAFLPASTYKIPNSLIALETGAIKDDVAVLTWDGIERGLNGSPLKEWNQDLNIRLAYKYSAVWFYQVLARKIGHQRMQDFVNQIQYGNQNIGAEEDIDKFWLGGELRITPKEQIAFLRRLYQNDLPFSQTTIDLVKDIMIAEQTPDYILRAKTGWATSVTPNLGWYVGYLEQNDQVYFFATNIDLNSKTDPAARLEVTRLCLQDLGLL
>NZ_AP017375.1|WP_096383689.1|1990503_1990983_+|GNAT-family-N-acetyltransferase
MQIELYNPSYLDAIIRLSLRAWTPVFDSIQNAMDADVYQAFYPDDWRVSQQKAVEDVCAAEDTNVWVATDAGFTVGFIAVKIHSEDSMGEIYMVAVDPDFQGQGIGTAMIEFTLSWMKEVGMSVAMVETGGDPGHSPARHTYEKAGFRLFPVARYFKKL
>NZ_AP017375.1|WP_096383708.1|2001266_2002451_+|NAD(P)H-quinone-oxidoreductase-subunit-H
MAKIETRTEPMVLNMGPHHPSMHGVLRLIMTLDGEDVIDCEPVIGYLHRGMEKIAENRTTVMYVPYVSRWDYAEGMFNEAITVNAPEKLAGIEVPKRAQYIRVIMLELNRIANHLLWLGPFMADIGAQTPFFYIFREREMIYDLWEAASGYRMVNNNYFRVGGVAVDLPYGWVDKCEDFCDYFDPKVDEYEKLITNNPIFRRRVEGVGTVTREEAINWGLSGPMLRASGVKWDLRKVDHYECYDDFDWEVHWETAGDCFARYLVRIREMRESVKIIRQALKGLPGGPYENLEAKRIAEGRKSKWNDFEYQYIAKKVAPTFKMPTGEHYVRLESGKGELGIFIVGNDNIFPWRWKIRAADFNNLQILPHLLKGVKVADIMPILGSIDIIMGSVDR
>NZ_AP017375.1|WP_096383710.1|2002805_2003144_+|hypothetical-protein
MKTSTFGILATVALTFSPLTAFAQETQVIQQKASNSAIAVGSGNSIRQDVNQNSVQNQFDFDGYANSPASQISIQGASNSAAAIGQNNNITQGVNQNSVQNSGDDYSQYFKY
>NZ_AP017375.1|WP_096383711.1|2003353_2003875_-|Fis-family-transcriptional-regulator
MTSKFDDFESSHKFYLSDWESDNTTPDCFELLSAYLDGEVTPQERQQVQYWLDNDPKIKQIYTKLRQLQCKFESIPIPNNQQVTADLSVNVFQAIDSSQRKRRVLYWGGSAVAALFVAFLSSFSAGENSVGFKIANTVEKQNSDSIMVAVAVNKPAVKIPKASVSSSNLTDEK
>NZ_AP017375.1|WP_096383713.1|2003991_2004648_-|sigma-70-family-RNA-polymerase-sigma-factor
MSQSLPVSWSRVEVTDPKNLVSPEKLSNYDLIVRCQEGSQPDRAAFAELLRRYQSHVDRLLYHLAPDWQERADLAQEVWIRVYRNINRLQEPVKFRGWLSRIATNLFYDELRKRKRMAEPVSLDAPLSISDGEINWELPSDYPSPDDDLTRREFYEQLRRAIADLPEAFRTTIVLREIEGMAYEEIAEITGVSLGTVKSRIARARLKLQSVLQNYLDG
>NZ_AP017375.1|WP_096383715.1|2004726_2005272_-|late-competence-development-ComFB-family-protein
MGIQAIVQQALQDGYLTPSMEAEVGRICDTAAELSVEEYMALDKLMGALLTGEVVAVPRKQFINVMEELVLSQAITRVAEIEQTSEESLDVGDIAAYALNRLPPLYATTEEGANYQRQRAREELQDLINQQVNDAISRYLDRPTFFPERQALAKSNNSDIASQLSSMLKDYAPDYEQKANF
>NZ_AP017375.1|WP_096383717.1|2005432_2006287_-|M23-family-metallopeptidase
MLSSFKPSLTWISTLLLLTIAAPLKALEVQITPDQPELGDTISVIVKTTDSSSQPKVVVEQQEYPVFPLGDRYRALLPTSPLNQAGKLTIQVQGDGETKNLAVWLKNRSFSVQRITLTGKADREATQTELDQVAQFKALVTPQKYWQGAFIKPNAGRISTEFGVRRYYNGVFAQDYYHRGVDYAGATGSLVVAPAAGVIGLVGKEAEGFQVHGNTIGIDHGQSVVSIFLHLKDIYVQPGDVVKAGQPIGTVGTTGASTGPHLHWGLYVHGVSVDPVPWRFGEIN
>NZ_AP017375.1|WP_096383719.1|2006612_2008688_+|GAF-domain-containing-protein
MSISKSVVVQLLKQFPSWRPQMYFKSSLTALSHAMEDRVLASSDSPLIIASFQKERFYRQEAHRYRRIANKTNQVYVLAAPEAEFKHSSHVYETIAFEPTDSLAQEWHLVVVGEDYASCLICREKTNSISDKQTSSAMDNSRRFEGIWTFDRQISLKAADLLLQRILKYRPELGQKIEEGRKLYWATNTTLKQTAKLSPKELKKLENNNPDPFVQRLVSYLQAGHYKLLKANKSLAIKQQKEQLLNSVTDAIRRSLDTEEILQVAVQKLGEGLKVCRCIVYRCSEKDSAAIINHEFISSGIKSVKGQIWQLKDNPLFEEVVELRDSLRIDNTRLDPRINQQAWQQGTGEYLTKLVQSCSISSWLLVPVLYQDRLLGMMELHHCDEVPIVWKEDDVALVDAIATQVGVALIQAESYANLEDLNEQLEALDRTRSNLVAITGHELRTPLSTIQVCLESLASEPDMSPELRQVMLNTALTDAERMRNLIQDFLTLSRLESGRVEWNSEPLSINECIELAISNVRSRLSQAKLPQIVNLTPAELPLVQADGEWLVEVLAKLLDNACKFTNIEGNITIAVKPKLGNKLEVTITDTGRGIEPNRLETVFERFYQEEGALRRSAGGTGLGLAICRQIVKNWGGKIWAESEGRDQGSQFHFTIPVFSEVLGNNQAVTSELNQPTKKTKSQKKHNTQRKN
>NZ_AP017375.1|WP_096383720.1|2008787_2009216_+|Photosystem-I-reaction-center-subunit-II
MAEQLTGKAPQFGGSTGGLLTKAEVEEKYAITWTSPKEQVFEMPTGGAAIMNEGDNILYLARKEQCIAMGAQLRTKFKPRIENYKIYRIYPNGEIQYLHPADGVFPEKVNEGREYNGKIDRKIGDNPNPSTIKFSGKATYEV
>NZ_AP017375.1|WP_096383722.1|2009315_2010845_+|anthranilate-synthase-component-I
MIFPDFTQFSALAEQGNFVPVYQELVADLETPVSAWYKVCAGQPYSFLLESVEGGETLGRYSFLGCDPVWVLEARGEVTTQAYRDGSVNHFSGNPFEILAQCLEPIKPVKLPQLPPGIGGLFGVWGYELIRWIEPRVPVYEPTSEDLPDGVWMQVDNLIIFDQVKRKIWAIAYADLREPNTDLQQAYQEACDRAAKLVLKLQLPLPVEAKSLEWKATDQYTEKPPLTYSSNTSEELFCQNVLKAKEYIRAGDIFQVVLSQRLSTTYTGHPFNLYRSLRVVNPSPYMAYYQFGDWQLIGSSPEVMVKAERSENDKIKATLRPIAGTRKRGINQAQDRALAEDLLQDPKEIAEHVMLVDLGRNDLGRVCIKGSVTVDELMVIERYSHVMHIVSNVIGELEADKTAWDLLKACFPAGTVSGAPKIRAMEIINELEPERRGPYSGVYGYYDFEGQLNSAITIRTMVVRPQSNNRHLVSVQAGAGLVADSVPEQEYQETLNKARGLLEAIRSLN
>NZ_AP017375.1|WP_096383724.1|2010860_2011496_-|L-threonylcarbamoyladenylate-synthase
MLQQIVQKNWKLVPEIKNRLQAGEVLILPTDTVYALVVNGNNHQALTKLRKIKPPASPQPLTIFTRREKADQVVMVNRAAEEMMSHFPYPVTMIMPAKPSVSEIITDGYKSVFIACPDRFIYDLVNELPFPLVGLAASFADTKVTDGNLAQRFFGDKVSLIIDGGQCKYGRSGTLIDFTVEIPTIMTFGTVSVDDLRPLVSQIVLPSHLMK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_AP017375_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP017375_4

2424223-2424325

Orphan

Consensus_repeat	Method
AAGCCCAAAGTCAGTTAGATGAATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP017375_4

>merge|NZ_AP017375|4|2424223-2424325|CRISPRCasFinder
AAGCCCAAAGTCAGTTAGATGAATTACTCGCTGGCACTCGCTCGGAAGAAATTGATACTCAACAGGCAAGAGTTGCTGAAGCCCAAAGTCAATTAGATGAATT

>NZ_AP017375|4|4|2424223-2424325|CRISPRCasFinder
AAGCCCAAAGTCAGTTAGATGAATT	ACTCGCTGGCACTCGCTCGGAAGAAATTGATACTCAACAGGCAAGAGTTGCTG
AAGCCCAAAGTCAATTAGATGAATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP017375.1\|WP_096387923.1\|2414012_2415704_+\|aromatic-amino-acid-lyase	unknown	unknown	gnl\|CDD\|376303
NZ_AP017375.1\|WP_096384111.1\|2415837_2417346_+\|long-chain-fatty-acid--CoA-ligase	unknown	unknown	gnl\|CDD\|341259
NZ_AP017375.1\|WP_096387925.1\|2424636_2425338_-\|urea-ABC-transporter-ATP-binding-subunit-UrtE	unknown	unknown	gnl\|CDD\|274567
NZ_AP017375.1\|WP_096384119.1\|2427554_2428721_-\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|200272
NZ_AP017375.1\|WP_096384116.1\|2423057_2423807_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017375.1\|WP_096387927.1\|2433809_2435318_+\|haloacid-dehalogenase-like-hydrolase	unknown	unknown	gnl\|CDD\|378932
NZ_AP017375.1\|WP_096384113.1\|2418114_2419764_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|366708
NZ_AP017375.1\|WP_096384115.1\|2421649_2422849_+\|prephenate-dehydrogenase/arogenate-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|183035
NZ_AP017375.1\|WP_096384122.1\|2431092_2431665_+\|DUF924-domain-containing-protein	unknown	unknown	gnl\|CDD\|377592
NZ_AP017375.1\|WP_096384112.1\|2417395_2418085_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017375.1\|WP_096384124.1\|2435375_2436209_+\|2OG-Fe(II)-oxygenase	unknown	unknown	gnl\|CDD\|379309
NZ_AP017375.1\|WP_096384118.1\|2426309_2427479_-\|urea-ABC-transporter-permease-subunit-UrtC	unknown	unknown	gnl\|CDD\|132449
NZ_AP017375.1\|WP_096384121.1\|2430434_2431031_-\|urease-accessory-protein-UreG	unknown	unknown	gnl\|CDD\|349776
NZ_AP017375.1\|WP_096384114.1\|2419705_2421583_+\|chorismate-mutase	unknown	unknown	gnl\|CDD\|240554
NZ_AP017375.1\|WP_096384109.1\|2411050_2411746_-\|phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|223248
NZ_AP017375.1\|WP_096384120.1\|2428897_2430226_-\|urea-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|372603
NZ_AP017375.1\|WP_096384117.1\|2425407_2426160_-\|urea-ABC-transporter-ATP-binding-protein-UrtD	unknown	unknown	gnl\|CDD\|274568
NZ_AP017375.1\|WP_096384110.1\|2412762_2413863_+\|3-deoxy-7-phosphoheptulonate-synthase	unknown	unknown	gnl\|CDD\|237376
NZ_AP017375.1\|WP_096387921.1\|2411830_2412073_+\|membrane-protein-insertion-efficiency-factor-YidD	unknown	unknown	gnl\|CDD\|376620
NZ_AP017375.1\|WP_096384123.1\|2431670_2432771_+\|glucokinase	unknown	unknown	gnl\|CDD\|234716

Protein	Function_ID	Function_description	E-value
NZ_AP017375.1\|WP_096387923.1\|2414012_2415704_+\|aromatic-amino-acid-lyase	gnl\|CDD\|376303	pfam00221, Lyase_aromatic, Aromatic amino acid lyase. This family includes proteins with phenylalanine ammonia-lyase, EC:4.3.1.24, histidine ammonia-lyase, EC:4.3.1.3, and tyrosine aminomutase, EC:5.4.3.6, activities.	0
NZ_AP017375.1\|WP_096384111.1\|2415837_2417346_+\|long-chain-fatty-acid--CoA-ligase	gnl\|CDD\|341259	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD. This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions.	0
NZ_AP017375.1\|WP_096387925.1\|2424636_2425338_-\|urea-ABC-transporter-ATP-binding-subunit-UrtE	gnl\|CDD\|274567	TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	8.38221e-133
NZ_AP017375.1\|WP_096384119.1\|2427554_2428721_-\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|200272	TIGR03409, urea_trans_UrtB, urea ABC transporter, permease protein UrtB. Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	1.75631e-68
NZ_AP017375.1\|WP_096384118.1\|2426309_2427479_-\|urea-ABC-transporter-permease-subunit-UrtC	gnl\|CDD\|132449	TIGR03408, urea_trans_UrtC, urea ABC transporter, permease protein UrtC. Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	3.64106e-153
NZ_AP017375.1\|WP_096387927.1\|2433809_2435318_+\|haloacid-dehalogenase-like-hydrolase	gnl\|CDD\|378932	pfam12710, HAD, haloacid dehalogenase-like hydrolase.	0.00388042
NZ_AP017375.1\|WP_096384113.1\|2418114_2419764_+\|FAD-binding-oxidoreductase	gnl\|CDD\|366708	pfam01565, FAD_binding_4, FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidizes the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan.	1.47615e-24
NZ_AP017375.1\|WP_096384115.1\|2421649_2422849_+\|prephenate-dehydrogenase/arogenate-dehydrogenase-family-protein	gnl\|CDD\|183035	PRK11199, tyrA, bifunctional chorismate mutase/prephenate dehydrogenase; Provisional.	8.27989e-84
NZ_AP017375.1\|WP_096384122.1\|2431092_2431665_+\|DUF924-domain-containing-protein	gnl\|CDD\|377592	pfam06041, DUF924, Bacterial protein of unknown function (DUF924). This family consists of several hypothetical bacterial proteins of unknown function. Structurally, this family resembles TPR-like repeats.	4.28183e-96
NZ_AP017375.1\|WP_096384124.1\|2435375_2436209_+\|2OG-Fe(II)-oxygenase	gnl\|CDD\|379309	pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily. This family contains members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily.	1.24796e-17
NZ_AP017375.1\|WP_096384121.1\|2430434_2431031_-\|urease-accessory-protein-UreG	gnl\|CDD\|349776	cd05540, UreG, urease accessory protein UreG. UreG is one of the four accessory proteins of urease. Urease is an enzyme which catalyzes the decomposition of urea to form ammonia and carbon dioxide. Bacterial urease is a trimer of three subunits which are encoded by genes ureA, ureB, and ureC. Up to four accessory proteins (ureD, ureE, ureF, and ureG) are required for urease catalytical function. UreG may play an important role in nickel incorporation of the urease metallocenter. UreG is a member of the Fer4_NifH superfamily which contains an ATP-binding domain. Proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.	3.65409e-132
NZ_AP017375.1\|WP_096384114.1\|2419705_2421583_+\|chorismate-mutase	gnl\|CDD\|240554	cd13149, MATE_like_2, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.	6.05511e-160
NZ_AP017375.1\|WP_096384109.1\|2411050_2411746_-\|phosphatidate-cytidylyltransferase	gnl\|CDD\|223248	COG0170, SEC59, Dolichol kinase [Lipid metabolism].	1.24749e-26
NZ_AP017375.1\|WP_096384120.1\|2428897_2430226_-\|urea-ABC-transporter-substrate-binding-protein	gnl\|CDD\|372603	pfam13433, Peripla_BP_5, Periplasmic binding protein domain. This domain is found in a variety of bacterial periplasmic binding proteins.	0
NZ_AP017375.1\|WP_096384117.1\|2425407_2426160_-\|urea-ABC-transporter-ATP-binding-protein-UrtD	gnl\|CDD\|274568	TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	1.08701e-150
NZ_AP017375.1\|WP_096384110.1\|2412762_2413863_+\|3-deoxy-7-phosphoheptulonate-synthase	gnl\|CDD\|237376	PRK13396, PRK13396, 3-deoxy-7-phosphoheptulonate synthase; Provisional.	0
NZ_AP017375.1\|WP_096387921.1\|2411830_2412073_+\|membrane-protein-insertion-efficiency-factor-YidD	gnl\|CDD\|376620	pfam01809, Haemolytic, Haemolytic domain. This domain has haemolytic activity. It is found in short (73-103 amino acid) proteins and contains three conserved cysteine residues.	1.77611e-42
NZ_AP017375.1\|WP_096384123.1\|2431670_2432771_+\|glucokinase	gnl\|CDD\|234716	PRK00292, glk, glucokinase; Provisional.	9.51176e-127

>NZ_AP017375.1|WP_096384116.1|2423057_2423807_+|hypothetical-protein
MNKQLIDIEATQLKNEAFNPFAEETIPTQQITQLRASSEKSPSEQLIEALLTYPDQAIKILEANEELINSDLVEQMESVATQMKAKGSTDAANFLKNIASQIKKALAVCEFREANEESLEAYHHLIEVLLTYPNQTSKILATNKKLLDAGLFQVMEQMAMQMSTNGSDKAAVFLQDLANQLQEAGYHQLLPAQPKRNWKLWLGGAVVLLSGLSILLINPFAAKTPPPQESSLNSLALASDNALPVKTIA
>NZ_AP017375.1|WP_096384115.1|2421649_2422849_+|prephenate-dehydrogenase/arogenate-dehydrogenase-family-protein
MIEQHIKEIDTELIRLLGKKIELLQETKNNDVIESNLIPILDRVGVPEFIWKNLVINCQAAAKNRLPTNLQPITKPRKVTIIGGSGMMGSFFAQKLSAAGHQVTILEHNDWDKAEELLTNKDLVLICVPIKYTTEVITKTVKYLSPNTALADLTSIKTPALKTMLEYHPGAVMGLHPMFGKVQSFLSQKVVVCSGRRDEEFQWLLELIKADGGELIYSTAEEHDLMMVAVQAVRQFTTFSLGGFLAEQELDTCRSLDFASPPYRLQLGMISRLLTQSAPMVIDIMLATTESRQAIAQLANTYHRLAQWIDEGRREELIAEFGAIQAYLAPQLDCCLAESNHVIEALSDFLKEKRQSAEFKGRRGEPPFALTGSRRQKLKASRLGSHRVAEVSSVVASDV
>NZ_AP017375.1|WP_096384114.1|2419705_2421583_+|chorismate-mutase
MIFAKIGLLTKSEVCVMKSNPSQAIEQTLTTGSVRSHLIQLSVPMFWGLLTVVALSLTDTYFVAQLGTKELAAMSFIFPIFSTFACLAMGLGNGAGAVIARAIGEGDRDKMKRLITDTLALSVLISVCFTLAGLITIKPLFTALGAEAEILPAIADYMEIWYLGTISLVVPIIANSIIRAAGNSQFPALVMTVATVVNIVLDPLLIFGWAGFPRLEVQGAALATVISQIIGLIAVFWFLYYREKVIIFNPPKIQEVAESWQEVLHIGIPAAVTNAISPIAIAIITSMIAAYGAEAVAGFGIASRIESLVFIAFIALSASVTPLVGQNWGAGKLKRVNQSFYWSAIFCLIWGGLAALILGLSSSHLASVFNQNPEVISIATTYLIIVPVSYAAAGVVQMSGSTFNALGKPLPSVVMNLVQMFVLYLPLAYAGSRLLGVNEIFIGISLSNLAIGLGAYCWNQKALKNLAHQFVQSTNQLFNYYIDMNQLTFLQHRPAYRPQTVSWRVRGLRGATTVTENSSRAIAEAVRELFDVLERKNQLDPELIVSVVFSVTKDLNAIFPASVVRHRPGWDLVPLLDVQQMDVPDSLPRCIRVLIQFNTPLPQTALQPVYLRDAALLRPDLAIAH
>NZ_AP017375.1|WP_096384113.1|2418114_2419764_+|FAD-binding-oxidoreductase
MENLVDALQAFRDVLGTQNVLSDEATVSAAETGTYFTTEKVLAVIKPGDRNEVQACVKIANQYQVAIYPISTGKNWGYGSRVPTQDSSVIMDLGRLNRIVDYNEKLAYVTIEPGVTQRQLFDFLQQQNSNLYLSVTGSTPDSSLIGNILERGVAKGPLGDRFSHVCALEVVLPTGECIHTGLSRFGNAKAAKVNRWGVGPYFDGIFTQSNLGIVTELTMWLIPYPRYFQSFFYAINDDSRLEALVDTLRELKLQGLLKNSFVIFNDHRMLSTRQQYPWQETNGKTPLPTELMAKLRQQWGGGAWVGEGALYSVSREQGRIERKLIQKALKNKVDKLIFFDHSKARITELIQPLAKKLLKIDLNETLDVLFRKNPQRGVPTEKTMPMVYWRKQSPVPSHAQMNPDLDGCGVIWLAPSLPFDGQHTRKALNIIKQIAKQYQFEPNVGLQCVTERSIDLTVTIMYDRELPGEDQRALGCHDEMFQKLALEGYIPYRLSTRGMKLLPSAQDDYSQLLQQIKEALDPNNILAPGRYDFRQDWSVNEVRSMCYEK
>NZ_AP017375.1|WP_096384112.1|2417395_2418085_+|hypothetical-protein
MSLTLINQDRATKRACIQFKIAQSDPEIFQCQSLISEVYYQKMGITFSPSYFDIEAKIELYPHHYLMGLIDGEIAATMGLYLHSTNPERYGKVTEQDINKLLDEIGIANQYSGKNIRELSKFVVKDKWRNQGIGKLLMGVAHCQDFIHLNEEQPHLLVSCANRSIFNYFSDCLGIHTHIIKPVPLYKIHEFYRSGNEPMESRLTIPELDIPSHWYHLKLPIELAIGESI
>NZ_AP017375.1|WP_096384111.1|2415837_2417346_+|long-chain-fatty-acid--CoA-ligase
MNITYHIERASKLFPDKTALIFEEKSYTYQELDRLANRMANGLTKLGVTKGDRVALFLPNIPEFIISYLGTLKLGAIAVSLNVMLKSSEVSFILNDCTAKVLVTTEELREQVIKPDIPQLQTILLAEQQIGRGISLDWIIANASPEAEAIDLNKKDPAAIVYTSGTTGFPKGATLSHGNIVSNMAAQNHCCNMTSGDRLLLYLPLFHCFGQNAVLNAGLNVGATIVLQRRFNPEQVLDAILTEKITMFFGVPTVFITLLNLNPSILANVRYFFSAAAPMPVEIAQKWQEQYGIVIHEGYGLTETSPCACYNHNSNYKFGSIGTPIDNVAMKIVDTEGKELPPGEIGEIAIKGSNVMLGYWNRPLETAKVLKNGWFHSGDIGSMDEDGYFYIVDRLKDMINVSGFKVYPAEVENVLYQHPAVAEAAVYGLPDPFKGETVNANIVLKDGYTITETEIAAFCAEKIATYKVPKCFKFVDAIPKNATGKVLKRLLSQNQAVFSQTA
>NZ_AP017375.1|WP_096387923.1|2414012_2415704_+|aromatic-amino-acid-lyase
MASRNQTQPQTFTDKFPHSSSGSVVIVGEKPLTITEVAQVARYGAKALLTTKEEVLQKVNSSCEWVAEAVASGEPIYGVTSGFGGMANVVITPDLAKELQNNLMRYHKVGAGQKLSLADVRAGMLLRANSHLHGASGIRLELIQRIETFLNAGVTPHVREFGSIGASGDLTPLAYITGALVGLNDYYTVDFNGEEMTAPEALKLLGLEPLELLPKEGLAMMNGTAVMTGIAANCVYDAQNLLALSLGAHALALQGLNATNQSFHPFIHQCKPHPGQIWSAQQMLNLIEGSALIRDELDGSHDYRGEQPIQDRYSLRCLPQYTGPIADGISEIAKQIEIEINSVTDNPLIDVAGNASYHGGNFLGQYIGTGMDNLRYYMGLLAKHLDVQIAMLTMPEFNNGLPASLVGNSDRPVNMGLKGLQITGNSIMPLLTFYGNSLTDRFPTHAEQFNQNINSQGFGSANLTRRSIEIFQQYMAIALMFGVQSVDLRAKKIANHYDASQCLSPASCQLYLAIKEVVGKTPSEERPYIWNDNEQALDEHISLIAADLTAGGRIVQAISSVIN
>NZ_AP017375.1|WP_096384110.1|2412762_2413863_+|3-deoxy-7-phosphoheptulonate-synthase
MIIVMKPGTSLKEIDRINQELARPNLKTETSLGKHKVVIGLVGDTNHLNTEQIQAISPCIETVLEIKKPFKRASLEFRHGEYSEVIVSTPNGEVVFGKNAPLVNVAGPCSVESEQMIVDTAFQLKAAGAQFLRGGAYKPRTSPYDFQGHAELALEWLATARQETGLGVITEVMDAAELDVIAEVADVIQVGARNMQNFSLLKKVGAKGKPVLLKRGMSATIQEWLMAAEYILTAGNPNVILCERGIRTFDKQYTRNTFDISVIPVLRELTHLPIMLDPSHATGKSQYVASMALAAIAAGTDSLMIEVHPNPAKALSDGSQSLTPEQFYLLTEEMKVMAMAVGRPWKPACESMFCSLTPYKQFAAIA
>NZ_AP017375.1|WP_096387921.1|2411830_2412073_+|membrane-protein-insertion-efficiency-factor-YidD
MLKTALLWLIKIYRSLISPLFPPSCRFQPTCSQYALEAVEKFGVWRGSWLAIKRISRCHPLHPGGYDPVPASERQEQEKL
>NZ_AP017375.1|WP_096384109.1|2411050_2411746_-|phosphatidate-cytidylyltransferase
MNYLGESISSLWYPLIIIFLYLGILVTVAEGLNRFINDDPELTRKVVHIGSGNVILLAWWLNLSRWVIIGAAIIAAIIAIISYVTPILPSINSVGRKSLGTLFYAVSIGILAAVFWQDHPQYTAVGILVMAWGDGMAAIIGQRYGKHTYQLLGITKSWEGSLTMVGFSYLVTSIILLFVQGNCWQTWLISLLVAVGAASLETLSKWGIDNLTVPLSSAMLCFWCIHILTVS
>NZ_AP017375.1|WP_096387925.1|2424636_2425338_-|urea-ABC-transporter-ATP-binding-subunit-UrtE
MLQVKNLNVYYGESHILRDVDLSIPSGQMVCLIGRNGVGKTTLLKTIMGLLKPRTGEIIFNDLPITKLPTDRRARMGIGYVPQGREVIPRVTVKENLLLGIEARPEGRKGNEEIPEEIFDLFPVLKTMLSRMGGDLSGGQQQQLAIARALMGKPRLLVLDEPTEGIQPSIILEIEAAVKRIIEATGISVLLVEQHLHFVRQADRYYAMQKGGIVASGSTDQLSQEVIQRFLAV
>NZ_AP017375.1|WP_096384117.1|2425407_2426160_-|urea-ABC-transporter-ATP-binding-protein-UrtD
MTTSKILEIENLTINFDGFKALNNLNFSMDTGELRVIIGPNGAGKTTFLDVITGKVQPTEGRVLFKGRNLKKTPEYQIACLGIGRKFQTPRVYLNLTVRENLDLVCNHNKSVFSTLFNRPAVTEMRTVAGLLETIGLEAKADLAAALLSHGEKQRLEIGMLVAQSPDLLLVDEPAAGLTDEETENVGALLLSLAESHSIIAIEHDMEFVRQIANNKVTVLHQGSVLCEGTMDQVQNDPRVIEVYLGQPIE
>NZ_AP017375.1|WP_096384118.1|2426309_2427479_-|urea-ABC-transporter-permease-subunit-UrtC
MDVEVKTGFEKRREQRQKKIIEIVTIAVLTIVFGIILPLFIPAFRLRLLGRFISLAIVALGIDLIWGYTGLLSLGHGIFFALGGYALAMHLNLQPQGQLPEFFTLYGVSELPWFWQPFNSFLLTIIALIVIPGIVAGLLGYLVFRNRIKGVYFSILTQAALIVFFNFFNGQQKLINGTNGLKTDTQAIFGVLASSRQAQLAFYEISIICLILVYLLCRWLTSGRFGRLLVAIRDDETRVRFSGYNPTGYKVLVFAISGAIAGIAGALYTVQTGIITPNAMDVAFSIEMVIWVAVGGRGTLIGAIFGVLLVRLAQTFLSERFPEVWLFFQGALFLIVVTVLPTGIIGWWREDGWEKLRNFFGYRRPVVTYPALEEDPEIQREREELTRKQ
>NZ_AP017375.1|WP_096384119.1|2427554_2428721_-|branched-chain-amino-acid-ABC-transporter-permease
MTALIEGLFNGISIGSVLLIAALGLAIVFGLMGVINLAHGELMMLGAYTTFVVQNVFKPLGSPWFDFYIIFAIPVAFLVAALAGLVLEKGVIRFLYGRPLETLLATWGVSLILRQFVRSVSWMLIISLIVFCLLFFGGMTVLSRRSNWERIRNWAIAILIPLSAAIATLTGFLINKTGQIALTRAWFSARNVDVTAPSWLRGGLKILGFQMPYARLFIIGLTILCLLGVYWFLNRSAWGLRIRSVTQNRSMSSCLGIPTAKVDALTFALGSGLAGIAGVAVSLLGSVGPNTGQNYIVDTFMVVVVGGVGNLLGTIVAALGIGILNYLIGSGTLALIFTSTESLKPLVDFFLFFATISMAKVMVFALIIAFLQLKPAGLFPQKGRTAEL
>NZ_AP017375.1|WP_096384120.1|2428897_2430226_-|urea-ABC-transporter-substrate-binding-protein
MSRLGRRKFLIYGSAGIGTSILLKACASGGGDTNTTETPSNTPTNAATPASSGGDTIKVGILHSLSGTMAISETTVVEAEKLAIKEINAAGGLLGKQIEAVTEDGASDWPTFAEKAAKLIDNDQVVTVFGCWTSASRKAVLPVFESKKHMLWYPVQYEGQECSQNIFYTGAAPNQQIEPAVDWLLENKGKEFFLVGSDYVFPRTANTIIKEQLKAKGGTVVGEDYLPLGDTEVTSIITKIKAALPNGGVIFNSLNGDSNVALFKQMQGAGLTADKYPTMSVSIAEEEVRQIGKEYLLGHYAAWNYFQTVDSPTNNKFVEAFKAEYGEDRVTNDPMEAAYIMVYLWKQAVEQAGTTDLEAVRKAAVGQEFDAPEGKVKMFPNHHISKTVRIGQVRDDGLFDIVWSTEGPVDPVPWNQYVPETKGFACDWTDPNKGGKYKVEKT
>NZ_AP017375.1|WP_096384121.1|2430434_2431031_-|urease-accessory-protein-UreG
MNTFRIGIAGPVGSGKTALLDALCKSLREKYHIAVVTNDIYTQEDAQFLVRSQALSSDRIIGVETGGCPHTAIREDASINLIAIEELEHRFTHLDLVFLESGGDNLAATFSPELVDLTIYVIDVAAGDKIPRKGGPGITKSDLLVINKIDLAPMVGASLDVMEQDTKKMRGDKPFVFTNLKTKQGLENVINFITNQKV
>NZ_AP017375.1|WP_096384122.1|2431092_2431665_+|DUF924-domain-containing-protein
MEFEEVLNFWFGKPETEGYGQPRQFWFVKQNDVDQEIKSRFYSIYQLAAKGKLDFWQETPLSCLALIVVLDQFPRNMFRGKPQAFATDTLALKFAQYALSQNYDQQLLPVQRWFIYLPFEHSENFEHQQTAVNLFSTLKDDPNSARTIEYAIRHLEIIERFGRFPHRNQILGRESTPEELEFLSQPGSKF
>NZ_AP017375.1|WP_096384123.1|2431670_2432771_+|glucokinase
MLLLIGDIGGTKTILRLIEVAEQVQSVETIQQTKYRGTKTILRLIEVAEQVQSFETIQQANYPSSSFSDLVPMVKQFLATVESKVPKRACFAIAGPVVNNISTLTNLNWHLDSQRLEQELNLEKVDLINDFAANSYGVLALKDSDLYPLQVGQAREFSPIAVLGAGTGLGEGFLIPQGKFYQVFATEGGHTDFAPRNDLEMQLLQYLQHKLNIEHISVERVVSGQGIVSIYQFLRDSNYAAESPEISAKIFNWEQQKSPKIDPAAIISQGARVSGDRLCQKTMAMFVEAYGAETGNLALKLLPYGGIYLAGGIAAKNIDLMSDGRFLASFKQKGRLSFLLENIPINLVTNVQVGLLGSILYALQFV
>NZ_AP017375.1|WP_096387927.1|2433809_2435318_+|haloacid-dehalogenase-like-hydrolase
MIDQIQKSEAIRLVETASQNTPIIIDFDETLFLRNSTAEYLDSLRPRTLGLLLLKFLYLIEPWNWLPGRFKNSKVQDWFLVIASTIFLPWTWFLWQKKARLLAKRHQNLELLATVSNINSPIIIATIGFNFIINPILNHMPIKYDRVVGCRFWQGFKDRTEGKLLMLKKVLSSEQLKSAMVITDSEDDLPLLQEVAQPCLVIWPSAEYIAPLQNVYLPFLYLEKVKRFGQNYLAKVIIWEDLPLLLLAFSWQANNTIWHGFSIVLFLISFWCIYEIGYYENDLVAEKYEEKPNLSSRYYQYKEIMKTWNPWVWSLIFAVLGDICLSKAEGVTIPFNYELISAQLESFNPLLLHLICWIVFLLATRFCFWSFNYLNKQTRTWLYLLLQSLRYYGFIAVTPTNLIGTSLLSSHILCHSMLYLVYRYGGGNAENWPKQVPRAMLRWFVFMFILSAIAIGARDLSLWLNLQTWAIMVWCVLQDRRQILKFISQIKSVVKDGSNQVT
>NZ_AP017375.1|WP_096384124.1|2435375_2436209_+|2OG-Fe(II)-oxygenase
MNTNHNKVNSNENLIDLDSFTRAIATLRQDSESLQQTYNSGQPYPHLAIDDLFEPAILDRIVAEFPRNQDRDWIVWDSNYELKTTSRGIAGLSPFTQFFCLWLNSSEFIDELKKITGIQDLIPDPLFFGAGLHEMYRDGWLDIHADYTKHPTLPLIRRINLLIYLNRDWDPSWGGEIELWSETDTEKRVGYTPHFNRTVIFPTTSETLHGVPKRLSCPPEQSRKLISIYYWSPAPSLIKAGTPIIWSSEQSWQKKLRKVLRNIATNISGDKGNGFGL

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Crispr_ID: NZ_AP017375_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP017375_5

2431704-2431828

Orphan

Consensus_repeat	Method
AAAACTATCTTGCGTCTGATCGAAGTAGCAGAGCAAGTTCAATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP017375_5

>merge|NZ_AP017375|5|2431704-2431828|CRISPRCasFinder
AAAACTATCTTGCGTCTGATCGAAGTAGCAGAGCAAGTTCAATCTGTTGAAACCATTCAACAAACTAAGTATCGTGGCACCAAAACTATCTTGCGTCTAATCGAAGTAGCAGAGCAAGTTCAATC

>NZ_AP017375|5|5|2431704-2431828|CRISPRCasFinder
AAAACTATCTTGCGTCTGATCGAAGTAGCAGAGCAAGTTCAATC	TGTTGAAACCATTCAACAAACTAAGTATCGTGGCACC
AAAACTATCTTGCGTCTAATCGAAGTAGCAGAGCAAGTTCAATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP017375.1\|WP_096384131.1\|2441433_2441988_-\|phycobiliprotein-lyase	unknown	unknown	gnl\|CDD\|381208
NZ_AP017375.1\|WP_096384127.1\|2437726_2438263_-\|phycobiliprotein-lyase	unknown	unknown	gnl\|CDD\|312763
NZ_AP017375.1\|WP_096384128.1\|2438526_2438718_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|215022
NZ_AP017375.1\|WP_096387925.1\|2424636_2425338_-\|urea-ABC-transporter-ATP-binding-subunit-UrtE	unknown	unknown	gnl\|CDD\|274567
NZ_AP017375.1\|WP_096384119.1\|2427554_2428721_-\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|200272
NZ_AP017375.1\|WP_096384126.1\|2437012_2437639_-\|chorismate-binding-protein	unknown	unknown	gnl\|CDD\|368789
NZ_AP017375.1\|WP_096384116.1\|2423057_2423807_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017375.1\|WP_096387927.1\|2433809_2435318_+\|haloacid-dehalogenase-like-hydrolase	unknown	unknown	gnl\|CDD\|378932
NZ_AP017375.1\|WP_096384118.1\|2426309_2427479_-\|urea-ABC-transporter-permease-subunit-UrtC	unknown	unknown	gnl\|CDD\|132449
NZ_AP017375.1\|WP_096384115.1\|2421649_2422849_+\|prephenate-dehydrogenase/arogenate-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|183035
NZ_AP017375.1\|WP_096384122.1\|2431092_2431665_+\|DUF924-domain-containing-protein	unknown	unknown	gnl\|CDD\|377592
NZ_AP017375.1\|WP_096384129.1\|2438799_2439567_-\|photosystem-I-reaction-center-subunit-XII	unknown	unknown	gnl\|CDD\|366093
NZ_AP017375.1\|WP_096387929.1\|2442050_2443331_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270453
NZ_AP017375.1\|WP_096384121.1\|2430434_2431031_-\|urease-accessory-protein-UreG	unknown	unknown	gnl\|CDD\|349776
NZ_AP017375.1\|WP_096384125.1\|2436649_2436985_-\|CpeR-family-transcriptional-regulator	unknown	unknown	unknown
NZ_AP017375.1\|WP_096384114.1\|2419705_2421583_+\|chorismate-mutase	unknown	unknown	gnl\|CDD\|240554
NZ_AP017375.1\|WP_096384124.1\|2435375_2436209_+\|2OG-Fe(II)-oxygenase	unknown	unknown	gnl\|CDD\|379309
NZ_AP017375.1\|WP_096384120.1\|2428897_2430226_-\|urea-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|372603
NZ_AP017375.1\|WP_096384117.1\|2425407_2426160_-\|urea-ABC-transporter-ATP-binding-protein-UrtD	unknown	unknown	gnl\|CDD\|274568
NZ_AP017375.1\|WP_096384130.1\|2440004_2440880_-\|photosystem-I-reaction-center-subunit-XII	unknown	unknown	gnl\|CDD\|366093

Protein	Function_ID	Function_description	E-value
NZ_AP017375.1\|WP_096384131.1\|2441433_2441988_-\|phycobiliprotein-lyase	gnl\|CDD\|381208	cd19433, lipocalin_CpcS-CpeS, CpcS/CpeS phycobiliprotein lyase family. Phycobilin lyases covalently attach a chromophore to the Cys residue(s) of cyanobacterial phycobiliproteins. They include Synechococcus sp. PCC 7002 phycocyanobilin lyase CpcS which attaches a phycocyanobilin chromophore to C-phycocyanain beta subunit and to allophycocyanin alpha and beta subunits, Synechococcus sp. PCC 7002 phycocyanobilin lyase subunit CpcU which forms a heterodimer with CpcS-I to attach phycocyanobilin to beta-phycocyanin and to allophycocyanin subunits, and Prochlorococcus marinus phycoerythrobilin lyase CpeS which attaches 3Z-phycoerythrobilin to phycoerythrin. This group belongs to the lipocalin/cytosolic fatty-acid binding protein family which have a large beta-barrel ligand-binding cavity. Lipocalins are mainly low molecular weight extracellular proteins that bind principally small hydrophobic ligands, and form covalent or non-covalent complexes with soluble macromolecules, as well as membrane bound-receptors. They participate in processes such as ligand transport, modulation of cell growth and metabolism, regulation of immune response, smell reception, tissue development and animal behavior. Cytosolic fatty-acid binding proteins, also bind hydrophobic ligands in a non-covalent, reversible manner, and have been implicated in intracellular uptake, transport and storage of hydrophobic ligands, regulation of lipid metabolism and sequestration of excess toxic fatty acids, as well as in signaling, gene expression, inflammation, cell growth and proliferation, and cancer development.	1.02747e-45
NZ_AP017375.1\|WP_096384127.1\|2437726_2438263_-\|phycobiliprotein-lyase	gnl\|CDD\|312763	pfam09367, CpeS, CpeS-like protein. This family, that includes CpeS proteins, is functionally uncharacterized.	1.1322e-82
NZ_AP017375.1\|WP_096384128.1\|2438526_2438718_-\|hypothetical-protein	gnl\|CDD\|215022	smart01094, CpcD, CpcD/allophycocyanin linker domain.	1.08709e-15
NZ_AP017375.1\|WP_096387925.1\|2424636_2425338_-\|urea-ABC-transporter-ATP-binding-subunit-UrtE	gnl\|CDD\|274567	TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	8.38221e-133
NZ_AP017375.1\|WP_096384119.1\|2427554_2428721_-\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|200272	TIGR03409, urea_trans_UrtB, urea ABC transporter, permease protein UrtB. Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	1.75631e-68
NZ_AP017375.1\|WP_096384126.1\|2437012_2437639_-\|chorismate-binding-protein	gnl\|CDD\|368789	pfam06206, CpeT, CpeT/CpcT family (DUF1001). This family consists of proteins of proteins belonging to the CpeT/CpcT family. These proteins are around 200 amino acids in length. The proteins contain a conserved motif PYR in the amino terminal half of the protein that may be functionally important. The species distribution of the family is interesting. So far it is restricted to cyanobacteria, cryptomonads and plants. It has been shown that CpcT encodes a bilin lyase responsible for attachment of phycocyanobilin to the beta subunit of phycocyanin.	1.51336e-96
NZ_AP017375.1\|WP_096384118.1\|2426309_2427479_-\|urea-ABC-transporter-permease-subunit-UrtC	gnl\|CDD\|132449	TIGR03408, urea_trans_UrtC, urea ABC transporter, permease protein UrtC. Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	3.64106e-153
NZ_AP017375.1\|WP_096387927.1\|2433809_2435318_+\|haloacid-dehalogenase-like-hydrolase	gnl\|CDD\|378932	pfam12710, HAD, haloacid dehalogenase-like hydrolase.	0.00388042
NZ_AP017375.1\|WP_096384120.1\|2428897_2430226_-\|urea-ABC-transporter-substrate-binding-protein	gnl\|CDD\|372603	pfam13433, Peripla_BP_5, Periplasmic binding protein domain. This domain is found in a variety of bacterial periplasmic binding proteins.	0
NZ_AP017375.1\|WP_096384115.1\|2421649_2422849_+\|prephenate-dehydrogenase/arogenate-dehydrogenase-family-protein	gnl\|CDD\|183035	PRK11199, tyrA, bifunctional chorismate mutase/prephenate dehydrogenase; Provisional.	8.27989e-84
NZ_AP017375.1\|WP_096384122.1\|2431092_2431665_+\|DUF924-domain-containing-protein	gnl\|CDD\|377592	pfam06041, DUF924, Bacterial protein of unknown function (DUF924). This family consists of several hypothetical bacterial proteins of unknown function. Structurally, this family resembles TPR-like repeats.	4.28183e-96
NZ_AP017375.1\|WP_096384129.1\|2438799_2439567_-\|photosystem-I-reaction-center-subunit-XII	gnl\|CDD\|366093	pfam00427, PBS_linker_poly, Phycobilisome Linker polypeptide.	1.97144e-79
NZ_AP017375.1\|WP_096387929.1\|2442050_2443331_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270453	cd14750, PBP2_TMBP, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose; possesses type 2 periplasmic binding fold. This group represents the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 proteins are comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.08354e-138
NZ_AP017375.1\|WP_096384121.1\|2430434_2431031_-\|urease-accessory-protein-UreG	gnl\|CDD\|349776	cd05540, UreG, urease accessory protein UreG. UreG is one of the four accessory proteins of urease. Urease is an enzyme which catalyzes the decomposition of urea to form ammonia and carbon dioxide. Bacterial urease is a trimer of three subunits which are encoded by genes ureA, ureB, and ureC. Up to four accessory proteins (ureD, ureE, ureF, and ureG) are required for urease catalytical function. UreG may play an important role in nickel incorporation of the urease metallocenter. UreG is a member of the Fer4_NifH superfamily which contains an ATP-binding domain. Proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.	3.65409e-132
NZ_AP017375.1\|WP_096384114.1\|2419705_2421583_+\|chorismate-mutase	gnl\|CDD\|240554	cd13149, MATE_like_2, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.	6.05511e-160
NZ_AP017375.1\|WP_096384124.1\|2435375_2436209_+\|2OG-Fe(II)-oxygenase	gnl\|CDD\|379309	pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily. This family contains members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily.	1.24796e-17
NZ_AP017375.1\|WP_096384130.1\|2440004_2440880_-\|photosystem-I-reaction-center-subunit-XII	gnl\|CDD\|366093	pfam00427, PBS_linker_poly, Phycobilisome Linker polypeptide.	2.18437e-73
NZ_AP017375.1\|WP_096384117.1\|2425407_2426160_-\|urea-ABC-transporter-ATP-binding-protein-UrtD	gnl\|CDD\|274568	TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	1.08701e-150

>NZ_AP017375.1|WP_096384122.1|2431092_2431665_+|DUF924-domain-containing-protein
MEFEEVLNFWFGKPETEGYGQPRQFWFVKQNDVDQEIKSRFYSIYQLAAKGKLDFWQETPLSCLALIVVLDQFPRNMFRGKPQAFATDTLALKFAQYALSQNYDQQLLPVQRWFIYLPFEHSENFEHQQTAVNLFSTLKDDPNSARTIEYAIRHLEIIERFGRFPHRNQILGRESTPEELEFLSQPGSKF
>NZ_AP017375.1|WP_096384121.1|2430434_2431031_-|urease-accessory-protein-UreG
MNTFRIGIAGPVGSGKTALLDALCKSLREKYHIAVVTNDIYTQEDAQFLVRSQALSSDRIIGVETGGCPHTAIREDASINLIAIEELEHRFTHLDLVFLESGGDNLAATFSPELVDLTIYVIDVAAGDKIPRKGGPGITKSDLLVINKIDLAPMVGASLDVMEQDTKKMRGDKPFVFTNLKTKQGLENVINFITNQKV
>NZ_AP017375.1|WP_096384120.1|2428897_2430226_-|urea-ABC-transporter-substrate-binding-protein
MSRLGRRKFLIYGSAGIGTSILLKACASGGGDTNTTETPSNTPTNAATPASSGGDTIKVGILHSLSGTMAISETTVVEAEKLAIKEINAAGGLLGKQIEAVTEDGASDWPTFAEKAAKLIDNDQVVTVFGCWTSASRKAVLPVFESKKHMLWYPVQYEGQECSQNIFYTGAAPNQQIEPAVDWLLENKGKEFFLVGSDYVFPRTANTIIKEQLKAKGGTVVGEDYLPLGDTEVTSIITKIKAALPNGGVIFNSLNGDSNVALFKQMQGAGLTADKYPTMSVSIAEEEVRQIGKEYLLGHYAAWNYFQTVDSPTNNKFVEAFKAEYGEDRVTNDPMEAAYIMVYLWKQAVEQAGTTDLEAVRKAAVGQEFDAPEGKVKMFPNHHISKTVRIGQVRDDGLFDIVWSTEGPVDPVPWNQYVPETKGFACDWTDPNKGGKYKVEKT
>NZ_AP017375.1|WP_096384119.1|2427554_2428721_-|branched-chain-amino-acid-ABC-transporter-permease
MTALIEGLFNGISIGSVLLIAALGLAIVFGLMGVINLAHGELMMLGAYTTFVVQNVFKPLGSPWFDFYIIFAIPVAFLVAALAGLVLEKGVIRFLYGRPLETLLATWGVSLILRQFVRSVSWMLIISLIVFCLLFFGGMTVLSRRSNWERIRNWAIAILIPLSAAIATLTGFLINKTGQIALTRAWFSARNVDVTAPSWLRGGLKILGFQMPYARLFIIGLTILCLLGVYWFLNRSAWGLRIRSVTQNRSMSSCLGIPTAKVDALTFALGSGLAGIAGVAVSLLGSVGPNTGQNYIVDTFMVVVVGGVGNLLGTIVAALGIGILNYLIGSGTLALIFTSTESLKPLVDFFLFFATISMAKVMVFALIIAFLQLKPAGLFPQKGRTAEL
>NZ_AP017375.1|WP_096384118.1|2426309_2427479_-|urea-ABC-transporter-permease-subunit-UrtC
MDVEVKTGFEKRREQRQKKIIEIVTIAVLTIVFGIILPLFIPAFRLRLLGRFISLAIVALGIDLIWGYTGLLSLGHGIFFALGGYALAMHLNLQPQGQLPEFFTLYGVSELPWFWQPFNSFLLTIIALIVIPGIVAGLLGYLVFRNRIKGVYFSILTQAALIVFFNFFNGQQKLINGTNGLKTDTQAIFGVLASSRQAQLAFYEISIICLILVYLLCRWLTSGRFGRLLVAIRDDETRVRFSGYNPTGYKVLVFAISGAIAGIAGALYTVQTGIITPNAMDVAFSIEMVIWVAVGGRGTLIGAIFGVLLVRLAQTFLSERFPEVWLFFQGALFLIVVTVLPTGIIGWWREDGWEKLRNFFGYRRPVVTYPALEEDPEIQREREELTRKQ
>NZ_AP017375.1|WP_096384117.1|2425407_2426160_-|urea-ABC-transporter-ATP-binding-protein-UrtD
MTTSKILEIENLTINFDGFKALNNLNFSMDTGELRVIIGPNGAGKTTFLDVITGKVQPTEGRVLFKGRNLKKTPEYQIACLGIGRKFQTPRVYLNLTVRENLDLVCNHNKSVFSTLFNRPAVTEMRTVAGLLETIGLEAKADLAAALLSHGEKQRLEIGMLVAQSPDLLLVDEPAAGLTDEETENVGALLLSLAESHSIIAIEHDMEFVRQIANNKVTVLHQGSVLCEGTMDQVQNDPRVIEVYLGQPIE
>NZ_AP017375.1|WP_096387925.1|2424636_2425338_-|urea-ABC-transporter-ATP-binding-subunit-UrtE
MLQVKNLNVYYGESHILRDVDLSIPSGQMVCLIGRNGVGKTTLLKTIMGLLKPRTGEIIFNDLPITKLPTDRRARMGIGYVPQGREVIPRVTVKENLLLGIEARPEGRKGNEEIPEEIFDLFPVLKTMLSRMGGDLSGGQQQQLAIARALMGKPRLLVLDEPTEGIQPSIILEIEAAVKRIIEATGISVLLVEQHLHFVRQADRYYAMQKGGIVASGSTDQLSQEVIQRFLAV
>NZ_AP017375.1|WP_096384116.1|2423057_2423807_+|hypothetical-protein
MNKQLIDIEATQLKNEAFNPFAEETIPTQQITQLRASSEKSPSEQLIEALLTYPDQAIKILEANEELINSDLVEQMESVATQMKAKGSTDAANFLKNIASQIKKALAVCEFREANEESLEAYHHLIEVLLTYPNQTSKILATNKKLLDAGLFQVMEQMAMQMSTNGSDKAAVFLQDLANQLQEAGYHQLLPAQPKRNWKLWLGGAVVLLSGLSILLINPFAAKTPPPQESSLNSLALASDNALPVKTIA
>NZ_AP017375.1|WP_096384115.1|2421649_2422849_+|prephenate-dehydrogenase/arogenate-dehydrogenase-family-protein
MIEQHIKEIDTELIRLLGKKIELLQETKNNDVIESNLIPILDRVGVPEFIWKNLVINCQAAAKNRLPTNLQPITKPRKVTIIGGSGMMGSFFAQKLSAAGHQVTILEHNDWDKAEELLTNKDLVLICVPIKYTTEVITKTVKYLSPNTALADLTSIKTPALKTMLEYHPGAVMGLHPMFGKVQSFLSQKVVVCSGRRDEEFQWLLELIKADGGELIYSTAEEHDLMMVAVQAVRQFTTFSLGGFLAEQELDTCRSLDFASPPYRLQLGMISRLLTQSAPMVIDIMLATTESRQAIAQLANTYHRLAQWIDEGRREELIAEFGAIQAYLAPQLDCCLAESNHVIEALSDFLKEKRQSAEFKGRRGEPPFALTGSRRQKLKASRLGSHRVAEVSSVVASDV
>NZ_AP017375.1|WP_096384114.1|2419705_2421583_+|chorismate-mutase
MIFAKIGLLTKSEVCVMKSNPSQAIEQTLTTGSVRSHLIQLSVPMFWGLLTVVALSLTDTYFVAQLGTKELAAMSFIFPIFSTFACLAMGLGNGAGAVIARAIGEGDRDKMKRLITDTLALSVLISVCFTLAGLITIKPLFTALGAEAEILPAIADYMEIWYLGTISLVVPIIANSIIRAAGNSQFPALVMTVATVVNIVLDPLLIFGWAGFPRLEVQGAALATVISQIIGLIAVFWFLYYREKVIIFNPPKIQEVAESWQEVLHIGIPAAVTNAISPIAIAIITSMIAAYGAEAVAGFGIASRIESLVFIAFIALSASVTPLVGQNWGAGKLKRVNQSFYWSAIFCLIWGGLAALILGLSSSHLASVFNQNPEVISIATTYLIIVPVSYAAAGVVQMSGSTFNALGKPLPSVVMNLVQMFVLYLPLAYAGSRLLGVNEIFIGISLSNLAIGLGAYCWNQKALKNLAHQFVQSTNQLFNYYIDMNQLTFLQHRPAYRPQTVSWRVRGLRGATTVTENSSRAIAEAVRELFDVLERKNQLDPELIVSVVFSVTKDLNAIFPASVVRHRPGWDLVPLLDVQQMDVPDSLPRCIRVLIQFNTPLPQTALQPVYLRDAALLRPDLAIAH
>NZ_AP017375.1|WP_096387927.1|2433809_2435318_+|haloacid-dehalogenase-like-hydrolase
MIDQIQKSEAIRLVETASQNTPIIIDFDETLFLRNSTAEYLDSLRPRTLGLLLLKFLYLIEPWNWLPGRFKNSKVQDWFLVIASTIFLPWTWFLWQKKARLLAKRHQNLELLATVSNINSPIIIATIGFNFIINPILNHMPIKYDRVVGCRFWQGFKDRTEGKLLMLKKVLSSEQLKSAMVITDSEDDLPLLQEVAQPCLVIWPSAEYIAPLQNVYLPFLYLEKVKRFGQNYLAKVIIWEDLPLLLLAFSWQANNTIWHGFSIVLFLISFWCIYEIGYYENDLVAEKYEEKPNLSSRYYQYKEIMKTWNPWVWSLIFAVLGDICLSKAEGVTIPFNYELISAQLESFNPLLLHLICWIVFLLATRFCFWSFNYLNKQTRTWLYLLLQSLRYYGFIAVTPTNLIGTSLLSSHILCHSMLYLVYRYGGGNAENWPKQVPRAMLRWFVFMFILSAIAIGARDLSLWLNLQTWAIMVWCVLQDRRQILKFISQIKSVVKDGSNQVT
>NZ_AP017375.1|WP_096384124.1|2435375_2436209_+|2OG-Fe(II)-oxygenase
MNTNHNKVNSNENLIDLDSFTRAIATLRQDSESLQQTYNSGQPYPHLAIDDLFEPAILDRIVAEFPRNQDRDWIVWDSNYELKTTSRGIAGLSPFTQFFCLWLNSSEFIDELKKITGIQDLIPDPLFFGAGLHEMYRDGWLDIHADYTKHPTLPLIRRINLLIYLNRDWDPSWGGEIELWSETDTEKRVGYTPHFNRTVIFPTTSETLHGVPKRLSCPPEQSRKLISIYYWSPAPSLIKAGTPIIWSSEQSWQKKLRKVLRNIATNISGDKGNGFGL
>NZ_AP017375.1|WP_096384125.1|2436649_2436985_-|CpeR-family-transcriptional-regulator
MIISELKESMLPPVAQKKMQAWIRSRHLICSGHFFIFETLEYSTVERFEECVKSLGGTLISVEPTKKVWIGNHRQVILYQAKASLHTPHHALKQYWIKYGGFYTRFDERPC
>NZ_AP017375.1|WP_096384126.1|2437012_2437639_-|chorismate-binding-protein
MLPIIDNSQSKETNLLIDLAKLMAGDFSNHQQAFADSKTYAHIRIFFRPLPYQFFSGIGFYSEQTYDYDLWSPYRQGVHRLIARGNEIYIENYSLQDAYLYAGAGHNRDILLTIKPDSLERRYHCSMVFKKDGDLFRGSVEPGNKCLINRNGIETYLVSEVELTETTWISWDRGMDLVTHQQIWGSAAGPLKFEKRASFAHELPLLTR
>NZ_AP017375.1|WP_096384127.1|2437726_2438263_-|phycobiliprotein-lyase
MNITKFVELSFGRWRSQRSAHHLAFSYFEQVISTIDIEPLEIDDPQVISLCESYKIAPQLASVPFKMSWEGESDWDENEVVKGSTILVPIPDPQERNKGKLLREQGYAETIPAVGNYHFSNDGTFVLLTDYERATAEEKIWFVTPNLRCRVSLIKTSDGNGATTASFSSEIRSLSTNS
>NZ_AP017375.1|WP_096384128.1|2438526_2438718_-|hypothetical-protein
MMNNFSNTDRRFRITVATPGMSGNLRQSSLTYEVSFANLSQTIQNIHRLGGKIVSITEMALEM
>NZ_AP017375.1|WP_096384129.1|2438799_2439567_-|photosystem-I-reaction-center-subunit-XII
MATVLDAPVELWATTSREDKQAVIRAVYKQVLGNPHIMESERLTSAESQLCNGSITVRDFVRAVAKSNFYRTRYFESCAPYRFVELNFKHLLGRAPVDQAELSEHIRTCIEQGYDAEIDSYIDSDEYLAKFGENIVPYPTGAKTETGKKQINYNRTLSLLRGFASVDSATKASRLVDSVATNSTTKINLPSSGKRLAGYKDATEKTFKIVVKGSKFDSPRRISTTEYLVPGDRMSPQIQRIHRAGGKIVSITEIG
>NZ_AP017375.1|WP_096384130.1|2440004_2440880_-|photosystem-I-reaction-center-subunit-XII
MAFGPASELGVALFEDTSPFEYVPGLSEEERESIIKAVYRQILGNAYVMESERATVPESQFKLGQFSVREFVRAVAKSDLYRSRFFETCPRYRFIELNFKHFLGRSPEGLEEMRKHSEILDTQGFDAEIDSYLDSDEYQNAYGENLVPYYRGYKTQPGQSMVEFTHMFALLRGASSSDFKGSLSGKKPVLNKYAIQNIPLPIIPPSGGAAGDGWSFQDTGLGARTRQGVGAGANGKVYRIEVTGYSSPGAVNRVSKFRRSNKVYFVPYEQLSEEYQRIHRTGGKIASITPI
>NZ_AP017375.1|WP_096384131.1|2441433_2441988_-|phycobiliprotein-lyase
MNTSVFEQFFAHCVGNWQSERTYHYLTHQEIERSRTEFEIKPLTTVQKEKVLADNEYQKINDLDSLPGFNLGFYTISDKGEEVSQNLNLMFVPKAENGSWLEGDYLRDRAYEEARPIISYFQFNSQTKELLMTTNYTRVVSVDSITLTNPDLRIRKILNYLRPSEGQPLEKVLLVGFGVEQKVI
>NZ_AP017375.1|WP_096387929.1|2442050_2443331_-|ABC-transporter-substrate-binding-protein
MLKVKKQLKFFNYFLILCCSVIVLSLIILPALTQQPTTVTVLIQALEAAQWQTLVTEFNQTHPRIRLQIIEGPNATNQVEDLYTSSFLLGQSPYDLVYMDIVWVPKFAAAGWLFPLSDRLDATELKEFLSGDVNGGTFQGQLYRMPFRSDAGMLYYRQDLLTANNYQPPRTFEELMAISQDLQEKGVSQWGYLWQGKQYEGLSAMFVEILQGFGGFWIKPDTLEVGLDRPEAIRGVEFLRSTVAKKISPAGVTTYAEEESRRLFQEGKAVFLRNWPYVVGLASAEDSPIQGKFAIKPMVHAPGYPSGACQGGWGLGIAANTQHPEAAWEVIKFFSSEESQRKFVLATGYVPSRKALFNDPEIVAKYPHYPELLTVVESSGLRPPIAQYAQASDILQRYLSAALTNKMNPTEAMQAAAKETRRLLTN

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Crispr_ID: NZ_AP017375_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP017375_6

2942802-2943281

TypeI

Consensus_repeat	Method
ATTGCGATCGTCCTTCGGGGCGATCGAGGATTGAAACT	PILER-CR
ATTGCGATCGTCCTTCGGGGCGATCGAGGATTGAAAC	CRISPRCasFinder
ATTGCGATCGTCCTTCGGGGCGATCGAGGATT	CRT

6 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NZ_AP017375_6

>merge|NZ_AP017375|6|2942802-2943281|PILER-CR,CRISPRCasFinder,CRT
ATTGCGATCGTCCTTCGGGGCGATCGAGGATTGAAACTGCCAAGGAACAAATAGCCATTTTCCGCCACCAGATTGCGATCGTCCTTCGGGGCGATCGAGGATTGAAACAAGGTTTGCATACAAAAAAGCAGAAACAAGAGTTTCTGATTGCGATCGTCCTTCGGGGCGATCGAGGATTGAAACTTTCGCTCCAATGCTCCAAGCAGCTTCGGTAGTATATTGCGATCGTCCTTCGGGGCGATCGAGGATTGAAACTACTTCTTTTGCTCGTGATTTTTCTCTTTCTTTTATTGCGATCGTCCTTCGGGGCGATCGAGGATTGAAACTGAAAGTTCTACTTATCTTTATACTTATGAGGCTGATTGCGATCGTCCTTCGGGGCAAGAGTTCGCTTTGCGGACGAGGATTGAAACTCTCAAGGTAAGAAACTTCTAGCATTCGATGAGCAATTGCGATCGCTCTTTAGGCGAGAGGTTTGCT

>NZ_AP017375|6|1|2942802-2943128|PILER-CR
ATTGCGATCGTCCTTCGGGGCGATCGAGGATTGAAACT	GCCAAGGAACAAATAGCCATTTTCCGCCACCAG
ATTGCGATCGTCCTTCGGGGCGATCGAGGATTGAAACA	AGGTTTGCATACAAAAAAGCAGAAACAAGAGTTTCTG
ATTGCGATCGTCCTTCGGGGCGATCGAGGATTGAAACT	TTCGCTCCAATGCTCCAAGCAGCTTCGGTAGTAT
ATTGCGATCGTCCTTCGGGGCGATCGAGGATTGAAACT	ACTTCTTTTGCTCGTGATTTTTCTCTTTCTTTT
ATTGCGATCGTCCTTCGGGGCGATCGAGGATTGAAACT

>NZ_AP017375|6|6|2942802-2943127|CRISPRCasFinder
ATTGCGATCGTCCTTCGGGGCGATCGAGGATTGAAAC	TGCCAAGGAACAAATAGCCATTTTCCGCCACCAG
ATTGCGATCGTCCTTCGGGGCGATCGAGGATTGAAAC	AAGGTTTGCATACAAAAAAGCAGAAACAAGAGTTTCTG
ATTGCGATCGTCCTTCGGGGCGATCGAGGATTGAAAC	TTTCGCTCCAATGCTCCAAGCAGCTTCGGTAGTAT
ATTGCGATCGTCCTTCGGGGCGATCGAGGATTGAAAC	TACTTCTTTTGCTCGTGATTTTTCTCTTTCTTTT
ATTGCGATCGTCCTTCGGGGCGATCGAGGATTGAAAC

>NZ_AP017375|6|1|2942802-2943281|CRT
ATTGCGATCGTCCTTCGGGGCGATCGAGGATT	GAAACTGCCAAGGAACAAATAGCCATTTTCCGCCACCAG
ATTGCGATCGTCCTTCGGGGCGATCGAGGATT	GAAACAAGGTTTGCATACAAAAAAGCAGAAACAAGAGTTTCTG
ATTGCGATCGTCCTTCGGGGCGATCGAGGATT	GAAACTTTCGCTCCAATGCTCCAAGCAGCTTCGGTAGTAT
ATTGCGATCGTCCTTCGGGGCGATCGAGGATT	GAAACTACTTCTTTTGCTCGTGATTTTTCTCTTTCTTTT
ATTGCGATCGTCCTTCGGGGCGATCGAGGATT	GAAACTGAAAGTTCTACTTATCTTTATACTTATGAGGCTG
ATTGCGATCGTCCTTCGGGGCAAGAGTTCGCT	TTGCGGACGAGGATTGAAACTCTCAAGGTAAGAAACTTCTAGCATTCGATGAGCA
ATTGCGATCGCTCTTTAGGCGAGAGGTTTGCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP017375.1\|WP_096384505.1\|2942334_2942625_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_AP017375.1\|WP_096384499.1\|2936627_2937314_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09651_cas5_CAS-I-C	gnl\|CDD\|187534
NZ_AP017375.1\|WP_096384500.1\|2937310_2939038_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|378245
NZ_AP017375.1\|WP_096384514.1\|2955180_2956599_+\|BamA/TamA-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|130065
NZ_AP017375.1\|WP_096384508.1\|2947640_2948144_+\|sterol-desaturase-family-protein	unknown	unknown	gnl\|CDD\|377224
NZ_AP017375.1\|WP_096384511.1\|2952202_2953186_+\|IS4-family-transposase	unknown	unknown	gnl\|CDD\|376573
NZ_AP017375.1\|WP_096384506.1\|2943445_2945722_+\|DUF4131-domain-containing-protein	unknown	unknown	gnl\|CDD\|377126
NZ_AP017375.1\|WP_096384501.1\|2939103_2940240_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NZ_AP017375.1\|WP_096384498.1\|2936055_2936373_+\|hemolytic-enterotoxin	unknown	unknown	unknown
NZ_AP017375.1\|WP_096384513.1\|2954252_2954900_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017375.1\|WP_015194159.1\|2933396_2933609_+\|DUF2555-domain-containing-protein	unknown	unknown	gnl\|CDD\|371217
NZ_AP017375.1\|WP_096384512.1\|2953461_2953983_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017375.1\|WP_096384507.1\|2946091_2946625_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017375.1\|WP_096384509.1\|2949227_2950145_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|275088
NZ_AP017375.1\|WP_096384503.1\|2940673_2941294_+\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NZ_AP017375.1\|WP_096384497.1\|2933741_2935955_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NZ_AP017375.1\|WP_096384504.1\|2941296_2942331_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_AP017375.1\|WP_096384502.1\|2940334_2940631_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017375.1\|WP_096387983.1\|2950212_2950569_+\|rSAM-associated-Gly-rich-repeat-protein	unknown	unknown	gnl\|CDD\|275087
NZ_AP017375.1\|WP_096384510.1\|2950632_2951838_+\|GRRM-system-radical-SAM/SPASM-domain-protein	unknown	unknown	gnl\|CDD\|211984

Protein	Function_ID	Function_description	E-value
NZ_AP017375.1\|WP_096384505.1\|2942334_2942625_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	6.54709e-26
NZ_AP017375.1\|WP_096384499.1\|2936627_2937314_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	8.39148e-86
NZ_AP017375.1\|WP_096384500.1\|2937310_2939038_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	4.42497e-137
NZ_AP017375.1\|WP_096384514.1\|2955180_2956599_+\|BamA/TamA-family-outer-membrane-protein	gnl\|CDD\|130065	TIGR00992, chloroplast_import-associated_channel_homolog, chloroplast envelope protein translocase, IAP75 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the TOC IAP75 protein. [Transport and binding proteins, Amino acids, peptides and amines].	2.48109e-41
NZ_AP017375.1\|WP_096384508.1\|2947640_2948144_+\|sterol-desaturase-family-protein	gnl\|CDD\|377224	pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily. This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases. Beta-carotene hydroxylase is involved in zeaxanthin synthesis by hydroxylating beta-carotene, but the enzyme may be involved in other pathways. This family includes C-5 sterol desaturase and C-4 sterol methyl oxidase. Members of this family are involved in cholesterol biosynthesis and biosynthesis a plant cuticular wax. These enzymes contain two copies of a HXHH motif. Members of this family are integral membrane proteins.	8.51228e-08
NZ_AP017375.1\|WP_096384506.1\|2943445_2945722_+\|DUF4131-domain-containing-protein	gnl\|CDD\|377126	pfam03772, Competence, Competence protein. Members of this family are integral membrane proteins with 6 predicted transmembrane helices. Some members of this family have been shown to be essential for bacterial competence in uptake of extracellular DNA. These proteins may transport DNA across the cell membrane. These proteins contain a highly conserved motif in the amino terminal transmembrane region that has two histidines that may form a metal binding site.	1.66865e-55
NZ_AP017375.1\|WP_096384501.1\|2939103_2940240_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	2.18628e-88
NZ_AP017375.1\|WP_096384511.1\|2952202_2953186_+\|IS4-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	5.29815e-07
NZ_AP017375.1\|WP_015194159.1\|2933396_2933609_+\|DUF2555-domain-containing-protein	gnl\|CDD\|371217	pfam10742, DUF2555, Protein of unknown function (DUF2555). This family is conserved in Cyanobacteria. The function is not known.	1.81149e-29
NZ_AP017375.1\|WP_096384510.1\|2950632_2951838_+\|GRRM-system-radical-SAM/SPASM-domain-protein	gnl\|CDD\|211984	TIGR04261, putative_arylsulfatase_regulatory_protein, radical SAM/SPASM domain protein, GRRM system. Members of this protein family are radical SAM/SPASM domain proteins (see pfam04055 and TIGR04085) related to anaeroboic sulfatase maturating enzymes and the peptide modification enzyme PqqE. Members are found primarily in Cyanobacteria adjacent to a short protein, ~150 residues, in which the last ~60 residues tends to be repetitive and highly glycine-rich (see TIGR04260). The arrangement suggests modifications to the repetitive C-terminal region by this radical SAM domain enzyme, but the purpose of this system on the whole is unknown.	0
NZ_AP017375.1\|WP_096384503.1\|2940673_2941294_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	5.38104e-35
NZ_AP017375.1\|WP_096384509.1\|2949227_2950145_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|275088	TIGR04262, possible_ABC_transporter_solute_binding_protein, extracellular substrate-binding orphan protein, GRRM family. This subfamily belongs to bacterial extracellular solute-binding protein family 3 (pfam00497). In that family, most members are ABC transporter periplasmic substrate-binding proteins. However, members of the present subfamily are orphans in the sense of being adjacent to neither ABC transporter ATP-binding proteins or permease subunits. Instead, most members are encoded next to the two signature proteins of the proposed Glycine-Rich Repeat Modification (GRRM) system, a radical SAM/SPASM protein GrrM (TIGR04261) and the Gly-rich repeat protein itself GrrA (TIGR04260).	2.3012e-108
NZ_AP017375.1\|WP_096384504.1\|2941296_2942331_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NZ_AP017375.1\|WP_096384497.1\|2933741_2935955_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	3.68652e-54
NZ_AP017375.1\|WP_096387983.1\|2950212_2950569_+\|rSAM-associated-Gly-rich-repeat-protein	gnl\|CDD\|275087	TIGR04260, hypothetical_protein, rSAM-associated Gly-rich repeat protein. Members of this protein family average 125 in length, roughly half of which is the repetitive and extremely Gly-rich C-terminal region. Virtually all members occur in the Cyanobacteria, in a neighborhood that includes a radical SAM/SPASM domain, often a marker of peptide modification systems.	1.57384e-21

>NZ_AP017375.1|WP_096384505.1|2942334_2942625_+|CRISPR-associated-endonuclease-Cas2
MDILVTYDVNTETKEGRSRLRKVATVCKNYGQRVQFSVFECRVNEMQYETFQAQLVKIIDKQKDSIRFYRLPSPREKYVQSFGVDDYTDFDQPLIF
>NZ_AP017375.1|WP_096384504.1|2941296_2942331_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MKTILNTLYVQTQGSYLRLDHETLKLEVEKELKFQIPLHHLGGIVAFGNVLLSPFLIHKCAEDGRNLIWLTEYGRYKARLAGSTTGNVLLRRCQHQAVDSPESTLAIARYMVAGKLQNARSIVMRAAREAKDKTDKDILSKTAQIHAESIQNTETASDLDKLRGIEGYAAKAYFGSFTQMIRQNRIAFTFTERTKNPPRDPINALLSFVYTLLTNECISACESIGLDPQMGFLHALRPGKPSLALDLMEELRSPLADRLVLTLINRGQIKPEDFTERPGGAIYLSEDGRKTILAEYQKRKQEEITHPIVGSKIPLGLIPHVQARLLARHLRGDVPSYQPFILRG
>NZ_AP017375.1|WP_096384503.1|2940673_2941294_+|CRISPR-associated-protein-Cas4
MFAADEYVMLSALQHFAFCPRQCALIHIEQAWAENIYTLRGLRVHEKVHQPGDELIEEGIRIERSLTLYSHQLGLKGIADVVEFLPDGTPYPVEYKSGSKKSRLADNIQLCAQALCLEEMLDRPVLKGAIFHHQSRRRRKVLLDDRLRSLTLQTIEQTRSLLALGKLPPPVKDKRCDDCSLIETCMPHAVNYFTESAHQNNPFLIK
>NZ_AP017375.1|WP_096384502.1|2940334_2940631_+|hypothetical-protein
MSINIETDLKEILTKIDNRLDKIDQRFEKLETKIDDRFNKIETKINEIQVSVARLEKKTEGLSKRIESQEFVSRGVLIGLIVAILGGAAKLFGFVGNP
>NZ_AP017375.1|WP_096384501.1|2939103_2940240_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MTHHLNPSYRHDFVLLFDVTDGNPNGDPDGGNMPRTDAETSHGLVTDVAIKRKIRNYIVTYAEYEATAEKKRLKIFVEHRGVLNDQIRRAYVAEGIPVGKSIKEVVKEEKIIPALRELKPYLPTAFTFVDNDDESGEVDATLEYSGELSEDELKDFYGLDEVTELFNQNKALSKFVKDLVKKAGKPDKNRANAEKAQKWMCANFYDVRIFGAVMSTGLNAGQVRGAMQLTFARSLDPVQPQDLAITRVAVTDAKDREKLQTIGRKTMIPYGLYRGYGFYSPYLATQTGVTQEDLSLFWEALLKMWECDRSASRGMMAPRGLYVFSHESKLGNAPAHKLFERVQVQLKEEISVPRQFNDYQVTVDEIDLPAGVHLTKLI
>NZ_AP017375.1|WP_096384500.1|2937310_2939038_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MILTKLYEYANNRMTLPPAMYGVNKIAWLIDLSPDGKFEGFVCLKSKEAKWGTIMTTPHIGRTVAISPKLLADTGEYVLGIPKKTSKPERVKECHEQFKTLIQQCADETQESVVKTIATFLNSSEIEKAKVQIPKDFDPGEVVTFRVGNAIPSNSGENWHKIEEFWAKYTSGETSEDSDNNNPVMPCLITGEVTTVEKRLPFLIKGVIGGQPSGTALVSANSSAFMSYGLQNSLTSPISRDAAEKFAKALNSLIANEQGQSRIYIGSTVYVFWTREETGFNPLAFLDKPDPQAVANLLKSPFTAKQASSLNENQFYGLSLTANNARTVVRDWLDTTVPNVEDNLKLWFQKQKIVDAYGGEHRPLGAYTLAASVYRDAAKEMQPKVPTALIRSALHADRLPDELLLKLVRRNLVEREITYPRAVLTKLIFSSDSNRNPMMTDMEQLNLNPNLEGGDRGAYYCGRLLAVLEATQRTAIGSVNASLTDRYYGAASSTPANAFPSLMRGARSHLAKLRKTMPGACKALEERLEEITVNLPTFPKTLNLQQQGLFSLGYYHQRASDRAAAKANQNKRQLT
>NZ_AP017375.1|WP_096384499.1|2936627_2937314_+|type-I-C-CRISPR-associated-protein-Cas5
MTTNLPLTVKVWSDLACFTRPEFCAERVSYEVITPSAARGVLEAIFWKPEFIWKIREIQVLKPIQHFSIFRNEINNWQSDRSAKDPEYRYFADDDRAQRHTLGLRDVAYIIKADVQLKPHANANPAKYRDQFRRRVKKGQCHHQPYLGTREFSAFFGLPESTDKPIDHVDPYELGLMLLDVDFINDSAGSTIQYFTHDETGGKVIKGKAQPKFFRARLENGVLRVPES
>NZ_AP017375.1|WP_096384498.1|2936055_2936373_+|hemolytic-enterotoxin
MSINIETDLKEILIKLDNRLEKIDQRFEKLETKIDDRFNRVEQRFEKIETKINDIQVSVARLEEKTEGLSKRIESQEFVSRGVLIGLIVAILGAAAKLFGFAGNP
>NZ_AP017375.1|WP_096384497.1|2933741_2935955_+|CRISPR-associated-helicase/endonuclease-Cas3
MAFYAHTPPQDSEDFHLLKKHLSKVANKAKELAAKFNASELAYYAGLWHDLGKYNPEFQKYLEQCDQASKSNSSEPKNRVPHAIYGAKLAAEKFQPIAPLIYGHHGGLPQMQHMKDRLAEIKIETYQQILNNARSESLNLEITPEINQELINLVKDNLGFELLLRILFSCLVDADYLDTETHFDPESAAIRKTNKNREDLKIDRFWQTLEKSQKKLLASAENTKVNQVRSQVYQACVDAAQLEPGIFRLAVPTGGGKTRSGLSFALAHAEKYHLDRVIVAVPYTSIIEQTVEVYRAIFGQDAVLEHHSAVKPDEGNESDARSRQAMARLATQNWDAPLIVTTTVQLFESLFANRTSRCRKLHNIVNSVIILDEVQTLPVFLLEPILSVLKELCNRYHVSVVLCTATQPAFEGNSPYLKGFPFGSVRDIIPKELAKQHFSTLSRVTYQIPDPAWSWQDLVKDLERREASQALIVLNTRKDALAVLDAIDSTEEDSLFHLSTLLCGQHRREILQQIRDRLKNKQPCILVSTQVVEAGVDLDFPLLYRAIAPLDRIVQAAGRCNREGKLDKGEAIVFQPEDGKVPPGEYRKAVDETIHLLKRKSLDWHDPNIFAEYFQSLYQGLETDGKEIQKYRTSLDYPKVAEEFKLIPDDTNPVAIAYDDRAKEVIQRIKKRGLKCGDLKALQPYLVSLRSREFKQTEELREQIAAGIWLWNGNYDSIKGIAIGDQAIVYDPADLIF
>NZ_AP017375.1|WP_015194159.1|2933396_2933609_+|DUF2555-domain-containing-protein
MNSVKLTQQNIAELTAEDVANLASRLEQDDYSNPFEALEDWHLLRAIAFQRQELVEPYFYLLDIETYDEA
>NZ_AP017375.1|WP_096384506.1|2943445_2945722_+|DUF4131-domain-containing-protein
MNRHSWTIFCLAYLVGLLSTGWLTFSDAEVAKESLIKVGIGLGGLTLISAWIIGRYVHVRLRKSFWLEVFIIAILAVIYFQIRVPQPSVNDISNQVQGNKSQIVIVAGKVLTEPRLTSEEKAKLWFKTTEIETETKIKQEVTGKLYVTLPLLQATSLYPGENIKIQGILYKPQSPKNPGAFDFKKYLNYQGSFAGLKGWKIIEEKNQSESIWGWWKIRRRIVRSQLQGLGSPVGQLVSSITLGRKAVDLPEDLGSNFIQVGLAHILAASGFHVALLLGLVLRITHHLSGRSQLIIGLIILLIYLCLTGLQPSVIRATLMGTFVLVALAKNSQIIPLGSLLLAAVIIVLFNPLWIWDLGFQLSFLATFGLIVTAPVLSRYLDWLPPSIATAISIPLAASIWTLPLLSYVFNTVAVYSLIVNILTTPLVTFISLGGMISAGVGLFIPWLGSLLSTISYFPTIFLIEISKFFTNLPGSTIAVGKVSLIILILIYSIIVLIWLNRWWQNYWWLGLILAVMLLVFPIGYHQLNLVQATILAANEEQIIVIQDRGKIILVNSGEPKTTKYTVLPFLITQGINHIDYAIALNDFSDDHGWFEINNKLSIYNFVSNTKPTLETIKKATKLISSPAKITTKNFQIKLLNNQPILLELKTKHQTWLVIDPTKIKDNLALNQYLQKNNRGHNPVIIVYSGKKIEPEWFKELKPQIIIATTNEVKNTTKQQLQSQHTQLYITGQDGAISWQPQSGFQTTLVTETEKNTFL
>NZ_AP017375.1|WP_096384507.1|2946091_2946625_-|hypothetical-protein
MSKFYLVLCVSAIASLPILMPFNNLQAQAPSQPSIEPTEAPELPSQPSIESTEAPELPSAPDNCVYLKEISTGEIEIRKQVKFGNQNTDFAVPAGKNFTYYIPQLLGENNAKYDVKVYFKYSDGSDASVFEKAFPLKRFERVSDQFESPSERQPYQINFNVNSARNNAYRVSVLGCQ
>NZ_AP017375.1|WP_096384508.1|2947640_2948144_+|sterol-desaturase-family-protein
MISDNFKLTVICFILTIIFASFLEYWLHRLMHIFPWFGKVTSHYTHHYNNRGAGVIWEFKNYCTVVLILCLTFLISQSVGIRVVFSGIVYAAFSAYAHQLQHDNPTKCFWMKMPVHYIHHKHNQWHHNFGLGVDWWDVIFGTYKKVEWPTEEELNQTKRGLLQIKWW
>NZ_AP017375.1|WP_096384509.1|2949227_2950145_+|transporter-substrate-binding-domain-containing-protein
MWKKLSLVLVGLVLAIALPRTASAETTMEKVARTGILTVGTRLDLVPYSYVNDQNELVGYSIDAINLIKKRLEEQLGKEITIQVIAEEDFAERIPKLVSRQIDISCDTVFTWERDRFVDFSVSYGISGIRLAVPKDSPLSSPESLAGQRIGVTPNTVVEQTIKVVQPQATLVPVQNLEEGFTALQEGQIDALAGDTVILAGEIARRESDALMLTPTEPYARYGVSCMVAENNSSFLNAIDYALVKMMQGYVNGEPSSVEMVGRWFGQEGIVDLPPELIRAFFQSIIITREQIPLAEESPASSAGQ
>NZ_AP017375.1|WP_096387983.1|2950212_2950569_+|rSAM-associated-Gly-rich-repeat-protein
MKINTRTSLVGFLLAISALNIPAATAASEQTATPVQQTFEERLTKLTAAIRERKSQLPDSALSEPEQRLARGWADGSGRDWVNGRGRGWADGQGGGWVNANPWRNGWVDGGGFYNYRY
>NZ_AP017375.1|WP_096384510.1|2950632_2951838_+|GRRM-system-radical-SAM/SPASM-domain-protein
MTIAKSTPTSESAIFSNEDFAIALSQFGPISLVVIQPTSFCNLNCDYCYLPDRHLKNRLSLNLVEPIFKAIFTSRFLGDYFTVCWHAGEPLAVPISFYEAVFEQIEEAERQFNTRQACLMHSIQTNGILIDSAWCDFFQKHDIHVGISLDGPAFLHDTHRRTRKGLGSHASTMRGIACLQEHKIPFSVICVITADSLDYPDEIFNFFWENGITDVGFNMEETEGVHQSSSLERAGVEERYRAFIERFWELTAQTDGAFKVREFESICSLIYSGDRLDKTDMNAPFAIVSIDHQGNFSTFDPELLSVKTDRYGDFILGNVLKDTFESVCYGEKFQQIYRDIATGVRECRHTCQYFGICGGGAGSNKYWENGTFASSETKACRYRIKAIADIVLEELENVFSG
>NZ_AP017375.1|WP_096384511.1|2952202_2953186_+|IS4-family-transposase
MVLAALLPIPIKYESRRHLQRLLISPKLRLKCLWVPILKKWLKINQSPNKIAYVAIDRTRWQERNLFVASLIQDKRAIPLHWLLLDKKGNSNFQEQKRLLKLVLRLLDGFKIVILGDREFGHISLADWLEKQGCQYVIRTKDNKYIKQKEENYQLLKFLGLKPGKSFYLPSVKLTKQKGFGVVNLAGYWSQKTKKKQKNEGWYLITNLPNLKQAVFAYQHRYGIEAMFKDCKTGGYNLEQCHGNDQRLLALVLLIAIAYTCAIKRGKQIKSMGIQKYICRLKSARRTTRRHSNFWIGLYGGLWIKTYEFCHDLVEQLMRFTPNKLPF
>NZ_AP017375.1|WP_096384512.1|2953461_2953983_-|hypothetical-protein
MKIKQGSMLTLVAVLSLWGTTLSSSLMAQNSSSDASGSNSTMEEIELTRSTVQNERQSIVTEAMELTEEESQEFWPLYEQYRSEVNQINDRLLKIIEDYAASYKSQNLTDEQAQQMLSDYLELEEQKLEIQKNYVEQFSQVLPAKKVTRYFQLENKMDAVVNFGLAGSIPLVQ
>NZ_AP017375.1|WP_096384513.1|2954252_2954900_+|hypothetical-protein
MKIYSWFNIFIALISSLIATAPGIAGLFDRPDFFEQGQEQFEEEIRRLEQQQSIPNASLTVDETAIPWSRVLVKEVGFTVMMPSGAITEEKETIEAPKGELNFDIIATHPSSSRYVVAYSEEVTPERAKNTQEILERSRDYIIDNKAGFTKTADDDIIFEDYPGKQFQLQNPEETIVFRLLLVDRRLYILAVSQKNDAISAKLIDTFFDSFKLIN
>NZ_AP017375.1|WP_096384514.1|2955180_2956599_+|BamA/TamA-family-outer-membrane-protein
MQKFCYRLFLIRILILVLGTACTNLLLAINVRGQSFSNSTSALSKDSSFSTKAVDLLLESYKAVLIKNTQFFFEGTVESEQVLAQEQKKQDQVIPPGELVFDVGENFGFGSIIEPPTALNGLTRKGFILPGSSTFNTLPITINFQQKVGDSQRLLMQAIGVDPQLFGVDISYTLAPKSLPGAFSANFIYQSTLNPAFESEDSDRNVTLPQGGDAWVNGIGGGIEYSQNLAPNLDLAAGVNYQRVSVRSGMFSNEIEPVDELDNSLTVSPTGQDDLLTLNLAALYTNVDNPKYPNRGFKAYLDLNQSIPVGEANILSTLLAASLTQFIPFGSGQNPSSLVLNIQGGTILGDAPPYGAFNLGGGNSVRGYDTGGVSTGKSFIQATAEYRIPLFSFDFFKQPNDVLGSLFFDYGTDLGTADEVIGEPAVVRDKPSDGFGYGLGLQWRSPFGLLRLEGGLNDRGDGTIFFGGGSRF

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Crispr_ID: NZ_AP017375_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP017375_7

3139253-3139508

Unclear

Consensus_repeat	Method
TGTTCACAACGCCTGACGACATCTAATCTGGTTGCCC	CRISPRCasFinder
GTTCACAACGCCTGACGACATCTAATCTGGTTGCCC	CRT
GTTCACAACGCCTGACGACATCTAATCTGGTTGCCCTT	PILER-CR

3 spacers

cas5,cas7,cas8b3,cas6

The CRISPR arrays of NZ_AP017375_7

>merge|NZ_AP017375|7|3139253-3139508|CRISPRCasFinder,CRT,PILER-CR
GTTTCACAATGCCTGACGACATCTAATCTGGTTACAGCAAACTTGGGATAAGCCACCCCTGGGGCAATTTCCGTTCACAACGCCTGACGACATCTAATCTTGTTGCCCTTGCGGATACAATAACTGCGGATAATCTCGTTGATGTTCACAACGCCTGACGACATCTAATCTGGTTGCCCGTCGAGTCCTGTCACTTTCAATTCATACTTAAAACTCTTGTTCACAACGCCTGACGACATCTAATCTGGTTGCCCTG

>NZ_AP017375|7|7|3139253-3139506|CRISPRCasFinder
GTTTCACAATGCCTGACGACATCTAATCTGGTTACAG	CAAACTTGGGATAAGCCACCCCTGGGGCAATTTC
CGTTCACAACGCCTGACGACATCTAATCTTGTTGCCC	TTGCGGATACAATAACTGCGGATAATCTCGTTGA
TGTTCACAACGCCTGACGACATCTAATCTGGTTGCCC	GTCGAGTCCTGTCACTTTCAATTCATACTTAAAACTCT
TGTTCACAACGCCTGACGACATCTAATCTGGTTGCCC

>NZ_AP017375|7|2|3139254-3139506|CRT
TTTCACAATGCCTGACGACATCTAATCTGGTTACAG	CAAACTTGGGATAAGCCACCCCTGGGGCAATTTCC
GTTCACAACGCCTGACGACATCTAATCTTGTTGCCC	TTGCGGATACAATAACTGCGGATAATCTCGTTGAT
GTTCACAACGCCTGACGACATCTAATCTGGTTGCCC	GTCGAGTCCTGTCACTTTCAATTCATACTTAAAACTCTT
GTTCACAACGCCTGACGACATCTAATCTGGTTGCCC

>NZ_AP017375|7|2|3139325-3139508|PILER-CR
GTTCACAACGCCTGACGACATCTAATCTTGTTGCCCTT	GCGGATACAATAACTGCGGATAATCTCGTTGAT
GTTCACAACGCCTGACGACATCTAATCTGGTTGCCCGT	CGAGTCCTGTCACTTTCAATTCATACTTAAAACTCTT
GTTCACAACGCCTGACGACATCTAATCTGGTTGCCCTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP017375.1\|WP_096384658.1\|3123562_3129904_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|350681
NZ_AP017375.1\|WP_096384661.1\|3136064_3138980_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|350769
NZ_AP017375.1\|WP_096384663.1\|3141412_3143110_-\|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1	cas8b3	cd09713_cas8b3_CAS-I-B	gnl\|CDD\|187844
NZ_AP017375.1\|WP_096379418.1\|3135232_3135541_+\|transposase	unknown	unknown	gnl\|CDD\|379129
NZ_AP017375.1\|WP_096384666.1\|3145873_3146647_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224052
NZ_AP017375.1\|WP_096384654.1\|3115492_3116683_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|377533
NZ_AP017375.1\|WP_096384659.1\|3129949_3130315_-\|four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|274132
NZ_AP017375.1\|WP_096384653.1\|3114135_3115503_-\|TniQ-family-protein	unknown	unknown	gnl\|CDD\|377670
NZ_AP017375.1\|WP_096387991.1\|3139768_3140395_-\|type-I-MYXAN-CRISPR-associated-protein-Cas5/Cmx5/DevS	cas5	cd09688_cas5_CAS-I-B	gnl\|CDD\|187819
NZ_AP017375.1\|WP_096384657.1\|3121400_3123521_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|334157
NZ_AP017375.1\|WP_096384668.1\|3148003_3149044_+\|WD40-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|238121
NZ_AP017375.1\|WP_096384667.1\|3146702_3148007_+\|MCE-family-protein	unknown	unknown	gnl\|CDD\|178642
NZ_AP017375.1\|WP_096384662.1\|3140398_3141409_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|187818
NZ_AP017375.1\|WP_096384664.1\|3143121_3143772_-\|type-I-MYXAN-CRISPR-associated-protein-Cas6/Cmx6	cas6	cd09703_cas6_CAS-I:CAS-III	gnl\|CDD\|370559
NZ_AP017375.1\|WP_096384670.1\|3150277_3151657_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_AP017375.1\|WP_096384669.1\|3149052_3149733_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_AP017375.1\|WP_096384655.1\|3116685_3119421_-\|DDE-type-integrase/transposase/recombinase	unknown	unknown	gnl\|CDD\|378037
NZ_AP017375.1\|WP_096384665.1\|3143937_3144960_-\|TniQ-family-protein	unknown	unknown	gnl\|CDD\|377670
NZ_AP017375.1\|WP_096384660.1\|3130329_3135078_-\|class-I-SAM-dependent-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|223934
NZ_AP017375.1\|WP_096384656.1\|3121129_3121333_+\|DUF2997-domain-containing-protein	unknown	unknown	gnl\|CDD\|314207

Protein	Function_ID	Function_description	E-value
NZ_AP017375.1\|WP_096384658.1\|3123562_3129904_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|350681	cd17923, DEXHc_Hrq1-like, DEAH-box helicase domain of Hrq1 and similar proteins. Yeast Hrq1, similar to RecQ4, plays a role in DNA inter-strand crosslink (ICL) repair and in telomere maintenance. Hrq1 lacks the Sld2-like domain found in RecQ4. Hrq1 belongs to the type II DEAD box helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.06847e-56
NZ_AP017375.1\|WP_096384661.1\|3136064_3138980_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|350769	cd18011, DEXDc_RapA, DEXH-box helicase domain of RapA. In bacteria, RapA is an RNA polymerase (RNAP)-associated SWI2/SNF2 (switch/sucrose non-fermentable) protein that mediates RNAP recycling during transcription. The ATPase activity of RapA is stimulated by its interaction with RNAP and inhibited by its N-terminal domain. The conformational changes of RapA and its interaction with RNAP are essential for RNAP recycling. RapA is part of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	5.79257e-59
NZ_AP017375.1\|WP_096384663.1\|3141412_3143110_-\|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1	gnl\|CDD\|187844	cd09713, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-C subtype; also known as Csx13_N family.	3.13996e-98
NZ_AP017375.1\|WP_096379418.1\|3135232_3135541_+\|transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	4.22793e-29
NZ_AP017375.1\|WP_096384666.1\|3145873_3146647_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224052	COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism].	7.52668e-112
NZ_AP017375.1\|WP_096384654.1\|3115492_3116683_-\|AAA-family-ATPase	gnl\|CDD\|377533	pfam05621, TniB, Bacterial TniB protein. This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein which is involved in Tn5053 mercury resistance transposition.	0.000643473
NZ_AP017375.1\|WP_096384659.1\|3129949_3130315_-\|four-helix-bundle-protein	gnl\|CDD\|274132	TIGR02436, S23_ribosomal_protein, four helix bundle protein. This family describes a protein of unknown function whose structure is a bundle of four long alpha helices. Some of the first members of this family were found encoded in the (atypically large) intervening sequence (IVS) of Leptospira 23S RNA, a region often present in the rRNA gene and removed during rRNA processing without re-ligation. However, this location is not conserved, and naming this protein as a 23S RNA protein is both confusing and inaccurate.	4.01238e-28
NZ_AP017375.1\|WP_096384653.1\|3114135_3115503_-\|TniQ-family-protein	gnl\|CDD\|377670	pfam06527, TniQ, TniQ. This family consists of several bacterial TniQ proteins. TniQ along with TniA and B is involved in the transposition of the mercury-resistance transposon Tn5053 which carries the mer operon. It has been suggested that the tni genes are involved in the dissemination of integrons.	5.48979e-14
NZ_AP017375.1\|WP_096387991.1\|3139768_3140395_-\|type-I-MYXAN-CRISPR-associated-protein-Cas5/Cmx5/DevS	gnl\|CDD\|187819	cd09688, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	8.62725e-81
NZ_AP017375.1\|WP_096384657.1\|3121400_3123521_-\|AAA-family-ATPase	gnl\|CDD\|334157	pfam00580, UvrD-helicase, UvrD/REP helicase N-terminal domain. The Rep family helicases are composed of four structural domains. The Rep family function as dimers. REP helicases catalyze ATP dependent unwinding of double stranded DNA to single stranded DNA. Some members have large insertions near to the carboxy-terminus relative to other members of the family.	2.70438e-13
NZ_AP017375.1\|WP_096384668.1\|3148003_3149044_+\|WD40-repeat-domain-containing-protein	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	8.15199e-81
NZ_AP017375.1\|WP_096384667.1\|3146702_3148007_+\|MCE-family-protein	gnl\|CDD\|178642	PLN03094, PLN03094, Substrate binding subunit of ER-derived-lipid transporter; Provisional.	1.99999e-27
NZ_AP017375.1\|WP_096384662.1\|3140398_3141409_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|187818	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Cst2/DevR family.	4.28987e-29
NZ_AP017375.1\|WP_096384664.1\|3143121_3143772_-\|type-I-MYXAN-CRISPR-associated-protein-Cas6/Cmx6	gnl\|CDD\|370559	pfam09559, Cas6, Cas6 Crispr. The Cas6 Crispr family of proteins averaging 140 residues are characterized by having a GhGxxxxxGhG motif, where h indicates a hydrophobic residue, at the C-terminus. The CRISPR-Cas system is possibly a mechanism of defense against invading pathogens and plasmids that functions analogously to the RNA interference (RNAi) systems in eukaryotes.	6.63194e-71
NZ_AP017375.1\|WP_096384670.1\|3150277_3151657_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	4.9492e-45
NZ_AP017375.1\|WP_096384669.1\|3149052_3149733_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	7.83657e-16
NZ_AP017375.1\|WP_096384655.1\|3116685_3119421_-\|DDE-type-integrase/transposase/recombinase	gnl\|CDD\|378037	pfam08722, Tn7_Tnp_TnsA_N, TnsA endonuclease N terminal. The Tn7 transposase is composed of proteins TnsA and TnsB. DNA breakage at the 5' end of the transposon is carried out by TnsA, and breakage and joining at the 3' end is carried out by TnsB. The N terminal domain of TnsA is catalytic.	3.44671e-11
NZ_AP017375.1\|WP_096384665.1\|3143937_3144960_-\|TniQ-family-protein	gnl\|CDD\|377670	pfam06527, TniQ, TniQ. This family consists of several bacterial TniQ proteins. TniQ along with TniA and B is involved in the transposition of the mercury-resistance transposon Tn5053 which carries the mer operon. It has been suggested that the tni genes are involved in the dissemination of integrons.	1.26857e-17
NZ_AP017375.1\|WP_096384660.1\|3130329_3135078_-\|class-I-SAM-dependent-DNA-methyltransferase	gnl\|CDD\|223934	COG1002, COG1002, Type II restriction enzyme, methylase subunits [Defense mechanisms].	3.22795e-13
NZ_AP017375.1\|WP_096384656.1\|3121129_3121333_+\|DUF2997-domain-containing-protein	gnl\|CDD\|314207	pfam11211, DUF2997, Protein of unknown function (DUF2997). This family of proteins has no known function.	9.39515e-10

>NZ_AP017375.1|WP_096384661.1|3136064_3138980_-|DEAD/DEAH-box-helicase
MVNSTVLAPGARVVVRDAEWLVRKTLKASAGSRVVIELVGVSDFIKHETAQFIAELEEDLVVLDPKETKLTVDDSSGYLKSLLFIEANLKQTAPTDSNLYIGHKAAMDVLPFQLDPSLKALEMSRQRLLIADAVGLGKTLEAGILVSEMIRRGKGRRILVVTTKSMLTQFQKEFWSRFTIPLVRLDSVGIQRIRSRIPTNHNPFHYYDRAIVSVDTLKQDRSYRTYIENAYWDIIVIDEAHNVARRGRGQSTSLRAKLAQRLATRSDSLIMLSATPHDGRAESFASLMNMLDPTAIASESDYSKDEIRDLYVRRFKKDVKDQLAKNFPERNAIAIESNASSLEESAFEILDGLKLSSIDTKAKAGMLFKTTLLKAMLSSPMACLETVVKRIRKLEKEERRGNEIDIEELKCLQEVLEKITASKFSKYRQLLSVIGEKDNNGFGWKGTNSKDRIVIFTERLETMRFLKENLSKDLSLKENAIATLDGSMSDVDLMEIIEEFGNEQSPLRLLIATDVASEGINLHYLSHRLIHFDIPWSLMALQQRNGRIDRYGQEEQPQIRYLLTRSNNSRMDEVERIIRVLLDKDEQAVKNIGDPSVFMGVFDVDEEIKITSEAIESGRSAEDFASSLEPKQPEDDEFDFFALFDEPEISQAVNIENNLAEMPSLFEDDFSYVKSALEQLRQEQNLQLNIIEEELSIELTMPQELRQRYDRFPKEILPDKNEPLRLSADKIAIARALDEARRAEDSWSSLQYLWELHPIVTWLNDRGVTLFGRHQAPVITLADKLAPKEVVFIISGVIPNRRGQPLINKWLGVVFEGKKFVRVEEFTTTRDRTNLGKEPIPNTNQPIDESLLELRSQAVDEATKVILAANREYNQSIDPILQQQLDRLEQLKWEHNRQLELKFENTNSLTKSKKEKAQQRIERIFDDYYNWVQESTITEEVPYRTHLRSHEETESRLSINLTKQRSILAVA
>NZ_AP017375.1|WP_096379418.1|3135232_3135541_+|transposase
MKYSSSLSDEEWEILEPLLVKILPTKKQTRPANWTRREILDGILYQLKNGCNWADLPKDLPPYSTVYWHYKQWRKVGVFEKLMNALHEQVRQQVKKNLSGQH
>NZ_AP017375.1|WP_096384660.1|3130329_3135078_-|class-I-SAM-dependent-DNA-methyltransferase
MAILTGINNENEFYSHHYLDAILQQDIKDVVKRWKEREEETGDKSPPKAIASLKTDYFKTCSQIGQEKDIQERLLLQREWFSRFFSVLGYEFKPTEKILDDDEIIPIVAEVNKNNGQPLLWIIEAVSDTEEAVDVLSLSLNQVQFGNDERSPQPNPELLNIDFEDLISDYIFAQNDPPRWVILAGIHQIVLLDRFKWNASRLLRFDLGEILSRLDNDALQAKAILLHREHTCPNEGTALLDELDENSHKHAFSVSDDLKYALRESIELLGNEAVWYKQNKLHEGVYRGKLDEGQLTLECLRYMYRLLFLFYIEARQELGYAPMNSDIYRQGYSLDFLRNLENVDLRTTEDTEGYFIDASIKKLFKLVWEGYPEQDYEQLSFDLKQQEITHDTFELKPLKSHLFDPARLSLLNKVKFRNVVLRRVIELMSLSRASSGKRRGRISYAQLGINQLGAVYEALLCFRGFFAEEDLYEVKKADDKNTDELKVAYFVKLPDLENYTDKERVFNDDGTPKCYPKGTFIYRLAGRDRQNSASYYTPESLTRCLVKYSLKELLKDKTAEDILKLRICEPAMGSAAFLNEAINQLAEAYLELKQKELDRRIKQEDYLQEKQKVKMLLADRNVFGIDLNPVAVELAEVSLWLNSIYQGAHVPWFGMQLHCGNSLIGARRQVYDTSLIPQSNRHKNYWYDNEPQRVLLTEELPAKSIFHFLLPDPGMANYTDKVIKQLAPENIKKIKDWQKELCKEAYEGFEIEQLVSLSKKIDELWQRHVKEQRNMRNRTTDPLAVFGQEEDKLQRSTLTMKDKIVAQERMSEGVGNSSAYRRLKLVMDYWCALWFWRVEKADLLPTRSEYLMELFVILGERPIVPEKQLDIPLFPETLPEAEAKEFIDQYGSVDLKTLCSRYERLQLVEEIAKEKRFFHWELEFADIFADNNGFDFILGNPPWIKVEWQEGDVLGDAEPLFILRKFSASKLGKLREETLTKYFQLQADYFNVYEGCEGTQNFLNAYQNYPLLKGTQTNLFKCFLPQGWSNSNENAVQSFLHPEGVYDDPKGGILRSHIYQRLRNHFQFQNQFILFPIGDRNKYSINIFGRRQEQADFINISNLFAAKTIDACYEHNGTGKVGGIKNDDNEWNLEGHQKRIIRVNEDQLAFFAKLYDKENTPALQARLPAIHSQQLIKVLEKFARQSLYLSDFQKKYFTTQCWNETNAQNDGTTKRNTCFPESTDQLILSGPHFHIGNPLSKTPREICAEKGHYDVLDLNTIPDDYLPRTNYVPACNVNEYQNRIPRVNWIEEEESEPKKVTEYYRFLNREMLSQSGERTLISTILTKDNTYIHTCLGTAFKSNKILLSFYSLALSVPLDFRVKTTGMGHANISLIEQLPVLSSDSKYKYSLHLRALSLTCLTSYYAELWESIYTQEFNRDTWTKQDPRLNNQFFQNLTPNWQRNVALRTDYDRRQALVEIDVLAAMALGLTLDELITIYRVQFPVMRQYEKDTWYDQNGRIVFTSSKGLPGVGFPRTAPRGETGWEDIKDRSSGTVERTIEDNTLPGGAVTRTIVYEAPFDLCDREEDYRIAWAAFEQRGLK
>NZ_AP017375.1|WP_096384659.1|3129949_3130315_-|four-helix-bundle-protein
MSDSNLSIQERAENFAIRVIKAYVELNKRKYDDAGKVLSKQFLHSGTSIGANCSEAVYAQSRNDFIHKYSISLKEANETRYWINLMIKSQIVTESKFTPMLQELEEIIKILTASIKKLKEN
>NZ_AP017375.1|WP_096384658.1|3123562_3129904_-|DEAD/DEAH-box-helicase
MIPSVLATEIQASITDFLKTEFRSSSPGFEDLIDRFLDNPEAIFKGPYLSASLPFRSGTSGIDYFPDVPMAFPPHRHQEQAFGRLQHPDYQSTIVATGTGSGKTECFMMPILDHCFKYRGEPGIKAILIYPMNALATDQAKRLAQLIWHNSNLKGYITAGLFVGESDREPTSVMTETGVITSKDILRQSPPDILLTNYKMLDYLLIRPKDQGLWVGNSPETLRYLVVDEIHTFDGAQGTDLACLIRRLKARLQTPANHLACVGTSATLGGNKDTGNELISYAGKIFNETFNNNAIVTEDRLSAAEFLADAFIDPQPVPSPELLDSLLPQNYDSVEKYIRAQYQLWFDRELTDDWQEMEWRIELGDRLKSLPIVNNLLKILSGEPTSLPSLWAQLSRKMRLPESKGDSPIAPTIYQTALLTSLAALFSLARNINNRPWANIRIQLWLRELRRMVANISDRPELTFADDLTNEEQGRNLPLVHCRECGATGWGGLRRKQSDRQIGCNLKDFYQAFFSKSPLISFIFPAKEDMERRRQEQGERKKLCSNCLSLNISSATYCHTCGSQQLLSVTEPNLIREVNRNGSRWRESSHDCPICGAKNNLAILGSRAASLASAAIGTLFASSYNDDRKLITFSDSVQDAAHRAGFFTARTFRTTLRTALKQYLDRQGNGKNLEQIIPDFKTYWRQELGSDTDYVATFIPSDLEWLGEWEELKQKGTCSANLKELCDRRLDWEIISELSLKTSFGGSLEKTGTCAIGINLEQLDRATAEVLIKLKNELGLHHLGNEKIKQFILGIIYHIRQKGGILHRLLDISIQQDGKFYLLQNQIFMPGIGPASIKPVYPIEARSHEQFEPVIQKITPWWENWAFKNFFDPQEATLIGEQIPVIYQHTFNTLVELGILGDRYTNKNAKVWGINLAALQLDTQTIHLSCSHCRHSIVSSPTELAYWQEMSCLQSQCQGRYQIDNNRQLNFYKNLYSKGNVWHIFAQEHTGLLEREVREELERRFINSQNRSDPNLLSATSTLEMGIDIGDLSSVLLCSVPPQQANYQQRIGRAGRRDGNAFVTTIANGTNHDLYFWSDPLKMIAGGVETPGCYLDASAILQRQLTAYCLDCWIAREGNTLDLPEIFNRVLASVQQGDLNRFPYTWLSFIDREREQLLNGFVRLFAQEIGDRTQQQLEMFISQGERDEGGLRWRILNRLQEVVEERKRLQNQIRTLARRIKEKENGAKSQNHEEELEELKRERKGFMDLVKRINNKNTLNFFTDEGLLPNYAFPEAGVTLKSIIWRRRNTSGNSSTGKYETFTFEYERPSALAIGELVPSGKFYAEGRRVNVDQIDLNLSEIEEWRFCRNCSYAVPNIYQEAKQRTCPRCGDVMWSDEGRKRKMVRLRQVMATTKDRDSRIGDDRDERTPAFFTRQLLADFDPIVREQSYLIDEEEFPFGFEFLSRVTFREINFGQITSQAETVEIAGVARARSGFSVCRSCGKVQNGGDLEEIRFAGRPNHTLACIHKNSDDPRHFMDVLYLFRQFESEAIRMLLPVDTLNSPIQLHSFIAALQLGLKLHFQGGVDHLRTLISEEPSPNSSLRRPFLFLYDTVPGGTGYLKQLLRNRDELISVFEEALTVLRSCSCEDGCYDCVFAYRNNFEQDKTSRRSAIAILNAIVTRKNKITTLESGLSTVKLNALFDSVLEQRFIDALSRYRYQDRPTILRKEVINGKPGYLLSIGEQNWQIEPQVELDQNHGVAIPSRADFVFYPVKESPNIKPIAIFTDGWEYHSDRLSQDFQQRMAIAKSSNFHVWSLTWSDVESQFNSQAGAYVNLLTQELSEKFRSNQNKLYQQSNCEQLRHLKDKDSFIWLIHYLSNPERQLWQRWALLRSFAYIQQEQYQNLSDRHLWEQEVINLIDSKIINSFGLDLSDYLANLSWNSAQSNTLIKSYIAINPKKFNSKDGKSSLMVISLSDRFREIDDEIVKAWTGVLRQYNLFQFLDYSYIVTSSGFEDETELGQFWLPPPTDREKPSNNSDPIWEQIKTLVFEPDAIALIDYMAIHNWQVPEVGYELTDDTDTVIAEAELAWSDRYLALVIDSSETEIFTQNNWTTLTIAEVLNNPEAFYHQHLAN
>NZ_AP017375.1|WP_096384657.1|3121400_3123521_-|AAA-family-ATPase
MLNHNIRMAIATDFLDAFSKLTKQTQAKTNAFISKFKQNPTSSGINYESIQNAADKNLKSVRIDVSYRAIVLKPETGNTYLLLWVDNHDRAYQWAQRRVCKINPESGALQIIDVEEVAAIEREIEAKAKTSAKKRFADIHDRHLLRLGVPEELLAAVRSVITDDDVDKLISKLPEEAADAILLLAAGYSLDDVLNLQDKKSDRQINTEDFDAALETNDSKRRFYIVEDDAELEEMLAAPLEKWRVFLHPTQRRLVEKEWNGAVRVLGGAGTGKTVVAMHRAKWLAEHRFTLSTDRIFFTTYTRNLAIDIENNLRKICSPEIMRRIHVENIDSWVVNFLKQEGIKARIVYENDLEQLWEQAYTLAPEFSLAFYQDEWREVIQPYQVKTLKEYLKAPRVGRGTRLNRAKKAEIWGVFAEFNSLLQEKGWKDRQTALRDACSLLKNKQGETLPFKAVIVDEAQDMGTEAFSLLRAMIPVGPNDLFIVGDPHQRIYQHKVVLSHSGIEIRGRSRRLRLNYRTTDEIRKWASQVLIGSIFDDLDGGQNDLNDYRSLLHGKEPSIKGFTTFNDEIKYITEQLQRIEREEDTLSSSCLILRTKSLIDSYSKALNTLGVTTCQIHRSQADDLTTPGLRVATMHRVKGLQFEYVLLAGLTKDELPPKRILDRLSDNRARLSLIESDRCLLHVAATRAKKEVLVTYHGQPSELLGC
>NZ_AP017375.1|WP_096384656.1|3121129_3121333_+|DUF2997-domain-containing-protein
MELQEIDVFIEKDGQVKIEIRGVKGMSCLDLTKDLEAVLGNQIAAREMTSESQEVEQELQQQQWQWG
>NZ_AP017375.1|WP_096384655.1|3116685_3119421_-|DDE-type-integrase/transposase/recombinase
MLSENDFQHWCDRNKISEEAKQEIQIIRSSEPSRKVGGGKRSVSGRYSSQKMGVTIQFESHKVELPFIYQLEHDEDVLEYYDQPPPFKLSYQSESGKNIGFFYTPDFFVIRTDSAGWWECKTEENLQKLAQKNPNRYFLDDDNHWRCPSAEDYANRFGWDFSIWSSASVNWTMQRNLEFLEDYYRLRGRKKLNESSFIAIISIIKAKPGITLLELFHVSENIEADDIYHLIAQETIYLDLSVAPLVEPEKCLLFCDRVTALSYSAITASQATNNTVISPIIDLNVGNIVIYNGKALTIALIGEDNILLQTAENQSIEFPQDTFENLIRQGKITSFQKTKTNEIDPQALELLQQASEKDLKDANYRYHSIQPYLNGEPIRRDTPQERSLRNWLSAYNKARHQYGYGYLGLLSFEHQKGNRNRRLPQNILDKIDDFIENHYETKKQPTKQSTYAAFANFCAQAGIPDCQIPTYKTFIKEIKKHSGYEQTLKRAGSRAAYELEQFYWELNLTTPRHGDFPFHICHIDHTQSDIELRCSKTGKSLGRPWITFLVDAFSRSILAVYITYDPPSYRSCMMVLRICVQRHGRLPQTIITDNGKEFHSTYFETLLAMFECTLKHRPAAKSRFSGVCERLFGTTNQQLLYNLAGNTQITKKVRLATKSVNPKNLSLWNIGLLYLYLCEWAYEVYETTEHPALDGYSPREAFINGVKQFGNRDLRRIAYDNNFKILTLPTTSQGKAKVRPGKGVKIEYKDYWHNALRDPEIENNWVDVRYDPFNAGIAYVYVRGQWVECISEYYPLFRGRSEKEIRLATAELKKRHQNHHGNYKIRAKQLGNFLAKTETEEILLEQRLRDEQTHEVFRVIEGGTPNVLPFTSPTITVEETVNTRSKPNMPVEEKSSSDAIEPPKFKRFKKY
>NZ_AP017375.1|WP_096384654.1|3115492_3116683_-|AAA-family-ATPase
MSSEREFPLELLKANKEHRLNYYDEYTMAHPFLDRAFEDLKPLVRHCGETRLIFIVGPTGVGKTKLRQLTEKWILEKLWESIRSNMGHLAVASVEAVLQKSGLFNAKDHLKRCLYALHEPEEFIKNKINYGVDGIYRTDEGKLAIKSRILETDLGWALEQALKHRHPQIFFIDEAHHMLAVASGRKLTEVPEAIKSLANRTEVLHGLIGTYDLLTLHDIGDQLSRRSLYIHLPRYDAKFIEDREDWQSIVWNFQTQIPIEEEPDFVSDWEYLYERSLGCVGILKNWTRNAFADAMEDEAKTVTLKHLERRALSIGQCRNILKKIKEGENNYAAIEGEVEKLRTELELGIEPISRTQPISQSYSGANQTASQKPKSKQAVGQRRAKRDRVGIDKDAG
>NZ_AP017375.1|WP_096384653.1|3114135_3115503_-|TniQ-family-protein
MQDKIFKKYRSLKLQCTPERSSKLYSITPIGIGNSLIESLTSYISRLALAHCVYPGILMERVVSSVIDKKYSSADIHKLYSFTDAINGTGVMGLDIVNALEKLTFQNRLSLLTLTNLSELIPSRKLLHDYKLWCPQCYRNCHTRSEEIYEPLIWKLKTVAVCSIHNLPLQEFCPYCLKKNYHLAWKTRPGYCSQCGQWLGELKAYDQSLLAKEKDETLNWHLWVSKNLEELLIKNSSRDVTWSKNTISQSLMRYAQQNAEGNIAALARQLEMPKNTVWLWCKGKNQPTLEMLLRICYGLKVSVWNFLTQENLIESEKVHLIASPPELKSKAKSKVLELDKIKEYLEQVIKKETIPPPSMEQVARDLQFQRRTISRHFPELCRVISANYTKHRKATHRQAIESSCQEVREAVKQLHSEGKYPSHNKVEKLISRPGLLRYEEVKKAFTKAKQELNFK
>NZ_AP017375.1|WP_096387991.1|3139768_3140395_-|type-I-MYXAN-CRISPR-associated-protein-Cas5/Cmx5/DevS
MIALRVDVPIASFPTSRSREYRETYPVPPPSTVYGMLLSLVGETDRYKHCGVKIALALLSEPAKSITLRKTRRFKSQKIDHKENTRPDFQEILTGIEFIVWIDTGDDLAQPDLCDRITGAFANPGSVQRFGLLCLGESRDLVNSIDLLATTDFEQPLQYLIQDDYGYLSLPYWVDRVGSSKTRWLNYSLEALEVQQPPHSAWTKIQAP
>NZ_AP017375.1|WP_096384662.1|3140398_3141409_-|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MTFYLYGNILTFYGVAANNRGENQGNISTLQKLLWKGETHTKISAEAIRWAIRYYWQKAGYQVNRVWDDEVNDYTWQDPKFNPLDFIDDDLLGFFEAESAKKEPENAPNKSQSENVNNEPQPENAKLENTNQSKSKKKLPKKLKPKGSVTHRKGRLDVTRAISLLPYDGNVTFNAKSGTKTRTSIYGTEFHATRYQFGLGITPESCQDKSRVLALLDALVSICRVGGNHGRFLFDFAPESIVLRWTSDFTPRFLYCFEEDEMDNICTPELLRQIRSGDLEPTEFWISGKIAENLQGSEYSKVNQFSGIKAMVDALKQKIACDLQFCLLDQTNRGEN
>NZ_AP017375.1|WP_096384663.1|3141412_3143110_-|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1
MIVKADEPKIEISLSDPGMTMLHRAGVAGLYMSLKALAKRYPTLKSRQGNFQWTLTKNSISLNWKGNDYEALDWLFSESFQISSDGLISLTGLQSPNWETQLAIHVGIKNTFLQHNQFFRSAEDAIESLTIDNLEVQIEYKKVKSYAHQYYAEQLCPIERLNFKRIFTKLRLFIFIHYTLIGFLFLYEIRQGGNLEQNVVGITGWLYPGATVKHYAYQKETQFTETLERAIALLYAPVACLYFIAPKSYLYDTKTQYCLVIPEITDLKSYPRQRQKLNNWNYQQFLASGYSDAGFRLLTQQATLRILQQNNLKRCQIITFGQTQWTRFQKIRKNVEVIELTDKIIKNYRLCDRYFKNRVVEWEDGNFIAASIVRELIAENLARGFSWWHNFTHTVRSNKLFRLISYEKKGLQQMVKNTDWDEEAQKLFVQACHKALHQIRGKLASKAKEDEYVQFERENERIRSSLIRCQNSEDLRHFLATFWSKAGIISLLSQHWQQLMPLTTKPSNWKLARDLALLALASYTTPEGYKQTSQEEKPKDVEDRKPDQEETSSSTVKTQELSEEE
>NZ_AP017375.1|WP_096384664.1|3143121_3143772_-|type-I-MYXAN-CRISPR-associated-protein-Cas6/Cmx6
MAIAQVGREEQHEEIELIQNPYIELAFPVMGTSLPIDHGYQLYSALKYRLMQLKDWDDISIKTISGKCDRHKRNEINLTNRSKLLVRLPSEKVPFVYSFSGKSLTIGNHKIRLGIPNMNFLQPKSKMRSHIVVIRGYEEPKTFLEAAKRQLDALNIQADIKLISNQDGTPKRKTIAVKQTLVGFGIEANHLSEADSITLQEKGLGGKHKMGCGVFV
>NZ_AP017375.1|WP_096384665.1|3143937_3144960_-|TniQ-family-protein
MAEEGKLNRYKHLIFSNPIDFPETSCLYSLESIAVGTPYTESLSSYLNRLAQEHCVTPQKLIMGEIAPTILGDKYAPEIFSKNVSSLFGNSDAKPAINGMREMTRSLVDALEKLTLRQDLRFLSCVTWKGIISDRGLFRQYKAWCPLCFETWRQARKLIYEPLLWSFREVDFCPEHQCELCDRCPHCDSFQKAISDFSVPGYCSRCRHWLGKSDNTKSSLQEDFKQNHFILQGIGDLIALTPQLKHQPNLKSLKHKFKLILFCFERAIHHDLGQYVVLIKLIEKLKIDLKQNYFKPINLTEIIIPVCQQAKISVSQLFENNYENLAQILAQNIETDYKIL
>NZ_AP017375.1|WP_096384666.1|3145873_3146647_+|ATP-binding-cassette-domain-containing-protein
MIEPIVELKGISKSFGKKIIFNNLDLKIYPGDALGVIGPSGTGKSTILRLIAGLMSPDAGEVYIQGQKRQWTVEEGGESMDVGMVFQQSALFDSLTVNENVGFALYRYSKLPPPQIREQVDLTLEIVGLPGIGDLYPAELSGGMRKRVSLARSIITDPQNTSEAPHIILYDEPTAGLDPVASTKIENLICDLLNQHNIYSTYTIVTHQDSTIRRTTKRIVFLYRGKIQWDGSTSEAYTSDHPLLKQFFSGSVEGSIQ
>NZ_AP017375.1|WP_096384667.1|3146702_3148007_+|MCE-family-protein
MQNLREGRRISPSRQQSTIGLMLLLALGFLGFFILWVQNFSWRGRSFQATILFPNAGGMTPGTNVSYRGVNVGRVQSVVPEPEGVVVEIEISPGDRLIPANSQIEVVQAGLVGESSIDITPLQSLPAEEVKAKPLDPDCDPTIIICQGSRLVGEGALDVNSLIRSLLKISNLISSPQVTTAISSVAQKADSSLGELYLLLKDVRQTDTLQDLDTTLKSLNLASAEVSSLLAQLRQSGTVNSLNSTLTSLDDVAKEVKVFMAANQNKLAVTLETITQTSEQLQVTAKNLDPILREVEGGQLINNLETTFANTAELTANLRDFSKDLNEPTNNLLLEQLLNSARSSFQNLEKITSDVDQVTGNPELREAIEKLIKGLSNLISSTEQLQQQVEYDRALNRLSLEMSELNSQGNLSADPAKQSVPTQPENQKPSKLHP
>NZ_AP017375.1|WP_096384668.1|3148003_3149044_+|WD40-repeat-domain-containing-protein
MNLEQFSRAVLAMMAIALALSIGGCNNSQPTSDVSNSETLTPQTPTTPTTPSPWQKIQLYRTIEAHTTPIRCIAISPDRSTLASGSFGGEVKLWKFPTGELLHSIEMNTTVTSINFNPDGQIFATGDTEGDVKLWQLSTGKLVGNFQGHSFTVQSVAFSPDGQTLASGSWDKTIKLWETRTGKLLYTLEGHKDIVTSVTFSPDGKMLASSDFEGTIELWQIDQIKSSRLFVRLLDSVETIRFSPDGQRLASASSDNSAKLWDVSSGRIIHAFSHSDVVTDLAFSADGQVLASTSRDRTVKLWDVSSGKAIDTLEGNFRTVINISSDNQFLVTGDENGQIQIWQIVE
>NZ_AP017375.1|WP_096384669.1|3149052_3149733_-|TetR/AcrR-family-transcriptional-regulator
MVQPKEDRRIQRTRQLLSTALLKLIEERGYDSLTVNDITEQANVGRATFYLHYQDKEQLLVESLEEMFSQLEDLIAPLSETLGEEHYSTATRLLFQHFGDHHRLYRVLLTEKGAAMVFPRLLEIVSEIAEQIAGQDVISKSVEQPQTLISTNLVGHYVAGAFLGSVVWWLNNNKPYSAEQMAAVYVHLMDPGVTKVLGIASAELPELSDVFTGIVKLARSDKDDSW
>NZ_AP017375.1|WP_096384670.1|3150277_3151657_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MKIPSIHIPYPPRKPLKPKLITTGIILSIGCAGAGWWFWQQQHITKTETPSTITLPLTVQTVVVHKQLVPENRTLTGTVEAIDATTLTSRVTGRVEQLLVQEGTRVEKRQVIAVIDVSDIRAQQQQAAAQIIAARAAVATAQANRSSALTQVDTARGKLSEAEASLLETQAELADAQLNQRRAAYLYREGAVPEFNLDTANTRVNVLQAKIRQIEAMIAQASSSIKSAEAAVGEATASVEQAQAQVSQAEATAQEVAANLDYGVVRAPFAGAIVKKQVEIGEIAGVSQPLVTLESRDRLRLSVAVPEALIDRVQLGQSVTVHIDALNREVSGQVSQIIPAADPQARNFTVKVALAPTANLISGMFGRLQLENTDRTAVIIPPSTLVQRLGVSGVFKVVDGKAQFQTVTVRPINGDAVEVFAGVNEGDRLILNPAPSLQENTKVSESNYQQYSRGASHVE

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Crispr_ID: NZ_AP017375_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP017375_8

4882387-4882643

Orphan

Consensus_repeat	Method
ATTGCGATCGTCCTTCGGGGCGA--GAGGTTTGCTTCGCGT	PILER-CR
ATTGCGATCGTCCTTCGGGGCGAGAGGTTTGCTTCGCGT	CRISPRCasFinder
ATTGCGATCGTCCTTCGGGGCGAGAGGTTTGCTTCGCGT	CRT

3 spacers

The CRISPR arrays of NZ_AP017375_8

>merge|NZ_AP017375|8|4882387-4882643|PILER-CR,CRISPRCasFinder,CRT
ATTGCGATCGTCCTTCGGGGCGAGAGGTTTGCTTCGCGTTGGCGTAGACACTGTTTTTAACGTATTCGGTAGCATTGCGATCGTCCTTCGGGGCGAGAGGTTTGCTTCGCGTAAAAAATTATAAGCAGGTGGCAATTCAAACTCAATTGCGATCGTCCTTCGGGGCGAGAGGTTTGCTTCGCGTACATTTGCGATCGCATAATATTTAAGATCTACTGATTGCGATCGTCCTTCGGGGCGAGAGGTTTGCTTCGCGT

>NZ_AP017375|8|3|4882387-4882643|PILER-CR
ATTGCGATCGTCCTTCGGGGCGAGAGGTTTGCTTCGCGT	TGGCGTAGACACTGTTTTTAACGTATTCGGTAGC
ATTGCGATCGTCCTTCGGGGCGAGAGGTTTGCTTCGCGT	AAAAAATTATAAGCAGGTGGCAATTCAAACTCA
ATTGCGATCGTCCTTCGGGGCGAGAGGTTTGCTTCGCGT	ACATTTGCGATCGCATAATATTTAAGATCTACTG
ATTGCGATCGTCCTTCGGGGCGAGAGGTTTGCTTCGCGT

>NZ_AP017375|8|8|4882387-4882643|CRISPRCasFinder
ATTGCGATCGTCCTTCGGGGCGAGAGGTTTGCTTCGCGT	TGGCGTAGACACTGTTTTTAACGTATTCGGTAGC
ATTGCGATCGTCCTTCGGGGCGAGAGGTTTGCTTCGCGT	AAAAAATTATAAGCAGGTGGCAATTCAAACTCA
ATTGCGATCGTCCTTCGGGGCGAGAGGTTTGCTTCGCGT	ACATTTGCGATCGCATAATATTTAAGATCTACTG
ATTGCGATCGTCCTTCGGGGCGAGAGGTTTGCTTCGCGT

>NZ_AP017375|8|3|4882387-4882643|CRT
ATTGCGATCGTCCTTCGGGGCGAGAGGTTTGCTTCGCGT	TGGCGTAGACACTGTTTTTAACGTATTCGGTAGC
ATTGCGATCGTCCTTCGGGGCGAGAGGTTTGCTTCGCGT	AAAAAATTATAAGCAGGTGGCAATTCAAACTCA
ATTGCGATCGTCCTTCGGGGCGAGAGGTTTGCTTCGCGT	ACATTTGCGATCGCATAATATTTAAGATCTACTG
ATTGCGATCGTCCTTCGGGGCGAGAGGTTTGCTTCGCGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP017375.1\|WP_096386683.1\|4889621_4890179_+\|Ureidoglycolate-hydrolase	unknown	unknown	gnl\|CDD\|377223
NZ_AP017375.1\|WP_096386657.1\|4879014_4879194_+\|ssl1498-family-light-harvesting-like-protein	unknown	unknown	unknown
NZ_AP017375.1\|WP_096386647.1\|4873816_4874659_-\|M56-family-metallopeptidase	unknown	unknown	gnl\|CDD\|320685
NZ_AP017375.1\|WP_096386675.1\|4884880_4887190_-\|PhoD-like-phosphatase	unknown	unknown	gnl\|CDD\|277335
NZ_AP017375.1\|WP_096386677.1\|4887325_4888381_+\|DUF3616-domain-containing-protein	unknown	unknown	gnl\|CDD\|372008
NZ_AP017375.1\|WP_096386672.1\|4884478_4884895_+\|response-regulator	unknown	unknown	gnl\|CDD\|381100
NZ_AP017375.1\|WP_015193161.1\|4877555_4878638_+\|photosystem-II-q(b)-protein	unknown	unknown	gnl\|CDD\|130221
NZ_AP017375.1\|WP_096388140.1\|4880515_4881349_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226729
NZ_AP017375.1\|WP_096386649.1\|4874658_4875078_-\|BlaI/MecI/CopY-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|367747
NZ_AP017375.1\|WP_096386654.1\|4876443_4877418_-\|7,8-didemethyl-8-hydroxy-5-deazariboflavin-synthase-subunit-CofG	unknown	unknown	gnl\|CDD\|180485
NZ_AP017375.1\|WP_096386665.1\|4881454_4882138_-\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|223777
NZ_AP017375.1\|WP_096386690.1\|4892569_4893214_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NZ_AP017375.1\|WP_096386685.1\|4890179_4891118_-\|bifunctional-riboflavin-kinase/FAD-synthetase	unknown	unknown	gnl\|CDD\|235536
NZ_AP017375.1\|WP_096386688.1\|4891358_4892357_-\|M48-family-metalloprotease	unknown	unknown	gnl\|CDD\|320690
NZ_AP017375.1\|WP_096386670.1\|4883224_4883929_-\|TVP38/TMEM64-family-protein	unknown	unknown	gnl\|CDD\|223475
NZ_AP017375.1\|WP_096386680.1\|4888710_4888974_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226580
NZ_AP017375.1\|WP_096386652.1\|4875530_4876400_-\|aldose-epimerase	unknown	unknown	gnl\|CDD\|185702
NZ_AP017375.1\|WP_096386662.1\|4879881_4880478_+\|septum-formation-inhibitor-Maf	unknown	unknown	gnl\|CDD\|178901
NZ_AP017375.1\|WP_096386659.1\|4879323_4879872_+\|photosystem-II-oxygen-evolving-complex-protein-PsbP	unknown	unknown	gnl\|CDD\|366812
NZ_AP017375.1\|WP_096386667.1\|4882678_4883158_+\|peptide-methionine-(S)-S-oxide-reductase-MsrA	unknown	unknown	gnl\|CDD\|376578

Protein	Function_ID	Function_description	E-value
NZ_AP017375.1\|WP_096386683.1\|4889621_4890179_+\|Ureidoglycolate-hydrolase	gnl\|CDD\|377223	pfam04115, Ureidogly_lyase, Ureidoglycolate lyase. Ureidoglycolate lyase (EC:4.3.2.3) is one of the enzymes that acts upon ureidoglycolate, an intermediate of purine catabolism, releasing urea. The enzyme has in the past been wrongly assigned to EC:3.5.3.19, enzymes which release ammonia from ureidoglycolate.	3.78787e-11
NZ_AP017375.1\|WP_096386647.1\|4873816_4874659_-\|M56-family-metallopeptidase	gnl\|CDD\|320685	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase. This family contains peptidase M56, which includes zinc metalloprotease domain in MecR1 as well as BlaR1. MecR1 is a transmembrane beta-lactam sensor/signal transducer protein that regulates the expression of an altered penicillin-binding protein PBP2a, which resists inactivation by beta-lactam antibiotics, in methicillin-resistant Staphylococcus aureus (MRSA). BlaR1 regulates the inducible expression of a class A beta-lactamase that hydrolytically destroys certain ?-lactam antibiotics in MRSA. Both, MecR1 and BlaR1, are transmembrane proteins that consist of four transmembrane helices, a cytoplasmic zinc protease domain, and the soluble C-terminal extracellular sensor domain, and are highly similar in sequence and function. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription. All members contain the zinc metalloprotease motif (HEXXH). Homologs of this peptidase domain are also found in a number of other bacterial genome sequences, most of which are as yet uncharacterized.	3.40808e-32
NZ_AP017375.1\|WP_096386675.1\|4884880_4887190_-\|PhoD-like-phosphatase	gnl\|CDD\|277335	cd07389, MPP_PhoD, Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	1.16181e-07
NZ_AP017375.1\|WP_096386677.1\|4887325_4888381_+\|DUF3616-domain-containing-protein	gnl\|CDD\|372008	pfam12275, DUF3616, Protein of unknown function (DUF3616). This family of proteins is found in bacteria. Proteins in this family are typically between 335 and 392 amino acids in length. There is a conserved GLRGPV sequence motif.	1.64076e-178
NZ_AP017375.1\|WP_096386672.1\|4884478_4884895_+\|response-regulator	gnl\|CDD\|381100	cd17548, REC_DivK-like, phosphoacceptor receiver (REC) domain of DivK and similar proteins. Caulobacter crescentus DivK is an essential response regulator that is involved in the complex phosphorelay pathways controlling both cell division and motility. It localizes cell cycle regulators to specific poles of the cell during division. DivK contains a stand-alone REC domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	3.87972e-30
NZ_AP017375.1\|WP_015193161.1\|4877555_4878638_+\|photosystem-II-q(b)-protein	gnl\|CDD\|130221	TIGR01151, Photosystem_QB_protein, photosystem II, DI subunit (also called Q(B)). This model describes the Photosystem II, DI subunit (also called Q(B)) in bacterial and its equivalents in chloroplast of algae and higher plants. Photosystem II is many ways functionally equivalent to bacterial reaction center. At the core of Photosystem II are several light harvesting cofactors including plastoquinones, pheophytins, phyloquinones etc. These cofactors are intimately associated with the polypeptides, which principally including subunits DI, DII, Cyt.b, Cyt.f and iron-sulphur protein. Together they participate in the electron transfer reactions that lead to the net production of the reducting equivalents in the form of NADPH, which are used for reduction of CO2 to carbohydrates(C6H1206). Phosystem II operates during oxygenic photosynthesis and principal electron donor is H2O. Although no structural data is presently available, a huge body of literature exits that describes function using a variety of biochemical and biophysical techniques. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis].	0
NZ_AP017375.1\|WP_096388140.1\|4880515_4881349_+\|hypothetical-protein	gnl\|CDD\|226729	COG4279, COG4279, Uncharacterized conserved protein [Function unknown].	5.91356e-99
NZ_AP017375.1\|WP_096386649.1\|4874658_4875078_-\|BlaI/MecI/CopY-family-transcriptional-regulator	gnl\|CDD\|367747	pfam03965, Penicillinase_R, Penicillinase repressor. The penicillinase repressor negatively regulates expression of the penicillinase gene. The N-terminal region of this protein is involved in operator recognition, while the C-terminal is responsible for dimerization of the protein.	2.09665e-34
NZ_AP017375.1\|WP_096386670.1\|4883224_4883929_-\|TVP38/TMEM64-family-protein	gnl\|CDD\|223475	COG0398, COG0398, Uncharacterized conserved protein [Function unknown].	8.9987e-25
NZ_AP017375.1\|WP_096386665.1\|4881454_4882138_-\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|223777	COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism].	1.37652e-36
NZ_AP017375.1\|WP_096386690.1\|4892569_4893214_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	1.14466e-47
NZ_AP017375.1\|WP_096386685.1\|4890179_4891118_-\|bifunctional-riboflavin-kinase/FAD-synthetase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	1.68647e-139
NZ_AP017375.1\|WP_096386688.1\|4891358_4892357_-\|M48-family-metalloprotease	gnl\|CDD\|320690	cd07331, M48C_Oma1_like, Peptidase M48C, integral membrane endopeptidase. This subfamily contains peptidase M48C Oma1 (also called mitochondrial metalloendopeptidase OMA1) protease homologs that are mostly uncharacterized. Oma1 is part of the quality control system in the inner membrane of mitochondria, with its catalytic site facing the matrix space. It cleaves and thereby promotes the turnover of mistranslated or misfolded membrane proteins. Oma1 can cleave the misfolded multi-pass membrane protein Oxa1, thus exerting a function similar to the ATP-dependent m-AAA protease for quality control of inner membrane proteins; it cleaves a misfolded polytopic membrane protein at multiple sites. It has been proposed that in the absence of m-AAA protease, proteolysis of Oxa1 is mediated by Oma1 in an ATP-independent manner. Oma1 is part of highly conserved mitochondrial metallopeptidases, with homologs present in higher eukaryotes, eubacteria and archaebacteria, all containing the zinc binding motif (HEXXH). It forms a high molecular mass complex in the inner membrane, possibly a homo-hexamer.	5.67802e-27
NZ_AP017375.1\|WP_096386654.1\|4876443_4877418_-\|7,8-didemethyl-8-hydroxy-5-deazariboflavin-synthase-subunit-CofG	gnl\|CDD\|180485	PRK06245, cofG, FO synthase subunit 1; Reviewed.	1.8751e-170
NZ_AP017375.1\|WP_096386680.1\|4888710_4888974_-\|hypothetical-protein	gnl\|CDD\|226580	COG4095, COG4095, Uncharacterized conserved protein [Function unknown].	0.000249357
NZ_AP017375.1\|WP_096386652.1\|4875530_4876400_-\|aldose-epimerase	gnl\|CDD\|185702	cd09025, Aldose_epim_Slr1438, Aldose 1-epimerase, similar to Synechocystis Slr1438. Proteins similar to Synechocystis Slr1438 are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.	1.10818e-131
NZ_AP017375.1\|WP_096386662.1\|4879881_4880478_+\|septum-formation-inhibitor-Maf	gnl\|CDD\|178901	PRK00148, PRK00148, Maf-like protein; Reviewed.	1.56639e-121
NZ_AP017375.1\|WP_096386659.1\|4879323_4879872_+\|photosystem-II-oxygen-evolving-complex-protein-PsbP	gnl\|CDD\|366812	pfam01789, PsbP, PsbP. This family consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria. The 23 KDa PsbP protein is required for PSII to be fully operational in vivo, it increases the affinity of the water oxidation site for Cl- and provides the conditions required for high affinity binding of Ca2+.	3.40016e-74
NZ_AP017375.1\|WP_096386667.1\|4882678_4883158_+\|peptide-methionine-(S)-S-oxide-reductase-MsrA	gnl\|CDD\|376578	pfam01625, PMSR, Peptide methionine sulfoxide reductase. This enzyme repairs damaged proteins. Methionine sulfoxide in proteins is reduced to methionine.	4.16798e-86

>NZ_AP017375.1|WP_096386665.1|4881454_4882138_-|rhomboid-family-intramembrane-serine-protease
MIPLNDDNPSYKTPVVVYVLIGINIVVFIHQMSLGSQLNDFFELYAVIPRQLSASFAGSPSNQPVPEYLTLITSQFLHGGLAHIGFNMLFLWIFGNNIEDSLGHFKFLLFYLGCGVLAGLTHWFFDMNSVTPTVGASGAIAGVMGAYILKYPKAQILTLLPLGFFITTVRIPAVFFLGFWFIQQAFSSVASLGLPNNTAGVAYWAHAGGFIFGAILGPLLGLFSDRR
>NZ_AP017375.1|WP_096388140.1|4880515_4881349_+|hypothetical-protein
MELANRQWWVERWLELLDSYRFKKRLERGRNYAREGNVLSIEFIGSQVLAKVQGSEAQPYQVSLSLASFSDEDWSFITQTMSEKAIFSAQLLAGEMPANIEDVFTANGLSLFPFSLTEIRSRCSCPDKANPCKHIAAVYYQLSDRFSEDPFVLFQLRGRTKTEILDTLRQLRSNKVGSESKTSLLDSISNPITTEKSSELSKSKTPENIDLKSFWQYNKPLETSLVVITPPTEGKTILDLLGDIPLATADAEALKQFLIQVYQTASQQAIMTALNRE
>NZ_AP017375.1|WP_096386662.1|4879881_4880478_+|septum-formation-inhibitor-Maf
MSLPVFVLASASPARKKLLQLAGIEPIVCSSNFDESQIHSEDAIELVETLAKCKAETVVNQFSDALILGCDSVLEIAGNIYGKPESPQEAIARWQIMRGKVGILYTGHALLDLSQNQQLVSCGITKVHFADLSDREIEAYVASGEPLKCAGSFALEGKGGLFVKKIEGCHSNVIGLSLPLLSQMLGQLGYSVSDFWQS
>NZ_AP017375.1|WP_096386659.1|4879323_4879872_+|photosystem-II-oxygen-evolving-complex-protein-PsbP
MWKSLITSLLIVVSIILSSCSAGVSGLQSYVNPSQGYEFLYPNGWIPVDLKKPSPGVDVVFRDLIERGENLSVIVSDVPADSTLEELGTPSEVGYRFFKMMNNPEFDRQAEFLTAESKDRDGRTYYLLEYEVELPNQLPRHNVASVAVSRGKLFTFNLSTTTDRWSKVKDTFEVAARSFTVR
>NZ_AP017375.1|WP_096386657.1|4879014_4879194_+|ssl1498-family-light-harvesting-like-protein
MPYTEEDGGRLNNFAVEPRMYTAEPPTKKQQRNYLVFGVLALLLLGGVVSVAVFASNAG
>NZ_AP017375.1|WP_015193161.1|4877555_4878638_+|photosystem-II-q(b)-protein
MTTTLQQRESLGAWERFCQWITSTNNRIYIGWFGVLMIPTLLTATTCFIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLVVFHFLIGVFTYLGRQWELSYRLGMRPWICVAYSAPVSAATAVFLIYPLGQGSFSDGMPLGISGTFNFMFVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLVRETTETESQNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLGAWPVIGIWFTAMGISTMAFNLNGFNFNQSIMDSQGHVVNTWADILNRANLGFEVMHERNAHNFPLDLASGDIAPVALTAPAING
>NZ_AP017375.1|WP_096386654.1|4876443_4877418_-|7,8-didemethyl-8-hydroxy-5-deazariboflavin-synthase-subunit-CofG
MNKTITYSPAYTLVPTYQCFNRCSYCNFRTNIAQGEWLTVEKAREQLHQPKLKNVSEILLLSGEVHPLSENRQFWFERIYQLCVLALDLNFLPHTNAGILSWQEMEQLKQVNVSMGLMLEQLTPKLLNTVHKYAPSKVPQLRLQQLEWAGKLKIPFTTGLLLGIGETESDWWDSLAAIANIQQQWGHIQEVILQPHSLGNQQVISTTSFSLERLPEVIARSREILPDSITIQIPPNLVVEPNLLLECLDAGARDLGGISPKDEVNPDYPHLTAEYLQSVLETAGWELVPRLPIYPQYYSWLSLPLQKLVKAKEKALRCNKLINR
>NZ_AP017375.1|WP_096386652.1|4875530_4876400_-|aldose-epimerase
MFEIIQKQEQYQTYVMTDLQAQSEIEIVPERGAIITRWRVKEEEILYLDRERFTHPELSIRGGIPILFPICGNLPNNTYTYQNQTYQLKQHGFARDLPWEVISTNNQDCASITLALRSNEQTLMVYPFEFKILFTYQLKGNSLRILQTYSNQSEAMMPFATGLHPYFQVEDKNKLQFEIPGTFYQDQISQETYPFTGKFDFTQTEIDVAFTQIDKHHTAIADSNKKLKISINYSDCYTTLVFWAIKGKDYVCLEPWTAPRNALNTQEKLIWLEPGNSYESVVEINLSYF
>NZ_AP017375.1|WP_096386649.1|4874658_4875078_-|BlaI/MecI/CopY-family-transcriptional-regulator
MTPLPEYRPKKLSLGPLETEILEIVWQLGNATVKDVHQKILADPNRDLAYTSVTTVLRRLTAKGWLKSNKKGKVFYWQPMVSKEQAQAIKSYEHLNRFLAISNPDLVASFVDSLDVVSLEQIEAITARIQAIRLQREEK
>NZ_AP017375.1|WP_096386647.1|4873816_4874659_-|M56-family-metallopeptidase
MHLMMILTALIIAWGLRCIELEPKGSWKQRWQRSLFSLMFPPLLLLSTAIAVICMGFQGQMLGMQASWLGYSLAIAFAIASGCLLLKLAYQGYQLKHQINQYEQKKLAQQTVRLLQTDFPYSAQIGFWNSELVISQGLLNLLDQEHLAVVLAHEQAHVYYRDNFCFFWLGWLRYLTGWLPNSESLWQELLLLREVRADLKAAQEVDPLLLAESLIKIVRNPLESSFIFCANFSCNLLQGRLSERIDFILTEPEPSPSPQWYSWSWILLLFLPLLTIPLHY
>NZ_AP017375.1|WP_096386667.1|4882678_4883158_+|peptide-methionine-(S)-S-oxide-reductase-MsrA
MEQATFGAGCFWKVEAAFRQIPGVVSTSVGYMGGHFPNPSYLDVLSRITGHAEVAQIEFNPQIVSYQQLLNIFWSIHDPTQINRQGADLGEQYRSVIFYHNQEQFLTAQSSLKQLQQSKKFAKEIVTQIQPKSEYYLADEYHQQYLEKQQLQTKNLSSK
>NZ_AP017375.1|WP_096386670.1|4883224_4883929_-|TVP38/TMEM64-family-protein
MSGKFLPKHKLKLLIGCLAILAAIALLGWLTFRDYLTYVDDWLAQLGYWSIPAFLGIYVLATLVGLPAIFLFLAAGSLFGFNKGVFLVSLADTISASACYGLGRTVARKRIKRWLTQRPQFAQLDHAVAEKGWKIVFLTRLSPILPSNILNYGFSLTRIDFWHYIFFTWLGMLPVIGLYVYLGSVGTNLIKGEAHRGTMALSVVGILATIGVLIYTAKLTRQVLSSQFNSSKKN
>NZ_AP017375.1|WP_096386672.1|4884478_4884895_+|response-regulator
MQAESKYPLILVVEDDEDNLILISHALIFFKYTFITANNAQTALNLTKKFPLDLIIVDIVLRDMNGLELVHDLRHGKSTKNIPIIAVTALSRTEDRELLFAAGCNDYLCKPYLIDELDQKIRYNLPPQFFPSGALRVA
>NZ_AP017375.1|WP_096386675.1|4884880_4887190_-|PhoD-like-phosphatase
MRQTLDFLPNINDLPLILAGPILRRTEADTVTVWLALKHASRVTLKIYTTAVGKGQSLERQIGEGGSQTIQLGKYLHLVIVTAQIKKQDRLEPGQVYAYDLYFENQEINLVTALAQANISYFEHQLPTFSLPAADLNQLKIIHGSCRKPHGGGRDILSCLDILIETSAHLADERPQQLFLTGDQIYGDDVADPFLWLSQRVSDLLLGWEEELPLLEGVIKPSELPPGKRSEIARIEGGFTAMLQKQPEKAKSHLFSFGEYATAYLLAWSPVLMPSQFPAGQEIFTDSKLAKNWDREMLALDSFIADLPKVRRALANIPTYTICDDHDISDDWYLNRLWCDRVLSKPLGRRVIQNGLLAYALFQAWGNTPEQFQPGTSGEKLLKAAVQWSSSAGTDPLSAVAIIRYLGIPPIELETGLPKLQPDEDVFILQRDREALTWHYNIKGSKHEVFVLDTRTWRGYPQADKQGKQPPMLLCPMAFEQQLLTPLARSDREQIEATLIVLPTNLVTLGLIDKVQRFELKRNRVFSNDVGDSWNFHQTAFAKLLLSLAHSRDRIIILSGDIHYSCAIRLTHWFYNPTSNAVLVQLTSSAIKNSELSTRLVHTRIKNLFPEPTEHWLGWQKSLRLLKLPQTLWWQSFGFKPKAPKISSASSPPDWQYRLEWFYRKPFKPLFKPSSQLLTNHKSSFWQKIFKSLLLWLWRNPWLQEGAEVVGRNNLSLVRFQWSSVDEHKTVIQETYWHPPWNSQGVVKSNYVISLNPQSPPPLPRLRDS
>NZ_AP017375.1|WP_096386677.1|4887325_4888381_+|DUF3616-domain-containing-protein
MTEGFLLSRVLLRFEDQSENLIGDLSAVAITPDGSLWLGSDELLGIERVSLVEPNIFAHHQHFPLGDFIKLLDQENEIDIEGFDYSDGYLWLTGSHSTKRKKAKGDLQRLTKIKTEPNRYLLARVPIVDGQPVKCTTEDQNQQKRAACLETNGAGNILIDALKQDEHLGAIVSSELPSKDNGLDIEGLAVHQNKIFLGLRGPVLRGWAIILELEIEETEPGILTLKKIANTDRLYKKHFINLDGLGVRELCFHGENLIILAGPTMTLDGAMRVFRWYNAVNYSSDSLSEQEAGKLEILFDLPLKTGTDRAEGLALYTCLGKTDSLLIVYDSPDPSRRPQPGEIFADVFQLK
>NZ_AP017375.1|WP_096386680.1|4888710_4888974_-|hypothetical-protein
MKEIVTFFFGLGFVFNASLFIPQAIRILKNKSARNVSLITFAGFNFIQLDGVLYGYYQNDLILLYGNSISFVTCGAVTLLATYYKNK
>NZ_AP017375.1|WP_096386683.1|4889621_4890179_+|Ureidoglycolate-hydrolase
MSESILGQQQGQQKQPNQETLHVENRQKCSLHAEWITPESFQPYGQLIPPAEDGQVYSHKDAQLDLTKGTPRFYIMRLHRRGRIFHKITRHNLCTQCLGSLAGKDWLIAVAPPSEASQPDLANMAAFRIPGDCFIKLEVGTWHAGPYFEHEVVDFYNLELSDTNVVDHFTHDFLKSQNLEFEILV
>NZ_AP017375.1|WP_096386685.1|4890179_4891118_-|bifunctional-riboflavin-kinase/FAD-synthetase
MRIADSPEQILTPTAIALGNFDGIHRGHQKVLQPILQLSHHDSHRSYPTVVSFSPHPREFFTGEQLTLLTPVEEKAQLLSKIGIKQLVLIPFNQQLASLSPQEFVAEIIVKQLQAIAISVGEDFCFGYRRQGTVKDLDAIASKYGIEVQINSLQQCNYQQHHHHGVRISSSLIRQALETGDIRHANYMLGRAYSLTGTVVQGQKIGRTIGFPTANLQLPPNKFLPRYGVYAVNVIDDRFKIRGVMNIGCRPTVDGINPAIEVHLLDWSGDLYGQTLTVSLEKFLRPEQKFPSLEALKQQITADCQAAKNLNF
>NZ_AP017375.1|WP_096386688.1|4891358_4892357_-|M48-family-metalloprotease
MTKLFKKIAIFSSLSAILLSNISIVQAQTANQANNIYQQAQKDLPEDLYVIYRIVDRLARANGIDDNPWRIVVVDEYNINAFATDVNLLAMYTGILDQLAGDASAIACVVGHEMAHHLKRHIAMSPVQEVEIKKRIQQEAEQEVMAELQDAESDVTNAAVGEAVVRTGGGLLGGLGNVFGNIGGNVLANERNQRAKTAEERIKEIVALKEQELNDSIAENSRTHEFEADQAGYMYIAKAGFEPEGCLRVMEVLGRTPGAEFDSTHPAIPKRIEQLKQLITQYPASTLAAEGKAKISASQPLTYDLSKDGTSLRINSRRGGNTSSNINDMFGQ
>NZ_AP017375.1|WP_096386690.1|4892569_4893214_-|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MVKYKEREPFASFALYHFAKWSLVNPLFSTYFRGKIYGGEKVPQSGSLIVVSNHASDFDPPMISNAVRRPVAFMAKEELFQVPVLKQTIKLYGAYPVKRGKSDRSSLKAAMSALENGWIAGIFLDGTRTPDAKITNPKLGAALIAAKTQVPLIPVSLWGTEKIFQPGSYLPRSVPITIRIADVISPPQSTQREELQAVTDHCAEVINQMHALGR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_AP017375_6	6.1\|2942840\|33\|NZ_AP017375\|PILER-CR	2942840-2942872	33	NZ_CP029455	Bacillus cereus strain FORC087 plasmid pFORC087.1, complete sequence	168527-168559	10	0.697
NZ_AP017375_6	6.4\|2943058\|33\|NZ_AP017375\|PILER-CR	2943058-2943090	33	NZ_CP036488	Rahnella aquatilis strain MEM40 plasmid pMEM40-1, complete sequence	314042-314074	10	0.697
NZ_AP017375_6	6.5\|2942839\|34\|NZ_AP017375\|CRISPRCasFinder	2942839-2942872	34	NZ_CP029455	Bacillus cereus strain FORC087 plasmid pFORC087.1, complete sequence	168527-168560	11	0.676
NZ_AP017375_6	6.8\|2943057\|34\|NZ_AP017375\|CRISPRCasFinder	2943057-2943090	34	NZ_CP036488	Rahnella aquatilis strain MEM40 plasmid pMEM40-1, complete sequence	314041-314074	11	0.676

1. spacer 6.1|2942840|33|NZ_AP017375|PILER-CR matches to NZ_CP029455 (Bacillus cereus strain FORC087 plasmid pFORC087.1, complete sequence) position: , mismatch: 10, identity: 0.697

gccaaggaacaaatagccattttccgccaccag	CRISPR spacer
accaacgaacatatagccattttcctgaatatc	Protospacer
.**** ***** *************   *.

2. spacer 6.4|2943058|33|NZ_AP017375|PILER-CR matches to NZ_CP036488 (Rahnella aquatilis strain MEM40 plasmid pMEM40-1, complete sequence) position: , mismatch: 10, identity: 0.697

acttcttttgctcgtgatttttctctttctttt	CRISPR spacer
ttcggttttgctcatgatttttctccttcgctg	Protospacer
 ..  ********.***********.*** .*

3. spacer 6.5|2942839|34|NZ_AP017375|CRISPRCasFinder matches to NZ_CP029455 (Bacillus cereus strain FORC087 plasmid pFORC087.1, complete sequence) position: , mismatch: 11, identity: 0.676

tgccaaggaacaaatagccattttccgccaccag	CRISPR spacer
caccaacgaacatatagccattttcctgaatatc	Protospacer
..**** ***** *************   *.

4. spacer 6.8|2943057|34|NZ_AP017375|CRISPRCasFinder matches to NZ_CP036488 (Rahnella aquatilis strain MEM40 plasmid pMEM40-1, complete sequence) position: , mismatch: 11, identity: 0.676

tacttcttttgctcgtgatttttctctttctttt	CRISPR spacer
gttcggttttgctcatgatttttctccttcgctg	Protospacer
  ..  ********.***********.*** .*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

624306 : 665055

Escherichia_phage(25.0%)

protease,transposase,integrase

attL 621186:621201|attR 671970:671985

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
621186:621201	attL	NA	NA	NA	NA
WP_096380622.1\|624306_625473_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_096380626.1\|625609_625819_+	hypothetical protein	NA	NA	NA	NA
WP_096380629.1\|625986_626958_-	AAA family ATPase	NA	NA	NA	NA
WP_096380632.1\|626972_628562_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_096380635.1\|629008_630436_-	glycogen synthase GlgA	NA	NA	NA	NA
WP_096380639.1\|630565_631822_-	aspartate aminotransferase	A0A142C026	Faustovirus	4.5e-08	29.7
WP_096380643.1\|632229_632718_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA
WP_096380646.1\|632714_633959_-	glutamate-5-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_096380647.1\|633987_634401_-	hypothetical protein	NA	NA	NA	NA
WP_096380650.1\|634769_635138_+	single-stranded DNA-binding protein	A0A077SK05	Escherichia_phage	3.8e-16	38.5
WP_096380654.1\|635100_636747_+	glycosyltransferase family 39 protein	NA	NA	NA	NA
WP_096380656.1\|637248_638385_+	glycosyltransferase	NA	NA	NA	NA
WP_096380660.1\|638501_639233_+	sugar transferase	NA	NA	NA	NA
WP_096380662.1\|639406_640480_+	GDP-mannose 4,6-dehydratase	M1HGM9	Acanthocystis_turfacea_Chlorella_virus	3.0e-117	60.8
WP_096380665.1\|640533_641472_+	GDP-L-fucose synthase	A0A1D8KUY4	Synechococcus_phage	8.2e-63	41.4
WP_096380668.1\|641941_644344_+	hybrid sensor histidine kinase/response regulator	A0A1V0SGX0	Hokovirus	1.1e-34	38.1
WP_096380671.1\|644381_644609_-	ferredoxin family protein	NA	NA	NA	NA
WP_096380674.1\|644728_645520_-	DUF2993 domain-containing protein	NA	NA	NA	NA
WP_096380676.1\|645589_646498_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_096380679.1\|646818_647112_+\|protease	ATP-dependent Clp protease adapter ClpS	NA	NA	NA	NA
WP_096387713.1\|647187_647997_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_096380681.1\|648001_649231_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_096380684.1\|649460_650285_+	acyl-CoA desaturase	F2NZ38	Diadromus_pulchellus_ascovirus	3.9e-24	33.0
WP_096380688.1\|650296_651694_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_096380691.1\|651780_652257_-	hypothetical protein	NA	NA	NA	NA
WP_096387715.1\|652521_653091_-	hypothetical protein	NA	NA	NA	NA
WP_096380693.1\|653462_656060_+	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	NA	NA	NA	NA
WP_096387717.1\|656199_656370_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_096380697.1\|656395_656596_+	type II toxin-antitoxin system prevent-host-death family antitoxin	NA	NA	NA	NA
WP_096379552.1\|658046_659402_-\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_096387719.1\|659516_661298_-	DUF262 domain-containing protein	A0A220NTM2	Escherichia_phage	1.2e-06	30.5
WP_096380700.1\|662265_662610_+	hypothetical protein	NA	NA	NA	NA
WP_096380702.1\|662846_663281_+	hypothetical protein	NA	NA	NA	NA
WP_096380705.1\|663567_664038_+	DUF1772 domain-containing protein	NA	NA	NA	NA
WP_096380709.1\|664053_665055_-\|integrase	tyrosine-type recombinase/integrase	A0A142F1N9	Bacillus_phage	8.6e-10	23.6
671970:671985	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1865484 : 1910859

Paenibacillus_phage(15.38%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096379418.1\|1865484_1865793_+\|transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	9.4e-08	31.5
WP_096379552.1\|1866616_1867972_+\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_096383468.1\|1868248_1869976_+	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	1.6e-59	32.5
WP_096383471.1\|1870133_1870598_+	hypothetical protein	NA	NA	NA	NA
WP_096383475.1\|1870807_1871296_+	hypothetical protein	NA	NA	NA	NA
WP_096383477.1\|1871481_1871832_-	carbon dioxide-concentrating mechanism protein CcmK	NA	NA	NA	NA
WP_096383480.1\|1872040_1872355_-	carbon dioxide-concentrating mechanism protein CcmK	NA	NA	NA	NA
WP_096383483.1\|1872443_1873112_-	hypothetical protein	NA	NA	NA	NA
WP_096383488.1\|1873228_1874212_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_096383491.1\|1874380_1874599_-	type II toxin-antitoxin system HicB family antitoxin	G9BWD3	Planktothrix_phage	3.6e-30	86.1
WP_096383493.1\|1874604_1874820_-	type II toxin-antitoxin system HicA family toxin	G9BWD4	Planktothrix_phage	1.1e-26	78.9
WP_096383497.1\|1874870_1876520_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_096383501.1\|1876846_1877314_+	helix-turn-helix domain-containing protein	K4ICM4	Acidithiobacillus_phage	4.3e-20	49.0
WP_096383503.1\|1878187_1879864_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_096383507.1\|1880074_1880347_-	photosystem I reaction center subunit PsaK	C3V6N5	uncultured_virus	4.4e-09	43.4
WP_096383511.1\|1880500_1881157_+	phosphoribosylanthranilate isomerase	NA	NA	NA	NA
WP_096383514.1\|1881380_1882346_+	hypothetical protein	NA	NA	NA	NA
WP_096383518.1\|1882591_1883437_+	DNA adenine methylase	A0A1S5PRR3	Streptococcus_phage	6.5e-67	49.8
WP_096383521.1\|1883494_1883995_+	4-diphosphocytidyl-2C-methyl-D-erythritol kinase	NA	NA	NA	NA
WP_096383524.1\|1884086_1886126_-	HAMP domain-containing protein	W8CYF6	Bacillus_phage	1.2e-31	34.6
WP_096383527.1\|1886195_1887461_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
WP_096383530.1\|1888192_1888699_-\|transposase	transposase	NA	NA	NA	NA
WP_096387865.1\|1888664_1889012_-\|transposase	transposase	NA	NA	NA	NA
WP_096379418.1\|1889196_1889505_+\|transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	9.4e-08	31.5
WP_096383533.1\|1890224_1891238_-	AI-2E family transporter	NA	NA	NA	NA
WP_096383536.1\|1891571_1894394_+	cation-transporting P-type ATPase	A0A1J0FA34	Only_Syngen_Nebraska_virus	2.9e-79	29.2
WP_096383539.1\|1894516_1894915_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_096383542.1\|1894911_1895244_-	hypothetical protein	NA	NA	NA	NA
WP_096387867.1\|1895292_1895484_-	hypothetical protein	NA	NA	NA	NA
WP_096383546.1\|1895501_1895948_-	hypothetical protein	NA	NA	NA	NA
WP_096383550.1\|1895947_1899517_-	methionine synthase	NA	NA	NA	NA
WP_096383554.1\|1899732_1900053_+	hypothetical protein	NA	NA	NA	NA
WP_096383558.1\|1900093_1900498_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_096383562.1\|1900504_1900756_-	hypothetical protein	NA	NA	NA	NA
WP_096383565.1\|1901095_1901365_+	hypothetical protein	NA	NA	NA	NA
WP_096383569.1\|1901530_1902076_+	DUF4334 domain-containing protein	NA	NA	NA	NA
WP_096383572.1\|1902315_1903044_+	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	7.8e-61	55.1
WP_096383575.1\|1903293_1903713_-	hypothetical protein	NA	NA	NA	NA
WP_096383577.1\|1903788_1904064_+	acylphosphatase	NA	NA	NA	NA
WP_096383579.1\|1904607_1905183_+	hypothetical protein	NA	NA	NA	NA
WP_096387869.1\|1905219_1907280_+	S9 family peptidase	A0A1V0SHT0	Klosneuvirus	1.5e-77	33.0
WP_096383581.1\|1907582_1909256_+	chaperonin GroEL	A0A240F779	uncultured_virus	9.6e-155	53.7
WP_096379552.1\|1909503_1910859_-\|transposase	IS701 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

2251358 : 2258644

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096383971.1\|2251358_2252426_+	HAMP domain-containing histidine kinase	W8CYM9	Bacillus_phage	5.2e-13	37.6
WP_096383972.1\|2252710_2253520_+	glucose 1-dehydrogenase	A0A0N9R355	Chrysochromulina_ericina_virus	1.1e-15	26.3
WP_096383973.1\|2253715_2253931_+	hypothetical protein	NA	NA	NA	NA
WP_096383974.1\|2254191_2254470_+	DUF1830 domain-containing protein	NA	NA	NA	NA
WP_096383975.1\|2254487_2255363_+	sigma-70 family RNA polymerase sigma factor	G8CLC7	Synechococcus_phage	5.3e-40	37.0
WP_096387911.1\|2255371_2256016_-	histidine phosphatase family protein	E3T4P5	Cafeteria_roenbergensis_virus	1.5e-07	30.1
WP_096383976.1\|2256587_2257544_+	RNA polymerase sigma factor, RpoD/SigA family	F4YCU2	Synechococcus_phage	9.6e-43	36.0
WP_096383977.1\|2257693_2258032_+	DUF760 domain-containing protein	NA	NA	NA	NA
WP_096383978.1\|2258221_2258644_+	8-oxo-dGTP diphosphatase MutT	G8DF69	Emiliania_huxleyi_virus	4.6e-05	26.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_AP017376

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

12579 : 120149

Escherichia_phage(12.5%)

protease,integrase,transposase

attL 18406:18465|attR 107534:108523

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096382424.1\|12579_13740_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_096388237.1\|13803_14067_+	hypothetical protein	NA	NA	NA	NA
WP_096388239.1\|14558_15104_+	hypothetical protein	NA	NA	NA	NA
WP_096388241.1\|15105_15477_+	hypothetical protein	NA	NA	NA	NA
WP_096388243.1\|15473_15659_+	hypothetical protein	NA	NA	NA	NA
WP_096388245.1\|15655_15904_+	hypothetical protein	NA	NA	NA	NA
WP_096388247.1\|15980_16568_+	Uma2 family endonuclease	NA	NA	NA	NA
WP_096388249.1\|16576_17449_-	hypothetical protein	NA	NA	NA	NA
WP_041620505.1\|17789_18113_-	XRE family transcriptional regulator	NA	NA	NA	NA
WP_096388425.1\|18127_18409_-	hypothetical protein	NA	NA	NA	NA
18406:18465	attL	NA	NA	NA	NA
WP_096388251.1\|19817_20774_+\|integrase	site-specific integrase	A0A1P8DJ76	Virus_Rctr85	1.7e-47	40.7
18406:18465	attL	NA	NA	NA	NA
WP_096388253.1\|20796_21096_-	HigA family addiction module antidote protein	M9MUN2	Rhodococcus_phage	1.6e-12	46.5
WP_096388255.1\|21107_21401_-	plasmid maintenance system killer protein	A0A222YWE2	Escherichia_phage	6.8e-08	43.5
WP_096388257.1\|21462_23697_-	AAA family ATPase	G3MBE0	Bacillus_virus	7.1e-105	46.2
WP_096388259.1\|23755_27307_-	DUF3854 domain-containing protein	A0A1L2BX29	Bacteriophage	8.9e-17	24.4
WP_096388261.1\|27985_29437_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_096383271.1\|29630_30689_+\|transposase	transposase	NA	NA	NA	NA
WP_096379418.1\|32757_33066_-\|transposase	transposase	NA	NA	NA	NA
WP_096388263.1\|33118_33475_-	hypothetical protein	NA	NA	NA	NA
WP_096388265.1\|33505_33706_-	hypothetical protein	NA	NA	NA	NA
WP_096388267.1\|34237_34480_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_096388427.1\|34626_36351_+	mechanosensitive ion channel family protein	NA	NA	NA	NA
WP_096388269.1\|36917_37685_+	pyrroloquinoline quinone biosynthesis protein	NA	NA	NA	NA
WP_096388271.1\|37688_38384_+	3-oxoacyl-ACP reductase FabG	NA	NA	NA	NA
WP_096388273.1\|38663_39596_+	AAA family ATPase	NA	NA	NA	NA
WP_096388275.1\|39631_39970_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A141GEX6	Brucella_phage	2.4e-20	62.2
WP_096388277.1\|39962_40262_+	putative addiction module antidote protein	NA	NA	NA	NA
WP_096379552.1\|41696_43052_-\|transposase	IS701 family transposase	NA	NA	NA	NA
40509:41660	attR	NA	NA	NA	NA
WP_096388279.1\|43325_46913_-	NACHT domain-containing protein	NA	NA	NA	NA
40509:41660	attR	NA	NA	NA	NA
WP_096388281.1\|47176_48592_+	hypothetical protein	NA	NA	NA	NA
WP_096388283.1\|48630_52224_+	hypothetical protein	NA	NA	NA	NA
WP_096388285.1\|52385_53063_-	DevA family ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.7e-71	61.5
WP_096388287.1\|53073_54246_-	FtsX-like permease family protein	NA	NA	NA	NA
WP_096388289.1\|54242_55565_-	ABC exporter membrane fusion protein	NA	NA	NA	NA
WP_096388291.1\|55604_56915_-	cytochrome P450	S4VQU1	Pandoravirus	2.1e-11	28.2
WP_096388293.1\|57012_58170_-	sulfotransferase	NA	NA	NA	NA
WP_096388295.1\|58162_59518_-	hypothetical protein	NA	NA	NA	NA
WP_096383271.1\|60065_61124_+\|transposase	transposase	NA	NA	NA	NA
WP_096388297.1\|61177_62023_-	pyridoxamine 5-phosphate oxidase	NA	NA	NA	NA
WP_096388299.1\|62032_62629_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_096388301.1\|62841_63084_-	DUF4278 domain-containing protein	NA	NA	NA	NA
WP_096388303.1\|63470_67061_+	hypothetical protein	NA	NA	NA	NA
WP_096388305.1\|67337_67571_-	Nif11-like leader peptide family natural product precursor	NA	NA	NA	NA
WP_096388307.1\|67756_68116_+	hypothetical protein	NA	NA	NA	NA
WP_096388309.1\|68145_69186_-	ParB/RepB/Spo0J family partition protein	NA	NA	NA	NA
WP_096379418.1\|69787_70096_-\|transposase	transposase	NA	NA	NA	NA
WP_096388311.1\|70936_73438_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_096388314.1\|73516_74149_-\|integrase	tyrosine-type recombinase/integrase	A0A2L1IV36	Escherichia_phage	3.4e-28	37.4
WP_096388316.1\|74219_75623_-\|transposase	ISKra4 family transposase	NA	NA	NA	NA
WP_096388318.1\|75619_76294_-	plasmid pRiA4b ORF-3 family protein	NA	NA	NA	NA
WP_015211880.1\|76515_76764_+	type II toxin-antitoxin system VapB family antitoxin	NA	NA	NA	NA
WP_096388320.1\|76753_77149_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_096388322.1\|77542_78034_+	hypothetical protein	NA	NA	NA	NA
WP_096388324.1\|78059_78701_+	hypothetical protein	NA	NA	NA	NA
WP_096388326.1\|78878_79832_+\|integrase	tyrosine-type recombinase/integrase	S5M9V8	Brevibacillus_phage	5.5e-14	25.9
WP_096388328.1\|79964_80780_+	hypothetical protein	NA	NA	NA	NA
WP_096383530.1\|80787_81294_-\|transposase	transposase	NA	NA	NA	NA
WP_096387865.1\|81259_81607_-\|transposase	transposase	NA	NA	NA	NA
WP_071882437.1\|81695_81947_-	WGR domain-containing protein	NA	NA	NA	NA
WP_096388330.1\|82083_82956_+	hypothetical protein	NA	NA	NA	NA
WP_096388332.1\|82937_83663_+	hypothetical protein	NA	NA	NA	NA
WP_096388334.1\|83816_84350_-	hypothetical protein	NA	NA	NA	NA
WP_096388336.1\|84370_85168_-	ParA family protein	A0A240F4U1	Ochrobactrum_phage	4.0e-10	26.4
WP_096388338.1\|86225_86504_-\|transposase	transposase	NA	NA	NA	NA
WP_015211937.1\|87772_88450_+	response regulator transcription factor	NA	NA	NA	NA
WP_096388340.1\|88473_90408_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_096388342.1\|90536_91469_+	hypothetical protein	NA	NA	NA	NA
WP_096388344.1\|91807_93733_+	DNA-directed DNA polymerase	A0A2H4KIR4	Gemmata_phage	2.3e-35	27.7
WP_015211941.1\|93826_94093_+	CopG family protein	NA	NA	NA	NA
WP_015211942.1\|94097_94445_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA
WP_096388346.1\|94471_95452_-	hypothetical protein	NA	NA	NA	NA
WP_015211944.1\|95527_95809_+	hypothetical protein	NA	NA	NA	NA
WP_096388348.1\|96036_96693_-	hypothetical protein	NA	NA	NA	NA
WP_096388429.1\|96782_97124_-	hypothetical protein	NA	NA	NA	NA
WP_096388350.1\|97164_98913_-	VWA domain-containing protein	NA	NA	NA	NA
WP_096388352.1\|99042_99399_-	hypothetical protein	NA	NA	NA	NA
WP_096388354.1\|99581_100367_-	hypothetical protein	A0A2K9L3L2	Tupanvirus	8.8e-18	25.1
WP_096388356.1\|100489_101275_-	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA
WP_096388358.1\|101721_103107_+	protein kinase	M1HY05	Paramecium_bursaria_Chlorella_virus	3.4e-12	27.0
WP_096388360.1\|103108_103666_-	Uma2 family endonuclease	NA	NA	NA	NA
WP_096388362.1\|103745_104978_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A0R8V9X2	Thermobifida_phage	2.3e-121	60.7
WP_096388364.1\|105027_105792_-	FHA domain-containing protein	NA	NA	NA	NA
WP_096379418.1\|106671_106980_+\|transposase	transposase	NA	NA	NA	NA
WP_096388366.1\|108212_108767_+	hypothetical protein	NA	NA	NA	NA
WP_096388368.1\|108946_112150_+\|protease	serine protease	NA	NA	NA	NA
WP_096388370.1\|112351_112600_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_015211958.1\|112619_112817_+	hypothetical protein	NA	NA	NA	NA
WP_096388372.1\|112841_113141_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_096388374.1\|113122_113434_+	nucleotidyltransferase family protein	NA	NA	NA	NA
WP_096388376.1\|113465_114125_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_096388378.1\|114132_114789_-	hypothetical protein	NA	NA	NA	NA
WP_096388380.1\|114855_116088_-	hypothetical protein	NA	NA	NA	NA
WP_096388382.1\|116575_117097_-	NADAR family protein	A0A141ZK81	Faustovirus	4.6e-23	40.5
WP_096379552.1\|118793_120149_-\|transposase	IS701 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_AP017375

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_AP017376

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection