CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_AP014863	Pseudomonas furukawaii strain KF707 plasmid pKF707, complete sequence	0 crisprs	NA	0	0	0	0
NZ_AP014862	Pseudomonas furukawaii strain KF707	11 crisprs	RT,csa3,DEDDh,DinG,cas3	2	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_AP014862_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP014862_1

940976-941069

Orphan

Consensus_repeat	Method
AGGAGCCGGCTTGCCGGCGAATG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP014862_1

>merge|NZ_AP014862|1|940976-941069|CRISPRCasFinder
AGGAGCCGGCTTGCCGGCGAATGGCCTGGGGTTGTTTCGCGAGCGAGCTCGCTCCTGCGGGCGCGCGGTGCAGGAGCCGGCTTGCCGGCGAATG

>NZ_AP014862|1|1|940976-941069|CRISPRCasFinder
AGGAGCCGGCTTGCCGGCGAATG	GCCTGGGGTTGTTTCGCGAGCGAGCTCGCTCCTGCGGGCGCGCGGTGC
AGGAGCCGGCTTGCCGGCGAATG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014862.1\|WP_004420124.1\|941110_942448_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_AP014862.1\|WP_004420116.1\|947336_948308_+\|23S-rRNA-pseudouridine(1911/1915/1917)-synthase-RluD	unknown	unknown	gnl\|CDD\|183020
NZ_AP014862.1\|WP_004420113.1\|949259_951824_+\|ATP-dependent-chaperone-ClpB	unknown	unknown	gnl\|CDD\|274529
NZ_AP014862.1\|WP_004420122.1\|942450_944052_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|236901
NZ_AP014862.1\|WP_004420135.1\|929834_930107_+\|BrnT-family-toxin	unknown	unknown	gnl\|CDD\|367913
NZ_AP014862.1\|WP_100244169.1\|937178_938126_-\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|227301
NZ_AP014862.1\|WP_004420134.1\|930087_930327_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372110
NZ_AP014862.1\|WP_036991269.1\|939275_939809_-\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|227305
NZ_AP014862.1\|WP_081608027.1\|944041_944284_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|181875
NZ_AP014862.1\|WP_004420133.1\|930430_931375_+\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	unknown	unknown	gnl\|CDD\|234893
NZ_AP014862.1\|WP_004420115.1\|948304_949030_+\|peptidoglycan-editing-factor-PgeF	unknown	unknown	gnl\|CDD\|182677
NZ_AP014862.1\|WP_004420131.1\|931871_936677_-\|type-IV-fimbrial-biogenesis-protein-PilY	unknown	unknown	gnl\|CDD\|225953
NZ_AP014862.1\|WP_004420132.1\|931431_931863_-\|type-IV-pilin-protein	unknown	unknown	gnl\|CDD\|227303
NZ_AP014862.1\|WP_004420117.1\|946169_947189_-\|outer-membrane-protein-assembly-factor-BamD	unknown	unknown	gnl\|CDD\|274513
NZ_AP014862.1\|WP_036991271.1\|938700_939195_-\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|227305
NZ_AP014862.1\|WP_004420128.1\|938122_938710_-\|type-IV-pilus-modification-protein-PilV	unknown	unknown	gnl\|CDD\|131575
NZ_AP014862.1\|WP_036991266.1\|952419_954732_-\|DUF1631-domain-containing-protein	unknown	unknown	gnl\|CDD\|377917
NZ_AP014862.1\|WP_004420111.1\|952057_952399_-\|PilZ-domain-containing-protein	unknown	unknown	gnl\|CDD\|377796
NZ_AP014862.1\|WP_004420118.1\|944433_946065_+\|NAD+-synthase	unknown	unknown	gnl\|CDD\|237577
NZ_AP014862.1\|WP_051050677.1\|936699_937182_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227070

Protein	Function_ID	Function_description	E-value
NZ_AP014862.1\|WP_004420124.1\|941110_942448_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	0
NZ_AP014862.1\|WP_004420116.1\|947336_948308_+\|23S-rRNA-pseudouridine(1911/1915/1917)-synthase-RluD	gnl\|CDD\|183020	PRK11180, rluD, 23S rRNA pseudouridine(1911/1915/1917) synthase RluD.	1.45225e-164
NZ_AP014862.1\|WP_004420113.1\|949259_951824_+\|ATP-dependent-chaperone-ClpB	gnl\|CDD\|274529	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. [Protein fate, Protein folding and stabilization].	0
NZ_AP014862.1\|WP_004420122.1\|942450_944052_-\|PAS-domain-containing-protein	gnl\|CDD\|236901	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS.	1.62966e-42
NZ_AP014862.1\|WP_004420135.1\|929834_930107_+\|BrnT-family-toxin	gnl\|CDD\|367913	pfam04365, BrnT_toxin, Ribonuclease toxin, BrnT, of type II toxin-antitoxin system. BrnT is a ribonuclease toxin of a type II toxin-antitoxin system that exhibits a RelE-like fold. The antitoxin that neutralizes this toxin is pfam14384. BrnT is found in bacteria, archaea, bacteriophage, and plasmids. BrnT-BrnA forms a 2:2 tetrameric complex and autoregulates its own expression, which is induced by a number of different environmental stresses. Expression of BrnT alone results in cessation of bacterial growth which can be rescued after subsequent expression of BrnA.	7.63901e-25
NZ_AP014862.1\|WP_100244169.1\|937178_938126_-\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	gnl\|CDD\|227301	COG4966, PilW, Tfp pilus assembly protein PilW [Cell motility and secretion / Intracellular trafficking and secretion].	2.63113e-15
NZ_AP014862.1\|WP_004420134.1\|930087_930327_+\|hypothetical-protein	gnl\|CDD\|372110	pfam12441, CopG_antitoxin, CopG antitoxin of type II toxin-antitoxin system. CopG antitoxin is a member of a type II toxin-antitoxin system family found in bacteria and archaea. Most antitoxins encoded by the relBE and parDE loci belong to the MetJ/Arc/CopG family of dimeric proteins which bind DNA through N-terminal ribbon-helix-helix (RHH) motifs. The toxin for CopG proteins falls into the family BrnT_toxin, pfam04365.	0.00402954
NZ_AP014862.1\|WP_036991269.1\|939275_939809_-\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	gnl\|CDD\|227305	COG4970, FimT, Tfp pilus assembly protein FimT [Cell motility and secretion / Intracellular trafficking and secretion].	3.02629e-21
NZ_AP014862.1\|WP_081608027.1\|944041_944284_-\|hypothetical-protein	gnl\|CDD\|181875	PRK09459, pspG, envelope stress response protein PspG.	5.39906e-06
NZ_AP014862.1\|WP_004420133.1\|930430_931375_+\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	gnl\|CDD\|234893	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed.	0
NZ_AP014862.1\|WP_004420115.1\|948304_949030_+\|peptidoglycan-editing-factor-PgeF	gnl\|CDD\|182677	PRK10723, PRK10723, polyphenol oxidase.	9.79504e-115
NZ_AP014862.1\|WP_004420131.1\|931871_936677_-\|type-IV-fimbrial-biogenesis-protein-PilY	gnl\|CDD\|225953	COG3419, PilY1, Tfp pilus assembly protein, tip-associated adhesin PilY1 [Cell motility and secretion / Intracellular trafficking and secretion].	3.6581e-24
NZ_AP014862.1\|WP_004420132.1\|931431_931863_-\|type-IV-pilin-protein	gnl\|CDD\|227303	COG4968, PilE, Tfp pilus assembly protein PilE [Cell motility and secretion / Intracellular trafficking and secretion].	9.93277e-32
NZ_AP014862.1\|WP_004420117.1\|946169_947189_-\|outer-membrane-protein-assembly-factor-BamD	gnl\|CDD\|274513	TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking].	3.613e-97
NZ_AP014862.1\|WP_036991271.1\|938700_939195_-\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	gnl\|CDD\|227305	COG4970, FimT, Tfp pilus assembly protein FimT [Cell motility and secretion / Intracellular trafficking and secretion].	2.79336e-25
NZ_AP014862.1\|WP_004420128.1\|938122_938710_-\|type-IV-pilus-modification-protein-PilV	gnl\|CDD\|131575	TIGR02523, probable_type-4_fimbrial_biogenesis_protein, type IV pilus modification protein PilV. Pilus systems categorized as type IV pilins differ greatly from one another, with some showing greater similarty to type II or type III secretion systems than to each other. Members of this protein family represent the PilV protein of type IV pilus systems as found in Pseudomonas aeruginosa PAO1, Pseudomonas syringae DC3000, Neisseria meningitidis MC58, Xylella fastidiosa 9a5c, etc. [Cell envelope, Surface structures, Protein fate, Protein modification and repair].	2.25826e-23
NZ_AP014862.1\|WP_036991266.1\|952419_954732_-\|DUF1631-domain-containing-protein	gnl\|CDD\|377917	pfam07793, DUF1631, Protein of unknown function (DUF1631). The members of this family are sequences derived from a group of hypothetical proteins expressed by certain bacterial species. The region concerned is approximately 440 amino acid residues in length.	0
NZ_AP014862.1\|WP_004420111.1\|952057_952399_-\|PilZ-domain-containing-protein	gnl\|CDD\|377796	pfam07238, PilZ, PilZ domain. PilZ is a c-di-GMP binding domain which is found C terminal to pfam07317. Proteins which contain PilZ are known to interact with the flagellar switch-complex proteins FliG and FliM. This interaction results in a reduction of torque generation and induces CCW motor bias. This domain forms a beta barrel structure.	0.000670556
NZ_AP014862.1\|WP_004420118.1\|944433_946065_+\|NAD+-synthase	gnl\|CDD\|237577	PRK13981, PRK13981, NAD synthetase; Provisional.	0
NZ_AP014862.1\|WP_051050677.1\|936699_937182_-\|hypothetical-protein	gnl\|CDD\|227070	COG4726, PilX, Tfp pilus assembly protein PilX [Cell motility and secretion / Intracellular trafficking and secretion].	1.38925e-11

>NZ_AP014862.1|WP_036991269.1|939275_939809_-|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein
MTRPLGYSLVELLFVLLIAGILLSLATPALVSTVQDSRETQAVNQLLGALHYARGTAVMERKVVGICGGRSACNRSNHWHGQLMVYEDSPGGGGPASDDSLLRVTPLPGDLYVHWRGFRPSHSVIYKPDGTVAGTNGTLTLCRDGIAVRALVINVSGRVRTRTPSDDDRCNLSATRR
>NZ_AP014862.1|WP_036991271.1|938700_939195_-|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein
MYSRKGFSLIELMVVIAIVAIMASIGYPSFSTLIMNNRITSQTNALLGVLQLARSEAVTQRKAMTVCPSSNQSTCAAPNNNRWANGLVIRNADVGVVRVLSLSADTPVLGSGTASVVFATDGTSAGGTLRVCDSRGDADSRTILINAAGQSRSRAFQAGDLACP
>NZ_AP014862.1|WP_004420128.1|938122_938710_-|type-IV-pilus-modification-protein-PilV
MPMTSHRASGFTLIEVLIALLILAIGLLGMVSLMMTSLQSNQNAYQRGQASLIAYDMADRLRLNRTLATTANDYVFLLNTSVPSDPGCRTTGCTAANIADLDLREWQENFRDVNGTGVDGNDYVAALPNGAGTVQRSGRSYLITVSWVPSVNSKEVEEETFACNGVIDGDTNTVVAGEPDSAANARCFFQLRVDL
>NZ_AP014862.1|WP_100244169.1|937178_938126_-|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein
MRNAVMESRHHSSGFSLIELMVTILLSSLLLLGVLQLFNDASSSDRANSALSRLQESGRIALDVIKRDIRRTGYQGCASSSIASRTGSSLIFPRDAFGTRNETAVNGGVIEGVGTGSDTLTIRYASPTPITVSAIGGTSLTLASPMSFSTDQTFLLTDCLNVVIFKPNAAGENATTLTTANSNFSGVMLGARLYRVVQSTYAICASGRGLCRNNHDGAGAQELIADAENFQVLYGIRNGGQTRWITATDLSSTLREQVSQVKLSLVISSPDNASSGASSQQFAIANLGDNSTLAAVNDQRIRRAFTTAIELRNRQ
>NZ_AP014862.1|WP_051050677.1|936699_937182_-|hypothetical-protein
MSVMPRYAQRGAVLLVSLVLLLILTTLAVTAASTSALQERMSSNAQQSNTAFQAAENGLANTIAQITPSSAPPSDQTYLYCKNVSGEACAAGAGDMAARARVAVAARVEDGYSIREGSGTPMVMTYDISSSASLDTSNATITGSNTNALHRQGYMTVEIR
>NZ_AP014862.1|WP_004420131.1|931871_936677_-|type-IV-fimbrial-biogenesis-protein-PilY
MNKKLDTSRRFAVSLMAGLLLFSGANSYADDTEIFFGGPAIDSGIRPNVLFVLDNSGSMNWRLNSNNTATGTQKSRMDVLKESFADIMNNTRDINVGVMVLNGRSEYGDSRFVYPVTYIDQSLPGNADLVATTPGIRASTDDATQGNASNNNRAVVTDPTLVMGTISSLQDIEGSAGTSVLTTTGAFYRVNVSGTEYACRLNPPSRNNPIRCTNTLKNDLNLRRSAPEEPLFNFQGLNVPGTATISEAYIEVTPTNTPGNSGRRNPVFSVQVERSKAPAALNDNNTLGTRSYLNSDTTQAFGWISGNRVRMDITGLIQTLRTATPATNPTNSPITGVFVRLTPTTNNNNNQDYTFCVEGCAAGNAPTLVIRYTSQGYAPEQRMGALRFQDVGIPQGATITEARISFVPAATTEAPFPTFQVKAERTGNASSFTTGEDLTSRSTTTATTSWSPTNWPLQATPAPIQGPDVTAQVQEVVGLSGWCGNNAMAFYLTPTSTVGAISASSFDGAGGLQPTLTVSYTGGTGGCFNSIVEARITEEKNDGHQNNSGTVTLAGQTLPMTTREIGARFDNLPINPGAEIMEAKVLITPAATVNNPSLTSQISFQNSNTPSAFTTGNNNFSNRSSRTSEVQCQINSTTGWVTGQPVVCDIGGLASSLTSLFSVSNSWTRGNALNMFIRHTSTSSLTAVAYETNPSQSIKLRLKIRNGGLSNTVRSHVNALVQNMYAEDGTPIVPTLYDSARYMRGSISGRDSPINSTCQANHIVLLTDGQANNNTTSAVNGITSIIGESCTSADSGELCARDLAKFLAENDQSSSIEGTNTITTHTVGFALDASGATASAGIKRFLAEVATNGGGGSYTAESASELSSAFNRIIQEVLATDTTFVSPGATVNQFNRQTNRNEIYFALFKPSETDRWIGNLKRYKLTNTTGSEVLDADDVPAIDQATGFFKASARSFWTASADGSNTALGGVAANLPANASRKLFTYFGNSPTSGAVTLDVPAHRIDTANTTNLTESVLGATDTTERSQLINWIRGTNTDGTVRNSVGDPLHSVPRLLTYQCNTFSNTALTACSSEDQTAFVGTNEGLVHAFNTATGEEQFAFMPAELLPNIKPLMVNAKSTSVKPRVYGMDNSVVLWANDLNGNGVIYGGRDPSSTDTPRLLTGLNTGEFVYAYATMGRGGRSLYALDVTDRASPKMLWFIKGGETPGFERLGQTWSTPVLTTVDIGGTATKVLIFGGGYDTNQDNVRARTADGMGNAIYIVNATTGALIWSASGAATGHTLRLNKMQYSIPAPIRVIDIDRNGKADQFFVGDMGGQVWRFFINNGSAASSLVSPVNGNGSGAPDADDGVFADVIGADTGTETATQLEQKLRRFYNEPDVALLNINGTRTLAINIGSGYRGHPLNAVTQDRFYSFRTPLVYNPTTDAANNHTTLVESNLYDATDNLIQEGSATQQTAAATAFARTSGGWYIRLEGRGEKVLSESATFAGLLVFTTYEPTASLNSCRAAQGISRAYTVNLFDATPAAENVSGTPDKADRATLLKTAGIPPKPVFLLPDNGSGNDGDGSGGGKDNGPWVLCIGTVCKTIKGPYQESTYWIDDN
>NZ_AP014862.1|WP_004420132.1|931431_931863_-|type-IV-pilin-protein
MRRGMHGFTLIELMIAVVVVAILASIAYPSYQGYLRRNACEAAKASLTGLANAMERFRAQQGTYVGAATDGVPNIYATQSPEQGTAQFNLVVGNATATTFSISATPVQGGLWGGAANTLTLTSTGVRSGGASLVNAWDRCPSN
>NZ_AP014862.1|WP_004420133.1|930430_931375_+|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase
MQIKLANPRGFCAGVDRAIEIVNRALEVFGPPIYVRHEVVHNKFVVEDLRARGAVFVEELDQVPDNVIVIFSAHGVSQAVRQEAARRGLKVFDATCPLVTKVHMEVARYSRDGRECVLIGHAGHPEVEGTMGQYDPANGGAIYLVEDEADVARLVVRNPDALSFVTQTTLSMDDTSRVIDALRARFPSIGGPRKDDICYATQNRQDAVKQLASESDVVLVVGSPNSSNSNRLRELAERLDTPAYLIDGAEDLKREWFDQAGRVGITAGASAPEVLVQGVIDQLRAWGAEVAVELDGRPENITFSMPKELRVKAI
>NZ_AP014862.1|WP_004420134.1|930087_930327_+|hypothetical-protein
MKAVEFDRLFDEEEGDVLEHLDLAQAKRSGHEQKRVNVDFPVWMIESLDREASRLGVTRQSIIKIWLAERLEQVTHRQS
>NZ_AP014862.1|WP_004420135.1|929834_930107_+|BrnT-family-toxin
MLRFEYDEAKSLANRVKHGIDFMTAQQLWNDPDLLEIPARTLDEPRYLVIARLLDRCWSAVITYRHGRIRIISVRRSRVEEVSLYESSGI
>NZ_AP014862.1|WP_004420124.1|941110_942448_-|sigma-54-dependent-Fis-family-transcriptional-regulator
MTRQRALIVDDEPDIRELLEITLGRMKLDTRSARNLKEARDWLAREAFDLCLTDMRLPDGTGLELVQHIQQRHPLVPVAMITAYGSLDTAVNALKAGAFDFVTKPVDLGRLRELVNTALRLSTPDGEEPPVDGRLLGQSPPMTALRKQIQKLARSQAPVYISGESGSGKELVARLIHEQGPRAERPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKQGLFQAANGGTLFLDEVADLPLPMQVKLLRAIQEKAVRAVGGQQEVVVDVRILSATHKDLAAEVAAGRFRQDLYYRLNVIELSVPPLRERREDIPLLAEAMLKRLAQQSGLPAATLAPEALDKLKCYRFPGNVRELENMLERAYTLCEDDQIQARDLRLAEASGVAEAGEASLAQIDNLEDYLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID
>NZ_AP014862.1|WP_004420122.1|942450_944052_-|PAS-domain-containing-protein
MNAETLPAPSELSAQGRRIFRLYSLYRLLIGLTLVGLISSELDDQFMELARPELFRNAAWFYLIINSLIAVAVPRPRHMVQVFSLALVDVLILSCLFYAGGGTPSGVANLIVVSVAISNILLRGRIGLLVAAVATLALIYLTFYLSLSHPRANTQFVQAGGFGALCFAAALFLQGLSRRLQLSETLAEQRAADVASLEALNAQILERMRTGILVLDPRNRILLANNGALALLGRDELQGRNLAVQCPALLGSLEQWLANPTLRPQSLQAFADGPTLQPSFVPLPRGDQQNTLVFLDDISQIAQQAQQLKLASLGRLTAGIAHEIRNPLGAISHAAQLLQESEELDGPDRRLAQIIQDHSRRMNLVIENVLQLSRRRQSEPQLLDLKYWLTRFASEFRGSAAPGQTLHLHTLGSTLQTRMDPHQLTQVLTNLVQNGLRYSARKHGQGQVWLRLFRDPESDLPVLEVEDDGEGVPPEQVHNIFEPFFTTENKGTGLGLYLSRELCESNQARLDYKPREAGGSCFRITFAHPRKLS
>NZ_AP014862.1|WP_081608027.1|944041_944284_-|hypothetical-protein
MGMFRLLFWIAVIFAAIWLWRRFKTPSTPRQQPRREDEGHPMVRCAHCGVHLPRSHALTQDDRWYCSQAHLEQDRSSGER
>NZ_AP014862.1|WP_004420118.1|944433_946065_+|NAD+-synthase
MRHSLRIVMAQLNLRVGDVQGNTQRVIEEANAARDSWAADVIVFPELTLCGYPPEDLLLRSSMQRRIEQGLQRLRDEVRGIYLVVGYPWLEAERRFNACAVIADGELLATYYKQRLPNYRVFDERRYFDPGDQPCVVDIKGVPVGLSICEDIWSPGPLAQARAAGARLMISLNASPFHLDKQLEREEMLAERARETGVPVIYVNQVGGQDELVFDGGSCVVDAEGRVCQRAAGFVEGLFPVDLHRQEGRWVPRQTHCAELPELEASVYQALVVGVRDYVGKNGFKGVVLGVSGGIDSALSLAVAVDALGPERVEAVMMPYHYTAQVSLEDAEAEARLLGVAYRVLPIAPMVEAFQQVLAPAFGGLPRDATEENLQARCRGTLLMAISNKKGSLVLTTGNKSEMAVGYATLYGDMAGGFDVLKDVPKTLVFRLAEYRNRLGQVIPARVIERPPSAELSPDQRDEDSLPPYPVLDEVLKLYIEHDLSANAIIAEGFDEDLVNRVLAMVDRNEYKRRQAAVGVRVTQRGFGRDRRYPITSGWRLGD
>NZ_AP014862.1|WP_004420117.1|946169_947189_-|outer-membrane-protein-assembly-factor-BamD
MQVKHLLLIATLALTAACSSNKEVVDENLSEAELYQQAQADLDNSSYTPAIAKLKALESRYPFGRYAEQAQLELIYAYYKNVEPEAAKSAAERFIRLHPQHPNVDYAYYLKGLASFDQDRGLLARFLPLDMTKRDPGAARDSYNEFAQLTSRFPNSRYAPDAKQRMVYLRNLLAAYEIHVAHYYLTRQAYVAAGNRGRYVVENFQETPAVGDGLAVMVESYQRLGLNELAATSLETLKLNYPDHPSLVDGQFVPREEEADNRTWLAKATLGLIESDAPLPPGETRAAQDVIKQYEDAKEQIPEELLPENQGEVQEEAPQSETKSNDRSWFSYMTFGLFD
>NZ_AP014862.1|WP_004420116.1|947336_948308_+|23S-rRNA-pseudouridine(1911/1915/1917)-synthase-RluD
MSSINKQVIQLSAEVPSELGGQRLDQVAAQLFPEHSRSRLAGWIKEGVLTVDGSVLRPRDIVHGGALLELDAEQEAQGEWIAQDIELDIVYEDDHLLVLDKPAGLVVHPAAGHADGTLLNALLHHVPGLANVPRAGIVHRLDKDTTGLMVVAKTLEAHTSLVAQLQARSVSRIYEAVVVGVITAGGKIDAPIGRHGQQRQRMAVVAGGKPAVTHYRVLERFRSHTHTRVKLETGRTHQIRVHMAYVNFPLVGDPVYAGRFRIPPAASQTLVQTLKDFPRQALHARFLELDHPATGERMKWESPLPDDFVWLLTLLRQDHESFE
>NZ_AP014862.1|WP_004420115.1|948304_949030_+|peptidoglycan-editing-factor-PgeF
MSHWLKPDWPAPARVRACVTTREGGFSLPPYEGLNLGSHVGDDPLAVERNRQALTDALGCRPAWLSQVHGVQVVEANPSRVDEADGSWTATPGVAASVLTADCLPALFCDRAGTRVAAAHAGWRGLANGVLEATLDALTLAPEEVLVWLGPAIGPEAFEVGPEVREAFIAQHPQAASAFRPSLNAGKFMADIYQLARIRLAARGVTAVHGGGFCTVGDPRFYSYRRAARTGRFASLVWLAD
>NZ_AP014862.1|WP_004420113.1|949259_951824_+|ATP-dependent-chaperone-ClpB
MRIDRLTSKLQLALSDAQSLAVGHDHPAIEPLHLVLALLDQQGGSIRPLLMQVGFDVQALRQGLTRELDQLPKIQNPTGDVNLSQDLARLLNQADRLSQQKGDQFISSELVMLAAMDEGTRLGKLLLGQGVTRKALENAIANLRGGQAVNDPNVEESRQALDKFTVDLTKRAEDGKLDPVIGRDDEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIAEGLAQRIVNGEVPDGLKDKRLLALDMGALIAGAKFRGEFEERLKGVLNELSKQEGRVILFIDELHTMVGAGKAEGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVLVDEPSEEDTIAILRGLKERYEVHHGVTITDGAIIAAAKLSHRYITDRQLPDKAIDLIDEAASRIRMEIDSKPEALDRLDRRLIQLKIEREALKKEEDEATKKRLAKLEEDILKLEREYADLEEIWKSEKAEVQGSAQIQQKIEQARQDMEAARRKGDLQRMAELQYGVIPDLERSLQMVDQHGKTENQLLRNKVTDEEIAEVVSKWTGIPVAKMMEGEREKLLRMEDELHKRVIGQHEAVVAVANAVRRSRAGLADPNRPSGSFLFLGPTGVGKTELCKALAEFLFDTEEALVRVDMSEFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRRKPYSVVLMDEVEKAHPDVFNILLQVLEDGRLTDSHGRTVDFRNTVVVMTSNLGSTQIQELVGDREAQRAAVMDAVGNHFRPEFINRIDEVVVFEPLGRDQIGGIAEIQLQRLRKRLVERELSLELSPEALDKLIAVGYDPVYGARPLKRAIQRWIENPLAQQILAGKFGPGAGIKAKVEGDEIVFD
>NZ_AP014862.1|WP_004420111.1|952057_952399_-|PilZ-domain-containing-protein
MDERRQRNRHATELQIEVFDVHSGQCLGRIVDLSMEGFMLLSELPLEADSVWECRLVPLTWVEGLEEIRLGADCLWTRTGEDTRKRWAGFHIIDIAEDQAIALEELLQFVRVG
>NZ_AP014862.1|WP_036991266.1|952419_954732_-|DUF1631-domain-containing-protein
MSNQDRPPTPPGTVTTLASRGIQPRFGELVQSCRKLVMNRLAETLTAVFAQVDDTLFDCAEKAENNQVQTLFFDSMRDIRKQRPQIERLYHQRIASGFEDFLGGKLKPDIDAAQLDADHLQLMGNEEYEESLLVTNMVSRVKARCAQPLFALDQRLAVLNGGRKLGDDDNPFGPQAVALAFKEALQPSPFPLRIKTILYMLFDQHVMQCLDGVYDALNQRLVQAGVLPNLKYSVQRSTSVPHHPGTPRKPGSEGAAAQAPGAHGSGSASGSPLDLSGLPPADPGQLFNGLAALLGERRLHHGNAPLPGGTPSIASFAPRGATRTYSAAELLEALNRLQQQSAQDLASKLRQPQRVDGLKADLQEQLESHSRLPGQQKLSDYEADVIDLVGMLFDFILDDDNLADVYKTALSHLHTPYLKVALQDKALFTQHHHPARRLLNSMAQAGVLYAGEGEERGLLAKIHWVVERVVHGFSGDLLLFDSLLDEFNEFVGTLRHKVELREQRAVEAAKGRDKLLGARQQAVDIVARVLQGKELPGIIHNFLELTWTDVLVFVLLRHGERSTEWQRSVEVAEQLAWSGTPLDAGGRARLQDLRISMLEDLRKGLELLGGYHEDGIRRLLQDLVACQHAVQSQQPQLAERIESPLPESKLGEMLGEDAGLASTPRPVTLSARAQALIRELARVEFGTWFEFIDGPDVRVFKLSWYSPTTRNYMFVDHSGQRAAIMPLTQLALDMEQGLVRLVPPERNAPLMDRALGAIYRVLQRFTGRTA

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Crispr_ID: NZ_AP014862_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP014862_2

1930247-1930353

Orphan

Consensus_repeat	Method
ATTCGCCGGCAAGCCGGCTCCTACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP014862_2

>merge|NZ_AP014862|2|1930247-1930353|CRISPRCasFinder
ATTCGCCGGCAAGCCGGCTCCTACGAAGCCGAACTCGCACCTACCCTGTAGGAGCGAGCTTGCTCGCGAACGGCTCAGCATCATCCGCCGGCAAGCCGGCTCCTACG

>NZ_AP014862|2|2|1930247-1930353|CRISPRCasFinder
ATTCGCCGGCAAGCCGGCTCCTACG	AAGCCGAACTCGCACCTACCCTGTAGGAGCGAGCTTGCTCGCGAACGGCTCAGCATC
ATCCGCCGGCAAGCCGGCTCCTACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014862.1\|WP_003456482.1\|1917951_1918671_+\|response-regulator	unknown	unknown	gnl\|CDD\|182711
NZ_AP014862.1\|WP_003456500.1\|1931800_1932739_+\|P-hydroxyphenylacetate-hydroxylase-C1:reductase-component	unknown	unknown	gnl\|CDD\|214900
NZ_AP014862.1\|WP_003456499.1\|1930544_1931714_+\|flavin-dependent-monooxygenase	unknown	unknown	gnl\|CDD\|173848
NZ_AP014862.1\|WP_100244224.1\|1918694_1919444_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270422
NZ_AP014862.1\|WP_003456495.1\|1925621_1927712_+\|acetate--CoA-ligase-family-protein	unknown	unknown	gnl\|CDD\|223972
NZ_AP014862.1\|WP_003456480.1\|1917212_1917863_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|132427
NZ_AP014862.1\|WP_003456505.1\|1937252_1938866_-\|FMN-binding-glutamate-synthase-family-protein	unknown	unknown	gnl\|CDD\|239202
NZ_AP014862.1\|WP_003456506.1\|1939083_1939785_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223487
NZ_AP014862.1\|WP_003456489.1\|1921840_1923337_+\|Na+/H+-antiporter-NhaC	unknown	unknown	gnl\|CDD\|188097
NZ_AP014862.1\|WP_003456491.1\|1923630_1924422_+\|enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|235852
NZ_AP014862.1\|WP_003456497.1\|1927824_1929435_+\|5-guanidino-2-oxopentanoate-decarboxylase	unknown	unknown	gnl\|CDD\|236041
NZ_AP014862.1\|WP_003456498.1\|1929506_1930217_+\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225158
NZ_AP014862.1\|WP_003456511.1\|1940552_1941809_-\|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivM	unknown	unknown	gnl\|CDD\|236896
NZ_AP014862.1\|WP_003456487.1\|1919443_1921714_+\|response-regulator	unknown	unknown	gnl\|CDD\|274362
NZ_AP014862.1\|WP_003456507.1\|1939788_1940556_-\|high-affinity-branched-chain-amino-acid-ABC-transporter-ATP-binding-protein-LivG	unknown	unknown	gnl\|CDD\|183080
NZ_AP014862.1\|WP_003456513.1\|1941805_1942729_-\|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivH	unknown	unknown	gnl\|CDD\|182689
NZ_AP014862.1\|WP_036994068.1\|1924447_1925608_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173847
NZ_AP014862.1\|WP_003456501.1\|1932800_1934501_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_AP014862.1\|WP_003456504.1\|1935725_1937189_+\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143428
NZ_AP014862.1\|WP_036994072.1\|1934686_1935577_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182990

Protein	Function_ID	Function_description	E-value
NZ_AP014862.1\|WP_003456482.1\|1917951_1918671_+\|response-regulator	gnl\|CDD\|182711	PRK10766, PRK10766, two-component system response regulator TorR.	1.64077e-79
NZ_AP014862.1\|WP_003456500.1\|1931800_1932739_+\|P-hydroxyphenylacetate-hydroxylase-C1:reductase-component	gnl\|CDD\|214900	smart00903, Flavin_Reduct, Flavin reductase like domain. This entry represents the FMN-binding domain found in NAD(P)H-flavin oxidoreductases (flavin reductases), a class of enzymes capable of producing reduced flavin for bacterial bioluminescence and other biological processes. This domain is also found in various other oxidoreductase and monooxygenase enzymes... This domain consists of a beta-barrel with Greek key topology, and is related to the ferredoxin reductase-like FAD-binding domain. The flavin reductases have a different dimerisation mode than that found in the PNP oxidase-like family, which also carries an FMN-binding domain with a similar topology.	8.66504e-63
NZ_AP014862.1\|WP_003456499.1\|1930544_1931714_+\|flavin-dependent-monooxygenase	gnl\|CDD\|173848	cd01159, NcnH, Naphthocyclinone hydroxylase. Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.	2.51361e-147
NZ_AP014862.1\|WP_100244224.1\|1918694_1919444_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270422	cd13704, PBP2_HisK, The periplasmic sensor domain of histidine kinase receptors; the type 2 periplasmic binding fold protein. This subfamily includes the periplasmic sensor domain of the histidine kinase receptors (HisK) which are elements of the two-component signal transduction systems commonly found in bacteria and lower eukaryotes. Typically, the two-component system consists of a membrane-spanning histidine kinase sensor and a cytoplasmic response regulator. The two-component systems serve as a stimulus-response coupling mechanism to enable microorganisms to sense and respond to changes in environmental conditions. Extracellular stimuli such as small molecule ligands and ions are detected by the N-terminal periplasmic sensing domain of the sensor kinase receptor, which regulate the catalytic activity of the cytoplasmic kinase domain and promote ATP-dependent autophosphorylation of a conserved histidine residue. The phosphate is then transferred to a conserved aspartate in the response regulator through a phospho-transfer mechanism, and the activity of the response regulator is in turn regulated. The sensor domain belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space through their function as an initial high-affinity binding component. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.4664e-22
NZ_AP014862.1\|WP_003456495.1\|1925621_1927712_+\|acetate--CoA-ligase-family-protein	gnl\|CDD\|223972	COG1042, COG1042, Acyl-CoA synthetase (NDP forming) [Energy production and conversion].	4.76165e-143
NZ_AP014862.1\|WP_003456480.1\|1917212_1917863_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|132427	TIGR03384, betaine_BetI, transcriptional repressor BetI. BetI is a DNA-binding transcriptional repressor of the bet (betaine) regulon. In sequence, it is related to TetR (pfam00440). Choline, through BetI, induces the expression of the betaine biosynthesis genes betA and betB by derepression. The choline porter gene betT is also part of this regulon in Escherichia coli. Note that a different transcriptional regulator, ArcA, controls the expression of bet regulon genes in response to oxygen, as BetA is an oxygen-dependent enzyme. [Regulatory functions, DNA interactions].	2.63679e-31
NZ_AP014862.1\|WP_003456505.1\|1937252_1938866_-\|FMN-binding-glutamate-synthase-family-protein	gnl\|CDD\|239202	cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.	6.68386e-179
NZ_AP014862.1\|WP_003456506.1\|1939083_1939785_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223487	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism].	1.1695e-129
NZ_AP014862.1\|WP_003456489.1\|1921840_1923337_+\|Na+/H+-antiporter-NhaC	gnl\|CDD\|188097	TIGR00931, Uncharacterized_Na+/H+_antiporter_HI_1107, Na+/H+ antiporter NhaC. A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterized.It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria. Intriguingly, archaeal homolog ArcD (just outside boundaries of family) has been identified as an arginine/ornithine antiporter. [Transport and binding proteins, Cations and iron carrying compounds].	1.91845e-120
NZ_AP014862.1\|WP_003456491.1\|1923630_1924422_+\|enoyl-CoA-hydratase	gnl\|CDD\|235852	PRK06688, PRK06688, enoyl-CoA hydratase; Provisional.	2.96566e-74
NZ_AP014862.1\|WP_003456497.1\|1927824_1929435_+\|5-guanidino-2-oxopentanoate-decarboxylase	gnl\|CDD\|236041	PRK07524, PRK07524, 5-guanidino-2-oxopentanoate decarboxylase.	0
NZ_AP014862.1\|WP_003456498.1\|1929506_1930217_+\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|225158	COG2249, MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only].	8.52093e-61
NZ_AP014862.1\|WP_003456511.1\|1940552_1941809_-\|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivM	gnl\|CDD\|236896	PRK11301, livM, leucine/isoleucine/valine transporter permease subunit; Provisional.	0
NZ_AP014862.1\|WP_003456487.1\|1919443_1921714_+\|response-regulator	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	5.98471e-104
NZ_AP014862.1\|WP_003456507.1\|1939788_1940556_-\|high-affinity-branched-chain-amino-acid-ABC-transporter-ATP-binding-protein-LivG	gnl\|CDD\|183080	PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional.	0
NZ_AP014862.1\|WP_003456513.1\|1941805_1942729_-\|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivH	gnl\|CDD\|182689	PRK10740, PRK10740, high-affinity branched-chain amino acid ABC transporter permease LivH.	9.83893e-135
NZ_AP014862.1\|WP_036994068.1\|1924447_1925608_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|173847	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.	8.36974e-133
NZ_AP014862.1\|WP_003456501.1\|1932800_1934501_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	1.35961e-75
NZ_AP014862.1\|WP_003456504.1\|1935725_1937189_+\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143428	cd07110, ALDH_F10_BADH, Arabidopsis betaine aldehyde dehydrogenase 1 and 2, ALDH family 10A8 and 10A9-like. Present in this CD are the Arabidopsis betaine aldehyde dehydrogenase (BADH) 1 (chloroplast) and 2 (mitochondria), also known as, aldehyde dehydrogenase family 10 member A8 and aldehyde dehydrogenase family 10 member A9, respectively, and are putative dehydration- and salt-inducible BADHs (EC 1.2.1.8) that catalyze the oxidation of betaine aldehyde to the compatible solute glycine betaine.	0
NZ_AP014862.1\|WP_036994072.1\|1934686_1935577_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	6.6016e-85

>NZ_AP014862.1|WP_003456498.1|1929506_1930217_+|NAD(P)H-dependent-oxidoreductase
MNVLIVHAHPEPQSFTTALRDLAVETLQGLGHQVQQSDLYAMNWNPVASAADFTERANPEYLVYALEQREGVKSDRLAADIRGELDKLLWADLLILNFPLYWFSVPAILKGWIDRVLVSGICYGGKRFYDQGGLAGKKALVSLTLGGREHMFGEGAIHGPLEDMLRPLLRGTLAYVGLEVLPPFVAWHVPYISDAARGDFLRAYQARLQGLEQDAALEFPRLEQFDERLYPRTHPL
>NZ_AP014862.1|WP_003456497.1|1927824_1929435_+|5-guanidino-2-oxopentanoate-decarboxylase
MQQQKTLTGGQALVRLLATYGVDTLFGIPGVHTLELYRGLPGSGIRHVLTRHEQGAGFMADGYARVTGKPGVCFLITGPGVTNAATAIGQAHADSIPLLVISSVNHSASLGKGWGCLHETQDQRALTAPITAFSALALSPEDLPELVARAFAVFEGERPRPVHISVPLDVLAAPVARDWSRERMRRPGRGLPDSDALAAAAVRLASAKRPMIIAGGGALEAADALRALSDRLATPVFTSVAGKGLLPPEAPLNAGASLCVAPGWEMIAEADLVLAVGTEMADTDFWRDRLPLSGELIRIDIDPRKFNDVYPCSLALKGDARQSLEALLARLPEQGRAGQVAAARVARLREAIRTGHAPLQAIHQAILDRIAAVLPTNAFVSTDMTQLAYTGNYAFASRSPRSWLHPTGYGTLGYGLPAGIGAKLGAPDRPGLVLVGDGGFLYTAQELATATEELDSPLVVLLWNNDALGQIRDDMQALDIEPIGVLPRNPDFVGLARAFGCQVRQPGSLDELEHDLREGFSHPGVTLVELRHACAR
>NZ_AP014862.1|WP_003456495.1|1925621_1927712_+|acetate--CoA-ligase-family-protein
MNPRDNLKRLLAPRHLAFIGGRSMARALKRCAEGGFAGELWLVNPQHAELEGVPCIARVADLPCAPDAVFIATHREQTLASVAELAALGAGGAICYASGFAETGAEGAALQSELLAAAGDMALLGPNCYGLLDYLHGAALWPVAHGGRRVEKGVAVLTQSGNFAYNLSMSDRSLPVAYMASVGNQAQLGVAELMDVLLDEPRVTAIGLHLEGLRNVPGFARAAHKALEKGVPIIALKTGVSQIGAQLALSHTSSLAGSDALYDALFERLGVIRVSGPVSFMETLKAAACGTLPAGPGLIALACSGGDAGLIADYAEANGLRLPALDDRQRHALAQILPGYANVANPLDFTTAIWGDAESLRHMLDIALRSAADAALLVLDYPGEGTGERPQCDLLLELFCEALERHGKAGFIASAFPELLPAAARDRLHARGVAALQGVEDGLAAWGRIAAYRQRRDRLLERGESALVPLCPAPVSDGRTLDEWQSKQAMRAFGLPVPQGILSTPERAPGDAETLGYPLALKAVSAQLPHKTEAGGVALDLRDAEALRRALDEMRQRLAASAPGVAFERVLLERMARPPLAELIVGIKRENGFGLALVIGAGGILVELLKDSRSLLLPTNDAAIRDALLSLRSAPLLTGFRGRPAADLEALVAAIRAVADYACENAGQLLELDVNPLLVSADGAGAVDALIRLGND
>NZ_AP014862.1|WP_036994068.1|1924447_1925608_+|acyl-CoA-dehydrogenase
MNFQLTQEQEMLVDAVRAFVEKELLPHEEAVDRADAVSPELAAEIRGKALAAGFYAFNMPEEVGGGGLDYLSQALVERELSKVSWALHVFVARPSKILMACTGEQIGRYLLPVVQGEKIDCFALTEPGAGSDANAIKTRAVRDGDDFVLNGSKHFISHAGHADFAIVFAVTDSFERNGKRRNAVTAFLVDKGTPGMTVRRGPRCVSNKGYHTYELFFDDCRVPASSVLGEVDKGWEVANAWLTAGRVMVAANCVGQAQRALDLSLRWAADRKQFGQPIGSYQGVSFKLADMATQIRAAELMTLHTAWKMDQGTMTDGEAGMAKLFASEVLGRVADETVQIFGGMGLMDEGPVERIWRNARIERIWEGTSEIQRHIISRELLRPLLG
>NZ_AP014862.1|WP_003456491.1|1923630_1924422_+|enoyl-CoA-hydratase
MSTAASLLSQVDAGVARITLNRPQQRNALDIPTLRGLIELLDAHEADPGVRVVVLSGTGRSFSAGADLAEWAEAEARGQLETYGWTEMAHRLMGRLHGLSKPTLAAVNGTAVGAGMDLALCCDFRIAAQSARFKAGYTAMAYSPDAGASWHLPRLIGVEQAKRLLFLDEPWSAERALAAGLVGEVCADAELPQAVDRFAARLAVGPTFAFAQTKALIREGATRSLAEQLAAEQAAGLLCGRSEDAAEALRAVAEKRAPHFSGR
>NZ_AP014862.1|WP_003456489.1|1921840_1923337_+|Na+/H+-antiporter-NhaC
MKLRSFSALDSILVAAVLLTLIAGSLSLFDDPMSGPLQLALILVGCFGALIGIKNGLRWQELEDEIVRINAKTVAPIFIFLSIGILIGAFILSGTVPTLLHMGLSLLSPAFFYPAACLICAIVSLCIGSSWTTVATMGVGLMGTAHGFGLSPEITAGAVVAGAYFGDKMSPLSDTTNLAPAVAGAQLFDHIRHMAWVSVPSLLIALTLFSVLALNTDVSDGSVSDVEHIKAELAASFSVAWYNLIPMFALLAMSVRKVPAFPAIILSSALACVFAMLFQGAAIERFMAGSGLTGAMLVVKALWTVMATGFVSQTGHEVVDALFSRGGMASMVFMAFLVFCSMMMTAVLERIGFIRFVLGLIVRGVHSVGALIGATLATSLGVNVLTGDQYLSLVLPGQMWKEEYRRRGLAAVNLSRTLEDAGTVTSALIPWNACGVYMAATLGVATLSYLPFAFFNWINPLIALIFGIFCIRILPLEADPAERPESLPGRDEALPGTA
>NZ_AP014862.1|WP_003456487.1|1919443_1921714_+|response-regulator
MRPGSPGPLGGLSRRLLRFIVLFSLAFTLLASAVQLYFEYRREMQGIESRLEVIRSGYLESLERSLWDLNQAQLDIQLRGLADFPDIAWVRLHSDDYQLLRGRALSASSVRSERFELAFRLPDGTLRDLGTLEVASDLGAIRARLVASGLANLLWMGLFICGLAVALSGLFHRLVTRHLLAMAAFSRRLAQGERGEPFRLDKRRRGQGDELDAVAQALDDMRQAIVDDLRRREADRLALQDKRDELQRMVELRTASLHRAKEQAEAANLAKSRFLATISHELRTPLNGILGMAELLRTSQRGAEDRKRLQALHKAGEGLLATLNDLLDFAKLEEGEVAPEPVAFSLRELLDEVITLLEPRALANGTRLQGATDSAIAERFRGAEQFLRQVLTNLLANAIKFTEGGHVEVRVELLGSEPGRQRLRLSVTDDGIGIAEAVQARIFERFVQADERVARRYGGAGLGLAVCKRLLQAMGGEILLSSREGEGSRFWFDLDLECLDRQLPETQPASSAQAIRPLDVLVVEDVELNREVARGLLERDGHRVSFAVDAQPALDLCRRQRFDLILLDVHLPGMSGTELCRLLRDDPAGLDRDVPVFAFTASLEADRVQGYLDAGMQGVIGKPIRLETLRQVLAQVAATAEVTGLLQESVLEGHREHLGDARLARLLRLLLERLAIDGAALLEALRQGDAARSADLAHRLASAADALGGRALANLLRHLEADAERGFLAGYADRLQGLLERSEAAFQGALAKYESL
>NZ_AP014862.1|WP_100244224.1|1918694_1919444_+|transporter-substrate-binding-domain-containing-protein
MSLPAAASGAGEAIRYCDHPVYPPISWTDAQNRVRGVAPEAVRDVARTLGMDVEFVQLGNWTRCLMDAAQGRVDLVIAYRSPAREETLRFSRVALLREEVALFFHRDRPIRVSRLEDLARYRGGLLFGESYGQAFDRFVEAHGNVERVASNEQNFGKLARGRIDFLVHERRTGQLFLESLDGAGRIEALPQTLAVDYLYFAVSRRSPLQGRMAEIDAALQGLAERRQVERWLRESTEAYRATQARTGAR
>NZ_AP014862.1|WP_003456482.1|1917951_1918671_+|response-regulator
MAPSVLIVDDDPLIRELLQSYLEQEGYSVRCASTAEQAEACLEEHPVDLVMLDIRLPGKDGLTLTRELRVRSEVGIILITGRNDEIDRIVGLECGADDYLSKPFNPRELISRAKNLIRRVRHSQQPAGLAPAGQLRQFDDWTLDVDRRRLIAPDGGETLLTHGEFQLLSVFLRNAGHTLSRDQLMDQIRNREWLPNDRSIDVLVGRLRRKLDDDPANPRLIITIHGTGYLFGAPVSGRP
>NZ_AP014862.1|WP_003456480.1|1917212_1917863_+|TetR-family-transcriptional-regulator
MTTQDVRYSRLDPELRKARLIDATLACLKRYGFQGASIRKICAEAGVSVGLINHHYASKDELVAEAYLAITGRVMSLLRAAIDAASPSPRARLSAFFQASFSAELLEPHLLDAWLAFWGAVKTAQAINAAHEQSYAEYRRILAGVLGDLARDEGWRDFDAGLAAISLSALLDGLWLESGLNPGTFSPEQGIRICEAWVDGLLASEMQGFRASISAC
>NZ_AP014862.1|WP_003456499.1|1930544_1931714_+|flavin-dependent-monooxygenase
MKKPNPLLEDLKAILPAIAANAARAEQLRRVPDENIALLKGIGLHRALQPKHYGGLEISLPEFADCVVALAGACASTAWAFSLLCTHSHQLAMFSSRLQDEVWGENPDATASSSIAPFGKVEEVEGGVIFNGEMGWSSGSDHAEWAIVGCRRKNAEGEPVYCFAVLPRSDYEIRDDWFAAGMKGSGTKTLVIRDAFVPNYRIQAARDMMEGRSDGFGLYPDSKIFYAPYRPYFASGFAAISLGIAERMLEAYKEKTKNRVRAYTGASVGTATPALMRLAESTHQVAAARAFLEKTWQEHAEHGERHQYPSRETLAYWRTNQAYAVKMCIQSVDRLFEAAGGTSWFESNEMQRLFRDSHMTGAHAYTDYDVCAQILGRELMGLEPDPSMV
>NZ_AP014862.1|WP_003456500.1|1931800_1932739_+|P-hydroxyphenylacetate-hydroxylase-C1:reductase-component
MSSQETLFDSRAFRRALGNFATGVTVVTATAPDGTRVGVTANSFNSVSLEPPLILWSIDKRSSSLAVFERARHFAVNILAADQIELSNQFARPRDDKFEGIAVESGIGGTPLLPDCAARFECELHQRVEGGDHWILIGKVVRFDDFGRSPLLYHQGAYSMVLPHTRMTRKDDGQPASSAFQGRLSHNLYYLMTQAVRGYQSDYQPRQLSSGLRTSEARMLMVLENDAGLGLADLQREVAMPMREIEEAVAILKRKGMVADADDRVLLTPAGVEQAEALWRIAGEQQDKVFARFSPEQVETFKTMLKAVIALG
>NZ_AP014862.1|WP_003456501.1|1932800_1934501_-|methyl-accepting-chemotaxis-protein
MSIQRLFSLIFSAIILCTALLCLLVVLLIGNQRQLGERQENRYQSYLLADELRQSSDDLSRMARTYAVTGDERYARLYQQVLAIRNGQQARPLDYQRPHLDFLAADQDVARGDGQAVALQELMRRRGFSQDELAKLAEAERASNELAGLEAQAFEAVRAGDLARAGELVHSPKYHQEKARIMHPVDDFFVMLDQRTQREVDELHATGSTYMTLVSAMVLLLILISVIGIFSIRRKVSGALLRLSGDARRVADGDLATQLDARSSGEFGVLSHAFGQMVGKLRDIVSNVVHSSSQLSVSAERLTRTSQETLENIRQQELHTVEVATAITEMAATVQEVARHSSQTAEAAQQADRSASSGRQVVDAMVGTIQRLSGDIGEAAEVVQDLATNTASIGGILDVIRGIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAKRTQDSTREIQEMIQRLQEGARQAVEAMAQSRDQAEAGARQADDAGQALESITHANRVISDMAVQIASAAEEQAAVAHDISQRIELIRDLASHNAEGSDQVSSATQGLARLADGLHAQVSHFNLGRT
>NZ_AP014862.1|WP_036994072.1|1934686_1935577_-|LysR-family-transcriptional-regulator
MKRLPPLPALHTFLITAQCCNFTRAAELLHITQGAVSRQIAGLEAHLGYPLFLRQARGLALTDQGREFYPRIQQVFALIDEAVEEVGARRKALQLKAPTCAMRWLLPRLMKWQALRPDVPVELTTTIAYGVDFRREEFDAAMIYAQAPGHGVVARHLFDERLTPVCTRQVLEGPLPLDTPADLERHVLLHPARDKHDWENWLRAAGHNPGPLSGGHHFDTLDLALSVASQGTGIALGDWSLIGDELDKGHLVAPFDLRVPTGGAYYLVYPERREPDPKLRELLDWLWREAHVDKID
>NZ_AP014862.1|WP_003456504.1|1935725_1937189_+|aldehyde-dehydrogenase-family-protein
MSNTLPPFTDTQAGVYINGQWLPGGVELEVVNPATETVLARIGSGDAEHVESAVLAASQAFPGWARSSGAERGALLRRIAEGVRERRDTLIRLQSANNGKPLFEAAIDVDDVIGTFEYYAGLAEGLDARQNSPVELPSEDFAARLRREPCGVVGLIVPWNFPMVTTAWKLAPALAAGCAVVLKPSEVTPLPELELARIIHDAGVPAGVFNLVCGTGLAVGAPLSSHPKVAKVSFTGSNAVGIQVMQRAAETVKGISLELGGKSSLLVLEQADLDLAVELACGGAFFNAGQMCSATSRVLVAEPLVADFLARISARAAAIRVGDPFSEGVEMGALVNQAQYQRVRGHIQRGIESGARLVCGGERPAGLERGFFLQPTVFSEVPKDSALWNEEIFGPVLCVRSFASEEEAIALANDSEFGLVASVVSRDLDAAERVANALQAGMVWINSPQVIFPQTAWGGYKQSSIGRELGPWGLAAFQELKHVVRAV
>NZ_AP014862.1|WP_003456505.1|1937252_1938866_-|FMN-binding-glutamate-synthase-family-protein
MSLSLLSRYAFFAFCVLFTLFSLPFTDHDWIWPFTLLTAALSVLGIFDLLQVPHAVRRNYPVLGNIRYLVESIRPEIRQYLLESDDDRLPFSRAQRSLVYARAKNEGADKPFGTLIDVYRTGYEFIGHSMRPAPLADPGSFRVVVGGPQCTQPYSASVFNISAMSFGSLSANAIRALNRGARLGNFYHDTGEGSISPYHRENGGDLVWELGSGYFGCRTSDGQFDPERFAAQATNPQVRMIEIKLSQGAKPGHGGILPRHKVTEEISLTRGVPMGEDCISPSRHSAFSTPIEMMRFIGRLRELSGGKPVGFKFCLGHPWEFMGIAKAMLETGILPDFIVVDGKEGGTGAAPLEFTDHIGVPLREGLLFVHNTLVGLNLRDKIKIGASGKIISAFDIASVLAIGADWANSARGFMFAIGCIQSQSCHTNKCPTGVATQDKLRQRALVVPDKAQRVQMFHRNTLKGLAEMLAAAGLEHPNQLEPRHLVRRVSDKEIRLFSQIHVFLKPGDLLKDRIEADFYERMWAMARADSFEPATPW
>NZ_AP014862.1|WP_003456506.1|1939083_1939785_-|ABC-transporter-ATP-binding-protein
MLTFEKVSTFYGKIQALHDVSMDVKKGEIVTLIGANGAGKSTLLMTLCGSPRAASGSIRYEGEELVGQESCDIMRKSIAVVPEGRRVFARLTVEENLAMGGFFTEKGDYQEQMDKVLHLFPRLKERFEQRAGTMSGGEQQMLAIGRALMSKPKLLLLDEPSLGLAPIIIQQIFDIIEQLRRDGVTVFLVEQNANQALKLADRGYVLENGRIVMQGSGHDLLNDPKVRDAYLGG
>NZ_AP014862.1|WP_003456507.1|1939788_1940556_-|high-affinity-branched-chain-amino-acid-ABC-transporter-ATP-binding-protein-LivG
MSRPILEVSGLTMRFGGLLAVNGVGLTVNEKQVVSMIGPNGAGKTTVFNCLTGFYQPTSGSIRLDGEQIEALPGHKIARKGVVRTFQNVRLFKEMTAVENLLVAQHRHLNTNFLAGLLKTPGFRRSEREAMDYAALWLDKVNLTDVANRPAGTLAYGQQRRLEIARCMMTRPRILMLDEPAAGLNPKETDDLKALIAMLRNEHNVTVLLIEHDMKLVMSISDHIYVINQGTPLADGTPEQIRNNPDVIKAYLGES
>NZ_AP014862.1|WP_003456511.1|1940552_1941809_-|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivM
MSTRLKTAFFSALLVLAVAYPILGLKLSVVGVGLVVTGADNATLLAIGACAVAMFFWQLLRDKVQGAWAAAPKLPGLSKNASNFLTLPSTQRWFILGLIVLALVWPFFGSRGAVDIATLILIYVLLGLGLNIVVGLAGLLDLGYVGFYAVGAYSYALLSHYYGLGFWICLPIAGLMAATFGFILGFPVLRLRGDYLAIVTLGFGEIIRILLRNMTELTGGPNGISNIDKPTLFGLSFERRAEEGLQTFHEYFGFAYNSINKVIFLYLVALLLALLALFVINRLLRMPLGRAWEALREDEIACRALGLNPTVIKLSAFTLGACFAGFAGSFFAARQGLVTPESFTFIESAIILAIVVLGGMGSQLGVILAAIVMILLPELMREFSEYRMLMFGALMVLMMIWRPQGLLPMQRPHLELKQ
>NZ_AP014862.1|WP_003456513.1|1941805_1942729_-|high-affinity-branched-chain-amino-acid-ABC-transporter-permease-LivH
MPDLYHYLQTLVNGLTVGSTYALIAIGYTMVYGIIGMINFAHGEVYMIGSYVAFIVIAGLTMLGLDSLPIVIFAAFAASIIVASAYGYSIERVAYRPLRGSNRLIPLISAIGMSIFLQNEVLLTQDSKDKAIPNLIPGNFILGESAMNGVVISYMQILIFVVTFLVMYGLTLFISRSRLGRACRACAEDIRMANLLGINTNNIIALTFVIGATLAAVAAVLLGMQYGVINPHIGFLAGIKAFTAAVLGGIGSIPGAMLGGLVLGVAEAFGADLFGDQYKDVVAFSLLVLVLLFRPTGILGRPEVEKV

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Crispr_ID: NZ_AP014862_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP014862_3

2765119-2765217

Orphan

Consensus_repeat	Method
CATTCGCCGGCAAGCCGGCTCCTAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP014862_3

>merge|NZ_AP014862|3|2765119-2765217|CRISPRCasFinder
CATTCGCCGGCAAGCCGGCTCCTACGAAACCGGCACGATTGTAGGAGCGAGCTCGCTCGCGAACGGGGTCCTGACATTCGCCGGCGAGCCGGCTCCTAC

>NZ_AP014862|3|3|2765119-2765217|CRISPRCasFinder
CATTCGCCGGCAAGCCGGCTCCTAC	GAAACCGGCACGATTGTAGGAGCGAGCTCGCTCGCGAACGGGGTCCTGA
CATTCGCCGGCGAGCCGGCTCCTAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014862.1\|WP_003449197.1\|2764542_2765040_+\|thiol-peroxidase	unknown	unknown	gnl\|CDD\|179055
NZ_AP014862.1\|WP_003449200.1\|2763096_2764461_+\|sodium:alanine-symporter-family-protein	unknown	unknown	gnl\|CDD\|224040
NZ_AP014862.1\|WP_003449086.1\|2754880_2755210_+\|YegP-family-protein	unknown	unknown	gnl\|CDD\|225956
NZ_AP014862.1\|WP_051050688.1\|2779692_2780415_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224054
NZ_AP014862.1\|WP_069776281.1\|2781157_2782351_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014862.1\|WP_003449080.1\|2750937_2753112_+\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|227114
NZ_AP014862.1\|WP_003449189.1\|2769423_2772516_+\|MdtB/MuxB-family-multidrug-efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|182501
NZ_AP014862.1\|WP_003449192.1\|2768143_2769427_+\|MdtA/MuxA-family-multidrug-efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|183194
NZ_AP014862.1\|WP_158526753.1\|2780414_2781125_-\|ABC-transporter-permease	unknown	unknown	unknown
NZ_AP014862.1\|WP_003449205.1\|2755834_2756647_-\|exodeoxyribonuclease-III	unknown	unknown	gnl\|CDD\|236970
NZ_AP014862.1\|WP_100244176.1\|2759229_2762862_+\|translocation/assembly-module-TamB	unknown	unknown	gnl\|CDD\|225463
NZ_AP014862.1\|WP_003449185.1\|2772631_2775739_+\|MMPL-family-transporter	unknown	unknown	gnl\|CDD\|182589
NZ_AP014862.1\|WP_003449193.1\|2766541_2767975_-\|TldD/PmbA-family-protein	unknown	unknown	gnl\|CDD\|223389
NZ_AP014862.1\|WP_003449169.1\|2777359_2778886_-\|IS66-family-transposase	unknown	unknown	gnl\|CDD\|376980
NZ_AP014862.1\|WP_003449083.1\|2753235_2754603_-\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|270371
NZ_AP014862.1\|WP_096368068.1\|2778905_2779259_-\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	unknown	unknown	gnl\|CDD\|377551
NZ_AP014862.1\|WP_003449203.1\|2756800_2757454_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379228
NZ_AP014862.1\|WP_036991610.1\|2757490_2759221_+\|outer-membrane-protein-assembly-factor	unknown	unknown	gnl\|CDD\|223801
NZ_AP014862.1\|WP_003449184.1\|2775735_2777235_+\|efflux-transporter-outer-membrane-subunit	unknown	unknown	gnl\|CDD\|273830
NZ_AP014862.1\|WP_003449076.1\|2749537_2750548_-\|TerC-family-protein	unknown	unknown	gnl\|CDD\|274743

Protein	Function_ID	Function_description	E-value
NZ_AP014862.1\|WP_003449197.1\|2764542_2765040_+\|thiol-peroxidase	gnl\|CDD\|179055	PRK00522, tpx, thiol peroxidase.	2.84423e-105
NZ_AP014862.1\|WP_003449200.1\|2763096_2764461_+\|sodium:alanine-symporter-family-protein	gnl\|CDD\|224040	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism].	0
NZ_AP014862.1\|WP_003449086.1\|2754880_2755210_+\|YegP-family-protein	gnl\|CDD\|225956	COG3422, COG3422, Uncharacterized conserved protein [Function unknown].	7.50243e-12
NZ_AP014862.1\|WP_051050688.1\|2779692_2780415_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	5.98083e-35
NZ_AP014862.1\|WP_003449080.1\|2750937_2753112_+\|TonB-dependent-siderophore-receptor	gnl\|CDD\|227114	COG4773, FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion transport and metabolism].	0
NZ_AP014862.1\|WP_003449189.1\|2769423_2772516_+\|MdtB/MuxB-family-multidrug-efflux-RND-transporter-permease-subunit	gnl\|CDD\|182501	PRK10503, PRK10503, MdtB/MuxB family multidrug efflux RND transporter permease subunit.	0
NZ_AP014862.1\|WP_003449192.1\|2768143_2769427_+\|MdtA/MuxA-family-multidrug-efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|183194	PRK11556, PRK11556, MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit.	8.85061e-160
NZ_AP014862.1\|WP_003449205.1\|2755834_2756647_-\|exodeoxyribonuclease-III	gnl\|CDD\|236970	PRK11756, PRK11756, exonuclease III; Provisional.	0
NZ_AP014862.1\|WP_100244176.1\|2759229_2762862_+\|translocation/assembly-module-TamB	gnl\|CDD\|225463	COG2911, COG2911, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_AP014862.1\|WP_003449185.1\|2772631_2775739_+\|MMPL-family-transporter	gnl\|CDD\|182589	PRK10614, PRK10614, multidrug efflux system subunit MdtC; Provisional.	0
NZ_AP014862.1\|WP_003449193.1\|2766541_2767975_-\|TldD/PmbA-family-protein	gnl\|CDD\|223389	COG0312, TldD, Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only].	2.11075e-84
NZ_AP014862.1\|WP_003449169.1\|2777359_2778886_-\|IS66-family-transposase	gnl\|CDD\|376980	pfam03050, DDE_Tnp_IS66, Transposase IS66 family. Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.	6.60407e-134
NZ_AP014862.1\|WP_003449083.1\|2753235_2754603_-\|OmpA-family-protein	gnl\|CDD\|270371	cd13653, PBP2_phosphate_like_1, Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 periplasmic binding fold superfamily. This subfamily contains uncharacterized phosphate binding domains found in PstS proteins that serve as initial receptors in the ABC transport of phosphate in eubacteria and archaea. After binding the ligand, PstS interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The PstS proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	7.78271e-69
NZ_AP014862.1\|WP_096368068.1\|2778905_2779259_-\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	gnl\|CDD\|377551	pfam05717, TnpB_IS66, IS66 Orf2 like protein. This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition.	2.33177e-37
NZ_AP014862.1\|WP_003449203.1\|2756800_2757454_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	6.67595e-06
NZ_AP014862.1\|WP_036991610.1\|2757490_2759221_+\|outer-membrane-protein-assembly-factor	gnl\|CDD\|223801	COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane].	1.70801e-163
NZ_AP014862.1\|WP_003449184.1\|2775735_2777235_+\|efflux-transporter-outer-membrane-subunit	gnl\|CDD\|273830	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. [Cellular processes, Detoxification, Transport and binding proteins, Porins].	2.20075e-114
NZ_AP014862.1\|WP_003449076.1\|2749537_2750548_-\|TerC-family-protein	gnl\|CDD\|274743	TIGR03718, R_switched_Alx, integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.	2.48125e-147

>NZ_AP014862.1|WP_003449197.1|2764542_2765040_+|thiol-peroxidase
MAQVTLKGNPINVDGQLPQKGQQAPAFSLVGGDLSDVTLASLSGKRKVLNIFPSIDTPTCATSVRKFNVEASKLPNTVVLCISADLPFAQKRFCGAEGLDNVVNLSTMRGASFLKDYGVAIASGPLVGVAARAVVVLDENDKVLHSELVGEIADEPDYAAAIAAL
>NZ_AP014862.1|WP_003449200.1|2763096_2764461_+|sodium:alanine-symporter-family-protein
MESINTLVNQINGLVWGPPMLVAILGTGLFLMVFLRFMPLLRIGTGFRLLWQGRAKGDEESGEISPFQALMTCLAATVGTGNIAGVATAIFLGGPGALFWMWCTALVGMATKYSEVVLAVHYREKDARKEHVGGPMYAIKNGLGKKWLWLGTAFAIFGGLAGFGIGNMVQVNSMAHALESTFNVPFWVTGVVTMVVTGLVILGGIRRIGKVAEALVPFMCVAYIIASIAVLIINVDAIPGAFELIFTHAFSPAAATGGFAGAAVMAAIRFGVARGIFSNEAGLGTAGIAQAAGTTNSPVRSGLIGMLGTFIDTLIICTMTGLVIICSGVWTSGQSGAALSAAAFESALPGFGAIILSLALVIFAYTTILGWSYYGERCWEFLVGTKAILPFRIVWVLAIPFGAVAQLDFAWLVADTLNGLMALPNLLSLLLLSPVVVKLTREYFARQSSAVEAS
>NZ_AP014862.1|WP_100244176.1|2759229_2762862_+|translocation/assembly-module-TamB
MKIGLSGLAVVLAALLAVPAVLLFTEAGGRWALRQVPGLQLEGFSGHLGGRWRAERLAWRQDGTRLELEAPLLDWSPACLLRRTLCIDELASERIRLDLPPSTSDEEGAPFRLPELRLPLALQIGQVRVGRFLLQGDDQLQELDLVARWQADGLHVERLSLRRDDLALDLSGHLRPEGDWPLAVQGTLKLPAPGDTPWALTLKAAGDLQGLVRLDADSQGYLDGHLDGEVRPLAPQLPASATLRADGFKASPDLPDTLTLNQLQLTARGDLQQGYAVQGQANLPGEGGALALRLDGQVDARGADIRQLQLDGEPQQLLAVQGRVDWQDALAVDSRLQWRDFPWQRLFPQESPPPVALHSLEAEFRYGRERYQGRFDGHFSGPAGDFTLASPVEGDLGSVSLPDLLLKAGQGKAQGKVRIDFAEGLGWDSQLALSDLDPAYWVAELPGRLAGRLHSRGTWRDERLELNADLDLKGTLRGQPAQLLARADGAGERWNLGMLQVRLGDNRIEGQGRLEQRLSGHLDLALNRVGQLWPGVFGRLGGRLDLAGTLQAPQGTLRLDGRRLGQGDTRIRTLALQAQLDGAQRGGLRLQADGLASGDTRFGTLLLEGSGTQARQQLELSLEGGVLALSLGLDGQLDKGNWRGRLARGEVQSQGQDWKLAAPARLERLADGRINFGSHCWRSGPASLCGGEQRLMPEPRLDYRLRDFPLASLAHALPADFAWQGTLNGDLRLDLPASGPDGRITLDAGSGTLRLKEDDRWLDFPYQRLLLDSTLRPQRIDTQLIFEGQGLGQLQLDARIDPRPASKPLSGQFSLSGVELAVLRPFLPVVEELAGRLDGSGTLSGTLQAPYVLGNLRLREGRIAGGDLPTPFEDLGLDARIAGESLELSGQWRGGEQGRGSLSGNLAWAQGLDVDLAVRGSRLPLVVEPYANLEVEPDLRIGLAGERLAVTGKVQVPRGRIRIRELPPQAVKVSPDARILGQPEEQRQALQMAMDVSVEVGQDRLRFAGFGLTADLQGHLQVGDNLTGNGELVLRNGRYRAYGQRLDLRRARLLFAGPLDQPYLDVEAVRNVGDVTAGLRLNGRADEPTTEVFSTPAMSQEQALSYLILGRPLNSGGDGNAVGQAALAMGLSGTASMTSDLAQRLGLKDLQLDEDGALGQLSERLSFRYGLGVVDSTSVVALRYELTKRLYLEAASGLASSLDLFYKRDF
>NZ_AP014862.1|WP_036991610.1|2757490_2759221_+|outer-membrane-protein-assembly-factor
MNFCQGLRGPLLLGLLCTMNPALAKATLDVKIEPANGALKANIEAFIGSISDRDEEALRRFRRSAQEQASQAAQALGYYQAEIRSRVKGGKDPVLLVRVVPGEPVRLRNVAVRIEGEASSLGAFRVPQSKALSPGAQLNHGAYEDAKKLIQNQGLRYGFFDGRFTRQRLDIDPRAGVADIELVYDSGPRYSLGGVSFEGETPFDADLLSRLVPFPANTPYDSDEVAKLSQNLQASGYFEEVRVDASPVKGQGRLIPVKVRLTPAKPRTLGLGVGFSTDVGPRARANWTRHWINAQGHRLGAETEVSPVRQSLGTWYEIPLDPPLTDTLRFTSGVQRENLVDVDSRRVTLGGQWQSKLPDDWQRVISLRWEQETFDYGDGSDDGRSSFLIPGISYGVTRSDHKLDPSQGYSLQFDVRGAKEGILSDTDFTYASVMAKGLYTLPGGHRLLGRVQTGGIATTDFEAIPPSLRFFAGGDQSVRGYDYQTLSPEDNNGKKVGGRYLLVGSAEYQYPIAEKWRLAAFVDRGNAMDSLSAAMKTGAGLGVRWVSPVGPIRLDLAKALDDPGGFRIHFSMGPEL
>NZ_AP014862.1|WP_003449203.1|2756800_2757454_+|GNAT-family-N-acetyltransferase
MPGYVPNAPVEVRMLDGGYAREARSLLYHAYRHEPTFAYLFESERPGYDQRVRATVRELVQQHFLQELPAIGLLIEDRLVGIALIAPPQRRLDITESWAWRLRMLLSTGFACTRRYLDYHEAVLACLPPGPYHVLPLLGIHPQFQGRHLGEKLLEALHEWCAADDSSQGVVLDTGNARYLEFYKRQGYEEVGEVALGSVVEHVFFHPNPRPLIRASG
>NZ_AP014862.1|WP_003449205.1|2755834_2756647_-|exodeoxyribonuclease-III
MKIVSFNINGLRARPHQLEALIAKHQPDVIGLQETKVADDQFPEAEIRQLGYHVHYHGQKGHYGVALLSRQEPLSLSKGFPGDTEDAQRRFIYGTFADAQGNPVTVMNGYFPQGESRDHPVKFPAKERFYADLQGLLENQFQPSQPLVVMGDINISPEDCDIGIGEVNRKRWLKTGKCSFLPEEREWLERLKGWGLVDSFRHLNPEVNDRFSWFDYRSRGFEDEPKRGLRIDVILASQPLQARFRDAGIDYDLRGMDKPSDHAPIWLELA
>NZ_AP014862.1|WP_003449086.1|2754880_2755210_+|YegP-family-protein
MSGWFELRKNSGGTWRLRLKAADAQTLLDTGVYPDRGAAESAIASFRENCAHEERYVRRIDSSGKNYFKLRCVRKEIIARSHLYDSESTLQQAIETIMRVGQTQVVKEA
>NZ_AP014862.1|WP_003449083.1|2753235_2754603_-|OmpA-family-protein
MPRATTASDKELWGQALSLLLLGFICYAFPWSVLAAEVAPSLRIQGSNTIGAKLGPALVRGMLEEEGIRGIRQVPGERENEVHIEGQDAQGRAVRIELAAHGSSTGFSALGDGSADLAASSRPIKDAEAQALSAFGDLRSPYSEQVIAIDGLAIILHPGNPLRALSTAQLAAVFAGEVSTWEELGSQGGAIRLYARDDQSGTYDTFKELVLARQGKSLAAGAQRFESSDRLSAAVSADPQGIGFVGLASIGQARALAIVDGESQPMAPSTDLIATEDYPLSRRLYLYMKPGEQNPWADALLRFAQSPPGQAIVERSGFIAQQVGAVRMAPRADMPEDYRTLATEAERLSVNFRFQEGSASLDNKALRDVQRLVDYLKQRGKLQRKVVLVGFGDAKADPQRAELLSRLRAMAVRRELAKGGVALKDVKGFGDVLPVAANSAEDGRNRNRRVEVWVY
>NZ_AP014862.1|WP_003449080.1|2750937_2753112_+|TonB-dependent-siderophore-receptor
MFTRHTRHPLSIAVLGVTLALQAGAGFAQDRSKTEGALELGATAITDERLGETTEGTGSYTTGTTRSATRLALSPRETPQSISVITRQQMDDQNLTSLSDVLAKTPGVTVSGFDSSRATFSARGFEIDNFQIDGIPAAFRFGNGIDQADMVIYDRVEVLRGSNGLLSGFGSPSATVNLVRKRPTRELSGYASTSAGSWDTYRGEFDIGGALTSEGNVRGRFVSAYEDRQSFMDHLSEKKQVFYGILETDITDDLLLSAGLSRQTNRPEGSSWGDSTPVYDSNGDEFALPRSFNPGTRWSQWDNTTDNAFVTLEQRLANDWVVKGSIAHTRTDSPITLGSAGSGNPNPVDGSGMGIWLGKYRYEAVQNAYDLHASGPFQLMGREHELMAGVSHRDIDHDATNWPFLFGMADNIFNWNGNFPKPDWGNPIYRDETELKETAAYLASRLKPSDDLSIILGARVSDWQLDTTRNLFATGSRTRVQDAQESGVVVPYAGVVYDLDRTYSVYASYTRIFKPHESEKDASGALIEPEEGDAYELGLKGEFFDGRLNASAALFHVKQDNLADLVGTDPATNAGIYRAISGAETRGIEFEVAGELARNWQVQGGYTHRVTRDGDDDKVSTTEPEDLFRLSTAYRLPGRFDKLTLGGSASYQSRIWTDDITPRYTQGSYWLLDAMARYQLTEQVSLAVNGNNLTDEKYFSSIGNFGGAIYGDPRNYTLSARLDF
>NZ_AP014862.1|WP_003449076.1|2749537_2750548_-|TerC-family-protein
MAALQAFLTADFLGTAIWLWLAFLAIVLALLVFDLGVLHRDQHEIEMRESLLLYGGYFGVGVLFGVWVWFELGAQSAIEFYTGFLVEQSLSMDNVFVMAMIFGFFAIPRRYQHRVLFWGILGVVVLRAIMIGLGSALVKEFDWILYVFGAFLLFTGVKMLFSREESHPDLANNPVLKFVRRHIRVTDDLHGSHFFVRLKQPGQSKALLYATPLFLALVLIELADLVFAVDSVPAIFAITQDPFIVYTSNIFAILGLRALYFALAALMHRFVYLKYALALVLIFIGGKIFLHGLIGKIPPLLSLGVTFGLLAGGVVLSLLKTRDRPVEKSGDLEKHG
>NZ_AP014862.1|WP_003449193.1|2766541_2767975_-|TldD/PmbA-family-protein
MFDSIRQRFAALGTCAEFHSLRVVRQRTERALLRRGVAEPPALELDQGAMLSVRLNGIEAYAATADLSVAGLQRALARAEAMAARIAAYTLLDQAQLQPPKERSRYESPQASSAFPGLAERFELLAEESASVPADPRLVNWTLYLDSQRVEQLYLSSTGAEQWQDLRFTYPGISVTAFDDHDSQTRSFGGYGSGQQGGMEVLGRLGFRGAAPRIAEEALRLLAAPNTPCDTRDLLLMPDQMMLQIHESIGHPLELDRILGDERNYAGTSFIGLEDFGRYQYGSPLLNVSFDPGIPEELASYSHDDDGQPARKEMLIQAGRLLRPLGGALSQWRSGLPGVANSRASGWNRAPIDRMANLNLEPGNQTLDQLIGGIERGVLMSTNRSWSIDDARNKFQFGCEWGRLIENGELKAVVKNPNYRGVSAQFWRNLVAVGDASTVEVHGTPYCGKGEPNQVVRVGHASPACVFRQVEVFGGEP
>NZ_AP014862.1|WP_003449192.1|2768143_2769427_+|MdtA/MuxA-family-multidrug-efflux-RND-transporter-periplasmic-adaptor-subunit
MSPNTLQNPKSRSLRNWLLLAVALAALIALIWWLWPEAAGKSAQQAGRGGPGRPGFGAFSGPVPVRVAPITQGDFPVYLKALGTVTALNTVNVRGRVDGELVKLEFEEGQQVKAGDLLAVIDPRPYQVALQQAEGTLAQNRAQLKNAEIDLARYRGLYAEDSIAKQTLDTQEALVAQYRGTIKTNEAAVAEARLNLGFTQVRAPISGRLGLRQVDLGNLVSSGDTTPLVVITQTRPISVAFTLPEGQLPAVVSRYRAGETLVVEAWDRDEKVKQAEGVLQSLDNQIDTTTGTLKLKARFANQDETLFPNQFVNVRLRAELLSNAVLIPSAAVQFGSEGTFAYVMDGEKKVRVRKLETGPDDGQRTVVRSGLEPGDRVVLEGTDRLRDGAEVEVVHDAEQIPTAPAEQLQGQRPEGRERNAGEKKGGV
>NZ_AP014862.1|WP_003449189.1|2769423_2772516_+|MdtB/MuxB-family-multidrug-efflux-RND-transporter-permease-subunit
MNLSRLFILRPVATTLSMLAILLAGLIAYRLLPVSALPEVDYPTIRVMTLYPGASPDVMTSAVTAPLERQFGQMPGLTQMSSTSSGGASVITLRFSLEVQLDVAEQEVQAAINAATNLLPSDLPAPPVYNKVNPADTPVLSLAISSKTLPLPQLHNLVDTRMAQKLAQISGVGMVSIAGGQRQAVRIRVNPEALAANGLNLSDVRSLVSASNVNQPKGNFDGPTRVSMLDANDQLKSAEEYANLILAYNNGAALRLKDVASIIDGAENERLAAWANRNEAVLLNIQRQPGANVIEVVDRIRTLLPSITANLPAGLDVVVLTDRTQTIRAAITDVKHELFIAIALVVMVTFLFLRRVSATVIPSIAVPLSLVGTFAVMYLAGFSINNLTLMALTIATGFVVDDAIVMLENIARHLEEGETPLNAALKGAKQIGFTLISLTFSLIAVLIPLLFMADVVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKRETREEQGGFYKASGAVIDGMIERYGRGLTWVLKHQGLTLLVALGTLALTVVLYLAVPKGFFPVQDTGVIQGITEAPQSVSFRAMSERQQQVAARVLKDPAVESLSSYIGVDGDNATLNSGRMLINLKPHGERDVTATEVIQRLQPELDRLSDIRLYLQPVQDLTIEDRVSRTQFQFSLESPDADLLHAWTVKLVDALRQQPELSDVASDLQDKGLQVFLNIDRDVAGRLGVEISAITDALYDAFGQRQISTIFTQASQYRVVLESSNGGSIGPAALQQIHVANRDGVQVPLSSLSRVEERQAQLAINHIGQFPAVTLSFNLAPGVALGEAVAVIERVQREIGMPEGVQTRFQGAAAAFQASLSSTLLLILAAVVTMYIVLGVLYESYIHPVTILSTLPSAGVGALLALLLTGNDLGLIAIIGIILLIGIVKKNAIMMIDFALEAERHQGMSPEAAIYQAALLRFRPILMTTLAALFGTIPLMLASGSGAELRQPLGLVMVGGLLLSQVLTLFTTPVIYLAFDRLSRRLTGRSAAGVEA
>NZ_AP014862.1|WP_003449185.1|2772631_2775739_+|MMPL-family-transporter
MNLSAPFIRRPVATMLLSLAIFLLGSVSFGLLPVSPLPQMDFPVITVQASLAGASPEIMASSVTTPLERSLGSIAGINQMTSRTSQGSTRIIIEFDLDRDINGAARDVQAAINASRNLLPSGMRSMPTYRKVNPSQAPIMVLSLTSDVLEKGQLYDLASTILAQSLSQVPGVGEVQIGGSSLPAVRVELEPQLLNQYGLALDDVRSAIAAANQRRPKGAVEDAGRHWQVGASDQLEKAADYEPLILRYQDGAALRLKDVAKVRDAVEDRYNSGFYNDDSAVLLVINRQAGANIIETIERIKAQLPALQAVLPASVNLNLAMDRSPVIRATLHEAELTLVIAVSLVILVVYLFLGNLRASLIPALAVPVSLVGTFAAMYLMGFSLNVLSLMALILAAGLVVDDAIVVLENISRHINNGMAPFKAALQGTREVGFTLLSMNLSLVAVFVSILFMGGIIDRLFREFALTLAVAILVSLLVSLTLTPMLCARWLKPHVPDRDSRLQRWSEVIHVRMVAAYDRTLGVALRHPRLTLASLLLTIACNVALYVLVPKTFLPQQDTGQLIGFIRGDDGLSFTVMQPKMETFRRAVLADPAVESVAGFIGGSGGINNAFMIVRLKPIKERNISAQKVIERLRANLPKVPGGRLMLMADQDLQFGGGREQRSSQYEYVLQAGELSDLRTWMPKVTAALKSLPELTAIDANEGEGAQQITLQVDRDAAKRLGIDMAMVSSALNNAYSQRQISTIYDSLNQYQVVMEVNPKYAQDPATLQQVQLITADGQRVPLSTFARYERSLEEDRVTHEGQFAAEGISFDLAPGVNLEQATVAIERAVAAIGMPSSVIARLGGSADAFAKTQQNQPWMILAALVLVYLVLGILYESYIHPLTILSTLPSAGVGALLAILLTGGEFSLISLLGLFLLIGVVKKNAIMMIDLALQLERQDGLSPDESIRQACLLRLRPILMTTIAAILGAVPLLIGGSEGAEMRQPLGIAIIGGLVLSQLLTLYTTPVVYLYLDRLRHRFNRWRGVRSDAALETPL
>NZ_AP014862.1|WP_003449184.1|2775735_2777235_+|efflux-transporter-outer-membrane-subunit
MTAFATSVKPLRHAVALALAGLLLGGCAIGPDYQRPEQSVPAQFKHAEGWTLASPADLAQRGDWWTLYGDATLSDLQQRLDVSNQTLAQSVAQYRQAQALARGARSSFFPSVNLNTSKTRSGQGGGSSTVRLSDGSTVTSSGSGGISKSYDASLGVNWEIDLWGKLRRQLESDTASMEASAADLAAARLSLQSELAQNYLQLRVLDAQKRLLDATIAAYQRALTLTENQYRAGIVTRADVAQATTQLKSTQAQAIDLRYQRAQLENAIAVLVGVPPAEFSLAEVDGLPRLPNVPALLPSQLLERRPDVASAERNVMAANARIGVAKAAWFPSLSLSAAGGYRSGSLQDWITTPNRFWSIGPEFAMTLFDAGLIRSQVDQAEAAYDQTVATYRQTVLDSFREAEDYMVQLDVLEEESGVQQEALDAAREALRLVTNQYRAGTVDYTSVVTSQATALSNERTLLTLMGTRLTASVQLIAALGGGWDPERLEQVDPESEERP
>NZ_AP014862.1|WP_003449169.1|2777359_2778886_-|IS66-family-transposase
MKSGADSLPDDPVLLKQMLLLAHGKVAQLQEQVALLRHKLFSPKSERSPEDADSPQLAMFNEAEELLEEPAGGSSEAEAEEVVAPVKRRGKRKPLPANLPRVDVIHELPEYERTCTCGACKQVIGEETSEQLEIIPMQVRVIRHIRKTYACKACETAPVTADKPAQLIEKSLASPSVLAMLLTTKYADGIPLYRFEKMLSRHGIDIPRQTLARWVIQSGEQLQPLLNLMRDQLLGYPVLHCDETRLQVLHEPGRDPTAQSWMWVQSGGPPEKPVVLFDYSTSRAQDVPLHLLEGFSGYLMTDDYAGYNAVAAQTGIERLACWAHARRKFIDAQKVQPKGKIGRADMALNLINKLYGIERDLKEANDSERLVARQQRSQPLLDQLKAWLDKTQPQVAAQNALGKAVNYLASNWSRLVRYVEGGHLPIDNNRAENAIRPFVIGRKNWLFSDTPKGATASAQIYSLIETAKANGQEPYAWLRYILERLPLANSIEDFEALLPWNCPPTNAS
>NZ_AP014862.1|WP_096368068.1|2778905_2779259_-|IS66-family-insertion-sequence-element-accessory-protein-TnpB
MRPDAKVKAVYLYPKPVDFRKSIDGLAALVELDIKVAVFDPVLFVFLNKTRNRVKILYWERNGFCLWLKRLQAERFKTKPDAEEPIVLTVRELNQLLAGFDLWGNQPHKVLTPRFVS
>NZ_AP014862.1|WP_051050688.1|2779692_2780415_-|ATP-binding-cassette-domain-containing-protein
MTSFSKKFLEVKLIDFAHKKNKIFNAASMKISEREIIGILGPNGSGKTTLFDLICNISKPNSGLIYNTFERQSYLSQTITTPPLLKMHEIFTMASSLTCEDRYPETQTLNKLKKLAPEIVGRYNELLKKKSAICSYGEKRWFFALLALTNGSDLVILDEPTAGVDPEFRHYIWKCIKGFSMDGGAVLVSSHNTEEIIQNCTCFYMISNKKLKKYMSKDSFLSAYHTKTLDEAFIAAASAH
>NZ_AP014862.1|WP_158526753.1|2780414_2781125_-|ABC-transporter-permease
MKILITEQLREPISILWTTISPISIFYYNLLNKSRNQELTRESYTEISSLYFSYISASVAFFGLSLYIIGRRESGFIRSFIYTKQSRNTFLAAQILAYCTVSLIYFSTFYIITSISITDYSIIHYASLGARFISCFFLFSIFGLLITLAPLSFQNSSTTMSIIIFTAVGSAIYSTHSNNHFLQYINLINPVHYATDIMKNGLSHNIMAVLFTAIFFPATALLASKKMIVNPVWSRY
>NZ_AP014862.1|WP_069776281.1|2781157_2782351_-|hypothetical-protein
MNIANQSIFLTSPNILQLQPSAVKELPPSLEVYDSWRNIGAGIGRSGSWYSTAIGEYFERRHFNAEVPYTKKALLGEYLDQDETNSFASAFIQTSKEGITSILSHRFHITEVFRLKDFSKCGIPSITLSLGARNYFEDNRFYPRRDTCGSSFHLGLESSLLGAIKEILERNFLLRFWLTNKCSEIYSKEHIEKVLSNQETYSLFNLLSKHGNLKAFNISDPIFPGECALVIYGAHSNSSTVRYCAGMSYASSSGDALNKSLLELWQTFRFLNLFETGFQDTSTIKDPYQRHFIKCNSISTYEEISNPHVDQPRPKNHKHKITLQNLVESIESLGASGFLYVKEETNSEGRMHYSRFVSPDFFMHMNNAEAFNLENLYSRRFLTDILKRRLGKMVPFP

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Crispr_ID: NZ_AP014862_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP014862_4

3385315-3385432

Orphan

Consensus_repeat	Method
GTGCAAACCTTCGCGGGCAAGCCCGCTCCTACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP014862_4

>merge|NZ_AP014862|4|3385315-3385432|CRISPRCasFinder
GTGCAAACCTTCGCGGGCAAGCCCGCTCCTACCCTAGATCGGTGCCGAGCGAAGCCCTGTAGGAGCCGGCTCGCCGGCGAAGACCGTGCAGACCTTCGCGGGCAAGCCCGCTCCTACC

>NZ_AP014862|4|4|3385315-3385432|CRISPRCasFinder
GTGCAAACCTTCGCGGGCAAGCCCGCTCCTACC	CTAGATCGGTGCCGAGCGAAGCCCTGTAGGAGCCGGCTCGCCGGCGAAGACC
GTGCAGACCTTCGCGGGCAAGCCCGCTCCTACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014862.1\|WP_003448771.1\|3380563_3380956_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014862.1\|WP_003448772.1\|3380186_3380468_+\|peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|185338
NZ_AP014862.1\|WP_003448783.1\|3377611_3377815_-\|YbdD/YjiX-family-protein	unknown	unknown	gnl\|CDD\|225434
NZ_AP014862.1\|WP_004420010.1\|3399331_3399904_+\|Microcystin-dependent-protein	unknown	unknown	gnl\|CDD\|227020
NZ_AP014862.1\|WP_003448768.1\|3382823_3383723_-\|DUF2950-domain-containing-protein	unknown	unknown	gnl\|CDD\|371539
NZ_AP014862.1\|WP_003448765.1\|3385445_3386942_-\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NZ_AP014862.1\|WP_004420028.1\|3404671_3405991_-\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_AP014862.1\|WP_004420025.1\|3402578_3404672_-\|biotin/lipoyl-binding-protein	unknown	unknown	gnl\|CDD\|223914
NZ_AP014862.1\|WP_003448770.1\|3381943_3382231_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014862.1\|WP_003448769.1\|3382227_3382797_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375653
NZ_AP014862.1\|WP_004420017.1\|3400781_3401762_-\|sulfotransferase-family-protein	unknown	unknown	unknown
NZ_AP014862.1\|WP_003448784.1\|3376428_3377403_-\|GTPase	unknown	unknown	gnl\|CDD\|183183
NZ_AP014862.1\|WP_004420021.1\|3401749_3402550_-\|aspartyl/asparaginyl-beta-hydroxylase	unknown	unknown	gnl\|CDD\|377460
NZ_AP014862.1\|WP_004420016.1\|3400293_3400794_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_AP014862.1\|WP_096368039.1\|3386993_3398426_-\|DUF4347-domain-containing-protein	unknown	unknown	gnl\|CDD\|372982
NZ_AP014862.1\|WP_051050675.1\|3399923_3400226_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014862.1\|WP_004420008.1\|3398725_3399313_+\|Microcystin-dependent-protein	unknown	unknown	gnl\|CDD\|227020
NZ_AP014862.1\|WP_003448781.1\|3377828_3379886_-\|carbon-starvation-protein-A	unknown	unknown	gnl\|CDD\|184976
NZ_AP014862.1\|WP_003448767.1\|3383735_3385118_-\|DUF3300-domain-containing-protein	unknown	unknown	gnl\|CDD\|378701
NZ_AP014862.1\|WP_096368038.1\|3375105_3376371_+\|OprD-family-porin	unknown	unknown	gnl\|CDD\|335381

Protein	Function_ID	Function_description	E-value
NZ_AP014862.1\|WP_003448772.1\|3380186_3380468_+\|peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|185338	PRK15441, PRK15441, peptidyl-prolyl cis-trans isomerase C; Provisional.	1.17067e-30
NZ_AP014862.1\|WP_003448783.1\|3377611_3377815_-\|YbdD/YjiX-family-protein	gnl\|CDD\|225434	COG2879, COG2879, Uncharacterized small protein [Function unknown].	4.26629e-33
NZ_AP014862.1\|WP_004420010.1\|3399331_3399904_+\|Microcystin-dependent-protein	gnl\|CDD\|227020	COG4675, MdpB, Microcystin-dependent protein [Function unknown].	2.03256e-41
NZ_AP014862.1\|WP_004420008.1\|3398725_3399313_+\|Microcystin-dependent-protein	gnl\|CDD\|227020	COG4675, MdpB, Microcystin-dependent protein [Function unknown].	4.08976e-47
NZ_AP014862.1\|WP_003448765.1\|3385445_3386942_-\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	5.10096e-15
NZ_AP014862.1\|WP_004420028.1\|3404671_3405991_-\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	1.23551e-13
NZ_AP014862.1\|WP_003448769.1\|3382227_3382797_+\|hypothetical-protein	gnl\|CDD\|375653	pfam18226, QslA_E, LasR-specific antiactivator QslA chain E. This domain is chain E of QslA present in Pseudomonas aeruginosa. QslA is an antiactivator which binds to the transcription factor LasR, disrupting its dimerization and preventing LasR from binding to target DNA. Chain E interacts with chain F of QslA and forms the dimerization interface. Chain E also interacts with chain A of ligand-binding domain in LasR.	0.00285847
NZ_AP014862.1\|WP_003448784.1\|3376428_3377403_-\|GTPase	gnl\|CDD\|183183	PRK11537, PRK11537, putative GTP-binding protein YjiA; Provisional.	6.0292e-145
NZ_AP014862.1\|WP_003448768.1\|3382823_3383723_-\|DUF2950-domain-containing-protein	gnl\|CDD\|371539	pfam11453, DUF2950, Protein of unknown function (DUF2950). This is a bacterial family of uncharacterized proteins.	9.29971e-147
NZ_AP014862.1\|WP_004420021.1\|3401749_3402550_-\|aspartyl/asparaginyl-beta-hydroxylase	gnl\|CDD\|377460	pfam05118, Asp_Arg_Hydrox, Aspartyl/Asparaginyl beta-hydroxylase. Iron (II)/2-oxoglutarate (2-OG)-dependent oxygenases catalyze oxidative reactions in a range of metabolic processes. Proline 3-hydroxylase hydroxylates proline at position 3, the first of a 2-OG oxygenase catalyzing oxidation of a free alpha-amino acid. The structure of proline 3-hydroxylase contains the conserved motifs present in other 2-OG oxygenases including a jelly roll strand core and residues binding iron and 2-oxoglutarate, consistent with divergent evolution within the extended family. This family represent the arginine, asparagine and proline hydroxylases. The aspartyl/asparaginyl beta-hydroxylase (EC:1.14.11.16) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins.	6.05978e-14
NZ_AP014862.1\|WP_004420016.1\|3400293_3400794_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.54396e-10
NZ_AP014862.1\|WP_096368039.1\|3386993_3398426_-\|DUF4347-domain-containing-protein	gnl\|CDD\|372982	pfam14252, DUF4347, Domain of unknown function (DUF4347). This domain family is found in bacteria and eukaryotes, and is approximately 160 amino acids in length. There are two completely conserved residues (C and G) that may be functionally important.	5.08026e-57
NZ_AP014862.1\|WP_004420025.1\|3402578_3404672_-\|biotin/lipoyl-binding-protein	gnl\|CDD\|223914	COG0845, AcrA, Membrane-fusion protein [Cell envelope biogenesis, outer membrane].	1.39897e-10
NZ_AP014862.1\|WP_003448781.1\|3377828_3379886_-\|carbon-starvation-protein-A	gnl\|CDD\|184976	PRK15015, PRK15015, carbon starvation protein CstA.	0
NZ_AP014862.1\|WP_003448767.1\|3383735_3385118_-\|DUF3300-domain-containing-protein	gnl\|CDD\|378701	pfam11737, DUF3300, Protein of unknown function (DUF3300). This hypothetical bacterial gene product has a long hydrophobic segment and is thus likely to be a membrane protein.	6.54813e-118
NZ_AP014862.1\|WP_096368038.1\|3375105_3376371_+\|OprD-family-porin	gnl\|CDD\|335381	pfam03573, OprD, outer membrane porin, OprD family. This family includes outer membrane proteins related to OprD. OprD has been described as a serine type peptidase. However the proposed catalytic residues are not conserved suggesting that many of these proteins are not peptidases.	0

>NZ_AP014862.1|WP_003448767.1|3383735_3385118_-|DUF3300-domain-containing-protein
MFIRNRFTAALLFLLAGNPVLGATDAGISAAEGDASPTAGVAAAPAPPKASEAVFRTEELDQMMAPVALYPDSLLAQVLMAATYPGDVADAAAWSKAHPDAEGDAAVKQVADQPWDPSVQSLVAFPAVLATLGQDPAWVQRMGDAFLAQPDAVMDAVQRLRRQAQAAGNLESNEQQKVSVEAAPASSTTTFVQPASSSQTIIIEPADPQVVYVPSYNPTTVYGTWAYPSYPPVYYPPPPGYYIGTALAAGLAFGAGVAIIDSLWGDCDWGRGDIDIDVNRYNNINVNRRIDASQRKFVHNPIHRDGVPYRDNFNRQQNGLRLSGGEQRESLRGYDAQRTAERQKARQSLEKRGVQAPATSNRQARERAQAADREMRSTSQQRPRAQNNQQLRQQARQQQTARQGPRNNAFAGARQPSVTRQSINRGEASRQSSSRSQKASAGRQVQRPAHAPARGGARRR
>NZ_AP014862.1|WP_003448768.1|3382823_3383723_-|DUF2950-domain-containing-protein
MKVAYRVFLALWLAGSSLLAQAEVARFATPDAAATAFVDALGTEKADADKLAALLGDDWQDFIPTEGIERRDVEAFLTFYRQRHQFETVGERAHLVVGNDPWTLPIPLVRDGDGWYFDARAASEEIRLRRIGRNELSAIQAAEAYHDAQMDYAEVDRNGDGVLEYAQRFISSDGLHDGLYWPDEDGTDESPLGPLFGDEVQGDDWHGYHFRILTAQGPSAPGGAYDYRLGNAMSRGFALVAWPAQYGDSGVMSFMISHEGQIFQKDLGPESEAIAKAMTRFDPDSSWTEVRVRRVTAQQ
>NZ_AP014862.1|WP_003448769.1|3382227_3382797_+|hypothetical-protein
MTRATRFPRLGDFSERVQEVNASSPPGDLRELGRFRLAQANLLLDSLCAALTPESRTAGERCLKRVQDLLLDAYLMLALADQASRDDQALLKALLKALLKALQGPEGTGLPATERCRALPLAGWQLRHRDDVADGMAAAELSLALGAAASPWTALAEGRARKRGDRARSAFELGFLMHLYQRLMHAGAA
>NZ_AP014862.1|WP_003448770.1|3381943_3382231_+|hypothetical-protein
MHELKAFPFPTQPFQDVLFFNARACPTHLFETAQQRLNAVCDLLEILEMNEGSTPLNRESARLSSAIGLLLGDARALYEAAFDGVRSHPVAKAEP
>NZ_AP014862.1|WP_003448771.1|3380563_3380956_-|hypothetical-protein
MGILKLVILLLAAVAGGQAFAQQPWTPTDLSGQMVLARDGGGHGKHGARHYRGPRHGYGYYGNRHGYKPYYRHHHYYSHRPRFIVSPRYYGGIVVGPQPYYYRRYSSPRIVIQYYDPRLGIFIGTDLRDY
>NZ_AP014862.1|WP_003448772.1|3380186_3380468_+|peptidyl-prolyl-cis-trans-isomerase
MARATARHILVSSEAKCNELKAAIEAGADFAEVAKQHSTCPSSRDGGNLGSFGRGQMVKEFDTVVFSAPLNVVQGPVKTQFGYHLLEVTSRQD
>NZ_AP014862.1|WP_003448781.1|3377828_3379886_-|carbon-starvation-protein-A
MTQLATRIAWFAVALLGAFALGTIALRRGEAINALWIVTAATAIYLVAYRYYSLFIATKVMQLDASRATPAVLNNDGLDYVPTNKHILFGHHFAAIAGAGPLVGPVLAAQMGYLPGTLWLIAGVVLAGAVQDFMVLFLSTRRNGRSLGDMVREEMGRIPGTIALFGCFLIMIIILAVLALIVVKALAESPWGMFTVMATIPIAVFMGVYMRYIRPGRIGEISIIGVILLLASIWLGGLVAADPVWGPAFTFTGVQITWMLIGYGFVAAVLPVWLILAPRDYLSTFLKIGTILGLAIGILVLAPELKMPALTQFTDGTGPVWKGTLFPFLFITIACGAVSGFHALISSGTTPKLLANETHARYIGYGGMLMESFVAIMAMVAASVIEPGVYFAMNSPAALVGSDVNTVAATISSWGFAVTPEVLQQTAVDIGEHSILARAGGAPTLAVGIAQILHQVLPGENTMAFWYHFAILFEALFILTAVDAGTRAGRFMLQDLLGNFVPALKKTESWTANVIATAGCVALWGWLLYQGVIDPLGGINTLWPLFGISNQMLAGIALMLGCVVLIRMKRQRYVWVTLVPATWLLICTTTAGLIKLLDPNPAVGFLALAKKYSDAAAAGQILAPAKDMGQMQHVIFNAYTNAALTVLFLFVVLSILFYAIKVGRAAWTRSERTDKETPFQPIPDA
>NZ_AP014862.1|WP_003448783.1|3377611_3377815_-|YbdD/YjiX-family-protein
MFNDLSRMGKYLGQAARMLVGMPDYDTYVEHMRNKHPDQPVMTYEAFFRERQDARYGGGKGRPIRCC
>NZ_AP014862.1|WP_003448784.1|3376428_3377403_-|GTPase
MSAHLPIPVTVLTGFLGAGKTTLLKHILKAEHGLKIAVIENEFSETPIDGQLLGDEPVQVMTLANGCVCCSIHVELEKALFLLLERLDAGELAFDRLVIECTGLADPAPVAQTFFADEELCQRYVLDGIITLVDAANAERHLQETIAQAQVGFADRLLVSKRDLVDDVQFEALSERLSRINRRAPVRVVDHGRIDLSELLDVRGFNLNADVAPAMTLRPLKPAGTPDRIGTLVLKSDRALDMERLSAFMEGLLESHGNSLLRYKGVLCVEGESRRLVFQGVLRLYGFDWDSEWQPHEARESVMVFIGDQLPEEAIRAGFEAAQV
>NZ_AP014862.1|WP_096368038.1|3375105_3376371_+|OprD-family-porin
MLRHTRLYSSLLLATGTAFGVATPVHADFIKDSKASLELRNFYFNRDFRQDNAPQAKAEEWAQGFLLRYESGYTEGTVGVGVDAIGLLGVKLDSSPDRSGTALLKRDRETGRAQDEYGEVGLTAKLRASKSVLKVGTLLPKLPVVQYNDSRLLPQTFQGGHLNSMEIDGLTFDGGQLKQVNQRDSSDYEDMTLTTGAARAITVRSGTTSDAFNFGGASYKWNDSLTTGYHYGELDDLYKQHVLSAVHLLPLGDKQSLKSDIRYARSTDDGASNVDNKAFGALFTYALGGHAFGLGYQAMSGDTGFAYINGTDPFLVNYVQIGDFANKDEKSWQARYDFNFASVGIPGLTFMTRYLTGDNVDRGAAASEGKEWERNMDIAYVFQEGPLKNFGVKWRNATVRSNFGSDIDENRLILSYVLPLW
>NZ_AP014862.1|WP_003448765.1|3385445_3386942_-|TolC-family-protein
MSKAAKFFTISMLALAVTGCAVTSQPIDRSVSEQRAQRDLATMFKDQEPLSGPLTLHDAMARAVKYNLEARLKVMEEALAKRQVDLASFDMLPRIAMEAGYAGRSNVSASSSQSVLTNTQSLEPSTSQDRDRGVADLTMVWNVLDFGVSYVSAKQQADQRLIVQERRRKVVHTIIQDVRSAYWRAVAADRLLKQIDGLMARVDDARNNSERMTQQRIGDPVQALGYQRALIEATRQLEEQRRALSLAKTELAALINLPLNTDFTLVADDSYQVPELKVDFNRLEEEALASRPELKEQDYQARISAAETRKAMLRLLPGLEFSAGGHYDSNSFLVNQSWADYGVKVTWNLFNVLSAPAAIDVAKAGESVAAARRQAISMAILAQLYVARANYNEAQRQFQTSQELASLDGQIAEQLRNRYSTQSIGELDLIQGELNTLQAQLKRDLSYAELRNAYAQLFVSAGLDPLPASLPDDQLATIASALETSESRWASGDVGALK
>NZ_AP014862.1|WP_096368039.1|3386993_3398426_-|DUF4347-domain-containing-protein
MFRHLLKHSVARKINQPGAVRSPLAVSLEPRMMFDGAVAATVADTAASQPTDAPAAQDGPAADSGSQEGLAAAPTSGTLDQRQELVFVDGSVKDYQQLVAALKPGTEVVVLDGSKDGLQQIADYLDGRSGIDAIHVISHGSEGQVLLGTGVLDMGSLQEHADALSSIGEALSAEGDILLYGCDVAKGSGQALIQQIASLTAADVAASSDATGSLDKGGDWSLEAQVGSLETTALWRDAAPDYDALLATVSLNQSWLNNGTDDWSFSDNQAAGDLEATADSIFLNVNSSAFSSPSVEFTISSISGTAFNLDSISVRPFNDFNDFQFEIYPTNNYAAKVTSVLISNQPNQTIDINTGLLNITSFTIRFVDTGTFQGSPANMDFLSFTTSPANVAPTIANLGSQVAWAGVGGTVALDAGGDADLGDDELEALNDWTGASLVIQRDSAAVGSDVFGFDTSGALFTVSGNELKTGATTFATFTNTGGVLTISFTGTSATTTLVNDVAQRITYRNDTPAGDANIRYTLNDGDGGSATANVTVASDTIYVTNTTDTATIDASNGVSFSEAIAIAQADGTGSQTLIIDGSLANQTVSASSATSLGESLTLNLDSASGVTLSGGTLTLGGGVTLSVTNGSGDSATLATTLAGTGALTKAGAGNLTLSGSGNSYSGATSISAGTLTVSGGDAISGSSSVSVSAGATLALSGNESIGNLSGAGSINLGSSTLTTTQTADTTFSGGISGTGGLTVNQTGASTFALTLSGTNTYSGPTITSNFGWLKLDGDASLSGSGALRVNGNSVVTLLSDQTVGSLASNSTTARIQLGAFTLSAGGDNTSTTASGVISGTGSLVKQGSGTLTLGGTNTYTGTTTVSGGTLSIAGDGNLGSGTLSLGTGSTLDISGAGTIDNAIALNGDASITNANAVTLSGLVSGSAELLKGGAGNLTLSNTGNSAQGWGLNLTSGSVTIGAATHLGAGTLTLAGGSFNVDTASTVTLNQQVVVSGPVSVNYLTGSSILTFAGAMSGSGALALNAGGNSIYLNNASGLSGDLAIATASGGIVAAMTNGTFGSGQITLANNSRLGVAGEGRTFANDIVLLGNATLIAGASTGSGIQTLSGTISESGATGNLTLSAISTASLALSGSNSYSGTTTFSSGRVQVSSDANLGSGNLILGGGTLVATSATTLDNNLTVSSGSTVETAAALTLSGVISGSGALTKTGTSSLTLTGTETHTGTTTVSAGTLVVNGSTAGATLVSSGGTLAGTGTLGGNVSVQSGGTLAPGIAGVNNGVGTLTINGGLTLAAGSTLAVEINGTTAGTGHDQVVVNGAVSLGSATLDASHGYAPGQGDSYRIIDNDVADAVTGSFSGLAEGGTVAASGNGTVLTASYLGGTGNDVTLTAPINAAPVVSNLDGDSVTFTQGSGAILLDFGTNATVTDGDSADFAGGNVTVSILANGVSGEDVLGIANQGTGAGQIGLSGSDVTYQGTVIGTWTGGSAGADLVISLNANATAAAVQALVRNLNYSNSNATNGIDQADRTLRVTLNDGDGGTSSSADITVSVVETVAPTTVSIQVDDTALAAGETTTVTITFSEAVTGLAIGDFTLANGTLSNLATGDGGITWTATLTPAAGVEAAGNLITLDNSGYTDLAGNAGSGTTDSNSYAVDTLRPTASIVVADSALAAGETSTVTITFSEAVTGLGLGDFTVANGTLSNLATQDNIVWTATFTPSAGVESTTNLISLDNTGVTDVAGNAGSGSTSSGNYQIDTLRPTLVSIDVDDTVLSVGETATVTLVFSEAVTGLDAGDFTVQNGALSNFSSSDGGVTWTATLTPSAGVADPNNVLTLDNTGYLDAAGNTGSGTSDSANFQVDTEAPVNAVPGAQTTTTVTPLVFSSGNGNAITVSDGGSLTVVVSAASGTLTAATGGTAGISNNGSGSVTITGSAAEVNAALEGLVFTPSSAGAVSITVQTTDGAGNSDSDSVVVTVDNATLVVTSSLDTGADESTGASFAADQADGGGLSIREALHWARAGDSITFDLDAGALGNQGGAITLNGNQLLINYSNLTIDGDLNDDGVADVTLSANNASRVLQVNASLSGVELSGLNLTQGSTSGGGAGLSIGFGSSLTLRDSSVTDSTESGLGGGGIYGSGVALTLINTTVSGNTSTSFGGGLRIVGNGTLNLLNSTVSGNSTNGAGAHGGGIQYAGTGLTIVNSTISGNAALGAGSEGGGLRITTGPAQIYNTTIVGNAASGTGGGVSANGTDTLVNTLVAGNTAGAGATAGAAGSPLATGGSANDVSGTVETATHSYFGSSVTLTTNNGSLNNQGTGSLLLGNLAFNNGGTVQTHKPQVGSALLEAGSNADLPLDSFDLDGDGNTSEALPIDSNGASRVAGTVDIGAVEANAAPVLGNLDGGGSFTEGGPAVVIDGDASVSDADLDALDGGNGDYHGASVVLVRNGGADADDLFGFLDGNGISLVGGNLVKNGQVIGSFDTSVPGQLTLTFTHANGQTPGTADVNQILQQLTYANGSEDPGASVTLDWTFADGQGATSGGSTLVSLVAVNDAPTASASGGNATYTENGSAVDLFSGVSLGTVEAGQSITGLTFSVSGLIDGASEILSIDGTEIALVNGASGTTSVNGIGYSVSLVGGTATITLTSAGLATATAQGVVDGMTYRNGSEVPSEGTRTLTLTSVRDSGGTGNGGVDSATTAIAASVAVVAVNDAPVITAPGSIAVTEDLSQALTGISFSDVDAGSGSVIASFSVTGGTLSAFSGSGVTVAGSGSASLTLTGTVADINAFIAANGLSFTGGANANGNVTLGVGINDGGNIGSGGALSDNASVTLAVTAVNDAPVNSLPAGQHVAQDGSLVFNAGNGNLISIADVDAGAGNLQVSLTASNGLITLGSQSGLSFITGDGVADGVLVFTGSLADINAALDGLQFTPTAGFNGSASIQLSTSDLGNAGSGGAQLDSDTLAITVDPINPVITGIAVTNPDGAYKVGDVIDITLTFDQSVIVDTTGGVPALLLETGLVDRNAVYLSGSGSNSLTFRYIVQAGDVSADLDYQSSGALSLNGGSIRNASSSDAILTLPATAGADSIAGQHDIVIDGVAPGVTSVGVPVGVPYNAGDTLTFVVNASEVVLVNGTPRLALDIGGTTVFADYVAGSGTTTLVFQYSVQAGLNDADGIAVTGLVANGGSLQDATGNAMNLALNNVGNTSGVIVDTQAPTATILVADPSLSIGETSSVTITFSEAVSGLDLADFSVENGVLSNLSSTDGGMTWTATLTPTAGIADTSNLITLTNAGVQDAAGNIGIGSTASNLYAIDGVRPTATIQVADNALSAGETSSVTITFSEVVSGLDLADFSVENGVLSNLSSTDGGMTWTATLTPTAGIADTSNLITLNNAGVQDAAGNTGTGSTASNLYAIDTRAPTVTSVGVPVGVPYNAGDTLTFVVNASEAVLVNGTPRLALDIGGTTVFADYVAGSGTATLVFQYSVQAGLNDADGIAVTGLVANGGSLRDAAGNAMNLALNNVGSTAGVVVDTTAPAPTAIITLDPSPTNAGSVRYTLTFSEDVSGVDLSDFSLVTTGNATGSLGSLVQVDGRTYQITITGVAGSGRLALALNGSGTGVSDMAGNGLVAGLVGQSYSLAQSDGDPEFRSNPPVVPPPEPNVPTESTLPSPPPPPFTSPLLPPPLFEVPTLGSGIPTLGSIFINNGALAPSFIAQVFASGDSGGGDGSGSGFLGFGGGDAGVFGTSSLSGLFNKEMPQESGEIQLQWRNSGGSGQGLQGIFGAPTLGQQLQEIRESEQRQVRDLAWALGQIPDNAPQA
>NZ_AP014862.1|WP_004420008.1|3398725_3399313_+|Microcystin-dependent-protein
MSDQSYLGSISGWAPNFAPRGWAFCQGQTLSISQYSALFSLLGTVYGGNGQTTFNLPNLQGRVPVGAGQSPGTSSYTLGEMAGTETVTLTSAQMPAHTHAATATATASLPASTAAATLATPAADSVLAAANGASGRTPVDVKIYAPAPGSVNIPLTSAATVNVQANGGNQPFSILQPFTVINYIICMEGIFPSRN
>NZ_AP014862.1|WP_004420010.1|3399331_3399904_+|Microcystin-dependent-protein
MDIESYLGVIAPFAGNFAPRNWMTCGGQLLPIQQNQALFSLLGVTYGGNGVQTFGLPNLNGRAAVGQSSQHLLGQSGGTENVTLTLANLPTHTHGATAEATVVLQASSTAAAAGQPAADSTLAQSQGFEGRTPLTVQIYAPAPGSIELPAQAGLQVELGISGQNLPTGVVQPFLALTQCICTQGVYPSRN
>NZ_AP014862.1|WP_051050675.1|3399923_3400226_-|hypothetical-protein
MFIETQGLTATMFASEVGQVFTAETVPEPVQLTLLKLVEGRAAAGGFRTPFSLIFTTPMSVLLLESQYRLRSASGREYLLHLSPMVSPLDGQRHYQAQFN
>NZ_AP014862.1|WP_004420016.1|3400293_3400794_+|GNAT-family-N-acetyltransferase
MTEIKTAGTPARLRRRAANTGDEPWLRQFFALLRGLDPALIALCPALLEQQWQLQQCAFASHYPGARTDLILLEGDPIGLVTLHEGATAIRILELGLAPRHRGQGLGERLLAEIIREADARDQAVELAVMRHNPALRLYQRLGFLVLPGDEDAVQLQMRRPAHHAD
>NZ_AP014862.1|WP_004420017.1|3400781_3401762_-|sulfotransferase-family-protein
MASVKPELDFRGWRPIRTWRDEAGWRVDWCWFGDQRLTQPFFRDDVEQALRLPFNQAFRRETGLDALLDWQVASPGLAPTALIFHASRCGSTLMAQMLAGLESHLVLSEPPPLDALLRAHYRDGLAGDAQRAALVAVLSALGQAPGSRARALVVKLDAWNIFELPLVLRCFPDTPWIFLYRDPLEIAASHLRMAGMHMIPGQLQGSPLNEPDEAPAPREVYIARRLGRLLQQAATCCRTHGGLLVEYPELPQALAGRLRLPLGLASEQVELALAASARNAKRPAETFIDDSRQKREGAPAALRDAVERWALEPYLELQGLRQAQSA
>NZ_AP014862.1|WP_004420021.1|3401749_3402550_-|aspartyl/asparaginyl-beta-hydroxylase
MNPEALPRCSRLPLAIPLPSLLDALARVSAGAWQHHFNTGYYEGDWSGVALIAPEDAPLPLAPGLGAPVRTGWWQREAAWNELLDLFQARVRSARLLRLGAGARIHEHCDPDLGQPGGDLRLHIPLLSPAGVEFLVDGLQVPMQPGECWFIDLSRPHRVDNPGPGARVHLVLDCQPDPWLLDLVRDGLEDTPALRPGRAGQAFAAFRQRVERDAELAARLRTLTDARDFPGAVVRLGMGLGLAFSEAEVRSAMRQGKQAWSDQWRV
>NZ_AP014862.1|WP_004420025.1|3402578_3404672_-|biotin/lipoyl-binding-protein
MLPALRPDLQLSPAAPGLDGAPQWTLADPLRGRYFKLGAAAVRLLRHWALGDPQRVLAAANAESGLPLGEVELEEMLRFLGSHDLIAALDDQQRASYALKAGSQRQGLWKRVLHQYLFFRIPLWRPDAFLNRAWPLLERHGPWMLRWGLPLVLALGLFLVARDWERFLATFPHLFSLGGALAFGVALTFAKLCHEFGHAFMAKRAGCRVQSMGLAFMVLLPMFYTDVSDAWRVRDRRSRLLIGAGGVLAELVLAVLALLAWSLLPDGPLRTSAFMLASATWITTLIINLNPFMRFDGYFLISDFWGVDNLQNRAFALCRWRLREALFGYGEPAPEPWPAAMQRRLLVWGYGSWLWRAVLFFGIALAVYHLFFKVLGIFLMLVELLWFIGLPIWREMKEWWQRRDQADPRKVMFTGLALGATLLALVVPWRGSVDVPALLEAARVSALHAPVAARLKAVHVRDGQAVEAGDLLLELDAPDLDSRQAIVRREIQILQLQLRRQSARSETAADAGILEQRLAEAVAEYRGLAAQRERLQLRAPQAGVVRDLQPDLTAGRWLNPAETLARVVEPGLRLRGYLAEESLWRVKVGSEGRFIADDPARPAMAVRLDEVDATGVAYLELEALGSDHQGPIAVRRDEQRRAEPVQAQYGVRLSLLEPGIRTAQPLRGVVVLDGEGQSWLGAAWRRLAALGVRESGF
>NZ_AP014862.1|WP_004420028.1|3404671_3405991_-|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MSAAPPGAAERVFAQFLGLEKQARQAGSTEQLGFSMVNDGQSLFGFRHAALLIAGKVQALTGISVVEPNAPFVAFVERAAGRLLDLGLLGEARPVDPAVLDDQARADWQDLSAAHAYWLPLKDRQGAPFGGLWLARDQGFTEAEQALLAQLADTYAHAWLALQPRKPWRLRWPGKKRLAVAAALALVLLVPVRQSVLAPAEVVPLGGRVVAAPLDGVIAEFLVKPNQGVAAGELLVRFDATGLKAQADVAERALGVAEAELKANTQRAFADAESSARIDLLAARVEQKRAERDYARQLLARSEVRAERAGIAVFADAERLTGKPVQTGERLMQIADPSQAELRIELPVSDAIALEPGAEVALFLDSDPLNRHEARLERSAYEAQATAAGQLAYRLDARFVDKPPRIGLRGTAKLFGGRAPLAYYLLRRPLAAARQSLGF

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Crispr_ID: NZ_AP014862_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP014862_5

3471576-3471675

Orphan

Consensus_repeat	Method
CGTAGGAGCCGGCTTGCCGGCGAATG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP014862_5

>merge|NZ_AP014862|5|3471576-3471675|CRISPRCasFinder
CGTAGGAGCCGGCTTGCCGGCGAATGGCACAGACCTGTTCGCGAGCAAGCTCGCTCCTACCGGAGCGGCAGGTCCGTAGGAGCCGGCTTGCCGGCGAATG

>NZ_AP014862|5|5|3471576-3471675|CRISPRCasFinder
CGTAGGAGCCGGCTTGCCGGCGAATG	GCACAGACCTGTTCGCGAGCAAGCTCGCTCCTACCGGAGCGGCAGGTC
CGTAGGAGCCGGCTTGCCGGCGAATG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014862.1\|WP_004420765.1\|3464509_3465913_-\|APC-family-permease	unknown	unknown	gnl\|CDD\|223605
NZ_AP014862.1\|WP_004420742.1\|3476610_3477810_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182964
NZ_AP014862.1\|WP_004420747.1\|3474208_3475369_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883
NZ_AP014862.1\|WP_004420738.1\|3479189_3479720_-\|TRAP-transporter-small-permease	unknown	unknown	gnl\|CDD\|377284
NZ_AP014862.1\|WP_004420770.1\|3462323_3463307_+\|catabolite-repressor/activator	unknown	unknown	gnl\|CDD\|236897
NZ_AP014862.1\|WP_004420740.1\|3477870_3479193_-\|TRAP-transporter-large-permease	unknown	unknown	gnl\|CDD\|224509
NZ_AP014862.1\|WP_004420732.1\|3482267_3482927_+\|5-oxopent-3-ene-1,2,5-tricarboxylate-decarboxylase	unknown	unknown	gnl\|CDD\|131358
NZ_AP014862.1\|WP_004420756.1\|3470778_3471561_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|379263
NZ_AP014862.1\|WP_004420744.1\|3475384_3476506_+\|class-II-histone-deacetylase	unknown	unknown	gnl\|CDD\|212521
NZ_AP014862.1\|WP_004420767.1\|3463395_3464346_-\|transcriptional-regulator-FeaR	unknown	unknown	gnl\|CDD\|236612
NZ_AP014862.1\|WP_051050692.1\|3479726_3480749_-\|TRAP-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270383
NZ_AP014862.1\|WP_004420771.1\|3459257_3462119_-\|phosphoenolpyruvate--protein-phosphotransferase	unknown	unknown	gnl\|CDD\|224006
NZ_AP014862.1\|WP_004420764.1\|3465951_3467439_-\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143410
NZ_AP014862.1\|WP_004420759.1\|3469194_3469854_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197715
NZ_AP014862.1\|WP_004420750.1\|3473202_3474171_+\|LuxR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197715
NZ_AP014862.1\|WP_004420760.1\|3467678_3469016_+\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|168967
NZ_AP014862.1\|WP_004420753.1\|3471824_3473072_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NZ_AP014862.1\|WP_004420757.1\|3469963_3470782_+\|molybdenum-cofactor-biosynthesis-F-family-protein	unknown	unknown	gnl\|CDD\|375179
NZ_AP014862.1\|WP_004420773.1\|3458301_3459258_-\|1-phosphofructokinase	unknown	unknown	gnl\|CDD\|274804
NZ_AP014862.1\|WP_004420735.1\|3481183_3482101_-\|4-hydroxyphenylacetate-catabolism-regulatory-protein-HpaA	unknown	unknown	gnl\|CDD\|131350

Protein	Function_ID	Function_description	E-value
NZ_AP014862.1\|WP_004420765.1\|3464509_3465913_-\|APC-family-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	5.60623e-35
NZ_AP014862.1\|WP_004420742.1\|3476610_3477810_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182964	PRK11102, PRK11102, Bcr/CflA family multidrug efflux MFS transporter.	1.75501e-105
NZ_AP014862.1\|WP_004420747.1\|3474208_3475369_+\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.53549e-13
NZ_AP014862.1\|WP_004420738.1\|3479189_3479720_-\|TRAP-transporter-small-permease	gnl\|CDD\|377284	pfam04290, DctQ, Tripartite ATP-independent periplasmic transporters, DctQ component. The function of the members of this family is unknown, but DctQ homologs are invariably found in the tripartite ATP-independent periplasmic transporters.	3.55754e-17
NZ_AP014862.1\|WP_004420770.1\|3462323_3463307_+\|catabolite-repressor/activator	gnl\|CDD\|236897	PRK11303, PRK11303, catabolite repressor/activator.	0
NZ_AP014862.1\|WP_004420740.1\|3477870_3479193_-\|TRAP-transporter-large-permease	gnl\|CDD\|224509	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism].	1.84501e-100
NZ_AP014862.1\|WP_004420732.1\|3482267_3482927_+\|5-oxopent-3-ene-1,2,5-tricarboxylate-decarboxylase	gnl\|CDD\|131358	TIGR02305, HpaG-N-term, 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit. This model represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation. In E. coli and some other species this enzyme is encoded by a single polypeptide containing both this domain and the closely related C-terminal domain (TIGR02303). In other species such as Pasteurella multocida these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED).	4.36091e-110
NZ_AP014862.1\|WP_004420756.1\|3470778_3471561_+\|SDR-family-oxidoreductase	gnl\|CDD\|379263	pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase.	2.20947e-68
NZ_AP014862.1\|WP_004420744.1\|3475384_3476506_+\|class-II-histone-deacetylase	gnl\|CDD\|212521	cd09996, HDAC_classII_1, Histone deacetylases and histone-like deacetylases, classII. This subfamily includes bacterial as well as eukaryotic Class II histone deacetylase (HDAC) and related proteins. Deacetylases of class II are Zn-dependent enzymes that catalyze hydrolysis of N(6)-acetyl-lysine residues of histones (EC 3.5.1.98) and possibly other proteins to yield deacetylated histones/other proteins. Included in this family is a bacterial HDAC-like amidohydrolase (Bordetella/Alcaligenes species FB18817, denoted as FB188 HDAH) shown to be most similar in sequence and function to class II HDAC6 domain 3 or b (HDAC6b). FB188 HDAH is able to remove the acetyl moiety from acetylated histones, and can be inhibited by common HDAC inhibitors such as SAHA (suberoylanilide hydroxamic acid) as well as class II-specific but not class I specific inhibitors.	0
NZ_AP014862.1\|WP_004420767.1\|3463395_3464346_-\|transcriptional-regulator-FeaR	gnl\|CDD\|236612	PRK09685, PRK09685, DNA-binding transcriptional activator FeaR; Provisional.	3.25298e-133
NZ_AP014862.1\|WP_051050692.1\|3479726_3480749_-\|TRAP-transporter-substrate-binding-protein	gnl\|CDD\|270383	cd13665, PBP2_TRAP_Dctp3_4, Periplasmic substrate-binding component of TRAP-type C4-dicarboxylate transport system DctP3 and DctP4; the type 2 periplasmic-binding protein fold. This group includes uncharacterized DctP3 and DctP 4 subfamilies of TRAP Transporters specific to C4-dicarboxylates such as succinate, malate and fumarate. TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. This CD also included some eukaryotic homologs that have not been functionally characterized. TRAP transporters are comprised of a periplasmic substrate-binding protein (SBP; often called the P subunit) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process (the M subunit) and a smaller membrane of unknown function (the Q subunit). The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	6.12363e-122
NZ_AP014862.1\|WP_004420771.1\|3459257_3462119_-\|phosphoenolpyruvate--protein-phosphotransferase	gnl\|CDD\|224006	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism].	0
NZ_AP014862.1\|WP_004420764.1\|3465951_3467439_-\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143410	cd07091, ALDH_F1-2_Ald2-like, ALDH subfamily: ALDH families 1and 2, including 10-formyltetrahydrofolate dehydrogenase, NAD+-dependent retinal dehydrogenase 1 and related proteins. ALDH subfamily which includes the NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36), also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1), in humans, a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism. 10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1), in humans, a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the conversion of 10-formyltetrahydrofolate to tetrahydrofolate and CO2. Also included in this subfamily is the Arabidosis aldehyde dehydrogenase family 2 members B4 and B7 (EC=1.2.1.3), which are mitochondrial, homotetramers that oxidize acetaldehyde and glycolaldehyde, as well as, the Arabidosis cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme involved in the oxidation of sinapalehyde and coniferaldehyde. Also included is the AldA aldehyde dehydrogenase of Aspergillus nidulans (locus AN0554), the aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5) of Saccharomyces cerevisiae, and other similar sequences.	0
NZ_AP014862.1\|WP_004420759.1\|3469194_3469854_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	4.36527e-17
NZ_AP014862.1\|WP_004420750.1\|3473202_3474171_+\|LuxR-family-transcriptional-regulator	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	5.96506e-14
NZ_AP014862.1\|WP_004420760.1\|3467678_3469016_+\|aspartate-aminotransferase-family-protein	gnl\|CDD\|168967	PRK07481, PRK07481, hypothetical protein; Provisional.	0
NZ_AP014862.1\|WP_004420753.1\|3471824_3473072_+\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.22151e-71
NZ_AP014862.1\|WP_004420757.1\|3469963_3470782_+\|molybdenum-cofactor-biosynthesis-F-family-protein	gnl\|CDD\|375179	pfam17409, MoaF_C, MoaF C-terminal domain. MoaF protein is essential for the production of the monoamine-inducible 30kDa protein in Klebsiella. It is necessary for reconstituting organoautotrophic growth in Ralstonia eutropha. It is conserved in Proteobacteria and some lower eukaryotes. The operon regulating the Moa genes is responsible for molybdenum cofactor biosynthesis. This entry corresponds to the C-terminal domain.	4.99172e-66
NZ_AP014862.1\|WP_004420773.1\|3458301_3459258_-\|1-phosphofructokinase	gnl\|CDD\|274804	TIGR03828, pfkB, 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).	7.06083e-119
NZ_AP014862.1\|WP_004420735.1\|3481183_3482101_-\|4-hydroxyphenylacetate-catabolism-regulatory-protein-HpaA	gnl\|CDD\|131350	TIGR02297, AraC-type_DNA-binding_domain-containing_protein, 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.	1.96493e-147

>NZ_AP014862.1|WP_004420756.1|3470778_3471561_+|SDR-family-oxidoreductase
MKSRTVLITGAGTGIGAACARRLASEGANLVLMGRRVAPLEAVAAETGGLVLAADVASSADWPRCIAAIVERFGGLDGVIANAGGHGLGSATDTGDDDWQAAMRANLDSAFHTARACLPLLVQRRGSMVLMASIAALAAGEGVCGYTTAKHALIGLTRSLARDYGPQGVRVNAVSPGWVRTPMADAEMQPLMERHGESLDAAYARVTAEVPLRRPASPEEIASVCRFLLGDESAIVTGINLVADGGSSIVDVPTLAFGRG
>NZ_AP014862.1|WP_004420757.1|3469963_3470782_+|molybdenum-cofactor-biosynthesis-F-family-protein
MTTQPEWITVGALADGFAPEAFILPSLADLAGRTFTLHFANGWQIEHRFDARRVNWALADGSARGEADYRATSVREGLYLVDFLKEEDGRPVSVSLVLDIANGAFTAVLGRMPSEAECRGDLFSKALAGGELTSVRADFLHGSLDRPWQDGACPHAPTRELVGLRNLYRYSPTEVYEHIYLNENFYSWQCLKGVEQGLADTDRCHTIRIADQLYLFVWREKIVPTLGVILIDLQKHRSDGKICGYAGGDFGQLSNFPVSSHCSILNHTDYPQ
>NZ_AP014862.1|WP_004420759.1|3469194_3469854_+|helix-turn-helix-transcriptional-regulator
MHDNFGLQCLQAFSRVVPASCLVFYRVDRNLRARDFQLLHMDRRTHRDYLAHYRDFDPLQPALCRDERQPVIPLRQAMARQGGEARRIYQGFLARHGIRDVVEVIAHDRQRPLVGISLLRTGPNPAFDARELQCLDGLRGLLDLAVRQWPVEQEDPLPTLAALTPREQQLALLLREGLSNKDLARELDLGLATVKTHLIHLFRKTGARSRTELVRRLFP
>NZ_AP014862.1|WP_004420760.1|3467678_3469016_+|aspartate-aminotransferase-family-protein
MSTKDNAFWHPMLHPNEMKQREPIRIVRGEGCYVFDDKGNRLVDGVAGLWNVNVGHGRKEIKAAISAQLDELEYFQLFDGISHPRAEELAARVIGMLEPEGMRRVAFSSGGSDAIETALKLARQYWKLQGQADRTKFISLRQGYHGTHFGGASINGNTVFRRNYEPLLPGCFHIDTPWLYRNPYSQDPEELGQICADLLEREIQFQSPDTVAAFIAEPIQGAGGVIVPPANYWPLIRKVCDKYGVLLIADEIVTGFGRSGSLFGSRLWGVKPDIMCLAKGISSGYIPLGATTVNERIEQAFAANGNFTGAIMHGYTYSGHPVACAAALANLDIVEQENLPANAAKQGEHLLKSLASFPERFAAVGEVRGKGLMVALDLVSDKATREPIDPLGGYANRVAEIARANGVMVRPVGTKIILSPPLVIEREQIDTLVNALAIGFQEARY
>NZ_AP014862.1|WP_004420764.1|3465951_3467439_-|aldehyde-dehydrogenase-family-protein
MSIALDPRVAAFVQARHGLLIDGQSRPALSGSEMPVHDPSTGEVLARVAVAAPADVDLAVAAARRAFEGSWASQRPADRERLLLKLADLLEAHGEELAQLETLNNGKSINLSRAIEVGAGVEYVRYMAGWATKIEGKSLDLSIGAIPGGKFRAYTVPEPVGVVGAIVPWNFPLLMALWKVVPALACGCTLVLKPADETPLTALRLGQLCLEAGIPAGVVNIVTGVGAEAGAALAAHPGIDKLAFTGSTQVGKLIGHAAVENMTRFTLELGGKSPVIVLDDAALDQAAAGAAGAVFFNNGQVCTAGSRLYVQRKSFDQVLERLHGIAGSLSIGPGLDPTAQINPLISAKQQRRVLAMVDGGRAQGASVICGGEAHGERGFYVKPTVIAGVRPDMDVVREEIFGPVLVATAFDDLDEVVGLANDSPYGLAASIWSNDLKQVMGLIPRLKAGTVWVNAHNLLDPSMPFGGFKQSGIGREMGHAAIEAFTENKSVCIAY
>NZ_AP014862.1|WP_004420765.1|3464509_3465913_-|APC-family-permease
MNKTSTNDLDLTATAGSPARSSLKSLGFATMIAICIGVVVVQGAMMSALQGMGFGGLGFLAAFAVAFILAQCYVQSFAELSLMFPQAGTLATYTQKAIGHFPAIVAVFAGYVIVAMFGLSAELLLVDAILDKLFPGVFPATLVPLAILALLTVLNILGTDVFARLQNVFTFAMVVALLLVGVTAVSGLGEAPAMGFVPDVDWGWGGVLDGSFIGLVALAMWLLVGAEFICPLIGEVRQPERNIPRSMMLSLTITFTLFVIFCIGASRYLSVETLTTSPLPYLDYVFAVFGKGAVIIATVMALTATCSTVNTVLAAVPRMLCGMAENGQAFPQMKVLHKRFGTPWMAIVFVAIIIALPFLLMGPDSIITLLIAASTSWLLAYIIAHVNVMVLRRRHPDLPRPYKSAFYPLPQVVGILGMGYIALNNSPSPEMTQTVYLLTGAVLAVVSLIALLWVKLVMKRKLFEPDI
>NZ_AP014862.1|WP_004420767.1|3463395_3464346_-|transcriptional-regulator-FeaR
MLSQVSSPRDFDAWLRALQGVCGRFESRPPQGHGLFIGEIGRQDLSGLEVAQIRTNAGVISRQRTSIDHDDDRHCFLIIQRAGRAQLKQEGDCLELGPGEMALMDSARSCEIVPHGLIEHASFHLARDEVCRVMPEGRPTFGKLSQQCASGRVLRTLVEQICGGELDGCAGMEEGEALQEALIALLAPSLRQQSVAALSELEGSHNAGLRVLAQQLIDQSLSEPGLTPLSLARQLNISVRQLYRLFEEQGDSVCRFIQRARLKRSAADLSNPRLRNESITDIAFRWGFTDSAHFSRTFKKHFDQSPRDYRASAMAG
>NZ_AP014862.1|WP_004420770.1|3462323_3463307_+|catabolite-repressor/activator
MKLSDIARLAGVSVTTASYVINGKAEQKRISPATVERVQAVVDEHGFKPNPQAAGLRSRQTRTLGFILPDLENPSYARLAKLLEQGARARGYQLLMASSDDEPESERQLLRLFRARRCDALIVASCLPEDDDSLEQLLDEGLPVIALDRVRNPERFCAVVSDDREAARELTRSLLDPVPKRIALLGARPELPTSAARSAGFHDALAGLDTEVVELHGEAFSRDCGRRLMDELLARKGPLPDVLITTAYVLLAGVLDALRERGDWPGDLRVGTFGDTQLLDFLPLPVNSMYQQHGLIAEQVLALALAAVEQQRYEPGVRPVARRLKER
>NZ_AP014862.1|WP_004420771.1|3459257_3462119_-|phosphoenolpyruvate--protein-phosphotransferase
MLELTAGQISMGLEAADKATALRMLAERLEGDGLVAPGYLKGLQDREAQGATYLGQGIAIPHGTPATRDLVFTTGVRLMQFPEGVDWGDGQMVYLAIGIAAKSDEHLRLLQILTRALGEADLGAELRRAESPEQILQLLQSAPQELALDDQLIGLGVTVEDYDELVLQGARLLRRAECVGGAFAASLLQGEPLPLGDGLWWLHSDQVVQRPGLAYLTPDKPLRYLDQPLNGLFCLASLGDAHLALLERLCGLLIEGRGRELARATQRRAVLEALGGESQPDWPSLRLPLANAHGLHARPAKELVQLAKGFDGEIRVRVADSGAAAVSAKSLSKLLSLGIRRGQVLEIVAEPAIADAALPALRAAIEAGLGEEVEPLPLEAPARVEDEPQALPVSAPEAGSQVQAVPAAPGIALGPAHIHLRQELEYPLRGESPGFERERLLLAIAEVRGEIEALVLRSEAKAIREIFITHLEMLADPDLGDEVDTRLKQGESAPAAWMSVIESAAAQQESLQDALLAERAADLRDIGRRVLAQLCGVQDAPEPDEPYILVMDEMAPSDVARLDRDRVAGILTARGGATSHSAIVARALGIPALVGAGAGVLLLAPRTSLLLDGQRGRLVVAPDAAQLARAREEQEGRKRRLALADAHKGEPAVTRDGHRVEVCANLGDSAATAKAMAQGAEGVGLLRTEFIFMAHPQAPDLATQEAEYRRVFDALDGRPLVARTLDVGGDKPLPYWPVPEEENPFLGVRGVRLTLQRPHLMETQLRALMRASDGRPLRIMFPMVGSIDEWRQSRDLALRVAEEIPQADLQLGIMVEVPSAALIAPALAREVDFFSVGTNDLTQYTLAIDRGHPTLSAQADGLHPAVLQLIDLTVRAAHAQGKWVGVCGELAGDPLAVPLLVGLGVDELSLSASGIAEIKARVREFSLASARELAQSALALDSAAAVRELAERF
>NZ_AP014862.1|WP_004420773.1|3458301_3459258_-|1-phosphofructokinase
MARILTLTLNPALDLTLRLERLEPGQVNRSLEQASHAAGKGLNVAQVLADLGHGLTVAGFLGADNAEAFEALFARRGFVDAFVRVPGETRSNIKLAEADGRITDINGPGPLVSAMAQVELMLRLDALVPGQDLVVVAGSLPRGVEPQSFTDLINRIQGHGLKVALDTSGEALRAGLLATPWLIKPNVEELEALCERDLSSPAAQRQEAGLLRARGIEHVVISQGADGVSWFGPEIDLHARPPRVRVASTVGAGDSLLAGMVHGLASGWAADRTLRLATATAAQAVTQVGFGIRDLAELQQLEAAVSLTAQPEQQEVSR
>NZ_AP014862.1|WP_004420753.1|3471824_3473072_+|MFS-transporter
MPDSRSWPTPIRALRHPNFRLYFTGQAVSTLGSWLQQVALAWLIYRLTGSAALLGVTTFASLLPQLLVGPLAGAWIDRHDKRRLLIGVQGLLGLQAIALTVLTATGLIGPTLIVLMAAVLGVLNAFDTPLRQSLLSQFVSGKEDLPNALALNAMLFNASRFIGPPLAGLLLGFTSEATCFALNALSYLGLAAGLLVIRMAPTPRAAGSTGDVFREGLTYVAAQPPIRQMMLSVLVVNLTASSYAVLLPVFAKDIFAGDARTLGWLWGAAGLGSLVGTLLLANRHALTSLVGTILACALAGGAGLLAFAASQHLALSLLAMAVIGFSITNCNVGTNILLQSLAPERLRGRVVSLYTSTRFGFDAIGGLLVGILAEQVGAPWAMASAGFLLLGYCAWLLPRQRRLARQVADAPREDG
>NZ_AP014862.1|WP_004420750.1|3473202_3474171_+|LuxR-family-transcriptional-regulator
MSRIATELLDAFSSTTLELQRLARDTPIERFRSLALAELQRLLPFHKAWWGRSAMNDGIPEPQSSHLHNLPARYVTDWQLIRHEDTTIDRVHANLGQAAIVDLHATDTPPGLRWLGERYGIGELLCIVHTDPETALSDHLALYRNPGAPRFTGQDRLLINQLMRHLVVAVSTNQIHTLANRREGLSNPRNLALAICDARGILHCAERGFVELLLSEWPDWTGPRLPMSLDPLAPQDCRLQIEVSAAGDLLLVAARSLVPLQRLSARENDVAQRFGEGMTYKEIARELGVAPNTVRHHIRTIYSKLGVNDKARIAQLLHAPPD
>NZ_AP014862.1|WP_004420747.1|3474208_3475369_+|MFS-transporter
MARSPSTPPALLAAIVLFAAITPAVLMTAPALAAQLASQWQLSPGQIGDLFSAELGAMSLATLPAIWWLKRVNWRLAALLAGTLFVTGNLASAWAEGYTTLVILRFLTALAGGSLMILCLSSAATTDNPSRVYGLWVMGQLVLGAIGLALLPKLFASQGLASGYLLLAALGLLVLPLARAFPSGAQSPAQARSEDYGAPPLRVGLGILGLLGFYIALSGVWTFIGAMGESAGLDAQANGNVLAIATLMGILGAVIAAVIGERLPRVPSLWLGFGLMALSTLLLLGQPQLARFAIAALVFKFTWTYVLPFILASLADLDPSGRLMNLSNLVIGGGLALGPALAGRLIERQGGFDGLLLAAAVITLLSLLAVLGSRERGRAVASFDSH
>NZ_AP014862.1|WP_004420744.1|3475384_3476506_+|class-II-histone-deacetylase
MSRRTAFLFDEHCLWHSAARLHALTLPVGGWVQPPAAAGHAESPETKRRLKSLMDVSGLTRALQVSSAPPADEEDLLRVHPSHYLARFKALSDAGGGDLGDEASVGPGSYEIARLSAGLALAAVDTVLKGEADNAYALSRPPGHHCLPDQAMGFCFLANIAIAIEAAKARHGLGKVAVIDWDVHHGNGTQAIYYRRPDVLTLSLHQDGCFPPGYSGADDQGEGAGLGANLNIPLLPGSGHAAYLDAMERIVIPALERFRPELIVVACGYDANAVDPLARMLLHSDSFRAMTQRLREAAERLCQGRLVMVHEGGYAEAYVPFCGLAVMEELAGIRTEVVDPLRDFIELQQPGEAHRRLQSELIGDLAQAFGLAG
>NZ_AP014862.1|WP_004420742.1|3476610_3477810_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MTQPLAPKGRGLIVLLAALVAFAPLSIDMYLPSLPTLAGELGASERQVQHSISVFLVGLCLGMLFYGPLSDRYGRRPLLLGGILLYVVASLGCALVRSADQLLLWRGLQALGGAAASVLARTIVRDLFPLQQSARVLSLMHLVTMLATLVAPLLGSWLMQLAGWRSIFVGLLGFAALCALAVWCWVPETHRGEARGHSLASAFAAYLSILRQPRAVGLMLCMELSFAGMFAYITASPFVFIERFGFSPSQYALLFGANIAGVIVATFLNARLVGPLGPEIMLRRGSVVSALAGLWLLLAATQPALGWWGVALGLLLYVSVTGMLGANAIASLMALFPQRAGAAAALAVAGQFGLGALASGAVGLLHDGSAWPMCLVVALCGLGAFLSLRLAVRREAVVA
>NZ_AP014862.1|WP_004420740.1|3477870_3479193_-|TRAP-transporter-large-permease
MSGLGLGLLALAATFVLLVLRVHIGLTMMVGGALCFLAVNQGDGSALLFSLNNLAWSRLSNYDLAVIPLFVLMGQFATHGGLSRAIFRCAAAFVGHLRGGLGMSAIGACAGFGAICGSSLATSATMSQVALPELRRHNYSGRLATATVAAGGTLGILIPPSVPLIIYAVLTQESIAKLFVAAVVPGLLAALGYLIVVRLMVAREPEGHRYSEPASVAERFKAFLQVLPVLGVFVVVIVGIYGGWANPTEAASIGAAACGLLAVFQGGMRWTGMRLSLLGTAETTAMIFLVLLGADLLNSGLALTQMPTELAEWVKQSGFAPMLVLCTILLLYLVLGCVMDSLAMILLTIPIFYPVVMGLDFYGMTEVQKSIWFGILALMVVEIGLIHPPLGMNLFIVNKVARDVPYLETAKGVLPFLASDLVRIVLLVAFPGICLWLLSL
>NZ_AP014862.1|WP_004420738.1|3479189_3479720_-|TRAP-transporter-small-permease
MNESLSFDNAPAEGAGLASRALLRTAQGFALGGGLILLALVGMSLVSIIGRKLFATPIQGDIELMEIGAAVAIAAFLPLCELRGQHIKVDAFTLKLPARAQAWLDAIAHGLCLLAALVLAWRTGLQVLESREYGEVSTLLSIPLWLPLTLIVPSLALLAVTAAARTIHCLTGEPRP
>NZ_AP014862.1|WP_051050692.1|3479726_3480749_-|TRAP-transporter-substrate-binding-protein
MKMSTLAVLFAATCTSAAAFAETTYTLKVAHFLPANSNAQRNIIEPWCEQLREESGGRLKCQLYPSMQLGGTPAKLADMARNGVADIVWTAPAYSAGKFPRIEAMELPFMLPTGARASNPIIWQYYEQYARDDFKGYKVLSVHGDGGMDIHTRGKPVARLEDLKDLKLRASSRTAAKLVEALGATPVSMPPAQMTESISKGVVDGALASWEVVPPTKLDEVTDHHSTIPAGQPAFSYTVLAMLMNPRKFDSLPEDLRAIIERNSGPALNERFAQAWDRFLDAAREKTPVEQLVSIDERAYDAMRQAAAPVADAWAADASGKGLDGKALLEGARTLSASAR
>NZ_AP014862.1|WP_004420735.1|3481183_3482101_-|4-hydroxyphenylacetate-catabolism-regulatory-protein-HpaA
MAERQPIPNINIGQVYDQRYADAEVHYEALGKLADFFGRNMPVHRHDRFFQVHYVKSGAVRVYLDEQQYRQEGPLFFLTPPTIPHAFVTEQDADGHVLTVRQQLVWPLLEAERGLAEGPQIAPVCVAFAELGEALQEEVRRLDLLFDQLRSEFAADRPGRDEALSALTRLIFISLLRLSARSLKAQPARHEDLQVFHRFNALIEAHYPEHWPLAQYASEMGVTEARLNDICRRVADLPSKRLIHDRVMQEAKRLLLFTGSSANEICYLLGFKDPAYFSRFFARNAGMSPGEYRQRKAADKEEAWR
>NZ_AP014862.1|WP_004420732.1|3482267_3482927_+|5-oxopent-3-ene-1,2,5-tricarboxylate-decarboxylase
MRPALDHVATGTLFGVALNYRGLLESRLEEFQQPPYQKPPVKPVLFIKTPNTRNGHGQPVVYPKGVERLQPGPALGVVIGRNASRVSAAAAMDHVAGYVIVNEFSLPEESYYRPAVKAKCRDGFCPIGPEFVPAAEVRDPHALTLKLFVNGELRQENTTANLVRGIPRLIEEISEFMTLHEGDVLITGTPEGRVDVQPGDLVEVEITGLGRLANTLVAE

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Crispr_ID: NZ_AP014862_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP014862_6

4368914-4369009

Orphan

Consensus_repeat	Method
ATTCGCCGGCAAGCCGGCTCCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP014862_6

>merge|NZ_AP014862|6|4368914-4369009|CRISPRCasFinder
ATTCGCCGGCAAGCCGGCTCCTACACCCACCGTGCCCCGCAGGAGCGAGCTTGCTCGCGTACCTGCCCGCACGATTCGCCGGCAAGCCGGCTCCTA

>NZ_AP014862|6|6|4368914-4369009|CRISPRCasFinder
ATTCGCCGGCAAGCCGGCTCCTA	CACCCACCGTGCCCCGCAGGAGCGAGCTTGCTCGCGTACCTGCCCGCACG
ATTCGCCGGCAAGCCGGCTCCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014862.1\|WP_003457011.1\|4361613_4362363_-\|flagellar-type-III-secretion-system-pore-protein-FliP	unknown	unknown	gnl\|CDD\|235566
NZ_AP014862.1\|WP_003456983.1\|4372609_4374391_-\|flagellar-M-ring-protein-FliF	unknown	unknown	gnl\|CDD\|235668
NZ_AP014862.1\|WP_003456987.1\|4370801_4371593_-\|flagellar-assembly-protein-FliH	unknown	unknown	gnl\|CDD\|235562
NZ_AP014862.1\|WP_003457009.1\|4362362_4362797_-\|flagellar-biosynthetic-protein-FliO	unknown	unknown	gnl\|CDD\|225731
NZ_AP014862.1\|WP_003457005.1\|4363307_4364279_-\|flagellar-motor-switch-protein-FliM	unknown	unknown	gnl\|CDD\|235849
NZ_AP014862.1\|WP_003456979.1\|4374869_4376282_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_AP014862.1\|WP_003456997.1\|4366729_4368424_-\|fused-response-regulator/phosphatase	unknown	unknown	gnl\|CDD\|369272
NZ_AP014862.1\|WP_003457001.1\|4364996_4366274_-\|flagellar-hook-length-control-protein-FliK	unknown	unknown	gnl\|CDD\|225686
NZ_AP014862.1\|WP_003456985.1\|4371600_4372617_-\|flagellar-motor-switch-protein-FliG	unknown	unknown	gnl\|CDD\|235561
NZ_AP014862.1\|WP_036994402.1\|4379621_4380002_-\|flagellar-export-chaperone-FliS	unknown	unknown	gnl\|CDD\|235560
NZ_AP014862.1\|WP_003457013.1\|4361341_4361611_-\|flagellar-biosynthesis-protein-FliQ	unknown	unknown	gnl\|CDD\|235567
NZ_AP014862.1\|WP_003456999.1\|4366343_4366697_-\|Hpt-domain-containing-protein	unknown	unknown	gnl\|CDD\|366732
NZ_AP014862.1\|WP_003456989.1\|4369459_4370812_-\|flagellar-protein-export-ATPase-FliI	unknown	unknown	gnl\|CDD\|168181
NZ_AP014862.1\|WP_003456972.1\|4379295_4379592_-\|flagellar-protein-FliT	unknown	unknown	gnl\|CDD\|373699
NZ_AP014862.1\|WP_003456977.1\|4376288_4377494_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|236901
NZ_AP014862.1\|WP_003456981.1\|4374405_4374738_-\|flagellar-hook-basal-body-complex-protein-FliE	unknown	unknown	gnl\|CDD\|178948
NZ_AP014862.1\|WP_003456975.1\|4377604_4379077_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_AP014862.1\|WP_003456994.1\|4368435_4368741_-\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|132914
NZ_AP014862.1\|WP_003457003.1\|4364292_4364811_-\|flagellar-basal-body-associated-protein-FliL	unknown	unknown	gnl\|CDD\|180207
NZ_AP014862.1\|WP_003457007.1\|4362800_4363265_-\|flagellar-motor-switch-protein-FliN	unknown	unknown	gnl\|CDD\|168189

Protein	Function_ID	Function_description	E-value
NZ_AP014862.1\|WP_003457011.1\|4361613_4362363_-\|flagellar-type-III-secretion-system-pore-protein-FliP	gnl\|CDD\|235566	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed.	2.74747e-127
NZ_AP014862.1\|WP_003456983.1\|4372609_4374391_-\|flagellar-M-ring-protein-FliF	gnl\|CDD\|235668	PRK06007, fliF, flagellar basal body M-ring protein FliF.	0
NZ_AP014862.1\|WP_003456987.1\|4370801_4371593_-\|flagellar-assembly-protein-FliH	gnl\|CDD\|235562	PRK05687, fliH, flagellar assembly protein FliH.	2.8349e-75
NZ_AP014862.1\|WP_003457009.1\|4362362_4362797_-\|flagellar-biosynthetic-protein-FliO	gnl\|CDD\|225731	COG3190, FliO, Flagellar biogenesis protein [Cell motility and secretion].	5.11152e-25
NZ_AP014862.1\|WP_003457005.1\|4363307_4364279_-\|flagellar-motor-switch-protein-FliM	gnl\|CDD\|235849	PRK06666, fliM, flagellar motor switch protein FliM; Validated.	1.28603e-172
NZ_AP014862.1\|WP_003456979.1\|4374869_4376282_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	0
NZ_AP014862.1\|WP_003456997.1\|4366729_4368424_-\|fused-response-regulator/phosphatase	gnl\|CDD\|369272	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE). This family contains a number of bacterial stage II sporulation E proteins (EC:3.1.3.16). These are required for formation of a normal polar septum during sporulation. The N-terminal region is hydrophobic and is expected to contain up to 12 membrane-spanning segments.	4.6263e-40
NZ_AP014862.1\|WP_003457001.1\|4364996_4366274_-\|flagellar-hook-length-control-protein-FliK	gnl\|CDD\|225686	COG3144, FliK, Flagellar hook-length control protein [Cell motility and secretion].	2.15437e-34
NZ_AP014862.1\|WP_003456985.1\|4371600_4372617_-\|flagellar-motor-switch-protein-FliG	gnl\|CDD\|235561	PRK05686, fliG, flagellar motor switch protein G; Validated.	3.66923e-166
NZ_AP014862.1\|WP_036994402.1\|4379621_4380002_-\|flagellar-export-chaperone-FliS	gnl\|CDD\|235560	PRK05685, fliS, flagellar export chaperone FliS.	1.55785e-61
NZ_AP014862.1\|WP_003457013.1\|4361341_4361611_-\|flagellar-biosynthesis-protein-FliQ	gnl\|CDD\|235567	PRK05700, fliQ, flagellar type III secretion system protein FliQ.	9.35652e-34
NZ_AP014862.1\|WP_003456999.1\|4366343_4366697_-\|Hpt-domain-containing-protein	gnl\|CDD\|366732	pfam01627, Hpt, Hpt domain. The histidine-containing phosphotransfer (HPt) domain is a novel protein module with an active histidine residue that mediates phosphotransfer reactions in the two-component signaling systems. A multistep phosphorelay involving the HPt domain has been suggested for these signaling pathways. The crystal structure of the HPt domain of the anaerobic sensor kinase ArcB has been determined. The domain consists of six alpha helices containing a four-helix bundle-folding. The pattern of sequence similarity of the HPt domains of ArcB and components in other signaling systems can be interpreted in light of the three-dimensional structure and supports the conclusion that the HPt domains have a common structural motif both in prokaryotes and eukaryotes. In S. cerevisiae ypd1p this domain has been shown to contain a binding surface for Ssk1p (response regulator receiver domain containing protein pfam00072).	7.33207e-14
NZ_AP014862.1\|WP_003456989.1\|4369459_4370812_-\|flagellar-protein-export-ATPase-FliI	gnl\|CDD\|168181	PRK05688, fliI, flagellar protein export ATPase FliI.	0
NZ_AP014862.1\|WP_003456972.1\|4379295_4379592_-\|flagellar-protein-FliT	gnl\|CDD\|373699	pfam15268, Dapper, Dapper. This is a family of signalling proteins. They act in a diverse range of signaling pathways and have a range of binding partners. They act as homo- and heterodimers.	0.000152371
NZ_AP014862.1\|WP_003456977.1\|4376288_4377494_-\|PAS-domain-containing-protein	gnl\|CDD\|236901	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS.	2.20633e-51
NZ_AP014862.1\|WP_003456981.1\|4374405_4374738_-\|flagellar-hook-basal-body-complex-protein-FliE	gnl\|CDD\|178948	PRK00253, fliE, flagellar hook-basal body protein FliE; Reviewed.	4.59582e-38
NZ_AP014862.1\|WP_003456975.1\|4377604_4379077_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	3.02134e-171
NZ_AP014862.1\|WP_003456994.1\|4368435_4368741_-\|STAS-domain-containing-protein	gnl\|CDD\|132914	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.	2.20702e-21
NZ_AP014862.1\|WP_003457003.1\|4364292_4364811_-\|flagellar-basal-body-associated-protein-FliL	gnl\|CDD\|180207	PRK05696, fliL, flagellar basal body-associated protein FliL; Reviewed.	6.09465e-73
NZ_AP014862.1\|WP_003457007.1\|4362800_4363265_-\|flagellar-motor-switch-protein-FliN	gnl\|CDD\|168189	PRK05698, fliN, flagellar motor switch protein FliN.	2.50727e-93

>NZ_AP014862.1|WP_003456994.1|4368435_4368741_-|STAS-domain-containing-protein
MAITSMPTDDGQELTITIQGRFDFGAHQEFRDAYERVNFTPKRYVVDLKGTTYLDSSALGMLLLLRDHAGGERAQIRLTNCNPDVRKILAISNFEQLFQIA
>NZ_AP014862.1|WP_003456997.1|4366729_4368424_-|fused-response-regulator/phosphatase
MPAPLTILIAEDNAADRLLLSTIVNRQGHRAITAANGREAVSLFQREQPQLVLMDALMPEMDGFEAARRIKQLAGEALVPIIFLTSLTENEALVRCLEAGGDDFLAKPYNRVILEAKIKALDRLRRLQDTVLQQRDLIARHNEHLVTEQRVAKAVFDKVAHSGCLSAPNIRYLQSPYALFNGDLLLAAYKPSGGMHVLLGDFTGHGLPAAIGAMPLAEVFYGMTAKGYAMVDILREMNAKLKRILPVGVFCCATFLNLSFQRRLVEVWNGGLPDGYLRRAEGGEPIRLVSRHLPLGVLDQGSFNAHFESYPVEAGDRILLVSDGVLETRNDNDELFGDQRLRAVLDTTADGNRVFDEIQLALSAFRGHAQDDVSMIEVCMLEEVTERAKLAFTDSGQASPLDWSASFEFRAQTLKRFNPLPFLLQLLLEVQGLRDQGGALYTVLAELYSNALEHGVLGLDSSLKRDAEGFARYYRERSERLASLEAGYVRFHLELIPEGRGGRLRVQVQDSGGGFDLEDVLARRPAVECFSGRGLALVSQLAARCEPAEDGNGIHVEFRWPSQA
>NZ_AP014862.1|WP_003456999.1|4366343_4366697_-|Hpt-domain-containing-protein
MSDSPLDHAVLSALHEVMEEEFVVLLDTFLADSQERLRQIRQALADGDSQAMRLAAHSFKGSCSNMGAPLLAGLCKQLEDLAQRGQLASAPALVEQIEAAFLVVHDLLQDERRGLTR
>NZ_AP014862.1|WP_003457001.1|4364996_4366274_-|flagellar-hook-length-control-protein-FliK
MPVAPDLLLQARPDVKPKAPAAKAPEKPAEASKGEASSFAQMYAKERQAKAVERNEAEARQARSKDGEAARTDPPAAAPGSDEPGVADSGKPLPADESDTRKAEGETVMDPLLMMAMNGQLLADEAQAPAVDAGDDLATLTVAPPVQSAAPATLSEASLDPDLDQLNQMPAVKMALQQGAQAAQQVQNLAQANQAAPTADQDFASALAAFADQPVEGGEGELEASLASAELSGEVAEGLGESKGDVRNELLANRLNALSQAISPQALQAQRTPTLVPGQPVAVNQGGFSEAVVDRVMWLSSQNLKSAEIQLDPQELGRLEVRVHMTQDQAQVTFASPNANVRDALEGQMHRLREMFAQQGMNQLDVNVSDQSLNRGWQGAGGEAERRGGGRGDFGGGGDEEVTVSHSEIRATGSGGGRGLVDFYA
>NZ_AP014862.1|WP_003457003.1|4364292_4364811_-|flagellar-basal-body-associated-protein-FliL
MAKQQAKAPPEGGAPAGGKGKLKLIILGVVALLLAVGLSVGATWFFLSRGDKAEEPAEEAAAAPTRQPAIYLDMAPAFVVNFSQNGRQRYMQVSVALMARDQAQLDALKVHMPVLRNKLVMLFSGQGFESLVTPVGKEMLRQQATATVQELAKQETGATVVEQVLFTNFVLQ
>NZ_AP014862.1|WP_003457005.1|4363307_4364279_-|flagellar-motor-switch-protein-FliM
MAVQDLLSQDEIDALLHGVDDGLVETEADSDPGSVKSYDLTSQDRIVRGRMPTLEMINERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKMKPLRGTCLFILDAKLVFKLVDNFFGGDGRHAKIEGREFTPTELRVVRMVLDQAFVDLAEAWHAVLDVNFEYMNSEVNPALANIVSPSEVVVVSTFHIELDGGGGDLHITLPYSMIEPIREMLDAGFQSDVDDQDERWIKALREDILDVSVPVAATVVRRQLKLRDILHMQPGDIIPVEMPEHMIMRANGVPAFKAKLGSHKGNLSLQILEPIERQR
>NZ_AP014862.1|WP_003457007.1|4362800_4363265_-|flagellar-motor-switch-protein-FliN
MAIDDTPTPEEQALADEWAAALAEADDASQDDIDALMNQSAPAAPSSPRAPMEEFGAAPRPSGPVSLDGPNLDVILDIPVSISMEVGNTDITIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNEKFGIRLTDVISPSERIKKLR
>NZ_AP014862.1|WP_003457009.1|4362362_4362797_-|flagellar-biosynthetic-protein-FliO
MGRLLFSGLALMPLSVLAAESAPVAPVPAAVQVGSGMAAQLGQLAIGLLLVVGLIFLLAWLLRRVQRMAPRGGQVIKLVATQALGPRDRLVLVQVGGEQILLGLSAGRITPLHVLKEPVHLADAQAASPEFAQRLMELLGKDKH
>NZ_AP014862.1|WP_003457011.1|4361613_4362363_-|flagellar-type-III-secretion-system-pore-protein-FliP
MPRFLIALLLALAAPLALGADNPLSIPAITLGTNPEGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILVGLALFLTMFIMAPVFDRVNRDALQPYLNEQLSAQDALAKAEVPIKDFMLAQTRSSDLELFMRLSKRTDIPSPEAAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIIGTLAGSFGGV
>NZ_AP014862.1|WP_003457013.1|4361341_4361611_-|flagellar-biosynthesis-protein-FliQ
MTPEIAVDLFREALWLTCLIVGILVVPSLVVGLIVAMFQAATQINEQTLSFLPRLLVMLVTLIWAGPWLTRQLMEYIQTLYQNIPLLIG
>NZ_AP014862.1|WP_003456989.1|4369459_4370812_-|flagellar-protein-export-ATPase-FliI
MRIERTSFAKRLAGYDDVIQLPDQPVVEGRLLRMVGLTLEAEGLRAPVGSRCLVINDDSYHPVQVEAEVMGFSGSKIYLMPVGSLSGIAPGARVVPLPDTGRLPMGMSMLGRVLDGAGRALDGKGGMKAEDWVPMDGPTINPLKRHPISEPLDVGIRSINALLTVGRGQRLGLFAGTGVGKSVLLGMMTRFTKADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYCTRIAEYFRDKGKNVLLLMDSLTRFAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAGNAEAGGGSITAFYTVLSEGDDQQDPIADSARGVLDGHFVLSRRLAEEGHYPAIDIEASISRVMPQVVSPGHMKLAQRFKQLWSRYQQSRDLISVGAYVAGGDPDTDLAIARQPTMSAFLRQALDESESLEQSAQRLASSLGVQG
>NZ_AP014862.1|WP_003456987.1|4370801_4371593_-|flagellar-assembly-protein-FliH
MASKESASELIRAKDANAFDRWSLPSFDPDAPEPEVAEPEVQQVAPEPEPQIEEVPVEDVKPLTLDELEAIRQDAYNEGFATGERDGFHAGQLKARQEADAALAARLAQLETLMAQLLEPIAEQDRQIEESLVHLTSLITRQVIQRELRLDSSQIRHVLREALKLLPMGAGNVRIHVNPQDFEQVKALRERHEESWRILEDEALEPGGCRVETEHSRIDASIETRLNQAMKQLFEQQREQKVHPPAADRVVDLDALEPPRDAN
>NZ_AP014862.1|WP_003456985.1|4371600_4372617_-|flagellar-motor-switch-protein-FliG
MSDNRAPAKLTKVDKAAILLLSLGETDAAQVLRHMGPKEVQRVGVAMAQMRNVHREQVEQVMGEFVEMVGDQTSLGVGADGYIRKMLTQALGEDKANNLIDRILLGGSTSGLDSLKWMEPRAVADVIRYEHPQIQAIVVAYLDPDQAGEVLSHFDHKVRLDIILRVSSLNTVQPSALKELNLILEKQFAGNASTTRTTMGGVKRAADIMNFLDSSVEGQLMDSIREVDEDLSSQIEDLMFVFDNLADVDDRGIQALLREVSSDVLVLALKGADDAIKEKVFKNMSKRAAELLRDDLEARGPVRVSDVETAQKEILTIARRMAEAGEIVLGGKGGEEMI
>NZ_AP014862.1|WP_003456983.1|4372609_4374391_-|flagellar-M-ring-protein-FliF
MAEAAVAKVPAHADAPEEKKPLFGLSFLENLSQMSMLRQVGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLSGMDANQVVEALGAADIPYKIEPNSGALLVKAEDLARARLKLAGAGVAPSDGNVGFEILDKEQGLGTSQFMEATRYRRGLEGELARTVSSLNNVKGARVHLAIPKSSVFVRDERKPSASVLVELYPGRTLEPSQVMAIVNLVATSVPELDKSQVTVVDQKGNLLSDQQELSELTMAGKQFDYTRRMETLYTQRVHSILQPVLGNGRYKAEVSADVDFSAVESTSEMYNPDQPALRSEQKVAEERQNSSGPQGVPGALSNQPPAPGAAPQQATAAAPAGVQPGQPLLDDNGQQIIDPATGKPMLAPYPTDKRDQSTRNYELDRSISYTKQQQGRLRRLSVAVVLDDQVRVDPQTGETSRVPWTADEIARFTRLVQDSVGYDASRGDSVSVINTPFLADNSEEELDIPFYTQPWFWDVVKQVLGILFILVLVFGVLRPVLNNITGTGKSKELAGGRDGDVDLGEMGLSGDLSDDRVSLGGPQSILLPSPSDGYDAQLNAIKNLVAEDPGRVALVVKEWINADE
>NZ_AP014862.1|WP_003456981.1|4374405_4374738_-|flagellar-hook-basal-body-complex-protein-FliE
MSQGVEFNRLMLEMRAMQMDAMARAKPVQVEQPAAAAPSFADMLGQAVNKVAANQKVSSEMAAAFEMGQKGVDLTDVMIASQKASVSFEALTQVRNKLVQAYQDIMQMPV
>NZ_AP014862.1|WP_003456979.1|4374869_4376282_-|sigma-54-dependent-Fis-family-transcriptional-regulator
MTAKILLVEDDRALREALADTLLIGGYDFRAVECAEAALVALEEEAFGLMVSDVNMPGMDGHRLLGIVRQRYPQLPVLLMTAFGAVERAVEAMRQGAADYLVKPFEPNVLLDLVARHALGRMSVESQDGPVALEPASRQLLELAARVARSDSTVLISGESGTGKEVLAQYIHQQSGRAKGPFIAINCAAIPDNMLEATLFGHEKGAFTGAIASAPGKFELADGGTLLLDEISEMPLGLQAKLLRVLQEREVERVGGRRPISLDIRVLATTNRDLAGEVAAGRFREDLYYRLSVFPLAWRPLRERPADILPLAERLLAKHVKKMNHAAVRFSGEAQAALLAHAWPGNVRELDNAVQRALILQQGGVIQPQDLCLAAPVGMALTPSMVAPCLHAVPSVAVPVPVAPVAEAPGALGDDLRRHEFQMIIDTLRSERGRRKEAAERLGISPRTLRYKLAQMRDAGMDVEAYLYAS
>NZ_AP014862.1|WP_003456977.1|4376288_4377494_-|PAS-domain-containing-protein
MNPVVIPAQKTDVIPAEQASREGLEQAFSLFNQMSTQLSESYSMLEARVTELKGQLALVSAQRMQELAEKERLANRLQSVLDLLPGGVIVIDGQGVVREANPVARSLLGQPLVGMLWREVIARNFAPREDDGHEISLKDGRRLSIAIRSLNGEPGQLILLTDLTETRRLQDQLARHERLSALGRMVASLAHQIRTPLSAALLYAGHLNQQVLPADQQQRFAGRLKERLHELEHQVRDMLVFARGDLPLPDRLAPSALFAALRASAETHLEGRKVRWQCDFSQGELLCNRDTLVGAMLNLVENACQAASRDLRLKVHLYRRGSDLHLCISDNGPGIDAATLARLGEPFFTTKTTGTGLGLAVVKAVARAHRGELRLRSRLGRGTCATLVLPLIPAAHSVTQE
>NZ_AP014862.1|WP_003456975.1|4377604_4379077_-|sigma-54-dependent-Fis-family-transcriptional-regulator
MWRETKILLIDDNSDRRRDFAVILSFLGEEHLSCSSQDWRDATASLGASRDVLCVMLGEVNAKGGALELIKQLLVWDEFLPVLLIGDQVQADWPEDLRRRLLAYLEMPPSYNKLLDSLHRAQVYREMYDHARERGRQREPNLFRSLVGTSRAIQQVRQMMQQVADTDASVLILGESGTGKEVVARNLHYHSKRREAPFVPVNCGAIPAELLESELFGHEKGAFTGAITSRAGRFELANGGTLFLDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQNVDVRIIAATHKNLEQMIEAGSFREDLYYRLNVFPIDMAPLRERVEDIPLLINELISRMEHEKRGSIRFNSAAIMSLCNHDWPGNVRELANLVERMAIMHPYGVIGVSELPKKFRHVDDEDEHLKASLREEIEERSAIGAGLPGVASPALLPPEGLDLKDYLGNLEQGLIQQALDDASGVVARAAERLRIRRTTLVEKMRKYGMSRRDEELAEE
>NZ_AP014862.1|WP_003456972.1|4379295_4379592_-|flagellar-protein-FliT
MNATVQRLEATGAALREALSRQDWDAIGQLDQLCRQAVDDAMVDALDDTEQLGNRMQDLLALYRELVTVCQAEQQRVAGELIQLNQAQQGAKVYKLFG
>NZ_AP014862.1|WP_036994402.1|4379621_4380002_-|flagellar-export-chaperone-FliS
MNAMAALKQYQSVNTNAQIMDASPHRLIQMLMEGGLTRLAQARGAIERGQLAQKGELIGKAIAIIGGLRNSLDFEQGGEIAPNLDALYDYMVSRLVEANLKSDAALVDEVSGLLRNVKTGWDGIAQ

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Crispr_ID: NZ_AP014862_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP014862_7

4413746-4413833

Orphan

Consensus_repeat	Method
GTAGGAGCCGGCTTGCCGGCGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP014862_7

>merge|NZ_AP014862|7|4413746-4413833|CRISPRCasFinder
GTAGGAGCCGGCTTGCCGGCGAATGGCGCGGAGCCGTTCGCGAGCAAGCTCGCTCCTACAGGATCGTAGGAGCCGGCTTGCCGGCGAA

>NZ_AP014862|7|7|4413746-4413833|CRISPRCasFinder
GTAGGAGCCGGCTTGCCGGCGAA	TGGCGCGGAGCCGTTCGCGAGCAAGCTCGCTCCTACAGGATC
GTAGGAGCCGGCTTGCCGGCGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014862.1\|WP_003456916.1\|4412915_4413323_-\|flagellar-basal-body-rod-protein-FlgB	unknown	unknown	gnl\|CDD\|180196
NZ_AP014862.1\|WP_003456907.1\|4424575_4424860_+\|type-II-toxin-antitoxin-system-HigB-family-toxin	unknown	unknown	gnl\|CDD\|378301
NZ_AP014862.1\|WP_003456915.1\|4413857_4414280_-\|homoprotocatechuate-degradation-operon-regulator-HpaR	unknown	unknown	gnl\|CDD\|188209
NZ_AP014862.1\|WP_003456927.1\|4406560_4407661_-\|flagellar-basal-body-P-ring-protein-FlgI	unknown	unknown	gnl\|CDD\|235399
NZ_AP014862.1\|WP_003456918.1\|4411754_4412438_-\|flagellar-hook-assembly-protein-FlgD	unknown	unknown	gnl\|CDD\|235847
NZ_AP014862.1\|WP_036994390.1\|4414465_4414729_-\|DUF2790-domain-containing-protein	unknown	unknown	gnl\|CDD\|371321
NZ_AP014862.1\|WP_003456911.1\|4418186_4419695_-\|efflux-transporter-outer-membrane-subunit	unknown	unknown	gnl\|CDD\|273830
NZ_AP014862.1\|WP_003456923.1\|4408404_4409190_-\|flagellar-basal-body-rod-protein-FlgG	unknown	unknown	gnl\|CDD\|183687
NZ_AP014862.1\|WP_003456914.1\|4414905_4415817_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|182548
NZ_AP014862.1\|WP_003456912.1\|4416014_4418177_-\|FUSC-family-protein	unknown	unknown	gnl\|CDD\|377393
NZ_AP014862.1\|WP_003456913.1\|4415824_4416025_-\|DUF1656-domain-containing-protein	unknown	unknown	gnl\|CDD\|377931
NZ_AP014862.1\|WP_003456909.1\|4421121_4421490_-\|nitrite-reductase-small-subunit-NirD	unknown	unknown	gnl\|CDD\|239605
NZ_AP014862.1\|WP_003456917.1\|4412454_4412901_-\|flagellar-basal-body-rod-protein-FlgC	unknown	unknown	gnl\|CDD\|235556
NZ_AP014862.1\|WP_003456925.1\|4407672_4408386_-\|flagellar-basal-body-L-ring-protein-FlgH	unknown	unknown	gnl\|CDD\|183690
NZ_AP014862.1\|WP_003456908.1\|4421489_4424042_-\|nitrite-reductase-large-subunit	unknown	unknown	gnl\|CDD\|184951
NZ_AP014862.1\|WP_003456920.1\|4409235_4409979_-\|flagellar-basal-body-rod-protein-FlgF	unknown	unknown	gnl\|CDD\|183642
NZ_AP014862.1\|WP_003456929.1\|4405387_4406551_-\|flagellar-assembly-peptidoglycan-hydrolase-FlgJ	unknown	unknown	gnl\|CDD\|235559
NZ_AP014862.1\|WP_003456919.1\|4410371_4411709_-\|flagellar-hook-protein-FlgE	unknown	unknown	gnl\|CDD\|235557
NZ_AP014862.1\|WP_131679703.1\|4413321_4413525_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014862.1\|WP_003456910.1\|4419864_4420896_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114

Protein	Function_ID	Function_description	E-value
NZ_AP014862.1\|WP_003456916.1\|4412915_4413323_-\|flagellar-basal-body-rod-protein-FlgB	gnl\|CDD\|180196	PRK05680, flgB, flagellar basal body rod protein FlgB; Reviewed.	1.72661e-59
NZ_AP014862.1\|WP_003456907.1\|4424575_4424860_+\|type-II-toxin-antitoxin-system-HigB-family-toxin	gnl\|CDD\|378301	pfam09907, HigB_toxin, HigB_toxin, RelE-like toxic component of a toxin-antitoxin system. HigB_toxin is a family of RelE-like prokaryotic proteins that function as mRNA interferases. HigB cleaves translated mRNA only, and cleavage depended on translation of the target RNAs. HigB belongs to the RelE super-family of RNases. The toxin-antitoxin gene-pair is induced by environmental stress factors.	1.14704e-30
NZ_AP014862.1\|WP_003456915.1\|4413857_4414280_-\|homoprotocatechuate-degradation-operon-regulator-HpaR	gnl\|CDD\|188209	TIGR02337, Homoprotocatechuate_degradative_operon_repressor., homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.	7.62747e-54
NZ_AP014862.1\|WP_003456927.1\|4406560_4407661_-\|flagellar-basal-body-P-ring-protein-FlgI	gnl\|CDD\|235399	PRK05303, flgI, flagellar basal body P-ring protein FlgI.	0
NZ_AP014862.1\|WP_003456918.1\|4411754_4412438_-\|flagellar-hook-assembly-protein-FlgD	gnl\|CDD\|235847	PRK06655, flgD, flagellar hook assembly protein FlgD.	3.81421e-86
NZ_AP014862.1\|WP_036994390.1\|4414465_4414729_-\|DUF2790-domain-containing-protein	gnl\|CDD\|371321	pfam10976, DUF2790, Protein of unknown function (DUF2790). This family of proteins with unknown function appear to be restricted to Pseudomonadaceae.	4.93786e-35
NZ_AP014862.1\|WP_003456911.1\|4418186_4419695_-\|efflux-transporter-outer-membrane-subunit	gnl\|CDD\|273830	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. [Cellular processes, Detoxification, Transport and binding proteins, Porins].	1.03149e-85
NZ_AP014862.1\|WP_003456923.1\|4408404_4409190_-\|flagellar-basal-body-rod-protein-FlgG	gnl\|CDD\|183687	PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional.	8.36085e-165
NZ_AP014862.1\|WP_003456914.1\|4414905_4415817_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|182548	PRK10559, PRK10559, p-hydroxybenzoic acid efflux pump subunit AaeA.	1.67616e-79
NZ_AP014862.1\|WP_003456912.1\|4416014_4418177_-\|FUSC-family-protein	gnl\|CDD\|377393	pfam04632, FUSC, Fusaric acid resistance protein family. This family includes a conserved region found in two proteins associated with fusaric acid resistance, FusC from Burkholderia cepacia and fdt-2 from Klebsiella oxytoca. These proteins are likely to be membrane transporter proteins.	0
NZ_AP014862.1\|WP_003456913.1\|4415824_4416025_-\|DUF1656-domain-containing-protein	gnl\|CDD\|377931	pfam07869, DUF1656, Protein of unknown function (DUF1656). This family contains bacterial proteins, many of which are hypothetical. Some proteins in this family are putative membrane proteins.	3.63461e-11
NZ_AP014862.1\|WP_003456909.1\|4421121_4421490_-\|nitrite-reductase-small-subunit-NirD	gnl\|CDD\|239605	cd03529, Rieske_NirD, Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. Members include bacterial and fungal proteins. The bacterial NirD contains a single Rieske domain while fungal proteins have a C-terminal Rieske domain in addition to several other domains. The fungal NirD is involved in nutrient acquisition, functioning at the soil/fungus interface to control nutrient exchange between the fungus and the host plant. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The Rieske [2Fe-2S] cluster is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In this family, only a few members contain these residues. Other members may have lost the ability to bind the Rieske [2Fe-2S] cluster.	2.11506e-49
NZ_AP014862.1\|WP_003456917.1\|4412454_4412901_-\|flagellar-basal-body-rod-protein-FlgC	gnl\|CDD\|235556	PRK05681, flgC, flagellar basal body rod protein FlgC; Reviewed.	1.15176e-70
NZ_AP014862.1\|WP_003456925.1\|4407672_4408386_-\|flagellar-basal-body-L-ring-protein-FlgH	gnl\|CDD\|183690	PRK12698, flgH, flagellar basal body L-ring protein FlgH.	2.83343e-89
NZ_AP014862.1\|WP_003456908.1\|4421489_4424042_-\|nitrite-reductase-large-subunit	gnl\|CDD\|184951	PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional.	0
NZ_AP014862.1\|WP_003456920.1\|4409235_4409979_-\|flagellar-basal-body-rod-protein-FlgF	gnl\|CDD\|183642	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed.	3.1225e-151
NZ_AP014862.1\|WP_003456929.1\|4405387_4406551_-\|flagellar-assembly-peptidoglycan-hydrolase-FlgJ	gnl\|CDD\|235559	PRK05684, flgJ, flagellar assembly peptidoglycan hydrolase FlgJ.	4.44776e-137
NZ_AP014862.1\|WP_003456919.1\|4410371_4411709_-\|flagellar-hook-protein-FlgE	gnl\|CDD\|235557	PRK05682, flgE, flagellar hook protein FlgE; Validated.	1.73785e-157
NZ_AP014862.1\|WP_003456910.1\|4419864_4420896_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.70357e-68

>NZ_AP014862.1|WP_131679703.1|4413321_4413525_+|hypothetical-protein
MSGTFASGNLVCLPDIQQRPCHLCFSFIFNTLNKGHPAISGKRVPLSALERQSGKRVFAASSRHAGE
>NZ_AP014862.1|WP_003456916.1|4412915_4413323_-|flagellar-basal-body-rod-protein-FlgB
MSISFEKALGIHQQALSFRAQRGEVLANNIANADTPNYKARDLDFSAVLAQQADKQAQGAFHAATTHERHIEADGFDMGDAALKYRIPFQAAIDQNTVDAQLEQANYTENAMQFQASFTLLNSKFNGLTKALRGE
>NZ_AP014862.1|WP_003456917.1|4412454_4412901_-|flagellar-basal-body-rod-protein-FlgC
MSLSSIFSIAGSGMSAQNTRLNTISSNIANAETVSSSLDTTYRARHPVFATVFQDSLGNGDRGSLFADQDQSGAGVEVLGVVEDQSTLTPRYEPNHPAANAEGYVYYPNVNVVEEMADMISASRSFQTNVEMMNTAKQMMQKVLTLGQ
>NZ_AP014862.1|WP_003456918.1|4411754_4412438_-|flagellar-hook-assembly-protein-FlgD
MSISNVATTDSQSILDQYALKSEATKSNDLGKNEFLELLVAQLNNQDPMSPQENGEFIAQLAQFSQVEGIEKLNSSMGSLLSGYQSSQALQASSLVGRKVIVPSEKAVVDTSETFKASAVLPVSSSNVWVNVYDSSGTLVNRISLGEQSAGSVSFMWDGKDSSGKLMQPGTYKFEAQAQYGGETKALYTMLPANVDSVTLAQNGGELMLNLAGIGSVGLSKVQVIGQ
>NZ_AP014862.1|WP_003456919.1|4410371_4411709_-|flagellar-hook-protein-FlgE
MAFNIGLSGLRAATSDLNVTGNNIANAGTAGFKQSRAEFADVYAASVLGTGKNAQGSGVSLGDVSQLFNQGNINYTQNALDLAINGNGFFQTSNNGEISYTRAGYFGTDRNGYIVNNFGYRLQGYGIDGNGNVQNGVVSDLQIQTANQAPRATTEVAQKFNLNSTTKAPTNTPFDPSDPTTYTSSTSVNIYDSQGNAHVMTQYFINNADPAATPPVSNNWTMAVLVDGRNPSDPTSTDPHTSSLLFNTDGSLDTAGMAAGGELNYDPATGLFNMDDWVPAKSDGATPATWSANGAVANAAGISLDIRGSTQYSSAFAVNSISQDGYTTGQLAGLEIDDTGVIFARYTNGQSKVQGQVILANFANVQGLTPVGKTGWVQSFESGEPVVGTPRSGTLGALQAGALEDSNVELSDQLVNLIVAQRNYQANAKTIQTEDAVTQTIINLR
>NZ_AP014862.1|WP_003456920.1|4409235_4409979_-|flagellar-basal-body-rod-protein-FlgF
MDKMLYVAMSGASQNSLAQRAHANNLANISTSGFRRDFEQARSMPVFGDSFPSRVYAMTERPGTDFTPGALQETGRDLDVAIDGQGWIAVQAPDGGEAYVRTASLQIDALGQLRTGNGLPVIGNAGPIAIPPEEKVEIGQDGTISIRALGEAPNVVAEVDRIKLVNPDPRQLEKGADGLIRVKDPQQLVQADAAVKVTSGFLEASNVNAVEEMTAILSLSRQFELSVKMMRTAEDNASAMARVLQFS
>NZ_AP014862.1|WP_003456923.1|4408404_4409190_-|flagellar-basal-body-rod-protein-FlgG
MLPALWVSKTGLSAQDMNMTTISNNLANVSTTGFKRDRAEFEDLLYQIRRQPGGQTSQDSELPTGLQLGTGVRIAGTQKIFTQGSLQTTEQPLDMAVNGRGFFQILMPDGTVGYTRDGSFHLNSDGQIVTSQGFALEPAIVLPTDVQTFTVGEDGTVSITTVGNPAAQVVGNIQTSDFVNPAGLQAIGNNLFLETASSGAPQVGTPGLNGLGVVLQNTLENSNVSVVEELVNMITTQRAYEMNSKVISTSDQMLAFVTQNL
>NZ_AP014862.1|WP_003456925.1|4407672_4408386_-|flagellar-basal-body-L-ring-protein-FlgH
MNRLIFLVPLLGITLVQGCVQPAPRPNDPYYAPVLPRTPLPAAQNNGAIYQAGFETNLYDDRKAYRVGDIITITLNERTQASKNARSQIQKDSNTSVGLTSLFGGGVSVNNPNGGLNPLDAARLSLDAEYGASRDAQGDAQAGQSNSLSGSVTVTVAEVLPNGILAVRGEKWLTLNTGDELVRITGMVRADDISTDNTVSSTRVADARITYSGTGAFADASQPGWFDRFFLSPMFPF
>NZ_AP014862.1|WP_003456927.1|4406560_4407661_-|flagellar-basal-body-P-ring-protein-FlgI
MKRLITALCLLLAAGGAQAERLKDLASIQGVRSNQLIGYGLVVGLNGTGDQTTQTPFTLQTFNNMLAQFGIKVPANSGNVQLKNVAAVSIHADLPPFAKPGQAIDVTISSIGNAKSLRGGSLLMTPLKGIDGNVYAIAQGNLVVGGFDAEGSDGSKITVNVPSSGRIPSGATVERPVPSGFDQGNFLTLNLNRPDFTTAKNIVDKLNGLLGPGVAQAVDGGSVRVSAPLDPNQRVDYLSVIENLEIEAGQAVAKVIINSRTGTIVIGQNVKVQPAAVTHGSLTVTITEDPIVSQPGAFSGGETAVVPRSRVSAEQEAKPMFKFGPGTTLDEIVRAVNQVGAAPSDLMAILEALKQAGALQADLIVI
>NZ_AP014862.1|WP_003456929.1|4405387_4406551_-|flagellar-assembly-peptidoglycan-hydrolase-FlgJ
MNSRLSAGLAAGSKLDSGAYTDLNRLSQLKVGKDRDSEGNIRKVAQEFESLFLNEMMKSMRQAGEAFAEGNYLNSNETKTYQEMHDQQLAVTLSKQGRGLGLADVLTRQLSKTGHAERPNPFAQVQSGAQASWPVDGGKPVAKAAEAAEPVRDDSRLINQRRLSLPGRLADRQVSGVAPSVEEQAGAALAAKDWSTTRSYPAPERQPVVGADTTRAAGKRVFASRDEFIQTLLPMAEKAAERIGVDPRYLVAQAALETGWGKSIIRQGDGSSSHNLFGIKAHRAWDGESARVMTTEYKAGRPVKEAASFRAYDSFEQSFHDYVSFLENNNRYDNALDVADKPEQFVRELQKAGYATDPQYARKITQIARGMQTYQTVAAVGGTTTRI
>NZ_AP014862.1|WP_003456915.1|4413857_4414280_-|homoprotocatechuate-degradation-operon-regulator-HpaR
MPSPRPSLTLTLLQAREAAMSFFRPLLNQHDLTEQQWRVIRLLRQHGELESYQLAELACILKPSMTGVLARLERDGMVSRRKAPQDQRRVLVNLTEKGHQCFISMSEGMEANYQKIQEQFGEQKLQQLIELLNELKQIKP
>NZ_AP014862.1|WP_036994390.1|4414465_4414729_-|DUF2790-domain-containing-protein
MKLLALLALAGLPAFVFAAEQAESSVAEEPAVERYHYGMELDIAKVLSRSDIPNACGVVPAYMIYQDHQGRIHKLEYRVFGQGCSNG
>NZ_AP014862.1|WP_003456914.1|4414905_4415817_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MSLKRLISVGVTLSVLALAVLLVRTLWQHYMDAPWTRDGRVRADVVNIAPDVAGLVVEVVVRDNQRVAAGDLLMRIDPEHYAVRVKEAEALVDARKAALEMRKENADRRADMDDLVVSRESREDASRLAAVARADYRQAVAALDAARLDLARTEVRAPMAGHVTNLNVYKGDFAQRGEASMALVADGSFYVNGYFEETRLPRIQVGDRAELRLMGGQRLTGRVDSIARGIYDRDNPQSRELIADVNPTFNWVRLAQRVPVRIHLDDIPDDVLLAAGMTCTVVIGEGGEAPDSSGLLNGLLFAQ
>NZ_AP014862.1|WP_003456913.1|4415824_4416025_-|DUF1656-domain-containing-protein
MPREIAVLGVYLPTLTLLFLLAFLLGWGLDRLFAWCGLYRHAWHPALLRVGLFTCLYGALALTIYR
>NZ_AP014862.1|WP_003456912.1|4416014_4418177_-|FUSC-family-protein
MVRSFNRALAEWARSDGLTWAFVCKALLTAFLALWLAYRLELPQPGTVLVTVFIVMQPQSGQVLAKSFYRIIGTLLGLSVMVLLIALFNQERVLFMLCLALWIGLCTAGAARYRDFRGYACVLAGYTAVMIGLPATRHPDDAFMLALWRVLEIGLGILCTGLVSGLVLPQSSRVDLRNTLQGRFRDFAAFACEGLRGGLDSVRFDAANARFAAAAVSLENLRNATAFEDPQMRMRSGRLARLNNEFMVLSTRFHGLHQLLRRLSVGQGGGVLEALQPCLAEVARLLAPLRDRLSSEAEASELAARLEACKQELMPLIRAGRAQLAVQQPSEAQGLDYDTAAELLYRFADDLHNYAQTHASLLDDRHQREQWKESFRPRANPVAAAIAGLRSGLLILVLSLFWMATAWPSGGTFAMTIGMVSALASSSSNPRRLSLQLALGASAGACLGVLMTFRVLPHLDGFALLCCALAPVVALGAWLLARPRSAGAGLGLLVWFGMHSVPANQTLFDPHRLLNEYLASVLSMALATVAAAVLLPPNQPWLWRRLERDLRLCVVRAVSGRLKGLVSGFESGTRDLLNQAYLYSAGRPDVQRQLLRWMFLVQEVGHAVIELRLEQARLPALSCYAESMPWRQAIRAMGRALVRLFILPSEANRQRALLAVEQAIDSVRGTAEPCAPQFETSPLRRLQSYLHFIRSSLLDPQNPLPRQVADSPRQGVAHAP
>NZ_AP014862.1|WP_003456911.1|4418186_4419695_-|efflux-transporter-outer-membrane-subunit
MLRNPWSGLPGAGLFLVVLSLTACIDSQGIAPRSERLDVAAVDAGRAIRQAEREARWPDARWWRAYGDPQLDAWMEMALAESPTLAMAAARVRQARALVGAVESAERPQANLDASLQRKRWPDDYFYGPGDLARTTSWNNTSLLGFSYDLDLWGRERSRSAQALDQARMRGAEARLAALELQGNLVRSYIGLALLHGERDVAQASLAQQEQRLALAQRRLRDGIGTRLEVSRVEAELPETHRRIDALDESIALVRHQLAALAGRGPGEGDRLQRPRLDLQRMPGLPDKLPLELLGRRPDLVASRWAVAAEARGIEVAKAGFYPNIDLLGGVGSSATQGGMLDFLRYDSLTYHLGPALSLPVFDGGLRRGQLGAATAGYDLAVERYNQTLVNALRQVSDGLVRIHSLQQQRRLAAEAVAAARATCDLALLAQQRGLTGFDAVLDAQPPLFRRQLRQREVEAALLTAQADLLLALGGGVQPEPAGPDEADLVPRQPRLRFLPKP
>NZ_AP014862.1|WP_003456910.1|4419864_4420896_+|LysR-family-transcriptional-regulator
MDILFNMRAFVCVAETGSFTAAAQRMDLTTSYISRAVATLETHLRTRLLHRTTRRIALTEAGQRYLHRCEQILGYIEEAEAEASEAHARPVGNLKVHAMTGISQHYLIKAIAGYSEKYPDVSFDLTLANRTTDILDEGYDISVVIAQELPDSGFISKQLGTTYSVLCASPGYVEKHGAPRQPADLSRHRCLRLVNNVMALDKWLLDGPDGQELVPVTQTPFQVNTADAMTEAIKAGIGIGVLPVYSAISGLKDGSLMRVLPSHSLFPLGIYALYPSRQFLDAKIRTWVEFLREFLPERVAADEQAVAAFSLRLGTPGGAGLTANGAEVFAGKPAPTAERDSTS
>NZ_AP014862.1|WP_003456909.1|4421121_4421490_-|nitrite-reductase-small-subunit-NirD
MAPVNAQRIDVSPQWQVLCSRQDLVPNSGVVAWLDGAQVALFYLPDAEEGRQLFAVDNHDPHAGANVIGRGIVGHLGGDLVIASPLYKQHYRLEDGTCLEYPEQRLRTWPVRLNGEVVEVGL
>NZ_AP014862.1|WP_003456908.1|4421489_4424042_-|nitrite-reductase-large-subunit
MNTSNPDLQTLVVIGNGMVGHHCVEQLIERGALDRYRIQVFSEEPLRAYDRVHLSEYFGGRDAESLALGEASLYQTPGVTLHLGVPVLEIDRARREVITAQGCVAYDKLVLATGSYPFVPPIEGAEGDSRLVYRTLADLDTIRAAATSARRGVVVGGGLLGLEAANALKSLGLDAHVVEFAPRLMPVQLDDQGGQALKARIEALGVGVHLSKATQSISAGEDYRYRMNFAGEDFLETDLIVFSAGIRPQDALARACGLELGPRGGIAIDGQCLSSDPDIFAIGECAAWNGSIFGLVAPGYQMARSVAAQLCGEEADPFIGADMSTKLKLLGVDVGSIGDAHGALPGARSYRFIDEATSSYRRLVVSADGKQALGAVLVGDNSYYDTLLQYVQNGIALPADPASLILPAGEGAPALGADALPATATVCSCHNVSKGAICSAIDNGCTDVAGVKACTKAATGCGGCAALLKQVVEHELSARGVAVDKSLCEHFAYTRQELYALVRVEGIETFEEMLAKHGRGHVGCEICKPAVGSILASCWNRPIQEPWLVPLQDTNDTFMANMQKNGTYSVVPRIPGGEITPEGLIAIGEVAKKYKLYTKITGGQRIDLFGAQLHELPDIWAELIAAGFETGHAYGKSTRTVKSCVGSTWCRYGVQDSVKMALDIEHRYKGLRSPHKLKFAVSGCTRECAEAQSKDVGVIATEKGWNLYVCGNGGMRPRHAELFATDLDDESLIRIIDRFLMFYIRTADKLQRTSVWRESLEGGLDYLKAVILDDSLGLAAELEAQMQLVVDRYECEWANAIQDPEKLKRFRTFVNDGRGDPDVHFVNERGQIRPAKAAELTLIPLAEEVV
>NZ_AP014862.1|WP_003456907.1|4424575_4424860_+|type-II-toxin-antitoxin-system-HigB-family-toxin
MHIITQKRIWEAKERWPEAASALDAWYRLMGRLEPTDFADMKQTFPSVDKVGDKHVFDIGGNKLRLIAVVDYRFRKVFIRAVLDHREYDRNHWK

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Crispr_ID: NZ_AP014862_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP014862_8

4430850-4431057

Orphan

Consensus_repeat	Method
GGCTCGCCCGCGAACATCTCCGCACCCTTCGCCGGCAAGCCGGCTCCTACGAAATCCA	PILER-CR

2 spacers

The CRISPR arrays of NZ_AP014862_8

>merge|NZ_AP014862|8|4430850-4431057|PILER-CR
GGCTCGCCCGCGAACATCTACGCACCCTTCGCCGGCAAGCCGGCTCCTACAAAATCCAACCCCGCCGTAGGAGCGGGCTCGCCCGCGAACATTTCCGCCCCCTTCGCCGGCAAGCCGGCTCCTACGAAATCCAACCCCGTCGTAGGAGCGGGCTCGCCCGCGAACATCTCCGCACCCTTCGCCGGCAAGCCGGCTCCTACGAAATCCG

>NZ_AP014862|8|1|4430850-4431057|PILER-CR
GGCTCGCCCGCGAACATCTACGCACCCTTCGCCGGCAAGCCGGCTCCTACAAAATCCA	ACCCCGCCGTAGGAGCG
GGCTCGCCCGCGAACATTTCCGCCCCCTTCGCCGGCAAGCCGGCTCCTACGAAATCCA	ACCCCGTCGTAGGAGCG
GGCTCGCCCGCGAACATCTCCGCACCCTTCGCCGGCAAGCCGGCTCCTACGAAATCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014862.1\|WP_003456886.1\|4434527_4435559_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270307
NZ_AP014862.1\|WP_003456882.1\|4436681_4438007_+\|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|180426
NZ_AP014862.1\|WP_003456894.1\|4431958_4432630_+\|DUF4157-domain-containing-protein	unknown	unknown	gnl\|CDD\|379338
NZ_AP014862.1\|WP_003456884.1\|4435617_4436685_+\|phosphotransferase	unknown	unknown	gnl\|CDD\|180426
NZ_AP014862.1\|WP_003456891.1\|4432783_4433449_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_AP014862.1\|WP_003456896.1\|4431095_4431716_-\|hydrolase	unknown	unknown	gnl\|CDD\|238494
NZ_AP014862.1\|WP_003456878.1\|4438509_4439928_-\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143467
NZ_AP014862.1\|WP_003456907.1\|4424575_4424860_+\|type-II-toxin-antitoxin-system-HigB-family-toxin	unknown	unknown	gnl\|CDD\|378301
NZ_AP014862.1\|WP_003456911.1\|4418186_4419695_-\|efflux-transporter-outer-membrane-subunit	unknown	unknown	gnl\|CDD\|273830
NZ_AP014862.1\|WP_003456902.1\|4426217_4427702_-\|cytosine/purine/uracil/thiamine/allantoin-permease	unknown	unknown	gnl\|CDD\|224374
NZ_AP014862.1\|WP_003456898.1\|4428901_4430527_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_AP014862.1\|WP_003456909.1\|4421121_4421490_-\|nitrite-reductase-small-subunit-NirD	unknown	unknown	gnl\|CDD\|239605
NZ_AP014862.1\|WP_003456889.1\|4433522_4434257_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212491
NZ_AP014862.1\|WP_003456906.1\|4424868_4425270_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|227786
NZ_AP014862.1\|WP_003456908.1\|4421489_4424042_-\|nitrite-reductase-large-subunit	unknown	unknown	gnl\|CDD\|184951
NZ_AP014862.1\|WP_003456904.1\|4425273_4426113_-\|5-aminopentanamidase	unknown	unknown	gnl\|CDD\|143604
NZ_AP014862.1\|WP_003456900.1\|4427977_4428880_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_AP014862.1\|WP_003456876.1\|4439943_4440987_-\|homoserine-dehydrogenase	unknown	unknown	gnl\|CDD\|235763
NZ_AP014862.1\|WP_003456880.1\|4438072_4438417_-\|RidA-family-protein	unknown	unknown	gnl\|CDD\|100007
NZ_AP014862.1\|WP_003456910.1\|4419864_4420896_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114

Protein	Function_ID	Function_description	E-value
NZ_AP014862.1\|WP_003456886.1\|4434527_4435559_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270307	cd13589, PBP2_polyamine_RpCGA009, The periplasmic-binding component of an uncharacterized ABC transport system from Rhodopseudomonas palustris CGA009 and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic binding domain that serves as the primary high-affinity receptor of an uncharacterized ABC-type polyamine transporter from Rhodopseudomonas palustris Cga009 and related proteins from other bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	9.06473e-90
NZ_AP014862.1\|WP_003456882.1\|4436681_4438007_+\|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|180426	PRK06148, PRK06148, hypothetical protein; Provisional.	2.83457e-161
NZ_AP014862.1\|WP_003456894.1\|4431958_4432630_+\|DUF4157-domain-containing-protein	gnl\|CDD\|379338	pfam13699, DUF4157, Domain of unknown function (DUF4157). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 80 amino acids in length. This domain contains an HEXXH motif that is characteristic of many families of metallopeptidases. However, no peptidase activity has been shown for this domain.	5.69618e-09
NZ_AP014862.1\|WP_003456884.1\|4435617_4436685_+\|phosphotransferase	gnl\|CDD\|180426	PRK06148, PRK06148, hypothetical protein; Provisional.	8.23888e-87
NZ_AP014862.1\|WP_003456891.1\|4432783_4433449_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	5.00791e-46
NZ_AP014862.1\|WP_003456896.1\|4431095_4431716_-\|hydrolase	gnl\|CDD\|238494	cd01012, YcaC_related, YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.	4.87836e-69
NZ_AP014862.1\|WP_003456878.1\|4438509_4439928_-\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143467	cd07149, ALDH_y4uC, Uncharacterized ALDH (y4uC) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1. Uncharacterized aldehyde dehydrogenase (ORF name y4uC) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD.	0
NZ_AP014862.1\|WP_003456907.1\|4424575_4424860_+\|type-II-toxin-antitoxin-system-HigB-family-toxin	gnl\|CDD\|378301	pfam09907, HigB_toxin, HigB_toxin, RelE-like toxic component of a toxin-antitoxin system. HigB_toxin is a family of RelE-like prokaryotic proteins that function as mRNA interferases. HigB cleaves translated mRNA only, and cleavage depended on translation of the target RNAs. HigB belongs to the RelE super-family of RNases. The toxin-antitoxin gene-pair is induced by environmental stress factors.	1.14704e-30
NZ_AP014862.1\|WP_003456911.1\|4418186_4419695_-\|efflux-transporter-outer-membrane-subunit	gnl\|CDD\|273830	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. [Cellular processes, Detoxification, Transport and binding proteins, Porins].	1.03149e-85
NZ_AP014862.1\|WP_003456902.1\|4426217_4427702_-\|cytosine/purine/uracil/thiamine/allantoin-permease	gnl\|CDD\|224374	COG1457, CodB, Purine-cytosine permease and related proteins [Nucleotide transport and metabolism].	2.25488e-57
NZ_AP014862.1\|WP_003456898.1\|4428901_4430527_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	2.71903e-68
NZ_AP014862.1\|WP_003456909.1\|4421121_4421490_-\|nitrite-reductase-small-subunit-NirD	gnl\|CDD\|239605	cd03529, Rieske_NirD, Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. Members include bacterial and fungal proteins. The bacterial NirD contains a single Rieske domain while fungal proteins have a C-terminal Rieske domain in addition to several other domains. The fungal NirD is involved in nutrient acquisition, functioning at the soil/fungus interface to control nutrient exchange between the fungus and the host plant. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The Rieske [2Fe-2S] cluster is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In this family, only a few members contain these residues. Other members may have lost the ability to bind the Rieske [2Fe-2S] cluster.	2.11506e-49
NZ_AP014862.1\|WP_003456889.1\|4433522_4434257_-\|SDR-family-oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	3.53064e-60
NZ_AP014862.1\|WP_003456906.1\|4424868_4425270_+\|transcriptional-regulator	gnl\|CDD\|227786	COG5499, COG5499, Predicted transcription regulator containing HTH domain [Transcription].	9.29647e-21
NZ_AP014862.1\|WP_003456908.1\|4421489_4424042_-\|nitrite-reductase-large-subunit	gnl\|CDD\|184951	PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional.	0
NZ_AP014862.1\|WP_003456904.1\|4425273_4426113_-\|5-aminopentanamidase	gnl\|CDD\|143604	cd07580, nitrilase_2, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.	1.08322e-118
NZ_AP014862.1\|WP_003456900.1\|4427977_4428880_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	2.155e-33
NZ_AP014862.1\|WP_003456876.1\|4439943_4440987_-\|homoserine-dehydrogenase	gnl\|CDD\|235763	PRK06270, PRK06270, homoserine dehydrogenase; Provisional.	2.28655e-178
NZ_AP014862.1\|WP_003456880.1\|4438072_4438417_-\|RidA-family-protein	gnl\|CDD\|100007	cd06150, YjgF_YER057c_UK114_like_2, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.	8.72909e-39
NZ_AP014862.1\|WP_003456910.1\|4419864_4420896_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.70357e-68

>NZ_AP014862.1|WP_003456898.1|4428901_4430527_-|methyl-accepting-chemotaxis-protein
MDFRNLKIGLRAGLGFAVLTVLSLILGGVALYQMKRMDAMAQQVDQNWLPAIVTVNELNTATSRVRALTLSMLALRGNTALKSTSDRIDEIKRQAKDAEARYQSLISTETERVAFAEFQAALSRYLEQQQLVQSKMLQGARAEAIDIINTKLNDLASELTREMLDLTEINKAGAQRATQESDRVFAQAITLIAATMAVTAALTLAIALLLTRSIVRPLAQAVDVARTVASGDLTHRIQVTGSDEPAQLLHALREMQQNLRDTLQRIADSSTQLASASEELHAVTEDSTRGLHRQNTEIEQAATAVNEMTAAVEEVARNAVTTSEASRHTDRTAQDGRDRVRQTVESISQLANDVTVTSEEVGQLAVEVRNISQVLNVIRAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAHRTQQSTAEIEQMINGIQQGTEKAVGAMQNSMGRAQSTLQVAQAAGEALEDITRAIAEINERNLVIASASEEQAQVAREVDRNLVNIRDLAVQTSAGADQTSASSQELSRLAVDLNGLVAKFSV
>NZ_AP014862.1|WP_003456900.1|4427977_4428880_+|LysR-family-transcriptional-regulator
MLGNVSELDIRLIRVFLAVVEAGGVSAAQALLNTSQPTISAQLAALETRLGFRLCERGRAGFAVTPRGAQFLDAARRFLAAAEGFRVEVQQINRTLSGTLGVGLMGQLDPQANKRLALAISRLRARNQGLYFQFTELSSSFLEERLVNGHLDLAIGYFWRRLDSLDYLALFRETQIAYCGAGHPLYGQAGALPREAVTGYEWVWPSHPLPEMPAPTELERLTALTDSMDGAAMLILSGQHLGFLPQHYASGHVEQGQLRALNPDRLRYEVDFQVAVRRSARQGELVSAFLEALVDVFEVP
>NZ_AP014862.1|WP_003456902.1|4426217_4427702_-|cytosine/purine/uracil/thiamine/allantoin-permease
MSGSTPIARSAESGAGLAIEGRSIDYIPESERHGRLASQGPFWFLGNFHFFTLSIGFVGPSLGLSALWTTLAGALGIMFGTLFMAFHGSQGPEMGLPQMIQSRAQFGYRGVVLALLATLFVFVGFNLVNVTLIMEGLRNVFGLAPLPVACAVISVGALLAIYGHDLMHRAFKWALLVTLPLYTLVTLALMFGAGWGAAPAEPSTLGFNGVAFATQFAIAASYNIAYAPYVSDYSRYLPRHTVRWKLIAAVFLGASLSGAWMIGLGAWMAELLQASDALVALDRIGSALLPGLGHLLVVVSVLGFLPVIALNTYSAMLTLLTGIDSVRPIRPTPRARVLAILCITLLLLACVLSLRGSGIAILNTVLVLMLYFLVPWTAVNLVDYFFVRRGRYAIPHFFTPNGLYGAWQMRGILAYLVGFACMIPFFCIVDAGSGEAVFVGPVARLLDGVDIAWLVGLAVSGLTYLVLSRSLDLEAERLVIAGIREEDILASGQS
>NZ_AP014862.1|WP_003456904.1|4425273_4426113_-|5-aminopentanamidase
MSAYSVVACCQIAPRVGDLAYNRRIGERAIRDAARHGAQILVLPELAQSGYVFHDLEEARTLAETRDGPALQLWRALARELGVVIVGGFCEQLEEGGVANSAALVDASGVRAIYRKAHLWDGENTIFSAGTEPPPVVDTAFGRIALMICYDLEFPEWVRLPALAGAELICAPVNWPRAPRPPLERPAEVVRVQANASVNRLFIAACDRHGHERGVDWVQGSVIVDSDGYPLAGPVEEGGEQLLLATLNLAEARDKRISRHNHLHQDRRPGLYGEGGLLA
>NZ_AP014862.1|WP_003456906.1|4424868_4425270_+|transcriptional-regulator
MDDRLKLAKAHWHFVAPLLTPPRSEADYRTLVDALDELLDEIAGAPEHPLGGLAAQMGELIAAYDAVHFPMPKAPGREVLRLLMQEHGLSQGDLPEVGAQSVVSEILAGKRQLNVRQIRALVERFQVPADLFI
>NZ_AP014862.1|WP_003456907.1|4424575_4424860_+|type-II-toxin-antitoxin-system-HigB-family-toxin
MHIITQKRIWEAKERWPEAASALDAWYRLMGRLEPTDFADMKQTFPSVDKVGDKHVFDIGGNKLRLIAVVDYRFRKVFIRAVLDHREYDRNHWK
>NZ_AP014862.1|WP_003456908.1|4421489_4424042_-|nitrite-reductase-large-subunit
MNTSNPDLQTLVVIGNGMVGHHCVEQLIERGALDRYRIQVFSEEPLRAYDRVHLSEYFGGRDAESLALGEASLYQTPGVTLHLGVPVLEIDRARREVITAQGCVAYDKLVLATGSYPFVPPIEGAEGDSRLVYRTLADLDTIRAAATSARRGVVVGGGLLGLEAANALKSLGLDAHVVEFAPRLMPVQLDDQGGQALKARIEALGVGVHLSKATQSISAGEDYRYRMNFAGEDFLETDLIVFSAGIRPQDALARACGLELGPRGGIAIDGQCLSSDPDIFAIGECAAWNGSIFGLVAPGYQMARSVAAQLCGEEADPFIGADMSTKLKLLGVDVGSIGDAHGALPGARSYRFIDEATSSYRRLVVSADGKQALGAVLVGDNSYYDTLLQYVQNGIALPADPASLILPAGEGAPALGADALPATATVCSCHNVSKGAICSAIDNGCTDVAGVKACTKAATGCGGCAALLKQVVEHELSARGVAVDKSLCEHFAYTRQELYALVRVEGIETFEEMLAKHGRGHVGCEICKPAVGSILASCWNRPIQEPWLVPLQDTNDTFMANMQKNGTYSVVPRIPGGEITPEGLIAIGEVAKKYKLYTKITGGQRIDLFGAQLHELPDIWAELIAAGFETGHAYGKSTRTVKSCVGSTWCRYGVQDSVKMALDIEHRYKGLRSPHKLKFAVSGCTRECAEAQSKDVGVIATEKGWNLYVCGNGGMRPRHAELFATDLDDESLIRIIDRFLMFYIRTADKLQRTSVWRESLEGGLDYLKAVILDDSLGLAAELEAQMQLVVDRYECEWANAIQDPEKLKRFRTFVNDGRGDPDVHFVNERGQIRPAKAAELTLIPLAEEVV
>NZ_AP014862.1|WP_003456909.1|4421121_4421490_-|nitrite-reductase-small-subunit-NirD
MAPVNAQRIDVSPQWQVLCSRQDLVPNSGVVAWLDGAQVALFYLPDAEEGRQLFAVDNHDPHAGANVIGRGIVGHLGGDLVIASPLYKQHYRLEDGTCLEYPEQRLRTWPVRLNGEVVEVGL
>NZ_AP014862.1|WP_003456910.1|4419864_4420896_+|LysR-family-transcriptional-regulator
MDILFNMRAFVCVAETGSFTAAAQRMDLTTSYISRAVATLETHLRTRLLHRTTRRIALTEAGQRYLHRCEQILGYIEEAEAEASEAHARPVGNLKVHAMTGISQHYLIKAIAGYSEKYPDVSFDLTLANRTTDILDEGYDISVVIAQELPDSGFISKQLGTTYSVLCASPGYVEKHGAPRQPADLSRHRCLRLVNNVMALDKWLLDGPDGQELVPVTQTPFQVNTADAMTEAIKAGIGIGVLPVYSAISGLKDGSLMRVLPSHSLFPLGIYALYPSRQFLDAKIRTWVEFLREFLPERVAADEQAVAAFSLRLGTPGGAGLTANGAEVFAGKPAPTAERDSTS
>NZ_AP014862.1|WP_003456911.1|4418186_4419695_-|efflux-transporter-outer-membrane-subunit
MLRNPWSGLPGAGLFLVVLSLTACIDSQGIAPRSERLDVAAVDAGRAIRQAEREARWPDARWWRAYGDPQLDAWMEMALAESPTLAMAAARVRQARALVGAVESAERPQANLDASLQRKRWPDDYFYGPGDLARTTSWNNTSLLGFSYDLDLWGRERSRSAQALDQARMRGAEARLAALELQGNLVRSYIGLALLHGERDVAQASLAQQEQRLALAQRRLRDGIGTRLEVSRVEAELPETHRRIDALDESIALVRHQLAALAGRGPGEGDRLQRPRLDLQRMPGLPDKLPLELLGRRPDLVASRWAVAAEARGIEVAKAGFYPNIDLLGGVGSSATQGGMLDFLRYDSLTYHLGPALSLPVFDGGLRRGQLGAATAGYDLAVERYNQTLVNALRQVSDGLVRIHSLQQQRRLAAEAVAAARATCDLALLAQQRGLTGFDAVLDAQPPLFRRQLRQREVEAALLTAQADLLLALGGGVQPEPAGPDEADLVPRQPRLRFLPKP
>NZ_AP014862.1|WP_003456896.1|4431095_4431716_-|hydrolase
MATPYKRLDKNDAAVLLVDHQAGLLSLVRDFTPDEFKNNVLALADIAKFFNLPTILTTSFESGPNGPLVPELKAMFPDAPYIARHGNINAWDNEDFVKAVRATGKKQLIIAGVVTDVCVAFPTLSALAEGYDVFVVTDASGTFNPVVRDAALNRMSQAGAQLMNWFAVGCELHRDWRNDIEGFGGLLAGHLPAYANLMQSFSSNAK
>NZ_AP014862.1|WP_003456894.1|4431958_4432630_+|DUF4157-domain-containing-protein
MPGDAVHNDAPFTRLREAQLSAATPLNLLRQSILALSLFATAAVACPNGQSRVCVVTCFCAPGQPGDIAPLLEQVNGMAASSLQQWIQQSRAQMPESDLRPIPLHIRAQLEPYYDLRVLDTARYKVGVGQELDAASTLMQNPDVQAVTLVDVIVFRHPEDAEDDVALWAHELFHVQQYLDWGVEDFARRYTQDFNAVEAPAYKIQADVARAQKPGVTTAARQP
>NZ_AP014862.1|WP_003456891.1|4432783_4433449_-|GntR-family-transcriptional-regulator
MNYPIQDLNHAYLGSSIYGLLREALISGRFRPDDKLRIRDLAEQLGTSVTPVRDAILQLAKEQALVLKTPRDIRVPVLTREQYLEIRSIRLALEGLAAETAASRVTPAQLAMLESNIRDNLAAIHADDLAAALKLNQAFHYALADIAGMPLLGGFLDSLWMRTGPLIALAYGSFNERMAIDHHWEVLRALQQGNGTAAREAICTDILDGNERMIEFIEQKG
>NZ_AP014862.1|WP_003456889.1|4433522_4434257_-|SDR-family-oxidoreductase
MSHPKTLLLTGASRGIGHATVKHFNAAGWRVFTASRQDWVEDCPWAEGVLNHIHLDLEDIHSVEASLPLLREKLGGRLDALVNNAGISPKGEEGERLGVLASDYGTWLKVFNVNLFSTALLARGLFDELKAAQGSVINVTSIAGSRVHPFAGAAYACSKAALAALTREMAHDFGPYGVRVNAIAPGEIETSILSSGTEQIVERDIPLHRLGQPEEVAALVHFLCTRGASYVNGAEIHVNGGQHV
>NZ_AP014862.1|WP_003456886.1|4434527_4435559_+|ABC-transporter-substrate-binding-protein
MTKKVAVLALLSACATPLFADDSLTVVSFGGDNRQAQEKAFYQPFSASQGTTIRAADYNGEMAKIKVMADTGQTTWDVVEVETPELLRGCSEGLFEPLDWSRIGQQADFLPAAVSECGVGIFIWSTVLTYDATRLGGAPQSWADFWDLEKFPGKRGLRRGAKFTLEIALLADGVPQQDLYTTLATQEGITRAFRKLDQIKSSIQWWEAGAQPLQWLAAGDVVMTSAYNGRVTTAQKEGQPFSIQWNGSLYDLDHWAIVKGSPNKAQAERFIAFASEPEQQRDFATAIPYGPSNIHTLALLDAAIRQNLPTAPDNLANARAMDTEFWIDHGEELEERFNAWASK
>NZ_AP014862.1|WP_003456884.1|4435617_4436685_+|phosphotransferase
MSLQQAIVHDQLLQSAPAQVSDAEAAEVIQRHFALSGRLERLGGERDLNFRVLCEDGSSRLLKLSHPLEDPEVVDFHNGAMRRLEERDPELPVQRVYPTRDGHFMAEADIAGQRLIARLLSFVDGLPLHRVAVRSPALRRNLGEALARFDRALEGFDHPAADHELLWDMQHAQRLRPLLVYIEQGLRRDLVERCLDTYVRDVLPRLPGLRRQVIHNDLNPHNLIVDAAHPEQLRNILDFGDMVRAPRVNDLAVAASYQLDTSGDVLAPALEFIAAYHTCNPLEAAEVELLPELIATRLALTLCINSWRAVIHPENRDYILRNTERAWSSLERLVQVSHLEVHRRTRHACIQEIRP
>NZ_AP014862.1|WP_003456882.1|4436681_4438007_+|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme
MSMINGFSAADAERLSAHERSLIERRERLLGPAYRLFYERPLHTVRGEGVWLFDDQGRRYLDAYNNVASVGHCHPRVVSAISRQAAQLNTHTRYLQEGILDYAEQLLGTFPDYLERVMFTCTGSEANDLALRIARHHTGGTGVIITRFAYHGVTGDLAELSPSLGAGIRLPAHARTVLAPDAYRLGADQVAATLAADVRAAIDDLRAQGIRPAALLLDGIFSSDGVFPGPAGFLAEAVALAQAEGLLYIADEVQSGFARTGDAFWGFERHGVRPDLVTLGKPMGNGQPIAGLVGRAEVVDGFGRNLRYFNTFGGNPVSCAAGQAVLDVIRDEELQARARETGRYLLQGLGRLQQRHALIGDVRGAGLFLGVELVKDRASQAPAAAETRRVVNAMRERGVLISAAGPLENILKIRPLLAFEREHADLLLETLDAALDEVGAP
>NZ_AP014862.1|WP_003456880.1|4438072_4438417_-|RidA-family-protein
MIERFDEGRRMAQAVAYGPFFETAGICADDPSLDVRAQARQALASIDALLERVGVSRRDLVRVQAWLADYRDFDAFNEVYDAWIEGCPKPVRACVESGLGGYAVEIRVLAYRSA
>NZ_AP014862.1|WP_003456878.1|4438509_4439928_-|aldehyde-dehydrogenase-family-protein
MTLSSLALAKTAENTAIEVRNPFDGSHVGSVPCLTVADVPALLATAREGVRRCAALPRHRRAAILEEAARRVEQDAAAFAALIVAEAGKTLRQAQKEVKRCINTLKLSAEEARRNAGEVVPFDAYEGSESRQGWFSREPLGLIVAITPYNDPLNLVAHKLGPAIAGGNGVLLKPSELAPLSACRLVDCLREAGLPSEVVTLATGGADLGKALTSAREVRMISFTGGFVTGEHIARTAGLKKLAMDLGGNAPVLVLDDCELEATVESCVSGAFWAAGQNCIGTQRILVQASIYAEFRERFLARTRALVVGDPSRPDSDMGPMITEQAARATEQVVAEALAEGATLLCGQRREGALYHPTVLEGVDHRSRLWRQEVFAPVVVLESFETLEDAVALANEPEYSLHAGIFTRDLRRALWAARRIEAGGVMINDSSDYRFDAMPFGGFKYGSLGREGVRFAYEDMTQPKVVCINELS
>NZ_AP014862.1|WP_003456876.1|4439943_4440987_-|homoserine-dehydrogenase
MTEYKIALVGFGGVNRGLARLVAERNAAWQRELGFSLKIVGVTDLFLGSLIDRDGLDAAQLADLPAIKGAFATLPGGTAEAFNEAVIKQSGADLIAEATFTNPVDGEPAATFCRWALESGKHVVTTNKGPIALHGAELKALARRNGVAFEYEGAVMSGTPVIRMARQTLPGAGIVGFEGILNGTSNYVLTRMEEGLGFDAAVAKAQELGYAEADPTADVEGHDVRLKVVILANELLDAHLSVSDVACSGISALTPADLAQAREEGARWKLIGSAQRQADGSVSARVEARKLDLGHPLAGITGATNALAFNTELLGAVTLSGPGAGRIETAFALLSDIVALHATHGRQ

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Crispr_ID: NZ_AP014862_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP014862_9

4672872-4672971

Orphan

Consensus_repeat	Method
GTAGGAGCCGGCTTGCCGGCGAACGGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP014862_9

>merge|NZ_AP014862|9|4672872-4672971|CRISPRCasFinder
GTAGGAGCCGGCTTGCCGGCGAACGGCGCGGATTGCTTCGCGAGCAAGCTCGCTTACAGGGATGGGGTGATCGTAGGAGCCGGCTTGCCGGCGAATGGCG

>NZ_AP014862|9|8|4672872-4672971|CRISPRCasFinder
GTAGGAGCCGGCTTGCCGGCGAACGGCG	CGGATTGCTTCGCGAGCAAGCTCGCTTACAGGGATGGGGTGATC
GTAGGAGCCGGCTTGCCGGCGAATGGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014862.1\|WP_003450370.1\|4668829_4669867_+\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|377294
NZ_AP014862.1\|WP_003450353.1\|4680090_4681026_-\|rhodanese-related-sulfurtransferase	unknown	unknown	gnl\|CDD\|223982
NZ_AP014862.1\|WP_003450352.1\|4681179_4681485_-\|BolA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376601
NZ_AP014862.1\|WP_003450371.1\|4667580_4668537_-\|TAXI-family-TRAP-transporter-solute-binding-subunit	unknown	unknown	gnl\|CDD\|273982
NZ_AP014862.1\|WP_003450366.1\|4671608_4672712_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014862.1\|WP_096368055.1\|4675503_4676598_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225360
NZ_AP014862.1\|WP_162497262.1\|4679449_4680052_-\|DsbA-family-protein	unknown	unknown	gnl\|CDD\|226062
NZ_AP014862.1\|WP_003450377.1\|4662711_4663323_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237396
NZ_AP014862.1\|WP_003450376.1\|4663327_4664377_+\|chemotaxis-response-regulator-protein-glutamate-methylesterase	unknown	unknown	gnl\|CDD\|234828
NZ_AP014862.1\|WP_003450372.1\|4665473_4667501_-\|TRAP-transporter-permease	unknown	unknown	gnl\|CDD\|273983
NZ_AP014862.1\|WP_003450358.1\|4676752_4677634_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_AP014862.1\|WP_003450374.1\|4664678_4665086_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|350302
NZ_AP014862.1\|WP_003450368.1\|4669942_4671550_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_AP014862.1\|WP_003450351.1\|4681497_4682007_-\|DUF2059-domain-containing-protein	unknown	unknown	gnl\|CDD\|225725
NZ_AP014862.1\|WP_003450356.1\|4677675_4679457_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_AP014862.1\|WP_003450373.1\|4665090_4665477_-\|DUF1850-domain-containing-protein	unknown	unknown	gnl\|CDD\|227073
NZ_AP014862.1\|WP_003450375.1\|4664444_4664678_+\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|226863
NZ_AP014862.1\|WP_003450362.1\|4674546_4675212_-\|maleylacetoacetate-isomerase	unknown	unknown	gnl\|CDD\|273527
NZ_AP014862.1\|WP_003450350.1\|4682284_4683295_+\|DUF2804-domain-containing-protein	unknown	unknown	gnl\|CDD\|378522
NZ_AP014862.1\|WP_003450364.1\|4673000_4674461_-\|sodium-dependent-transporter	unknown	unknown	gnl\|CDD\|271367

Protein	Function_ID	Function_description	E-value
NZ_AP014862.1\|WP_003450370.1\|4668829_4669867_+\|metal-dependent-hydrolase	gnl\|CDD\|377294	pfam04307, YdjM, LexA-binding, inner membrane-associated putative hydrolase. YdjM is a family of putative LexA-binding proteins. Members are predicted to be membrane-bound metal-dependent hydrolases that may be acting as phospholipases. It is a member of the SOS network, that rescues cells from UV and other DNA-damage. Expression of YdjM is regulated by LexA.	1.93301e-31
NZ_AP014862.1\|WP_003450353.1\|4680090_4681026_-\|rhodanese-related-sulfurtransferase	gnl\|CDD\|223982	COG1054, COG1054, Predicted sulfurtransferase [General function prediction only].	6.35981e-176
NZ_AP014862.1\|WP_003450352.1\|4681179_4681485_-\|BolA-family-transcriptional-regulator	gnl\|CDD\|376601	pfam01722, BolA, BolA-like protein. This family consist of the morphoprotein BolA from E. coli and its various homologs. In E. coli over expression of this protein causes round morphology and may be involved in switching the cell between elongation and septation systems during cell division. The expression of BolA is growth rate regulated and is induced during the transition into the the stationary phase. BolA is also induced by stress during early stages of growth and may have a general role in stress response. It has also been suggested that BolA can induce the transcription of penicillin binding proteins 6 and 5.	1.21839e-29
NZ_AP014862.1\|WP_003450371.1\|4667580_4668537_-\|TAXI-family-TRAP-transporter-solute-binding-subunit	gnl\|CDD\|273982	TIGR02122, 31_kDa_immunogenic_protein_precursor., TRAP transporter solute receptor, TAXI family. This family is one of at least three major families of extracytoplasmic solute receptor (ESR) for TRAP (Tripartite ATP-independent Periplasmic Transporter) transporters. The others are the DctP (TIGR00787) and SmoM (pfam03480) families. These transporters are secondary (driven by an ion gradient) but composed of three polypeptides, although in some species the 4-TM and 12-TM integral membrane proteins are fused. Substrates for this transporter family are not fully characterized but, besides C4 dicarboxylates, may include mannitol and other compounds. [Transport and binding proteins, Unknown substrate].	2.56071e-132
NZ_AP014862.1\|WP_003450350.1\|4682284_4683295_+\|DUF2804-domain-containing-protein	gnl\|CDD\|378522	pfam10974, DUF2804, Protein of unknown function (DUF2804). This is a family of proteins with unknown function.	5.22737e-109
NZ_AP014862.1\|WP_096368055.1\|4675503_4676598_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225360	COG2771, CsgD, DNA-binding HTH domain-containing proteins [Transcription].	2.21971e-11
NZ_AP014862.1\|WP_162497262.1\|4679449_4680052_-\|DsbA-family-protein	gnl\|CDD\|226062	COG3531, COG3531, Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones].	3.06501e-63
NZ_AP014862.1\|WP_003450377.1\|4662711_4663323_+\|hypothetical-protein	gnl\|CDD\|237396	PRK13487, PRK13487, chemoreceptor glutamine deamidase CheD; Provisional.	8.22729e-77
NZ_AP014862.1\|WP_003450376.1\|4663327_4664377_+\|chemotaxis-response-regulator-protein-glutamate-methylesterase	gnl\|CDD\|234828	PRK00742, PRK00742, chemotaxis-specific protein-glutamate methyltransferase CheB.	0
NZ_AP014862.1\|WP_003450372.1\|4665473_4667501_-\|TRAP-transporter-permease	gnl\|CDD\|273983	TIGR02123, conserved_inner_membrane_protein, TRAP transporter, 4TM/12TM fusion protein. In some species, the 12-transmembrane spanning and 4-transmembrane spanning components of tripartite ATP-independent periplasmic (TRAP)-type transporters are fused. This model describes such transporters, found in the Archaea and in Bacteria. [Transport and binding proteins, Unknown substrate].	0
NZ_AP014862.1\|WP_003450358.1\|4676752_4677634_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	0.00688088
NZ_AP014862.1\|WP_003450374.1\|4664678_4665086_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|350302	cd18735, PIN_HiVapC1-like, VapC-like PIN domain of Haemophilus influenzae VapC1 and related proteins. Haemophilus influenzae VapC1 has endonucleolytic activity with RNA, it cleaves initiator tRNA between the anticodon stem and loop, but does not cleave mRNA, rRNA or tmRNA, and has no activity on ssDNA or dsDNA. This subfamily belongs to the PIN_VapC4-5_FitB-like subfamily of the VapC (virulence-associated protein C)-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC TA systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. FitB is a toxin of the FitAB TA system. Other members of the VapC-like nuclease family include eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	1.40848e-69
NZ_AP014862.1\|WP_003450368.1\|4669942_4671550_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	3.5617e-70
NZ_AP014862.1\|WP_003450351.1\|4681497_4682007_-\|DUF2059-domain-containing-protein	gnl\|CDD\|225725	COG3184, COG3184, Uncharacterized protein conserved in bacteria [Function unknown].	5.96781e-26
NZ_AP014862.1\|WP_003450356.1\|4677675_4679457_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	4.95429e-140
NZ_AP014862.1\|WP_003450373.1\|4665090_4665477_-\|DUF1850-domain-containing-protein	gnl\|CDD\|227073	COG4729, COG4729, Uncharacterized conserved protein [Function unknown].	4.86738e-47
NZ_AP014862.1\|WP_003450375.1\|4664444_4664678_+\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	gnl\|CDD\|226863	COG4456, VagC, Virulence-associated protein and related proteins [Function unknown].	2.28376e-14
NZ_AP014862.1\|WP_003450362.1\|4674546_4675212_-\|maleylacetoacetate-isomerase	gnl\|CDD\|273527	TIGR01262, Maleylacetoacetate_isomerase, maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism. [Energy metabolism, Amino acids and amines].	8.16043e-101
NZ_AP014862.1\|WP_003450364.1\|4673000_4674461_-\|sodium-dependent-transporter	gnl\|CDD\|271367	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain. SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. An arrangement of 12 transmembrane (TM) helices appears to be as a common topological motif for eukaryotic and some prokaryotic and archaeal NTTs. However, this subfamily which contains the majority of bacterial members and some archaeal members, appears to contain only 11 TMs; for example the functional Fusobacterium nucleatum tyrosine transporter Tyt1.	0

>NZ_AP014862.1|WP_003450366.1|4671608_4672712_-|hypothetical-protein
MKLTLHFDGSVAINTLRQAILAAGENTTIHYSAAHDLDASNLLSVLSAAGAEKNLVLGFDGARLDPRSLQQAVSFAGDRTRVDIGAAQAVKPAALITAIAAAGDGKSLRASFSGARATEEALRAALDAAGRQVDIGLGASQSLTLDTLLATLQAAGDERNLAVELGGAQPAANLIQALEAAGASTDIAINTAHALDRDELQALMLGAGDGKHLSLSFNGGQVDEAQLPQLVAAAGTNTRIRLNTAEAIAAGRLLAAIEATGNTRQLSIEYNGAQIPAAGLVQAIEAAGISTSVSVSSAQGVDVGGLASALEAAGATKKLDLQFNAGQLPAADLLRLVEAAGHRCDLAISGAQALPLPVLKDVLRAAA
>NZ_AP014862.1|WP_003450368.1|4669942_4671550_+|methyl-accepting-chemotaxis-protein
MKIKQRMVASGVISVLAAALLGSIGYWGQTRLAGSLAENQLSVTALRNHLEGDMMHDALRADVLAALVVQPGDEAAARQVREDLAEHSQWFRRTLGDNARLPLPGEIQSAIAESQPALERYIGEAERIVELALRDTQAARAELPAFDQSFGELEEKNEALSGRIEAHATKTREDGEAAVRSAAAWLVGGLLLVIGLLCLVTGQLMRTVLRPLEKTVGVARAIAQGNLLQPVSIDSDDEAGQLQRALAEMQDNLRQMIASIRSESEELRGTAHHLSETSQRIVDGAGEQSDSATSMAAAMEQMIANIGQIAAHARNAQGISAHSESLAGSGGQVILGVVEGMSRIAEAVNRSSTTITALGQSSEEIHSIIQVIKGIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAARTAQSTQEITGMIQRIRETTQQAVDSMQTGVERVQFGVGLARQAGDSISEIRDGAQRAAEVVEEISQTIGEQSKASNEVAHRMELIAQMSRSNSDAMRELARSAERLDQVASTMQSSVARFQI
>NZ_AP014862.1|WP_003450370.1|4668829_4669867_+|metal-dependent-hydrolase
MDSITQAVLGATLQGAMLGRWQGRKALLYGAALGTLPDLDVVIRYSDAVAAMTYHRGFSHSIFVLSALAVLLTLLIRRWRPNPDYSTQRLFIALWLVLVTHPLLDSFTSYGTQLFWPLQTPPIAWSSVFIIDPLYTLPLLLAVLAGLAFGLKDRTPRLPLAALALSSLYLAFSLGGKFMAEQRVADVLEREGIRPQAVFSSPTPFNTLLWRVVVLEGEDYHEALVSWFDQAPPVLERIPRGTDLARGLRDSPQHLRLAWFTHGILRYDRIDQALVVTDLRLGMTGFHPFRFILAEHRDGRWQPLAQARRWPTDRGDAERLKLLWQRVWQQDQAVPLASWAGLLRQ
>NZ_AP014862.1|WP_003450371.1|4667580_4668537_-|TAXI-family-TRAP-transporter-solute-binding-subunit
MRLRHSIRSIAFVSALAASAAALAAPTFINILTGGTSGVYYPIGVGLSQIYGGGIEGSKTSVQATKASVENLNLLQAGRGELALALGDSVADAWNGVEDAGFKAPLKKLRAIAATYPNYIQIVASKESGIQTLADLKGKRISVGAPKSGTELNARAIFAAAGLSYEDMGKVEFLPYAESVELIKNRQLDATLQSSGLGMAAIRDLAASMPISFVEVPAEVTAKIGNAAYQPATIPARTYDGQELDVKTVAITNILVTHEGVSDELAYQMTKLMFDNLPRLGNAHSAAKDIRLDSAAQNLPIPLHPGAERFYKEAGVLK
>NZ_AP014862.1|WP_003450372.1|4665473_4667501_-|TRAP-transporter-permease
MTQDHSQLAASVGDWPRTLFAVALLFSVFQIVTAAFHPVSTQILRAVHVGFLLMLVFLSYPGWGRGRPWQPLAWVLALAGAATSAYQWVFEADLIQRSGDLTGADMVIGLLLIALVFEAARRVMGIALPLICGLFLAYGLLGQYLPGDLAHRGYGLDQIVNQLSFGTEGLYGTPTYVSATYIFLFILFGAFLEQAGMIRLFTDFALGLFGHKLGGPAKVSVVSSALMGTITGSGVANVVTTGQFTIPLMKRFGYQPAFAGGVEATASMGSQIMPPVMGAVAFIMAETINVPYFEVAKAALIPALLYFGSVFWMVHLEARRSNLVGLPKDQCPSAWGAVKERWYLLIPLAVLIYLLFSGRTPLFSGTVGLALTAIVILGSAIILRVSSFGLRIAFWIALGLLCAGFFQLGIGVVFGVIGLLVAACWFLKGGRETLLLCLHALVEGARHAVPVGIACALVGVIIGVVSLTGAASTFAGYILAIGQENLFLSLVLTMLTCLVLGMGIPTIPNYIITSSIAAPALLELGVPLLVSHMFVFYFGIMADLTPPVALACFAAAPIAREKGLLISLWAVRIAVAGFVVPFMAVYDPALMLQGGGWGATLYMLFKAALAIGLWGAAFTGCLQRPMAHWERLLAFVAGGSLILAAPITDELGFVLAALFFAQHLWRARRAGATAA
>NZ_AP014862.1|WP_003450373.1|4665090_4665477_-|DUF1850-domain-containing-protein
MIALCLGLAGSVWATLPGEPFTLAWRHSVEKIRWEEDYRVTSAGLRLDEARVRGSGAGMEIPEGAVLRDGAWHYRRDLPPLQPLRLGRTPEAGDYQLCRDGRCRDLAHWLGPPRADRPAVELWSCSPD
>NZ_AP014862.1|WP_003450374.1|4664678_4665086_+|type-II-toxin-antitoxin-system-VapC-family-toxin
MSVRYLLDTNICIYIAKHNPARVRERFAAHASAELGMSVITLGELRFGAEKSQSRERALAVIERLESLIQVLPLEETAGAHYGQIRAELSARGQIIGGNDLWIAAQAQAADLTLVSNNLREFQRIPDLRLENWAD
>NZ_AP014862.1|WP_003450375.1|4664444_4664678_+|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein
MPFAKLFQSGNSQAVRLPKEFRFKNVDRVEIFRRGNEIVLREISTNATDIFDALVEMPDDFMEGGRDDLPPQEREDF
>NZ_AP014862.1|WP_003450376.1|4663327_4664377_+|chemotaxis-response-regulator-protein-glutamate-methylesterase
MAIKVLVVDDSALIRSLLSEIVRADHELQLVGVAPDAYVARDLIKQHSPDVITLDVEMPRMDGLTFLDKLMKGRPTPVVMISSLTERGSEATLKALELGAIDFVAKPRLGIAEGMQAYAEEIRAKLKVAARARLVRHRSPQPRAAEPALPIVGTEKLIAIGASTGGTEAIKEVLLGLPADSPGVVITQHMPAGFTRSFAARLDKLCRLRVAEARDGDRILPGTALLAPGGLHMEVTRSGANYLARLSDAPQVNGHRPAVDVMFHSAARCAGRNLIAALLTGMGRDGARGLLAIREAGGYTLAQDEASSVVYGMPREAAEIGAAEDILPLEAIGPALLAQARRRGSGNRV
>NZ_AP014862.1|WP_003450377.1|4662711_4663323_+|hypothetical-protein
MKGETLGAIAANRYFDPDFQLPAVKVLPGEFYATAEDQVLVAALGSCVAVCLFDRQRGIGGMNQFLLPDPGPGSGLASAATHHGVRIMEQLGEELLRLGARRHHLVAKVFGAANLHDELLRFDTTLRTVEFVHSYLDTEGVTLLAEDVMGAQARKVYVFPSSGKVLVKKLKGLHNDTLLQRELEYLLYLKRGEALGPYDLFKE
>NZ_AP014862.1|WP_003450364.1|4673000_4674461_-|sodium-dependent-transporter
MTREKPKNLWLSRWGFILAATGSAVGLGNIWKFPYITGEYGGGAFVLMYLACILAIGIPVMMTEIALGRRGRGSPIDAIARVVRENNGNPLWRGVGLMAMLAGFMILCFYVVVDGWAFAYTWKMLSGALVASSVDSLAQVFEGHNANPWQLGGWSVLVSLLTLWIVGKGVQAGVERAFRWMMPGLAVMLLVLVGYAWTSGSFRQGFDFLFTFDATKLTGEALLAALGHAFFTLSLASGAILTYGSYLPDGQSIARTTFVVAIADTCVALLAGLAIFPVIFANGMSPSAGPGLIFMSLPLAFQQMPMGTLFGVLFFAMVSVAALTSAISMIEAVVAYLNEKYGVSRGRAALASGAVLLVISLLAMLSFNVGAEWKLFGTTLFDGLDYLTSRWMMPLGGILMVILAGYCLRPEIMRNELGLGAAGYALWLFMVRYVSPVLILMVFLNALGWLSFDPIARWYWIVGAIGVLALVGELLAPRVRMELVRG
>NZ_AP014862.1|WP_003450362.1|4674546_4675212_-|maleylacetoacetate-isomerase
MTTELTLYGYWRSSAAYRVRIALELKGLAYRQEPVHLVRNGGEQHQEAYRELNPQGLLPLLVDAGNAGGEVRIAQSLAILEYLEEAFPVPALLPAEPAQRALVRSLALHIACDLHPLNNLRVLQYLEAELGVGDAARKAWYRHWVGLGLAAVEKGLEPFGGRLSLGSRPGYLEACLIPQVYNARRFDCDLSAYPRILDIAARCDALEAFRKAAPEVQPDAQ
>NZ_AP014862.1|WP_096368055.1|4675503_4676598_+|helix-turn-helix-transcriptional-regulator
MGLDERYDTLVNLCYECVLDAAAWKPLLERLAAATGYQMGALLFLDRHAQRPRVSSLNLCDPASVDAYNSYYHQYDPAKEMLVPRPVGSWYHDREDLAPQRIRRDPYYQEFHLPYGMNAISCIKLHEQEDAGTYLSLLTAVGAALPEPGHRALLTRLSPHLLRAAQLSERLQDLQREVARRDLLLDRHGAPVWLLNGEGRMLFCNREAEQRLGQPDYPLRLRQGRLHGQALDHRLQGLIRQAAGRDGKRRAGWLALGEGSPLQVLVTPVPEASALAAPHRGPLALVTVLDSRPRKALLVELFQLTPAELRLVELLVQGLSPEDCAERLQVSINTIRTQLRALFRKTDTRRQAELLQLLARLQGA
>NZ_AP014862.1|WP_003450358.1|4676752_4677634_+|class-I-SAM-dependent-methyltransferase
MEEEELNRSIREQRQLREELAHIKSERERLQLDRPAPWPEAPSPSNILPFPVRPVASPRMHCGDPWLLDYLYGVPTEALHGLPEERVRQLFEFATSAQAARALRSRRRTLARYLDDTCQRLGLDARMLCVAGGHFREGELARELRHGRFGEMLVIDDDGARLERVHAAYGHLGVTTRQMQLDQLLTAASDLEGFDLVYSAGITELLDDRHCERLVFRLFQALRPGGRLLLANFRPGVPAIGFLEGLLDWHPRYRQDAQMLSLLDGVDYNEIASARVFHDVGQRVAFLEAVKYG
>NZ_AP014862.1|WP_003450356.1|4677675_4679457_-|ABC-transporter-ATP-binding-protein
MPDRLSWAEIRRLALRHKKALWLANFAAVLATLCSVPIPLLLPLLVDEVLLERGDAALRVMDHLLPLAWENAVGYIGLMLVVTLLLRGMALVFNVLQARLFARLAKDIVYRIRIRLIERLKRVSLGEYESLGSGTVTAHLVTDLDTLDKFVGETLSRFLVAILTLTGTAAILVWMHWKLALLILLFNPLVIWSTVQLGKKVKHLKKLENDSTARFTQALTETLEAVQEVRTSNRQGFFFGRLGQRAQEVRDYAVASQWKSDAAGRTSGLLFQFGIDFFRAAAMLTVLFSDLSIGQMLAVFSYLWFMIGPVEQLLGLQYSYYAAGAALGRINELLARADEPQYPQVVDPFKGRETVGIEVSGLRFAYTDEPVLDSLDLTIAPGEKVAIVGASGGGKSTLVQLLLGLYQPQAGTIRYGGCRLEEIGLAQVRDNVAVVLQHPALFNDSVRANLTMGRERTDEACWRALEIAQLAETIRNLPQGLDSVVGRSGVRLSGGQRQRLAIARMVLAEPKVVILDEATSALDAATEYALHQALGRFLNGRTTLIIAHRLSAVKQADRVLVFDGGHIAEDGDHQQLIAEGGLYAKLYGHLQQG
>NZ_AP014862.1|WP_162497262.1|4679449_4680052_-|DsbA-family-protein
MCSWCWGFAPVAQALAEQAAEAGVPLHLVAGGLRAGHGAALDANTRRYILEHWQAVSLATGQPFRFEGALPEGFVYDTEPACRALVVARTLAPELAWPLVRLIQHAFYAEGRDVTLASTLVALAEQAGIPRIEFAHAFDDAASHESTVADFTWVQDLGIAGFPTLLAEREGQLALLTNGYQPLEELAPLLGRWLERGAHA
>NZ_AP014862.1|WP_003450353.1|4680090_4681026_-|rhodanese-related-sulfurtransferase
MTQIVVAALYKFVTLKDYVALREPLLKTLLDNGVRGTLLLAEEGINGTVSGTREAIDALLAWLKVDPRFADLEHKESYCSEQPFYRTKVKLKKEIVTLGVPGVDPNQQVGTYVAPKDWNALISDPEVLLIDTRNDYEVAIGTFEGAVDPKTRSFREFPEYIKAHYDPAVHKKVAMFCTGGIRCEKASSYMLNQGFEEVFHLQGGILKYLEEVPREESLWRGDCFVFDNRVTVRHDLSEGDYDQCHACRNPISVEDRQSEHFAPGISCPHCWDSLSEKTRASARERQKQIELARARNLPHPIGRDPRQALEN
>NZ_AP014862.1|WP_003450352.1|4681179_4681485_-|BolA-family-transcriptional-regulator
MSMRDRILSALEALEPLHLEVLDESHMHSRGLETHYKAVIVSPVFAGLNAVKRHQKVYGTLGDLMGQFHALALHTYTPEEWAEQGRAPESPTCQGGSKRDH
>NZ_AP014862.1|WP_003450351.1|4681497_4682007_-|DUF2059-domain-containing-protein
MTKLRVLCTAVLLACASGQVLADAASHAADAERFLKLARADKLTVPVYAQVQQMFQQRFEQAQAPASKKATLESYQAKANAALDKAVGWDKLKPELVKIYTSNFTESELKDLIAFYESPLGRKVLEKMPTLTQQSAQLTQSRLESAVPEVNKLLSDMGNELQPQAKKQQ
>NZ_AP014862.1|WP_003450350.1|4682284_4683295_+|DUF2804-domain-containing-protein
MNSHISTLSPECPALCDERGALAPGAIGWSSRPRLNCAIPGHFGRRKRWNHWCLTTPHWMLSLTVADLDYLGYGAAYFLDLDSGRAVAHTQLRPFARGCHLPDTPVESHGFEHSRLRIRIDEHPGRLSLRVEAPDLGGQRLQATLDVLRPAHLDSVNLVAPLPGGCFHASSRQLGLPVSGELQLGDHHYPCVSGQSFAALDFGRGVWPFNSHWTRAAFAAPGGIAGNFGAGWTDTSGLTENALWFGGRLAKLDRPVQIEQAPSDPLAPWRFFTQCRRVDLTFTPRQLHRAHPRLGPLYADTRQWFGRFDGLLRSPDGERVPVANALGWLGSTRARW

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Crispr_ID: NZ_AP014862_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP014862_10

4812802-4812913

Orphan

Consensus_repeat	Method
GTAGCAGCCGGCTTGCCGGCGAATCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP014862_10

>merge|NZ_AP014862|10|4812802-4812913|CRISPRCasFinder
GTAGCAGCCGGCTTGCCGGCGAATCGCGTGGATGGCTTCGCGGGCAAGCCCACTCCTACAGCGACTCCGTGCCCGGCCTGGTCTCGTAGGAGCCGGCTTGCCGGCGAATCGC

>NZ_AP014862|10|9|4812802-4812913|CRISPRCasFinder
GTAGCAGCCGGCTTGCCGGCGAATCGC	GTGGATGGCTTCGCGGGCAAGCCCACTCCTACAGCGACTCCGTGCCCGGCCTGGTCTC
GTAGGAGCCGGCTTGCCGGCGAATCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014862.1\|WP_004421293.1\|4816947_4817388_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014862.1\|WP_004421298.1\|4811963_4812764_+\|sel1-repeat-family-protein	unknown	unknown	gnl\|CDD\|276807
NZ_AP014862.1\|WP_004421291.1\|4817798_4818854_-\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
NZ_AP014862.1\|WP_004421300.1\|4810848_4811760_-\|cysteine-synthase-CysM	unknown	unknown	gnl\|CDD\|236972
NZ_AP014862.1\|WP_004421306.1\|4807178_4809425_-\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|223394
NZ_AP014862.1\|WP_004421311.1\|4805695_4806235_-\|DUF2058-domain-containing-protein	unknown	unknown	gnl\|CDD\|378260
NZ_AP014862.1\|WP_036992227.1\|4809509_4810862_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_AP014862.1\|WP_036992228.1\|4803625_4804288_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014862.1\|WP_004421315.1\|4805361_4805637_+\|Rho-specific-inhibitor-of-transcription-termination-(YaeO)	unknown	unknown	gnl\|CDD\|369197
NZ_AP014862.1\|WP_131679669.1\|4819211_4819880_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014862.1\|WP_004421294.1\|4815929_4816916_+\|2-hydroxyacid-dehydrogenase	unknown	unknown	gnl\|CDD\|240659
NZ_AP014862.1\|WP_131679668.1\|4819879_4820440_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014862.1\|WP_004421289.1\|4821579_4822374_-\|DNA-adenine-methylase	unknown	unknown	gnl\|CDD\|223415
NZ_AP014862.1\|WP_004421292.1\|4817384_4817792_+\|META-domain-containing-protein	unknown	unknown	gnl\|CDD\|377111
NZ_AP014862.1\|WP_036992229.1\|4803258_4803534_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379188
NZ_AP014862.1\|WP_004421308.1\|4806255_4807086_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_AP014862.1\|WP_004421296.1\|4813111_4815868_+\|response-regulator	unknown	unknown	gnl\|CDD\|236848
NZ_AP014862.1\|WP_081608058.1\|4820536_4821523_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293817
NZ_AP014862.1\|WP_131679670.1\|4804292_4805021_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377618
NZ_AP014862.1\|WP_036992225.1\|4822661_4822877_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_AP014862.1\|WP_004421298.1\|4811963_4812764_+\|sel1-repeat-family-protein	gnl\|CDD\|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	3.87035e-26
NZ_AP014862.1\|WP_004421291.1\|4817798_4818854_-\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
NZ_AP014862.1\|WP_004421300.1\|4810848_4811760_-\|cysteine-synthase-CysM	gnl\|CDD\|236972	PRK11761, cysM, cysteine synthase CysM.	0
NZ_AP014862.1\|WP_004421306.1\|4807178_4809425_-\|GTP-diphosphokinase	gnl\|CDD\|223394	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription].	0
NZ_AP014862.1\|WP_004421311.1\|4805695_4806235_-\|DUF2058-domain-containing-protein	gnl\|CDD\|378260	pfam09831, DUF2058, Uncharacterized protein conserved in bacteria (DUF2058). This domain, found in various prokaryotic proteins, has no known function.	9.25708e-70
NZ_AP014862.1\|WP_036992227.1\|4809509_4810862_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_AP014862.1\|WP_081608058.1\|4820536_4821523_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293817	cd07731, ComA-like_MBL-fold, Competence protein ComA, ComEC and related proteins; MBL-fold metallo hydrolase domain. This subgroup includes proteins required for natural transformation competence including Neisseria gonorrhoeae ComA, Pseudomonas stutzeri ComA, Bacillus subtilis ComEC (also known as ComE operon protein 3) and Haemophilus influenza ORF2 encoded by the rec-2 gene, as well as Escherichia coli YcaI which does not mediate spontaneous plasmid transformation on nutrient-containing agar plates. It also includes the phosphorylcholine esterase (Pce) domain of choline-binding protein e from streptococcus pneumonia. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. .	1.93492e-10
NZ_AP014862.1\|WP_004421315.1\|4805361_4805637_+\|Rho-specific-inhibitor-of-transcription-termination-(YaeO)	gnl\|CDD\|369197	pfam07073, ROF, Modulator of Rho-dependent transcription termination (ROF). This family consists of several bacterial modulator of Rho-dependent transcription termination (ROF) proteins. ROF binds transcription termination factor Rho and inhibits Rho-dependent termination in vivo.	6.71778e-36
NZ_AP014862.1\|WP_004421294.1\|4815929_4816916_+\|2-hydroxyacid-dehydrogenase	gnl\|CDD\|240659	cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains. D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain.	0
NZ_AP014862.1\|WP_004421289.1\|4821579_4822374_-\|DNA-adenine-methylase	gnl\|CDD\|223415	COG0338, Dam, Site-specific DNA methylase [DNA replication, recombination, and repair].	7.85022e-39
NZ_AP014862.1\|WP_004421292.1\|4817384_4817792_+\|META-domain-containing-protein	gnl\|CDD\|377111	pfam03724, META, META domain. Small domain family found in proteins of of unknown function. Some are secreted and implicated in motility in bacteria. Also occurs in Leishmania spp. as an essential gene. Over-expression in L.amazonensis increases virulence. A pair of cysteine residues show correlated conservation, suggesting that they form a disulphide bond.	2.10785e-39
NZ_AP014862.1\|WP_036992229.1\|4803258_4803534_+\|hypothetical-protein	gnl\|CDD\|379188	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain. This is a helix-turn-helix domain that probably binds to DNA.	0.00285892
NZ_AP014862.1\|WP_004421308.1\|4806255_4807086_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.07556e-150
NZ_AP014862.1\|WP_004421296.1\|4813111_4815868_+\|response-regulator	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NZ_AP014862.1\|WP_131679670.1\|4804292_4805021_+\|hypothetical-protein	gnl\|CDD\|377618	pfam06160, EzrA, Septation ring formation regulator, EzrA. During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation.	0.00752521

>NZ_AP014862.1|WP_004421298.1|4811963_4812764_+|sel1-repeat-family-protein
MTMPLTRTETLDSEALRQRLATDPHQAARILLDAAREGLVPAQTLLGQILLDGTGIERDPALARTWFRIAAEGGDAMARNMLGRCLEQGWGGEVDLTAAAREYHLAMASGLDWGYYNYAALLASGRGVEPDPAGAFQLYLKAAEMGHAKAMNFVGRFYDEGIGIAPSSEQARYWYQRSAEAGDFRGQFSHAAALADRGYLEEALRWLDKALAGGNLNFLRASRARLAQAPQPQIRALALPYHQRAAELGDDSDRRALADHVRNLLP
>NZ_AP014862.1|WP_004421300.1|4810848_4811760_-|cysteine-synthase-CysM
MTLQYPTIADCVGQTPLVRLQRLAGDTSNTLLVKLEGNNPAGSVKDRPALSMITRAELRGDIQPGDTLIEATSGNTGIALAMAAAIKGYKMILIMPDNMSAERKAAMTAYGAELVLVSREEGMEGARDLAESLQRGGRGKVLDQFANGDNPEAHYVGTGPEIWQQTQGTITHFISSMGTTGTIMGVSRYLKEQNPNIQIVGLQPQEGSAIPGIRRWPQEYLPKIYQADRVDRVIDMAQAEAESTMRRLAREEGIFCGVSSGGAVAAMLRLSREVENATLVAIICDRGDRYLSTGIYDAPHVPA
>NZ_AP014862.1|WP_036992227.1|4809509_4810862_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MSRRNAGLRFQPSGGARTPQVPVGKKQRLRIERLAHDGRGIAFLEGRTWFVAGALPEEEVEARVLAARSQVVEARAERVLVASPLRLAPPCAHAGHCGGCTLQHLPHGEQLALKQRTLAEQLARFADLAPATWAAPLVGTEFGYRRRARIAVRWDARARQLEVGFRAASSQAIVGIEDCLVLVQPLQPLLRGLSDLLRGFDKPQAVGHVELFQGTASALLLRHTQPLAEADLLRLRAFCQAQGAQLWLQGEGEPQPDQADARLAYRLERWNLELDYRPGDFVQVNAAVNEAMVAQALDWMNPQPGDRVLDLFCGLGNFALPLARQVREVVAVEGVEAMVQRARGNARANGLENLQVFQADLSNPLADAAWARQGFDAVLLDPPRDGAFEAVRQMAATGARRVVYVSCNPATLARDSAELVKQGYQLKKAGILDMFPQTAHVEAMALFEAG
>NZ_AP014862.1|WP_004421306.1|4807178_4809425_-|GTP-diphosphokinase
MVQVRAQQPVNTDGSINLEAWLDHVISLDPVLDRAVLKEACEFARDAEQQAIAAQNRWAEGTSSFQTGLEIAEILADLKLDQESLVAAVIYRGVREGKIQLQAVQQRFGAVVAKLIEGVLRMAAISASLNPRQSMVLGAQAQVENLRKMLVAMVDDVRVALIKLAERTCAIREVKNADEEKRHRVAREVFDIYAPLAHRLGIGHIKWELEDLSFRYLEPEQYKQIAKLLHERRLDREQYIADVMKQLREELAATGIKADISGRAKHIYSIWRKMQRKGLQFSQIYDVRAVRVLVPEVRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPDGKVLEVQIRTHAMHEEAELGVCAHWRYKGTDVKSSSDHYEEKIAWLRQVLEWHEELGDIGGLAEQLRVDIEPDRVYVFTPDGHAIDLPKGATPLDFAYRVHTEIGHNCRGAKVNGRIVPLNYGLQTGEQVEIITGKNGAPSRDWLNPNLGYITTSRARAKIVHWFKLQARDQNVAAGKAMLERELQRLALPPVDFEKLAEKCNLRTAEDMYAALGAGDLRLAHVVNGAQALAEPERGHNEQLELIPRKATAYKPGKRGDVQIEGVGNLLTQMAGCCQPVPGDPIVGYITLGRGVSIHRQDCASALQLAGREPERMIQVSWGPVPVQTYPVDIVIRAYDRSGLLRDVSQVLLNERINVLAVNTRSNKEDNTASMLLTIEIPGLDALGRLLARIAQLPNIIEARRNRAA
>NZ_AP014862.1|WP_004421308.1|4806255_4807086_-|nucleoside-triphosphate-pyrophosphohydrolase
MYQLNDLLHLMARLRDPQHGCPWDLKQDYASIVPHTIEEAYEVADAIERGDFDHLPGELGDLLFQVVYYSQLAKEEGRFEFAEVVDGITRKLLRRHPHVFPDGDLHGAPDMARLEEAAIKQRWEEIKAEERAEKAAAPEQLSLLDDVPSALPALSRAAKLQKRAAQVGFDWPEALPVVDKLREELDEVLEAMSENDPEAIAEEVGDLLFVAVNLARHLKVDPEAALRSANAKFDRRFRFIEQALRDAGRPIEDCALEELDALWGEAKKQEKAALGC
>NZ_AP014862.1|WP_004421311.1|4805695_4806235_-|DUF2058-domain-containing-protein
MSLSLRDQLLKAGLVNEKQAKQAAKQQQKQTRLEKKNQVEKDDSLRQAALQAQAEKAARDQELNRQQQEKVDQKARAAQIKQLIETSRLPKLTTEDYYNFVDEKKVKRLSVNAMMRDKLSRGSLAIVRHGGGYEVIPRDAALKIQERDPRRVVLLNTQVDEPDADDPYAAYKVPDDLMW
>NZ_AP014862.1|WP_004421315.1|4805361_4805637_+|Rho-specific-inhibitor-of-transcription-termination-(YaeO)
MTQDYQPLSCDLYDYIEIACLHHYQLHIELAGGARLDARAVTTLTTADKEEYLLVQNEGGQERLRLDRITAITPLTEGASFGRVLLGNQVC
>NZ_AP014862.1|WP_131679670.1|4804292_4805021_+|hypothetical-protein
MSSKKDGAQKGGAPGAGFSKTSAGGSSSSSNDFFKASASAASASSTSSASLGEAASNNISQADIKEQLERYAQQAFAKLALEVERMHAEKVVYIEQAQSRVSRNIEHSTNMLKTIQESLDTSTKMVEKSIEAREKLENEISSIKSNAVSALSIFVSFFAFITVSINVFSKAANVASASILVVVFWCLLIGFNILIAMRFKVNGGGRQYWLALLMVVLVSFLSVGLIHWLHPITVDRVIRILV
>NZ_AP014862.1|WP_036992228.1|4803625_4804288_+|hypothetical-protein
MFENMTLFSCQLALFVESGSVRADELSVEVRRGMDLGSYEPMLIPEAPGMPEEFPRLQINTSKGYQLTMSKLRIDFFMSLPLGLEDKELTEFHQRASQLLGILGSYGFSFSRVGLICNYFLSSTVSAKDAAQKFLKVDSDDVAELNFSITKRFERGGRLLNNLYNFASGASAHMGDGYVLVRDVNTVPHINYSMSPRDIEELIDFMKGMIDRNSVSDFVR
>NZ_AP014862.1|WP_036992229.1|4803258_4803534_+|hypothetical-protein
MIKARVIEILKSSEMRLPELEERTGISRYTWNNLKNPARSREIKETEILAIAEVFPQYRWWLLTGEVMPEIGQTSPAYDEAHSNLPASNAD
>NZ_AP014862.1|WP_004421296.1|4813111_4815868_+|response-regulator
MYKDLGIKGRVLMLTLLPTSLLALVLGGYFTWVQQADMQAQLLQRGQMIAEHLAPLAAPALTRGDAVLLERIADHALDQADVRAVSFIGADHRRLAHAGPRMLNESPAGEAGSLTLTSSTEATRFLQPVFERHRNLSAASTSLAEDHLLGWVELEMSHQGTLLRGYRSLLASLLLVAAGLGITALLALRMSRAINDPLRRIKQGVALLKEGRLETRLPPLGSHELDELASGINRMAEALQSAQEEMQHNIDQATEDVRQNLETIEIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLLKKSDLTPRQQDYLSTIEKSADNLLGIINEVLDFSKIEAGKLVLENIPFNLRDLVQDTLTILAPSAHEKRLELVSLVYRDTPLQLVGDPMRLKQVLTNLVSNAIKFTREGTIAVRAMLEDDSDDELAQLRISVQDTGIGLSDADVRALFQAFTQADNSLSRQAGGTGLGLVISKRLIEQMGGEIGVSSTPGVGSEFWISLSLPKSLDGSEDAFAPSLGRRLVAVLEPQELTRQALHHQLEDCGLEAADFSSLDALVEEVAARRQGKHPLGLAVIAADSRSLSPEDLARRVWELEELGCKTLVLCPTTEQALYHRVLPESHSQLQAKPVCTRKLQQALSVLVAPRQAAVEPSGPVVSRAPRLLCVDDNPANLLLVQTLLGDMGADVLAVDSGFAALEAVQRERFDLVLMDVQMPGMDGRQATEAIRRWESQQGLDPVPIVALTAHALANEKRALLQGGMDDYLTKPIGERQLAQVVLKWSGLTLGNQGAPRAIHGPHAERALQVLDPEEGLRLAAGKADLAADMLSMLLASLDADRQAIAQAARSGDRTALLERVHRLHGATRYCGVPQLRAACQLSETLIKQNDPEAQHALEELDAAIQRLADVAREEA
>NZ_AP014862.1|WP_004421294.1|4815929_4816916_+|2-hydroxyacid-dehydrogenase
MRTILFSSQAHDRDSFLGANPTVELHFQQARLTLDTTALANGFDVVCAFINDDLSAPVLERLANGGTRLVALRSAGYNHVDLAAAERLGLTVVRVPAYSPHAVAEHAVALILALNRRLHRAYNRTREGDFSLHGLTGFDLVGKTVGVVGTGQIGEAFARIMAGFGCGLLAHDPQRNPGVEALGALYVDLPDLLANSDILSLHCPLNDATRHLINADSLTRMKPGAMLINTGRGALVDTPALIEALKSGQLGYLGLDVYEEEANLFFEDRSDLPLQDDVLARLLTFPNVIVTAHQAFLTREALAAIARTTLDNITAWAAGQPCNQVQAQ
>NZ_AP014862.1|WP_004421293.1|4816947_4817388_+|hypothetical-protein
MAEHDFRYNLLNPAHTLNECRALSPGLYQVTGTGGSIQSGDTLLVTLKGSRDLSMRLTVDKVRHLINPPGQWLAVAKGPAFKELAIHNWKVDCDACGAHLDFEFAVDGGLGKAAQAPAAEARIAELGWRSQAGKHYCPNCRQEDTP
>NZ_AP014862.1|WP_004421292.1|4817384_4817792_+|META-domain-containing-protein
MNHSALPLIVLATALAGCASDRPRLETGTTYQVEWIGERPLIDRSHLTITLGDDNRAYGNAGCNHWFASYELKGDTLTFGAAGSTRKLCAPALMEQEQRFLEALDKVQRWDISPIDQLRLWPAEGKPIRLWPVEG
>NZ_AP014862.1|WP_004421291.1|4817798_4818854_-|DNA-polymerase-IV
MSQRKIVHIDCDCFYAAIEMRDDPSLAGKPLAVGGSPDKRGVVATCNYDARAYGVRSAMPMRTAVKLCPDLTIVRPRMDVYKGVSRQIHQIFRDFTEVIEPLSLDEAYLDVSDSPHFAGSATRIAQEIRRRVAAELLITVSAGVAPNKFLAKIASDWRKPDGLFVITPDQVDDFVAALPVSKLHGVGKVTAEKLARLGVRTCADLRDWNKLTLAREFGSFGERLYNLARGQDERSVQVDSRRQSISVENTYDRDLPDLPACLAQLPALLDELRGRMARLDASYKPDKPFVKLKFHDFTQTTLEQAGARRDLDSYRQLLSAAFARGDKPVRLIGVGVRLQDLRGVAEQLSLF
>NZ_AP014862.1|WP_131679669.1|4819211_4819880_+|hypothetical-protein
MTIVIVGVFTPGIMSPFWFSFHGLVSTREAEEATVTLMTPELTQIDFGWGRFYADQQRIQVSTSQSPWVRASDLISKMLSEVLPGTTCRAVGINVSMDYPVTAEQRESLGQKLAPRDAWGNWGKRLNNADPTKPSNGLTLITMRQGSDLENPYNKYVDVSVKSSNILKPYGISIYINDHYSYMDEPDSSVNSEIAAKTLASEFEKSLERSHSIAEEIMQGVE
>NZ_AP014862.1|WP_131679668.1|4819879_4820440_+|hypothetical-protein
MGATAALIFDSSAELNLPEHNQTARPFSAAANSPRIHASSYDYSALVDLNEPDNSLAKPQSPIEQPAQTRILHSFEFECSFVAEQEWEGCVTWFDDKQFHAHLLDLTNEGIEEEAVFDIGEISSIHHDLLKEGALFRWSIGYQRQKGGTRSKVSSLVFRRLPAWSARDIERSKKEADDLLADLQWD
>NZ_AP014862.1|WP_081608058.1|4820536_4821523_+|MBL-fold-metallo-hydrolase
MIVDSCQDEAGKPAALSYLEQIGVPPEQVSLVVVTHWHDDHVRGLSEIVQTCTNAVFCMSNVFSRSEFVAFLTAFNQTPPNDKFSSGSMELIRSLRLLSERKAIPRRAEPDRRLFCTKIADGDEIEIWSLSPSDACMERFMRYIASNMPQKGVTKTRAPSIHANETAVALLIKYGNHAVLLGADLEETHKGWTAILESGGRPQQKSTLFKVPHHGSQNGHHDGVWEKMLAPNPVSILTPYNRGSKLPTEADIARIAKRSERAFTTRHLRKTRKPSRSSLVEKMIKATATEIAPIDKSIGHIRATLNPHTDDWDIELHKGAAPLLDATA
>NZ_AP014862.1|WP_004421289.1|4821579_4822374_-|DNA-adenine-methylase
MTNPIVPWMGGKRRLADRLIPLFPPHECYVEVFAGGAALFFLRPMPAPTEVLNDINGDLVCLYRVVQNHLEEFVRQFKWALSSRQIFEWQKMTRPETLTDIQRAARFFYLQHHAFGGRVSGQTFGTATTGPAINLLRIEENLSAAWQRLSGVYVENLPWLDCAERYDRPHTFLYIDPPYWQTEGYGVDFPFENYERMADFMRRCKGRVMVSINDHPDIRRVFQGFHLERTDIRYSNTNQRQGQAEVTGELVITSWEPGRLGRLL
>NZ_AP014862.1|WP_036992225.1|4822661_4822877_+|hypothetical-protein
MSEVTIALAANTNASYEHASPTRKRSIAVAAALELIAARVTSAPANGTHLQAELNNLSTYADQIQSALEIK

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Crispr_ID: NZ_AP014862_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP014862_11

5363212-5363324

Orphan

Consensus_repeat	Method
CCGTGGTTGATGGGTTTCGCTTCGCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP014862_11

>merge|NZ_AP014862|11|5363212-5363324|CRISPRCasFinder
CCGTGGTTGATGGGTTTCGCTTCGCTCTACCGCATCCTACGAGAGGGATGAGCCCCGGATGGGCTGAGGGACGAAATCCATGCGGGCCGTGGTTGATGGGTTTCGCTGCGCTC

>NZ_AP014862|11|10|5363212-5363324|CRISPRCasFinder
CCGTGGTTGATGGGTTTCGCTTCGCTC	TACCGCATCCTACGAGAGGGATGAGCCCCGGATGGGCTGAGGGACGAAATCCATGCGGG
CCGTGGTTGATGGGTTTCGCTGCGCTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014862.1\|WP_036994480.1\|5354823_5355774_-\|RnfABCDGE-type-electron-transport-complex-subunit-D	unknown	unknown	gnl\|CDD\|376991
NZ_AP014862.1\|WP_167394940.1\|5362274_5363144_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226763
NZ_AP014862.1\|WP_003448613.1\|5377092_5377263_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014862.1\|WP_003448615.1\|5375999_5376473_+\|Bro-N-domain-containing-protein	unknown	unknown	gnl\|CDD\|214989
NZ_AP014862.1\|WP_096368074.1\|5370932_5372132_-\|sel1-repeat-family-protein	unknown	unknown	gnl\|CDD\|276807
NZ_AP014862.1\|WP_003457363.1\|5365666_5367142_+\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143469
NZ_AP014862.1\|WP_051050806.1\|5351851_5353315_+\|allantoin-permease	unknown	unknown	gnl\|CDD\|224374
NZ_AP014862.1\|WP_003457355.1\|5359195_5359552_+\|YkgJ-family-cysteine-cluster-protein	unknown	unknown	gnl\|CDD\|308985
NZ_AP014862.1\|WP_003457371.1\|5368232_5369801_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|366708
NZ_AP014862.1\|WP_003457354.1\|5357502_5358726_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340869
NZ_AP014862.1\|WP_003457358.1\|5361126_5362017_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|380403
NZ_AP014862.1\|WP_003448617.1\|5373491_5375342_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|197204
NZ_AP014862.1\|WP_036994481.1\|5355770_5357171_-\|electron-transport-complex-subunit-RsxC	unknown	unknown	gnl\|CDD\|235334
NZ_AP014862.1\|WP_003448614.1\|5376806_5377049_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014862.1\|WP_003457367.1\|5367537_5368221_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014862.1\|WP_096368063.1\|5372211_5373492_-\|sel1-repeat-family-protein	unknown	unknown	gnl\|CDD\|223861
NZ_AP014862.1\|WP_036994485.1\|5367191_5367527_+\|cytochrome-c	unknown	unknown	gnl\|CDD\|379187
NZ_AP014862.1\|WP_003457348.1\|5353311_5354430_+\|class-II-histone-deacetylase	unknown	unknown	gnl\|CDD\|212521
NZ_AP014862.1\|WP_003457344.1\|5349764_5351552_+\|choline-dehydrogenase	unknown	unknown	gnl\|CDD\|235000
NZ_AP014862.1\|WP_003457356.1\|5359744_5360932_-\|4-hydroxybenzoate-3-monooxygenase	unknown	unknown	gnl\|CDD\|236198

Protein	Function_ID	Function_description	E-value
NZ_AP014862.1\|WP_036994480.1\|5354823_5355774_-\|RnfABCDGE-type-electron-transport-complex-subunit-D	gnl\|CDD\|376991	pfam03116, NQR2_RnfD_RnfE, NQR2, RnfD, RnfE family. This family of bacterial proteins includes a sodium-translocating NADH-ubiquinone oxidoreductase (i.e. a respiration linked sodium pump). In Vibrio cholerae, it negatively regulates the expression of virulence factors through inhibiting (by an unknown mechanism) the transcription of the transcriptional activator ToxT. The family also includes proteins involved in nitrogen fixation, RnfD and RnfE. The similarity of these proteins to NADH-ubiquinone oxidoreductases was previously noted.	5.33958e-67
NZ_AP014862.1\|WP_167394940.1\|5362274_5363144_+\|hypothetical-protein	gnl\|CDD\|226763	COG4313, COG4313, Protein involved in meta-pathway of phenol degradation [Energy production and conversion].	6.33556e-76
NZ_AP014862.1\|WP_096368074.1\|5370932_5372132_-\|sel1-repeat-family-protein	gnl\|CDD\|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	1.25032e-06
NZ_AP014862.1\|WP_003457363.1\|5365666_5367142_+\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143469	cd07151, ALDH_HBenzADH, NADP+-dependent p-hydroxybenzaldehyde dehydrogenase-like. NADP+-dependent, p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid and other related sequences are included in this CD.	0
NZ_AP014862.1\|WP_051050806.1\|5351851_5353315_+\|allantoin-permease	gnl\|CDD\|224374	COG1457, CodB, Purine-cytosine permease and related proteins [Nucleotide transport and metabolism].	9.72256e-64
NZ_AP014862.1\|WP_003457355.1\|5359195_5359552_+\|YkgJ-family-cysteine-cluster-protein	gnl\|CDD\|308985	pfam03692, CxxCxxCC, Putative zinc- or iron-chelating domain. This family of proteins contains 8 conserved cysteines. It has in the past been annotated as being one of the complex of proteins of the flagellar Fli complex. However this was due to a mis-annotation of the original Salmonella LT2 Genbank entry of 'fliB'. With all its conserved cysteines it is possibly a domain that chelates iron or zinc ions.	0.000334296
NZ_AP014862.1\|WP_003457371.1\|5368232_5369801_+\|FAD-binding-oxidoreductase	gnl\|CDD\|366708	pfam01565, FAD_binding_4, FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidizes the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan.	8.28933e-29
NZ_AP014862.1\|WP_003457354.1\|5357502_5358726_-\|MFS-transporter	gnl\|CDD\|340869	cd06180, MFS_YjiJ, Uncharacterized protein YjiJ and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Escherichia coli YjiJ and other uncharacterized proteins. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.64073e-26
NZ_AP014862.1\|WP_003457358.1\|5361126_5362017_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|380403	cd06999, cupin_HpaA-like_N, AraC/XylS family transcriptional regulators similar to HpaA, N-terminal cupin domain. Members of this family contain an N-terminal cupin domain and a C-terminal AraC/XylS family helix-turn-helix (HTH) DNA-binding domain, similar to Escherichia coli 4-hydroxyphenylacetate catabolism regulatory protein HpaA (also known as 4HPA). HpaA is encoded by the hpaA gene which is located upstream of hpaBC. It is activated by 4-HPA, 3-HPA and phenylacetate, and represents a member of the AraC/XylS family of regulators that recognizes aromatic effectors. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	2.60273e-50
NZ_AP014862.1\|WP_003448617.1\|5373491_5375342_-\|hypothetical-protein	gnl\|CDD\|197204	cd09105, PLDc_vPLD1_2_like_2, Catalytic domain, repeat 2, of vertebrate phospholipases, PLD1 and PLD2, and similar proteins. Catalytic domain, repeat 2, of phospholipase D (PLD, EC 3.1.4.4) found in yeast, plants, and vertebrates, and their bacterial homologs. PLDs are involved in signal transduction, vesicle formation, protein transport, and mitosis by participating in phospholipid metabolism. They hydrolyze the terminal phosphodiester bond of phospholipids resulting in the formation of phosphatidic acid and alcohols. Phosphatidic acid is an essential compound involved in signal transduction. PLDs also catalyze the transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. Both prokaryotic and eukaryotic PLDs have two HKD motifs (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the phospholipase D (PLD) superfamily. PLDs are active as bi-lobed monomers. Each monomer contains two domains, each of which carries one copy of the HKD motif. Two HKD motifs from two domains form a single active site. PLDs utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group.	2.2135e-24
NZ_AP014862.1\|WP_036994481.1\|5355770_5357171_-\|electron-transport-complex-subunit-RsxC	gnl\|CDD\|235334	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional.	2.66988e-137
NZ_AP014862.1\|WP_003448615.1\|5375999_5376473_+\|Bro-N-domain-containing-protein	gnl\|CDD\|214989	smart01040, Bro-N, BRO family, N-terminal domain. This family includes the N-terminus of baculovirus BRO and ALI motif proteins. The function of BRO proteins is unknown. It has been suggested that BRO-A and BRO-C are DNA binding proteins that influence host DNA replication and/or transcription. This Pfam domain does not include the characteristic invariant alanine, leucine, isoleucine motif of the ALI proteins.	1.64415e-18
NZ_AP014862.1\|WP_096368063.1\|5372211_5373492_-\|sel1-repeat-family-protein	gnl\|CDD\|223861	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only].	1.93985e-06
NZ_AP014862.1\|WP_036994485.1\|5367191_5367527_+\|cytochrome-c	gnl\|CDD\|379187	pfam13442, Cytochrome_CBB3, Cytochrome C oxidase, cbb3-type, subunit III.	9.8533e-14
NZ_AP014862.1\|WP_003457348.1\|5353311_5354430_+\|class-II-histone-deacetylase	gnl\|CDD\|212521	cd09996, HDAC_classII_1, Histone deacetylases and histone-like deacetylases, classII. This subfamily includes bacterial as well as eukaryotic Class II histone deacetylase (HDAC) and related proteins. Deacetylases of class II are Zn-dependent enzymes that catalyze hydrolysis of N(6)-acetyl-lysine residues of histones (EC 3.5.1.98) and possibly other proteins to yield deacetylated histones/other proteins. Included in this family is a bacterial HDAC-like amidohydrolase (Bordetella/Alcaligenes species FB18817, denoted as FB188 HDAH) shown to be most similar in sequence and function to class II HDAC6 domain 3 or b (HDAC6b). FB188 HDAH is able to remove the acetyl moiety from acetylated histones, and can be inhibited by common HDAC inhibitors such as SAHA (suberoylanilide hydroxamic acid) as well as class II-specific but not class I specific inhibitors.	1.25899e-174
NZ_AP014862.1\|WP_003457344.1\|5349764_5351552_+\|choline-dehydrogenase	gnl\|CDD\|235000	PRK02106, PRK02106, choline dehydrogenase; Validated.	0
NZ_AP014862.1\|WP_003457356.1\|5359744_5360932_-\|4-hydroxybenzoate-3-monooxygenase	gnl\|CDD\|236198	PRK08243, PRK08243, 4-hydroxybenzoate 3-monooxygenase; Validated.	0

>NZ_AP014862.1|WP_167394940.1|5362274_5363144_+|hypothetical-protein
MLGTTASATEGGLSSWPMGIEIYGMGILPPPGTYGQVFVGNYLADSLRDDAGRKAADIDLRATTIVPRFVWVTEQQVLGGNLGFHALLPLNDIRLNVKNGPHDHKRGIGDAHLGPVIGFHHSEKLHSAVGIDFVLPTGSYDRDDLVNLGNNTYTVQAVYALTYTDPAGFNADVRLMHDYNFENRDTHYQSGRELHADYTLGWGLGNGWVVGVGGHAYQQISDDKCSASNCASAALVDANDGNRGRSFSIGPAVQYTGEGWFLSAKWQDESGVRNRAEGQTYWLKFTMPL
>NZ_AP014862.1|WP_003457358.1|5361126_5362017_+|helix-turn-helix-domain-containing-protein
MTTRIPGVPVFKLYGENQAWPTPDLLHCESIPKRSSLHHWEIKPHSHADLFQLLYVQRGQAVVEVEGRRSEITEPSIQVTPPLCVHGFQFSENIEGFVLTLGAPLVERLEERLGAPLAVLASSGCYPVGRDRRYINTLFAALLQEYEGSAASRDLVLDSLVNVLMVWITRRSQQNTPPSGRDERNRQLLGRFIKLVERHYREHLTVEAFAHRLDLSSVHLNTLCRRLAGQSALQIIHQRLLLEARRNLIYTNMTIAQVSDRLGFSDPTYFSRFFRRLSGQSPNAFRRENGQGKEER
>NZ_AP014862.1|WP_003457356.1|5359744_5360932_-|4-hydroxybenzoate-3-monooxygenase
MKTQVAIIGAGPSGLLLGQLLHKAGIDTLIVERQSPEYVLGRIRAGVLEQGTVDMLREAGVSERMDAEGLVHHGVELVFDGKRVPVHLTELTGGKSVMVYGQTEVTRDLMDARAASGAPIVYSASNVELHELKGERPYVTFEKDGERVRVDCDYIAGCDGFHGVSRKSIPEGVLTEYERVYPFGWLGLLSDTPPVHEELIYAHHERGFSLCSQRSLTRSRYYLQVPLTDKVEDWSDERFWNELKARLPEDVADKLVTGPSLEKSIAPLRSFVVEPMQYGHLFLVGDAAHIVPPTGAKGLNLAASDVCYLYRILVKVYREGRTDLLEKYSELALRRVWKGERFSWFMTNLLHDFDGHKDAWDQKMQQADREYFLGSHAGLVNIAENYVGLPYEDVE
>NZ_AP014862.1|WP_003457355.1|5359195_5359552_+|YkgJ-family-cysteine-cluster-protein
MSCTNFRKIDQLRRQIPSFACVPGCHDCCGPVTASSEELSRLPVKSDAEHDAALAHWNCVHLGEHGCEAYDQRPLICRLFGTTPSLPCPHGRGPETPTEAHVERQVHQLIASTRQVLV
>NZ_AP014862.1|WP_003457354.1|5357502_5358726_-|MFS-transporter
MRLNVAVVVLLTGLVAATYGFGIYLFAQLVPDMQASLGFGFSYVGTITASAQLGFLLCAMLAVWLTPKVGGGRMIAASGAVCALALLLIPLSSNTFVIGVLLTLLAGTAATVFVPMVDVIARVVAYRYRGLAMGLVSSGTSYGVAINSLLVPIYAPQGEWRSVWWVVGLLTLAMAVLVLVVLKRGGLLGQTLPSAPTATTDEAASSSGRPGLIRPWVLLIWSMNFLIGFATFPFQTYLSSYLRTELGFDVQYTAQVWAVIGFVGMFAGLAVGWLSDRTGLRFAMYLVYGCVVTAALIFVVQPSGHWPLVAAVLFSTAFYPIFGLIPAYVSKLASSSAMAVSIFGIANVMQGSGGMLGNYGAGLLANHSGSFAGVYAVISGVGVLLIVLTLRLPSEAPAAASKGLAVG
>NZ_AP014862.1|WP_036994481.1|5355770_5357171_-|electron-transport-complex-subunit-RsxC
MSSQSLQSIERLPRLVQAQRQPQQKTFWRRLFAIASPSGRSWHGGLKLRGYKELSNADPIAPVAVGQLQLAIPLERGRRCAQPCVQPGQPVRKGEVIGIGDHDTPWVHASTSGVVERVGLAYAADSAEPVMAVILNADGRDEWIERTVTEVPQTPEALVERALRMGIVGLGGAGFPTALKLADARHPDLLLINGAECEPFLTCDDRLMRERAEALIESADYLASLMGITLTRFGVETNKPEAMAALRAASRQARTRVEICPLPARYPAGGQPLMIKSLSGRNLAPGTRPAEIGVLALNVATLHALGRAAFHGEPLISRVLTLTGGCERPGNVEVPVGYPVSALRALAGADSEGRLTQVGGPMMGQPLPDPAAVISKTSSCLIFAAERYLPAAQPAGSCIRCTRCVDVCPMSLRPLDLYAAAERQDKADLQALRLDACIECGSCSSTCPSHLPLRERFRQSKTELRP
>NZ_AP014862.1|WP_036994480.1|5354823_5355774_-|RnfABCDGE-type-electron-transport-complex-subunit-D
MSLILRPAPHRLRTVMLLVSLCLLPGTVLYAWQFGVVVWLQTFWCVLLAFGFEAGLLRLRGLDVRAGLSDLSWLVLGLILARALPLLVPLWMMALASFAALALCKHGSGGLGRNRLNPAMVGLGIIAICFYQQLYPAPSNHAPWTHGLGAREVLLQQLQLAPPLALDAFAGATQLSRDQLTPITPNLSGYGYVAGGLILAVLRVIRIEIPLAMLASTALLCLAAGHSPQESLYSLSLGGLLFTAFFIATDPVTSPDTRTGRILFGVAIGVLTELIREFGLYADGLCFAVLAANLLVPQIDQLVRRLQRPWYAASRS
>NZ_AP014862.1|WP_003457348.1|5353311_5354430_+|class-II-histone-deacetylase
MNTKTTGWIWDERFITHDTRAWSLPWQEPIDHPEKGDTKRRFASLVKRSGLEQHLVPLPFSPASEADLLRVHTPEYVDRILNPTGPAWSDAGDGETPVGPGSADVARLAAGAVISTFGAVVSGTVTNAYALVRPPGHHAIAGQGMGYCIFHNTAIGIRHLQQTGAVSRVAVIDWDVHHGNGTETLFYDDPSVLTISLHQDDLYPIGRGKVQDVGTGPGVGANLNIPLPAGSGRGAYVAAFERVVVPAIRRFRPDLIVIASGFDSAAMDPFGRQLLHSEAYRELTTLVMDLADEVCKSRVAAVHEGGYDPLMGPFCGLAVVETLAGRRTAVEDPWIGTVLNLPEQALLPHHDAAIRACEQLVAGVPDGSGKAR
>NZ_AP014862.1|WP_051050806.1|5351851_5353315_+|allantoin-permease
MGMTSNGQSASVSPAIAQGRSDGAERRSVDFVPVTERHGTVRHLGAVWIVANINLTAMATGATTLALGGSLFWTLVATVFGSLFGTLFMALHSSQGPHLGLPQLVQSRAQFGFLGAAITVWVFALVNYFNYNVADAILAGSSLNFLLGIPISWGFPIAVVFAGTLALYGYRWIHRVNRFLVVPLGLTIVILTYAAVARGGVSADAFAPGPIEWHAFATTFVIVAGFQLGWAPYVSDYSRYLAPTVSTRASFLWTYLPSAISALWVIGLGSLLAAAAPGATVITAIAQGGDALFAGGGRIAVALLFIGLLVVMALNAYGGSLTLISILDCFRRVRPSLAMRAITIMVMTLSVWIVAAMVGEERFNLFYGNVLVFLAYLFTPWTAINLVDFYLVRKGCYSIRELFNPAGIYGRWGWQGNVAYIGALAAMVPFFVTAPYTGWIARQIGDIDISMFVGLLVASALYLLTSRTLDLGAERSLVEKERKVSES
>NZ_AP014862.1|WP_003457344.1|5349764_5351552_+|choline-dehydrogenase
MSTLEQTSLSSPQDEGHYDYIIVGAGAAGCVLANRLGEDPDVRILVIEAGGSDASVIVAMPAALSIPMNTRRFNWGMKTEPEPGLGGRQVNLPRGKGLGGSSSINGMCWVRGNPMDYELWEALGADGWRWSNVLPYFLRMENVEGGGPLRGTKGPMRIKRGPETNPLYRAFVKAGSEAGYAVSDNMNSRQHEGFGPMEMNVGDGRRMSAARAYLRPAMARGNVRVIKGGLVDRVIFDGRRATGVLFSVAGKPARAMATREVILSAGAIMSPVILKRSGIGPAQELAQHGIPVICDAPEVGENLMDHMELYLQMECTQPVSLFPTQSLLGKARIGLEWLATRRGLGATNHFESGGHIRSRAGIVYPDIQFHFLPLAISYDGQTLAEGHGFQVHVGTKRSKSRGWVRLRDARPESLPRVRFNYMTHADDWTEFRACVRLTREIFAQPAFAPYRGRELAPGAAVQDDAAIDAFLKQKLESAYHPCGTCRMGSDEAAVTFPDGRVRGVEALRVVDASLMPAATAGDLQAPTLVLAERLSDLIRGRHLPEAQGAQLLADPQWATRQRGQNITRDYASERHRLAAALLANVKGAPLPMAAG
>NZ_AP014862.1|WP_003457363.1|5365666_5367142_+|aldehyde-dehydrogenase-family-protein
MNSIRPAYQNLDLQPLAGQWRAGSTGRPLEVVDPFTEAPLLRIALASREDLDEAYRKARDSQREWAAKAPAERARVLLEAVKIFDERREEIIDWIIRESGSTRIKAQIEWGAARAITLESASLPNRVHGRIIGSNIPGKESRVYRVPLGVIGVISPWNFPLHLTARSLAPALALGNAVVVKPASDTPVTGGLLLARIFEEAGLPAGVLSVVVGSGAEIGDAFVEHPIPAFISFTGSTQVGRGIGRIASGGEHLKHVALELGGNSPFVVLADADVEQAVNAAVVGKFLHQGQICMAVNRIIVEAPLLEAFTRRFVERVKALPYGDPSRPETVVGPVINARQLAGLKEKVATALAEGATLLAGGEAQGNVLPPHVFGNVTADMEIAREEIFGPLVGIQSARDAEHALELANQSEYGLSSAVFTGSLERGVQFARRIHAGMTHVNDIPVNDEPNAPFGGEKNSGLGRFNGDWAIEEFTTDHWITLQHSPRPYPF
>NZ_AP014862.1|WP_036994485.1|5367191_5367527_+|cytochrome-c
MPSLLNSRAVKSRLAACLALPLALLAGQAFADGDGVWKSGENVYQKVCGHCHETNIGPNLKGRQLPPQYSIAVVRNGFRAMPAFPASFIDDKALGQVADYIAKSAAPAAKP
>NZ_AP014862.1|WP_003457367.1|5367537_5368221_+|hypothetical-protein
MNIERRSLLKGLALGGIAGAAMGASSLSLGKAILGGRAQALPTLVLVKGDAGAAFLEGVRHSPMARHADALHSDLGLDFILALQRRLDSGQPQRIIGLVDDASAALVLDLARSSGARIHWLGQHSVGAAGSRHQVLSAERAHACALQLGRQLQACGGGFDLTAQRQQGQRSLNLAAAPRGGDASAQWAATLGHSLAGLGGTDIAPAPRIAQRHPALAGHFVSFSIEA
>NZ_AP014862.1|WP_003457371.1|5368232_5369801_+|FAD-binding-oxidoreductase
MTEQTPSTLLPRGVDHANFQQALAKFRALLGEDNVLVRDDQLIPYNKIMMAVDNAEHAPSAAVTATSVEQVQGVVKICNEHGIPVWTISTGRNFGYGSAAPGQRGQVILDLKKMNRILHVDPELCTALVEPGVTYGQLYDYIQENNLPLMLSFSAPSAIAGPLGNTMDRGVGYTPYGEHFLMQCGMEVVLANGDIYRTGMGGVKGDNAWQVFKWGYGPTLDGMFTQANYGICTKMGFWLMPKPPVFKPFEIKFENESDIAEIVEFIRPLRIAQVIPNSVVIAGVLWEASTCNTRRSDYTTEPGATPDAILKQIQKDKNLGAWNVYAALYGTQEQVDVNWKIVTGALKQLGKGKIVTQEEAGDTQPFKYRAQLMSGVPNLQEFGLYNWRGGGGSMWFAPVSQARGSECEKQQALAKKVLNKHGLDYVGEFIVGWRDMHHVIDVLYDRTNPEETQRANACFAELLDVFEQHGYAVYRVNTAFQERVAQSYGTVKRKVEHAIKRALDPNNILAPGKSGIDLANTF
>NZ_AP014862.1|WP_096368074.1|5370932_5372132_-|sel1-repeat-family-protein
MDPLSQIRPNLAFTCRHERIPEASADSDQLFKYARWLQKNNQLKQDPTVDVEVERLYRIATEHQHYKASINLINGAFRGHFTLRSEEFLRLSQELIDAEVASGYYFIAILLQQGAAGLREDPEMALRYYRKAADEGSALAQALVADKLAPSDIAPDIARQMRRCAAEQGHGDAASDLGVNLVGIRRYQEALEAFQLGVAAGDESSASFLEEGFRGPLPTDTLYYLNQEKDLERAERYKTIWRILARASYASPKVPEINEIVPLPPAELPPWDGKLQWLEERKANIPPPKPSEALIHQLARDKHLDPATGRPTPESPHFVYLDSPPICVSGEPCPRAGYWEAMDVNFFWITVKDKARRRFREGEILPTLTLERRTARLWPLPAKVTEGPERVRWRMLGEA
>NZ_AP014862.1|WP_096368063.1|5372211_5373492_-|sel1-repeat-family-protein
MRTLLLLMTLLLAACGGHGLKLKKDTAVDPLSQIRANLAFTCRHERIPEASADSDLLFKYARWQQKHNQLKEDPAVDAEVERLYRIAAEHQHYKASINLINGAFRGHFKVRGEERLRLSQELMDAGVASGYYFVGLFLQRGSAGLRENPEMALRYYRKAADEGSALAQALVADKLAPIRFAPDIARQMRRCAAEQGHGDAATDLGVDLAGDGHYQEAVEAFQLGVAAGDETSAGFLDEGFRGPTPTNTLHYLGQEKDLERAERYKAIWSILADYSYASPKVPEINDILPLPPAELPPWDGKLQWLEERKANIPPPKPSEALIHQLARDKHLDPATGRPTPESPHFVYLDSPPICVSGEPCPRAGYWEAMDVNFFWITVKDKARRRFREGEILPTLTLERRTARLWPLPPKVTEGPERVRWRMLGEV
>NZ_AP014862.1|WP_003448617.1|5373491_5375342_-|hypothetical-protein
MRPANARHPEIVVPIALQHTHEAVCSTPWFVCDTEYRPWPASYKPLINGEEAFRAVHQAIAEAQRSVDIICWGFQPSMHFIRDGSDDRCIGVLLEEKARQGVRVRILGWEMPLNAAGMAGEANLPGKGGLADRAGQTSSDEQYAYDRQWFKQYAVADDKAADLADAHIPLFVSRDFSLSERTEIAHQLKLRRLDPELAKRSAFVMRHTVTHHQKSVLVDFELPERAIGFVMGHNMLDEYWDTDHHSALWRPDPKRPDAKTHAPNRGPRGALPRQDISCQITGRILRDLHHNFATAWAKETGEDLLRSRNAYEVAVQLQPRTECGTALMAQLLRTQAQERGGIRDIQAGYLKAINNATQFIYIENQYFRWPPLAEAILEAAKVQTNNGRDPGIHGALHLFVVTNVTDEGIGKGTVNTQRMLESLGRADTIPKVTKELRIKRAERDMPPKPRPDGANDWHGKQELAKWQKELDEQIKEIEDEDLIPETRPGLKVHVCSLVAPDSPAGKPWVPVYIHSKLMIVDDVLTTHGSANINTRSMQVDSELNILHEWHEVTQAMRRRLWNLHTAGQGVQDNPKDAFKAWEELIKKNKERQSKDLPPDTPVVEFLYDKTTLSNLD
>NZ_AP014862.1|WP_003448615.1|5375999_5376473_+|Bro-N-domain-containing-protein
MTDYLTPTRFLRFRLSLRALLIDDRPWFVARDLAKLASIRTDTDFTRKLDEDQWRDEVIRLEDGGFRLERLVNESGLHQLLLVHYYHPEHRGLRRWISDEVVPALSREGTAGQQPRRRLLRWQGQPLTLMEWQGTLWIRYEDMPRLQGQVPERETLR
>NZ_AP014862.1|WP_003448614.1|5376806_5377049_+|hypothetical-protein
MKREFPEHIAWSEARMNGDHALAFVAVQPRNPRKEARFHLVYDGTSFAQLSEATHAAERALQGILRFDGFDAPVFNSPEC
>NZ_AP014862.1|WP_003448613.1|5377092_5377263_-|hypothetical-protein
MSDFETNRARSQLDEQTRAFLEKGGAITKVPTGKSGWDPDRKKSQWSKAQPKPPAS

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_AP014862_8	8.1\|4430908\|17\|NZ_AP014862\|PILER-CR	4430908-4430924	17	NZ_AP014862.1	4750095-4750111	0	1.0
NZ_AP014862_8	8.1\|4430908\|17\|NZ_AP014862\|PILER-CR	4430908-4430924	17	NZ_AP014862.1	4750170-4750186	0	1.0
NZ_AP014862_8	8.1\|4430908\|17\|NZ_AP014862\|PILER-CR	4430908-4430924	17	NZ_AP014862.1	4990674-4990690	1	0.941
NZ_AP014862_8	8.2\|4430983\|17\|NZ_AP014862\|PILER-CR	4430983-4430999	17	NZ_AP014862.1	4750095-4750111	1	0.941
NZ_AP014862_8	8.2\|4430983\|17\|NZ_AP014862\|PILER-CR	4430983-4430999	17	NZ_AP014862.1	4750170-4750186	1	0.941

1. spacer 8.1|4430908|17|NZ_AP014862|PILER-CR matches to position: 4750095-4750111, mismatch: 0, identity: 1.0

accccgccgtaggagcg	CRISPR spacer
accccgccgtaggagcg	Protospacer
*****************

2. spacer 8.1|4430908|17|NZ_AP014862|PILER-CR matches to position: 4750170-4750186, mismatch: 0, identity: 1.0

accccgccgtaggagcg	CRISPR spacer
accccgccgtaggagcg	Protospacer
*****************

3. spacer 8.1|4430908|17|NZ_AP014862|PILER-CR matches to position: 4990674-4990690, mismatch: 1, identity: 0.941

accccgccgtaggagcg	CRISPR spacer
accccgccgaaggagcg	Protospacer
********* *******

4. spacer 8.2|4430983|17|NZ_AP014862|PILER-CR matches to position: 4750095-4750111, mismatch: 1, identity: 0.941

accccgtcgtaggagcg	CRISPR spacer
accccgccgtaggagcg	Protospacer
******.**********

5. spacer 8.2|4430983|17|NZ_AP014862|PILER-CR matches to position: 4750170-4750186, mismatch: 1, identity: 0.941

accccgtcgtaggagcg	CRISPR spacer
accccgccgtaggagcg	Protospacer
******.**********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2889617 : 2946373

uncultured_Caudovirales_phage(45.65%)

plate,tRNA,tail,terminase,protease,portal,capsid,head,holin

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004421874.1\|2889617_2890736_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_004421871.1\|2890806_2891250_-	NUDIX hydrolase	NA	NA	NA	NA
WP_004421869.1\|2891344_2893573_-	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA
WP_004421866.1\|2893930_2895187_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	8.3e-18	83.3
WP_004421865.1\|2895253_2895517_-	cold shock domain-containing protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	3.0e-15	58.2
WP_036993043.1\|2895747_2896110_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.8e-10	40.7
WP_004421863.1\|2896138_2898409_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	3.3e-166	43.0
WP_002553999.1\|2898463_2898682_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_036993006.1\|2898784_2899492_-	arginyltransferase	NA	NA	NA	NA
WP_004421861.1\|2899546_2900227_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_004421860.1\|2900266_2901217_-	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	1.7e-63	44.3
WP_004421858.1\|2901482_2903891_+	DNA translocase FtsK	G1D482	Mycobacterium_virus	4.2e-87	51.1
WP_004421857.1\|2903924_2904551_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_004421856.1\|2904562_2905888_+	replication-associated recombination protein A	G3MBE0	Bacillus_virus	5.7e-70	37.0
WP_004421855.1\|2905884_2906259_+	fluoride efflux transporter CrcB	A0A2H4J148	uncultured_Caudovirales_phage	2.1e-09	44.0
WP_004421854.1\|2906275_2907556_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	9.7e-99	45.0
WP_004421853.1\|2907681_2909076_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_036993004.1\|2909155_2910139_-	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	1.3e-148	78.8
WP_004421851.1\|2910135_2910471_-	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	4.9e-42	74.8
WP_004421850.1\|2910467_2910770_-	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	3.4e-26	62.0
WP_004421849.1\|2910769_2911126_-	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.3e-32	61.0
WP_004421848.1\|2911127_2911520_-	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	7.4e-50	75.2
WP_004421847.1\|2911637_2912306_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	2.4e-96	84.8
WP_004421846.1\|2912680_2913847_-	DUF3596 domain-containing protein	A0A2H4JGM5	uncultured_Caudovirales_phage	2.1e-153	66.3
WP_036993001.1\|2913919_2914171_-	hypothetical protein	NA	NA	NA	NA
WP_004421845.1\|2914190_2917001_-	hypothetical protein	A0A2H4J936	uncultured_Caudovirales_phage	0.0e+00	67.5
WP_004421844.1\|2917000_2917240_-	hypothetical protein	NA	NA	NA	NA
WP_004421843.1\|2917303_2917666_-	hypothetical protein	NA	NA	NA	NA
WP_004421841.1\|2917668_2917956_-	ogr/Delta-like zinc finger family protein	Q9ZXJ1	Pseudomonas_virus	2.5e-15	49.5
WP_004421839.1\|2917960_2918233_-	hypothetical protein	NA	NA	NA	NA
WP_004421837.1\|2918266_2918449_-	hypothetical protein	A0A077KET0	Ralstonia_phage	3.6e-07	56.1
WP_036992998.1\|2918477_2918666_-	hypothetical protein	E5E3U0	Burkholderia_phage	9.1e-14	69.2
WP_004421833.1\|2918678_2918906_-	DNA-binding protein	A0A2H4JE67	uncultured_Caudovirales_phage	3.7e-09	50.7
WP_036992993.1\|2918970_2919336_+	helix-turn-helix transcriptional regulator	A0A2H4JFL3	uncultured_Caudovirales_phage	1.2e-25	55.3
WP_036992983.1\|2919535_2920057_+	hypothetical protein	NA	NA	NA	NA
WP_004421831.1\|2920153_2921305_-	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA
WP_004421828.1\|2921509_2922739_+	hypothetical protein	NA	NA	NA	NA
WP_004421826.1\|2922853_2923330_-	transcriptional regulator	NA	NA	NA	NA
WP_004421822.1\|2923326_2923653_-	hypothetical protein	NA	NA	NA	NA
WP_004421820.1\|2923703_2924702_-	phage late control D family protein	Q9ZXJ8	Pseudomonas_virus	1.1e-113	63.3
WP_004421818.1\|2924698_2925130_-\|tail	phage tail protein	A0A2H4JG54	uncultured_Caudovirales_phage	1.5e-56	73.0
WP_004421815.1\|2925135_2927817_-	hypothetical protein	A4PE52	Ralstonia_virus	3.0e-190	46.9
WP_004421814.1\|2927806_2927926_-\|tail	GpE family phage tail protein	Q9ZXK1	Pseudomonas_virus	6.5e-10	74.4
WP_004421811.1\|2927934_2928243_-\|tail	phage tail assembly protein	Q9ZXK2	Pseudomonas_virus	2.5e-29	72.6
WP_004421809.1\|2928330_2928486_-	hypothetical protein	NA	NA	NA	NA
WP_004421808.1\|2928555_2929071_-\|tail	phage major tail tube protein	A0A2H4J916	uncultured_Caudovirales_phage	7.9e-76	78.9
WP_004421806.1\|2929158_2930328_-\|tail	phage tail sheath protein	A0A2H4JCP8	uncultured_Caudovirales_phage	1.5e-167	72.9
WP_004421804.1\|2930415_2931147_-	hypothetical protein	NA	NA	NA	NA
WP_004421802.1\|2931154_2932735_-\|tail	phage tail protein	A0A077K818	Ralstonia_phage	3.6e-26	44.9
WP_004421800.1\|2932734_2933298_-\|tail	phage tail protein I	A0A077KER5	Ralstonia_phage	2.1e-21	57.3
WP_004421799.1\|2933290_2934211_-\|plate	baseplate assembly protein J	S4TNY7	Salmonella_phage	5.4e-75	49.0
WP_004421798.1\|2934207_2934552_-	GPW/gp25	A0A2H4JE52	uncultured_Caudovirales_phage	8.0e-32	58.4
WP_004421795.1\|2934548_2935115_-\|plate	phage baseplate assembly protein V	A0A2H4JFJ8	uncultured_Caudovirales_phage	1.2e-40	48.9
WP_131679680.1\|2935297_2935816_-	hypothetical protein	NA	NA	NA	NA
WP_004421794.1\|2936232_2937054_-	phage antirepressor N-terminal domain-containing protein	A0A1I9LJR6	Stx_converting_phage	1.1e-34	52.0
WP_004421792.1\|2937125_2937443_-	DUF1484 family protein	NA	NA	NA	NA
WP_004421790.1\|2937830_2938286_-	phage virion morphogenesis protein	A0A2H4J927	uncultured_Caudovirales_phage	1.7e-50	71.7
WP_004421788.1\|2938275_2938806_-\|tail	phage tail protein	A0A2H4J906	uncultured_Caudovirales_phage	1.1e-48	64.6
WP_004421787.1\|2938802_2939009_-	hypothetical protein	NA	NA	NA	NA
WP_004421785.1\|2939005_2939809_-	DUF3380 domain-containing protein	Q9ZXL6	Pseudomonas_virus	1.3e-93	66.8
WP_004421783.1\|2939805_2940120_-\|holin	phage holin, lambda family	A0A2H4JFM8	uncultured_Caudovirales_phage	1.7e-20	53.7
WP_004421781.1\|2940136_2940343_-\|tail	phage-related tail protein	Q9ZXL9	Pseudomonas_virus	4.5e-14	56.5
WP_004421779.1\|2940342_2940804_-\|head	head completion/stabilization protein	Q9ZXM1	Pseudomonas_virus	2.8e-32	49.0
WP_004421777.1\|2940904_2941603_-\|terminase	terminase endonuclease subunit	Q9ZXM2	Pseudomonas_virus	2.0e-85	71.6
WP_004421775.1\|2941605_2942616_-\|capsid	phage major capsid protein, P2 family	A0A077KEQ8	Ralstonia_phage	1.7e-122	63.9
WP_004421774.1\|2942640_2943480_-\|capsid	GPO family capsid scaffolding protein	A0A2H4J928	uncultured_Caudovirales_phage	1.3e-62	49.5
WP_004421772.1\|2943623_2945384_+\|terminase	terminase ATPase subunit family protein	Q9ZXM5	Pseudomonas_virus	1.8e-289	85.3
WP_004421769.1\|2945383_2946373_+\|portal	phage portal protein	A0A2H4J922	uncultured_Caudovirales_phage	8.2e-154	80.8

DBSCAN-SWA_2

3770804 : 3777957

Pseudomonas_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096368068.1\|3770804_3771158_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	3.5e-14	37.3
WP_003449169.1\|3771177_3772704_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	2.2e-89	38.9
WP_081608134.1\|3772805_3773114_+	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_100244219.1\|3773163_3773355_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_003456303.1\|3773351_3773642_+	AlpA family transcriptional regulator	G8DCP6	Silicibacter_phage	7.0e-05	37.9
WP_003456304.1\|3773638_3773887_+	hypothetical protein	NA	NA	NA	NA
WP_003456305.1\|3774392_3774572_+	hypothetical protein	A0A1B0VP73	Pseudomonas_phage	1.1e-05	64.4
WP_003456306.1\|3774643_3774895_+	hypothetical protein	NA	NA	NA	NA
WP_003456308.1\|3774887_3775163_+	hypothetical protein	NA	NA	NA	NA
WP_003456310.1\|3775159_3776167_+	DNA primase, phage-associated	A0A1B0VML8	Pseudomonas_phage	1.6e-48	59.3
WP_003456314.1\|3776163_3777957_+	DUF927 domain-containing protein	A0A1B0VP75	Pseudomonas_phage	2.4e-188	58.9

DBSCAN-SWA_3

4143167 : 4158771

Paenibacillus_phage(66.67%)

integrase,transposase

attL 4149375:4149434|attR 4157394:4158308

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003454599.1\|4143167_4144079_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_003454597.1\|4145295_4146285_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_003454594.1\|4146465_4147455_+	DNA-binding protein	NA	NA	NA	NA
WP_131679694.1\|4147602_4148577_-	hypothetical protein	NA	NA	NA	NA
WP_085986648.1\|4149373_4150227_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	1.5e-23	47.5
4149375:4149434	attL	NA	NA	NA	NA
WP_003451024.1\|4150445_4152380_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_081608068.1\|4152354_4153293_+	AAA family ATPase	NA	NA	NA	NA
WP_003451022.1\|4153289_4155635_+	hypothetical protein	NA	NA	NA	NA
WP_085986648.1\|4156600_4157453_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	1.5e-23	47.5
WP_096368047.1\|4157501_4158017_+	phage antirepressor	G1JX52	Mycobacterium_phage	3.2e-08	33.0
WP_003450288.1\|4158237_4158771_+\|transposase	transposase	NA	NA	NA	NA
4157394:4158308	attR	NA	NA	NA	NA

DBSCAN-SWA_4

4792793 : 4864255

Pseudomonas_phage(39.53%)

integrase,terminase,transposase,protease,portal,capsid,head

attL 4818636:4818653|attR 4872298:4872315

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003450664.1\|4792793_4793738_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_003450663.1\|4793875_4794580_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA
WP_003450662.1\|4794576_4795671_-	AI-2E family transporter	NA	NA	NA	NA
WP_003450660.1\|4795713_4796751_-	DUF2066 domain-containing protein	NA	NA	NA	NA
WP_003450658.1\|4796994_4798053_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	2.5e-76	47.0
WP_003450657.1\|4798052_4798703_+	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	7.8e-28	38.0
WP_003450656.1\|4798714_4799431_+	DUF3108 domain-containing protein	NA	NA	NA	NA
WP_096368056.1\|4799508_4800546_-\|integrase	tyrosine-type recombinase/integrase	Q56VN7	Pseudomonas_phage	1.5e-86	48.8
WP_096368057.1\|4800545_4801829_-	hypothetical protein	Q56VN8	Pseudomonas_phage	1.9e-126	52.0
WP_003450473.1\|4802294_4802678_-	hypothetical protein	NA	NA	NA	NA
WP_003450476.1\|4802670_4802919_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_003456723.1\|4802915_4803131_-	hypothetical protein	NA	NA	NA	NA
WP_036992229.1\|4803258_4803534_+	hypothetical protein	NA	NA	NA	NA
WP_036992228.1\|4803625_4804288_+	hypothetical protein	NA	NA	NA	NA
WP_131679670.1\|4804292_4805021_+	hypothetical protein	NA	NA	NA	NA
WP_004421315.1\|4805361_4805637_+	Rho-specific inhibitor of transcription termination (YaeO)	NA	NA	NA	NA
WP_004421311.1\|4805695_4806235_-	DUF2058 domain-containing protein	NA	NA	NA	NA
WP_004421308.1\|4806255_4807086_-	nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA
WP_004421306.1\|4807178_4809425_-	GTP diphosphokinase	NA	NA	NA	NA
WP_036992227.1\|4809509_4810862_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	F5CA72	Streptococcus_phi-m46.1-like_phage	5.0e-37	29.9
WP_004421300.1\|4810848_4811760_-	cysteine synthase CysM	A0A1X9I5K7	Streptococcus_phage	3.2e-56	41.7
WP_004421298.1\|4811963_4812764_+	sel1 repeat family protein	NA	NA	NA	NA
WP_004421296.1\|4813111_4815868_+	response regulator	A0A1V0SGX0	Hokovirus	4.4e-48	28.4
WP_004421294.1\|4815929_4816916_+	2-hydroxyacid dehydrogenase	Q89388	Paramecium_bursaria_Chlorella_virus	3.1e-68	44.9
WP_004421293.1\|4816947_4817388_+	hypothetical protein	NA	NA	NA	NA
WP_004421292.1\|4817384_4817792_+	META domain-containing protein	NA	NA	NA	NA
WP_004421291.1\|4817798_4818854_-	DNA polymerase IV	NA	NA	NA	NA
4818636:4818653	attL	NA	NA	NA	NA
WP_131679669.1\|4819211_4819880_+	hypothetical protein	NA	NA	NA	NA
WP_131679668.1\|4819879_4820440_+	hypothetical protein	NA	NA	NA	NA
WP_081608058.1\|4820536_4821523_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_004421289.1\|4821579_4822374_-	DNA adenine methylase	Q5ZQW7	Pseudomonas_phage	6.4e-101	67.3
WP_036992225.1\|4822661_4822877_+	hypothetical protein	A0A0S2SYV3	Pseudomonas_phage	3.0e-05	51.8
WP_036992224.1\|4822941_4823331_+	hypothetical protein	A0A0S2SYH9	Pseudomonas_phage	1.3e-25	47.6
WP_004421287.1\|4823347_4823857_-	DUF2514 family protein	NA	NA	NA	NA
WP_004421286.1\|4823853_4824372_-	hypothetical protein	A0A0A0YRL5	Pseudomonas_phage	8.9e-27	43.4
WP_004421284.1\|4824428_4824785_-	hypothetical protein	NA	NA	NA	NA
WP_004421282.1\|4824788_4826744_-	hypothetical protein	A0A2R2YB20	Pseudomonas_phage	2.0e-10	53.2
WP_004421279.1\|4826748_4827315_-	hypothetical protein	A0A0U4JIY3	Pseudomonas_phage	1.3e-79	79.8
WP_004421277.1\|4827342_4827540_-	hypothetical protein	NA	NA	NA	NA
WP_004421275.1\|4827536_4828124_-	hypothetical protein	A0A1W6JT86	Pseudomonas_phage	7.0e-52	55.8
WP_004421273.1\|4828160_4828847_-	hypothetical protein	NA	NA	NA	NA
WP_004421271.1\|4828856_4830518_-	hypothetical protein	NA	NA	NA	NA
WP_004421269.1\|4830514_4830901_-	hypothetical protein	NA	NA	NA	NA
WP_004421267.1\|4830902_4832669_-	hypothetical protein	A0A0U4JP39	Pseudomonas_phage	4.0e-111	42.0
WP_036992223.1\|4832668_4833175_-	hypothetical protein	A0A1W6JT98	Pseudomonas_phage	1.4e-40	52.7
WP_004421263.1\|4833167_4835978_-	tape measure protein	A0A1B0YZV6	Pseudomonas_phage	2.3e-137	41.1
WP_004421262.1\|4836080_4836380_-	hypothetical protein	NA	NA	NA	NA
WP_036992222.1\|4836434_4836722_-	hypothetical protein	NA	NA	NA	NA
WP_004421258.1\|4836780_4837560_-	hypothetical protein	A0A1B0YZT8	Pseudomonas_phage	2.5e-57	47.6
WP_004421255.1\|4837618_4838080_-	hypothetical protein	A0A1W6JT75	Pseudomonas_phage	5.0e-37	51.3
WP_051050713.1\|4838076_4838352_-	hypothetical protein	A0A1B0YZU3	Pseudomonas_phage	1.0e-13	48.2
WP_004421252.1\|4838399_4839398_-\|capsid	major capsid protein	A0A2H4J890	uncultured_Caudovirales_phage	3.6e-117	62.9
WP_004421251.1\|4839465_4840101_-\|head	head decoration protein	NA	NA	NA	NA
WP_004421249.1\|4840097_4841303_-\|protease	Clp protease ClpP	A0A2H4JDI2	uncultured_Caudovirales_phage	5.4e-75	43.8
WP_036992235.1\|4841299_4842763_-\|portal	phage portal protein	A0A2H4JFL5	uncultured_Caudovirales_phage	2.0e-180	66.0
WP_004421246.1\|4842762_4842981_-	hypothetical protein	NA	NA	NA	NA
WP_004421245.1\|4842994_4844974_-\|terminase	phage terminase large subunit family protein	A0A2H4J898	uncultured_Caudovirales_phage	8.1e-278	69.3
WP_036992220.1\|4844977_4845559_-	hypothetical protein	A0A2H4JG15	uncultured_Caudovirales_phage	1.4e-44	54.3
WP_036992219.1\|4845711_4846449_-	hypothetical protein	A0A1W6JTE1	Pseudomonas_phage	9.6e-75	59.7
WP_004421238.1\|4846473_4846824_-	hypothetical protein	A0A2H4J893	uncultured_Caudovirales_phage	4.9e-21	48.2
WP_004421234.1\|4847986_4850752_-	hypothetical protein	A0A2H4JF22	uncultured_Caudovirales_phage	0.0e+00	63.5
WP_004421232.1\|4850794_4851001_-	hypothetical protein	H2BDI2	Pseudomonas_virus	1.8e-07	45.8
WP_004421230.1\|4850993_4851482_-	hypothetical protein	A0A2H4JFM0	uncultured_Caudovirales_phage	6.6e-32	57.0
WP_036992216.1\|4851651_4851861_-	hypothetical protein	NA	NA	NA	NA
WP_081608060.1\|4852129_4852675_+	hypothetical protein	A0A0A0YR73	Pseudomonas_phage	2.0e-05	57.8
WP_004421228.1\|4852816_4852999_+	hypothetical protein	NA	NA	NA	NA
WP_004421226.1\|4852995_4853274_+	hypothetical protein	NA	NA	NA	NA
WP_004421224.1\|4853270_4853843_+	hypothetical protein	A0A2H4J8A1	uncultured_Caudovirales_phage	3.4e-43	49.7
WP_004421222.1\|4853853_4854138_+	hypothetical protein	A0A2H4JBX5	uncultured_Caudovirales_phage	5.2e-13	44.7
WP_004421221.1\|4854134_4854515_+	hypothetical protein	A0A2H4J897	uncultured_Caudovirales_phage	1.3e-11	35.5
WP_004421220.1\|4854511_4854751_+	transcriptional regulator	NA	NA	NA	NA
WP_004421217.1\|4854804_4855149_+	hypothetical protein	A0A2D1GMS3	Marinobacter_phage	5.9e-11	33.3
WP_004421215.1\|4855190_4856015_+	DUF2303 family protein	I3PUY7	Vibrio_phage	5.7e-44	43.7
WP_051050711.1\|4856654_4856873_+	hypothetical protein	NA	NA	NA	NA
WP_004421211.1\|4856869_4857442_+	3'-5' exoribonuclease	K7PLW7	Enterobacteria_phage	9.5e-30	43.6
WP_004421209.1\|4857438_4858014_+	hypothetical protein	Q8SBG0	Shigella_phage	1.5e-27	44.1
WP_004421202.1\|4859415_4861227_+	DNA cytosine methyltransferase	H9C171	Pectobacterium_phage	4.8e-136	44.6
WP_004421199.1\|4861223_4862414_+	site-specific DNA-methyltransferase	A0A060D598	Salmonella_phage	4.6e-95	49.7
WP_004421197.1\|4862410_4862878_+	hypothetical protein	A0A2H4J101	uncultured_Caudovirales_phage	3.7e-32	47.7
WP_004421194.1\|4862874_4863072_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_036992210.1\|4863079_4864255_-\|integrase	integrase arm-type DNA-binding domain-containing protein	Q7M297	Enterobacteria_phage	5.3e-75	38.4
4872298:4872315	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_AP014862

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection