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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_AP014814 Methylorubrum populi strain P-1M plasmid pMPPM05, complete sequence 0 crisprs c2c4_V-U1 0 0 0 0
NZ_AP014813 Methylorubrum populi strain P-1M plasmid pMPPM04, complete sequence 0 crisprs NA 0 0 0 0
NZ_AP014811 Methylorubrum populi strain P-1M plasmid pMPPM02, complete sequence 0 crisprs NA 0 0 0 0
NZ_AP014812 Methylorubrum populi strain P-1M plasmid pMPPM03, complete sequence 0 crisprs NA 0 0 0 0
NZ_AP014809 Methylorubrum populi strain P-1M 5 crisprs DEDDh,csa3,c2c9_V-U4,WYL,cas3,RT,Cas9_archaeal 0 1 4 0
NZ_AP014810 Methylorubrum populi strain P-1M plasmid pMPPM01, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_AP014809
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_AP014809_1 2740824-2740902 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_AP014809_2 2740995-2741096 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_AP014809_3 2776560-2776654 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_AP014809_4 4482492-4482584 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_AP014809_5 4904944-4905041 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_AP014809_1 1.1|2740848|30|NZ_AP014809|CRISPRCasFinder 2740848-2740877 30 CP047389 Agrobacterium sp. CGMCC 11546 plasmid pA 170402-170431 6 0.8
NZ_AP014809_1 1.1|2740848|30|NZ_AP014809|CRISPRCasFinder 2740848-2740877 30 NZ_AP022593 Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence 5343849-5343878 6 0.8
NZ_AP014809_1 1.1|2740848|30|NZ_AP014809|CRISPRCasFinder 2740848-2740877 30 NZ_CP050092 Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b6, complete sequence 462783-462812 7 0.767
NZ_AP014809_1 1.1|2740848|30|NZ_AP014809|CRISPRCasFinder 2740848-2740877 30 NZ_CP054617 Azospirillum oryzae strain KACC 14407 plasmid unnamed3, complete sequence 509758-509787 8 0.733
NZ_AP014809_1 1.1|2740848|30|NZ_AP014809|CRISPRCasFinder 2740848-2740877 30 NZ_LR134451 Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 9, complete sequence 96575-96604 8 0.733
NZ_AP014809_1 1.1|2740848|30|NZ_AP014809|CRISPRCasFinder 2740848-2740877 30 NZ_CP029830 Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence 556388-556417 8 0.733
NZ_AP014809_1 1.1|2740848|30|NZ_AP014809|CRISPRCasFinder 2740848-2740877 30 NZ_CP025986 Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence 1283091-1283120 8 0.733

1. spacer 1.1|2740848|30|NZ_AP014809|CRISPRCasFinder matches to CP047389 (Agrobacterium sp. CGMCC 11546 plasmid pA) position: , mismatch: 6, identity: 0.8

gaacgggtcgcgacgcgatcaccatcggcg	CRISPR spacer
cagtcgatcgcaacgcgatcaccatcggcg	Protospacer
 *.. *.****.******************

2. spacer 1.1|2740848|30|NZ_AP014809|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 6, identity: 0.8

gaacgggtcgcgacgcgatcaccatcggcg	CRISPR spacer
ggatgcgtcgcgacgcgagcagcatcggct	Protospacer
*.*.* ************ ** ******* 

3. spacer 1.1|2740848|30|NZ_AP014809|CRISPRCasFinder matches to NZ_CP050092 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b6, complete sequence) position: , mismatch: 7, identity: 0.767

gaacgggtcgcgacgcgatcaccatcggcg	CRISPR spacer
gggctattcgcgacgcgatcgccgtcggcg	Protospacer
*..* . *************.**.******

4. spacer 1.1|2740848|30|NZ_AP014809|CRISPRCasFinder matches to NZ_CP054617 (Azospirillum oryzae strain KACC 14407 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.733

gaacgggtcgcgacgcgatcaccatcggcg	CRISPR spacer
gcgagatcggcgacgcggtcaccatcggcg	Protospacer
* . *. . ********.************

5. spacer 1.1|2740848|30|NZ_AP014809|CRISPRCasFinder matches to NZ_LR134451 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 9, complete sequence) position: , mismatch: 8, identity: 0.733

gaacgggtcgcgacgcgatcaccatcggcg	CRISPR spacer
acggcgatcgcgacgagatcaccagcggcg	Protospacer
. .  *.******** ******** *****

6. spacer 1.1|2740848|30|NZ_AP014809|CRISPRCasFinder matches to NZ_CP029830 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

gaacgggtcgcgacgcgatcaccatcggcg	CRISPR spacer
gcgagatcggcgacgcggtcaccatcggcg	Protospacer
* . *. . ********.************

7. spacer 1.1|2740848|30|NZ_AP014809|CRISPRCasFinder matches to NZ_CP025986 (Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence) position: , mismatch: 8, identity: 0.733

gaacgggtcgcgacgcgatcaccatcggcg	CRISPR spacer
gcgtgctgcgcgacccgatcaccatcggcc	Protospacer
* ..*   ****** ************** 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 73861 : 107838 27 Leptospira_phage(33.33%) integrase,transposase attL 71996:72040|attR 117270:117314
DBSCAN-SWA_2 1565750 : 1575542 12 Paracoccus_phage(40.0%) protease,head,tail NA
DBSCAN-SWA_3 2813183 : 2821508 14 Brucella_phage(16.67%) integrase attL 2815642:2815659|attR 2826425:2826442
DBSCAN-SWA_4 5053173 : 5067890 19 uncultured_Caudovirales_phage(33.33%) capsid,head NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage