CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_AP017373	Lactococcus garvieae strain 122061	2 crisprs	RT,DEDDh,csa3,cas3,DinG	0	0	8	0
NZ_AP017399	Lactococcus garvieae strain 122061 plasmid pNALG-1, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_AP017373_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP017373_1

1173506-1173623

Orphan

Consensus_repeat	Method
AAAAATTTCACGCGTATTTTCACGCGTATTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP017373_1

>merge|NZ_AP017373|1|1173506-1173623|CRISPRCasFinder
AAAAATTTCACGCGTATTTTCACGCGTATTTCGAATGAAGAAATAGGGATATTATCAAGGTAATAAAGTTCAATTATAGTTTTGCTTAAAAATTTCACGCGTATTTTCACGCGTATTT

>NZ_AP017373|1|1|1173506-1173623|CRISPRCasFinder
AAAAATTTCACGCGTATTTTCACGCGTATTT	CGAATGAAGAAATAGGGATATTATCAAGGTAATAAAGTTCAATTATAGTTTTGCTT
AAAAATTTCACGCGTATTTTCACGCGTATTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP017373.1\|WP_096368869.1\|1163257_1164028_+\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176506
NZ_AP017373.1\|WP_003133590.1\|1165251_1166376_+\|thiamine-pyrophosphate-dependent-dehydrogenase-E1-component-subunit-alpha	unknown	unknown	gnl\|CDD\|213783
NZ_AP017373.1\|WP_185767488.1\|1176610_1176793_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017373.1\|WP_017370377.1\|1168961_1170383_+\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|235798
NZ_AP017373.1\|WP_096368873.1\|1170416_1171175_-\|DNA-repair-protein-RecO	unknown	unknown	gnl\|CDD\|273175
NZ_AP017373.1\|WP_096368867.1\|1161558_1162590_+\|tryptophan--tRNA-ligase	unknown	unknown	gnl\|CDD\|183400
NZ_AP017373.1\|WP_096368874.1\|1171804_1172986_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271189
NZ_AP017373.1\|WP_096368881.1\|1178922_1179105_+\|DUF1655-domain-containing-protein	unknown	unknown	gnl\|CDD\|285151
NZ_AP017373.1\|WP_096368880.1\|1178629_1178923_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017373.1\|WP_096368879.1\|1178265_1178526_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017373.1\|WP_096368877.1\|1176802_1177354_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017373.1\|WP_096368876.1\|1175174_1176488_-\|DNA/RNA-non-specific-endonuclease	unknown	unknown	gnl\|CDD\|164869
NZ_AP017373.1\|WP_096368870.1\|1164223_1165219_+\|lipoate--protein-ligase	unknown	unknown	gnl\|CDD\|161920
NZ_AP017373.1\|WP_096368878.1\|1177365_1177749_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_AP017373.1\|WP_096368871.1\|1166378_1167359_+\|alpha-ketoacid-dehydrogenase-subunit-beta	unknown	unknown	gnl\|CDD\|223101
NZ_AP017373.1\|WP_019292609.1\|1178016_1178223_+\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378971
NZ_AP017373.1\|WP_096368882.1\|1179101_1179389_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017373.1\|WP_185767489.1\|1179527_1179680_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017373.1\|WP_096368872.1\|1167351_1168938_+\|2-oxo-acid-dehydrogenase-subunit-E2	unknown	unknown	gnl\|CDD\|237000
NZ_AP017373.1\|WP_096368868.1\|1162607_1163246_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224336

Protein	Function_ID	Function_description	E-value
NZ_AP017373.1\|WP_096368869.1\|1163257_1164028_+\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|176506	cd08563, GDPD_TtGDE_like, Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.	4.52356e-95
NZ_AP017373.1\|WP_003133590.1\|1165251_1166376_+\|thiamine-pyrophosphate-dependent-dehydrogenase-E1-component-subunit-alpha	gnl\|CDD\|213783	TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. [Energy metabolism, Pyruvate dehydrogenase].	4.64119e-157
NZ_AP017373.1\|WP_017370377.1\|1168961_1170383_+\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|235798	PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.	0
NZ_AP017373.1\|WP_096368873.1\|1170416_1171175_-\|DNA-repair-protein-RecO	gnl\|CDD\|273175	TIGR00613, DNA_repair_protein_RecO, DNA repair protein RecO. All proteins in this family for which functions are known are DNA binding proteins that are involved in the initiation of recombination or recombinational repair. [DNA metabolism, DNA replication, recombination, and repair].	6.68643e-66
NZ_AP017373.1\|WP_096368867.1\|1161558_1162590_+\|tryptophan--tRNA-ligase	gnl\|CDD\|183400	PRK12282, PRK12282, tryptophanyl-tRNA synthetase II; Reviewed.	0
NZ_AP017373.1\|WP_096368874.1\|1171804_1172986_-\|site-specific-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.04482e-42
NZ_AP017373.1\|WP_096368881.1\|1178922_1179105_+\|DUF1655-domain-containing-protein	gnl\|CDD\|285151	pfam07868, DUF1655, Protein of unknown function (DUF1655). This protein is found in some prophages found in Lactobacillales lactis.	1.47133e-06
NZ_AP017373.1\|WP_096368876.1\|1175174_1176488_-\|DNA/RNA-non-specific-endonuclease	gnl\|CDD\|164869	PHA01790, PHA01790, streptodornase.	2.95389e-11
NZ_AP017373.1\|WP_096368870.1\|1164223_1165219_+\|lipoate--protein-ligase	gnl\|CDD\|161920	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase. One member of this group of proteins is bovine lipoyltransferase, which transfers the lipoyl group from lipoyl-AMP to the specific Lys of lipoate-dependent enzymes. However, it does not first activate lipoic acid with ATP to create lipoyl-AMP and pyrophosphate. Another member of this group, lipoate-protein ligase A from E. coli, catalyzes both the activation and the transfer of lipoate. Homology between the two is full-length, except for the bovine mitochondrial targeting signal, but is strongest toward the N-terminus. [Protein fate, Protein modification and repair].	2.39245e-92
NZ_AP017373.1\|WP_096368878.1\|1177365_1177749_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	7.10991e-08
NZ_AP017373.1\|WP_096368871.1\|1166378_1167359_+\|alpha-ketoacid-dehydrogenase-subunit-beta	gnl\|CDD\|223101	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion].	2.37739e-171
NZ_AP017373.1\|WP_019292609.1\|1178016_1178223_+\|XRE-family-transcriptional-regulator	gnl\|CDD\|378971	pfam12844, HTH_19, Helix-turn-helix domain. Members of this family contains a DNA-binding helix-turn-helix domain. This family contains many example antitoxins from bacterial toxin-antitoxin systems. These antitoxins are likely to be DNA-binding domains.	0.00430917
NZ_AP017373.1\|WP_096368872.1\|1167351_1168938_+\|2-oxo-acid-dehydrogenase-subunit-E2	gnl\|CDD\|237000	PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed.	0
NZ_AP017373.1\|WP_096368868.1\|1162607_1163246_+\|HD-domain-containing-protein	gnl\|CDD\|224336	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only].	1.59444e-25

>NZ_AP017373.1|WP_096368874.1|1171804_1172986_-|site-specific-integrase
MNIQEYKMKNGKGYILKGAYIGIDNLTGKQVRTDIRARTKKGVKNELERHRSEFKKNGSIKRKENLNTFEEVTEHWFEQYKLGVKPRTIQITGAILRTYILPALGTYKISKITPVMLQTIVNKWAKNATKPLNGANHREIGKGKNFKVYFRYVNKIFCHAVSLGIVEDNPCKNILIPKVNLESTEKKVKFFNKEQLGTFFGYLDTLPKNYTNQLMKALCRLLVSSGLRVGEAVSLSWSDIDLDNKTVSVSKTSLRGVIQDTPKTKTSTRKIIIDNKAIAELKQWKNFQTRHFFKIGSPRQPLVFPTKTGAVLDYQTMRPFLNRYFEACSLPHIGFHGFRHSHASLLLNAGVSYKEIQTRLGHSSIKMTMDIYSHLEDEKQQQAVEIFEKFANF
>NZ_AP017373.1|WP_096368873.1|1170416_1171175_-|DNA-repair-protein-RecO
MKSVETRGLVLYIKNYREKDKLVKIFTESFGKRMFFVKNFARSKYASSLQNFTSASLMGTINDEGFSFVDDVSDTITYKHISEDIFLNAHASYIISLADAAIPDNQYDPSLYAFLIKCLDLLDEGFDKEIVTNIFELQVLSRFGVSLNCAECAFCHSKQGPFDYSYKFNACLCKQHFGEDMRRLHLDPNVLYLINLFQEISLDQLEKISVKREMKEKIRLFIDGIYDEYVGIHLKSKKFLDGMKDWADIMKE
>NZ_AP017373.1|WP_017370377.1|1168961_1170383_+|dihydrolipoyl-dehydrogenase
MVVGAQATEVDTVVIGSGPGGYVAAIRAAELGKKVVVIEKDNVGGVCLNIGCIPSKALINVGHHYQDALKQEAGKSPFGLSNGEVNLDWTAAQAWKDDKVVKQLTGGIAMLLKKHKIELIKGTAEFLDNETINVEQEDGFQLLNFQNAIIATGSRPIEIPSFPYGGRIIDSTGALNLKEIPKHLIIVGGGVIGSELGGAYRMLGSKITIVEGLDHILNGFDKEMSDIIANRVKTAGSEIFTSAMAKSATQTDTDVTLTFEVDGKEQTVTGDYLLVSVGRRPNTDMLGLNNTDVKLTDRGLIEVDDSFQTSVPHIYAIGDVVPGPMLAHKASFQAKIAAAAIAGGEDAVDLHIALPAVAYTTTELATVGETPESVKDRMDQVKISKFPFAANGRAISMDDTTGFIRLITENKEGAVIGAQIVGPGASDLISGLALAIENGLTSKDISLTIQPHPTLGEAIMDTAEIADGLPIHV
>NZ_AP017373.1|WP_096368872.1|1167351_1168938_+|2-oxo-acid-dehydrogenase-subunit-E2
MTEIFKMPDIGEGMHEGDIANWLVKVGDVVKEDDPVAEVQNDKLMQEILSPYSGTVTKLFVEAGTTVEVGAPLIEYDGDGSSEADTAEATPAASSEAPSGEAQIFTMPDIGEGMHEGDIANWLVKVGDDVKEDDPVAEVQNDKLMQEILSPYSGKVTKLFVEAGTTVEVGAPLIEYNGNGSTAAPTSAPQAAPTATADAAPAAPKTEGGATTRTTADGRVLAMPSVRHYAREHGIDLTQVQSTGRHGHTTLADVKAFASGAAAPKAAAPAEAKPAPKAATAKPAAPKPAPAPVQAAEGDRREPMTPTRKAISNAMSTQNANIPAVTNFDQVEVSKLVAHRKEYKEIAAKQDVKLTYLAYVTKALAATAKKFPEINASIDGTDIVYHNDVNIGIAVNAPSGLYVPVIKNADKKSIFTIAKEISELAEAVRTGSIKPDQMRGSTITISNIGSARGTWFTPIINGSDVMILGLGSIVKEPIVNAEGELAVGQNMKLSVSYDHRLIDGMLGQGSLNYLKSLLADPAYMLMEV
>NZ_AP017373.1|WP_096368871.1|1166378_1167359_+|alpha-ketoacid-dehydrogenase-subunit-beta
MAVKTYIAAITEALDLALERDENTLIFGEDVGQNGGVFRATDGLQAKHGEDRVFNTPLAESGIGGLAIGLSTQGFRPVMEIQFGTFVYEVFDSIAGQMSRTRYRFNNTRHNPIVIRTPYGIGTKTPEMHADSIEGLFAQIPGLRVVMPSNPADAKGLLLAAIENNDPVMYLENLHLYRSVKGEVPEGYYTTPLDQAVVAKEGSDVSIIAYGGTVPLAIKAAEQLEKDGVSAEVLDLRTVSPLDIKSIGETVEKTGRVVVVQEAQRTAGIAANVMAEISERFVLSLKAPIGRVAGPDSIFPFAQAENDWAIKADDIVKKVKEVVDYD
>NZ_AP017373.1|WP_003133590.1|1165251_1166376_+|thiamine-pyrophosphate-dependent-dehydrogenase-E1-component-subunit-alpha
MSNSTKILDFKEQLELQDSAFPTLQILDENGKIVDEEGLKRADLSDQDLVELFKNMLLSRQIDIRCMKLAKQGRMGFFGPTAGQEASQMASAFAFTDEDWLFPGYRDLPQIYAKGWPIWKGLLWSRGHQLGNEYTTDEGAEVKSWFPQIIIGAQYVEAAGVALGLKKRKKDAVAFVYTGDGGSSQGDTYEGINFASAYKAPLVAFIQNNGYAISTPRELQTAAPHLAAKGWAAGAPSIVVDGNDAIAMYLAAKEARAWAVAGNGPVVIEALTNRLEPHSTAGDDPLRYRSQEGLDAWWAKEPLLRMRTYLTEKGIWDDAQEEAYIAELDARIDADIKKANNVEKQKISSFLKNTLEVPSQVMAEQIAKFESEGK
>NZ_AP017373.1|WP_096368870.1|1164223_1165219_+|lipoate--protein-ligase
MQYINYLGQDAYTNIAMDSWLLNNLKADEPVFSLWQNKRAVIVGRNQNTFAEINQDYIDQHDVQVVRRVSGGGAVYHDEGNICFTFFVPVASSAQVNFHQFVKPMYDALRSLGIEAEITGRNDLEISGKKVSGNAQRYAGGYLMHHGTLLWDTDVEAMIRSLNVSDEKFVSKAAKSVRARVGNIKDFAPDLNLDTFIDALKYYLTDQGKDGEYVLNDEQLAGIKAARDEQFSTWDWNYGESPKFSFNNHAKFTGGSIDIQVDVDNGLITDINFLGDFLGVRDWRDIKQDFIGLPFNPDAVYNVLEKNKAGQYFGTIENSELSQLFRADELV
>NZ_AP017373.1|WP_096368869.1|1163257_1164028_+|glycerophosphodiester-phosphodiesterase
MVLAKNNTFMENWNTCLVFAHRGSKCNRPENTLAAFQEALRIKTDGIELDVHLSKDDQLVVIHDEKVNRTTSGKGRVRNLTLAELKKLDAGSWFDERFQGERIPTLHEVLDLLISENFTGFLNIELKADIISYPGIEERVLGLVSQQSLPFTIIYSSFNINTLQKLHALGVKDEIAYLAGKKLQKISLNKVRSFMSSLHLKKKYVLKYPELLAPDSRPLRLWGIDSEADMRYAFQHNIAGIFTDFPEKALKIRQHL
>NZ_AP017373.1|WP_096368868.1|1162607_1163246_+|HD-domain-containing-protein
MTTQEKIAAFAKKIHENNNDGHGFDHVSRVVKLAKQILATEPLADPSLVVAAAYLHDTYDEKICCDVTKKKQNVADFLTSLDFSQEKQDKLFYIIDNMSYSANLLEKKELDINGQIVQDADRIDAMGAWGIVRTLEYGWSKGRTFYDPQIFPEKFENKHTYHQNQGTTLNHFYEKLFLLKGLLNTAHAKKIAAKRDKIMHDFVTAIEEEYNI
>NZ_AP017373.1|WP_096368867.1|1161558_1162590_+|tryptophan--tRNA-ligase
MNKPTILTGDRPTGKLHIGHYVGSLKNRVLLQNTGKYNMFVFLADQQALTDHAKEPEKIIQSVGDVALDYLAAGLDPEKSTIFIQSQIPELAELSMYYMNLVSLARLERNPTVKTEIAQKAFGESIPAGFLVYPIAQAADITAFKANLVPVGNDQKPMIEQCREIARSFNNAYNCDVLVEPEGLYPENEAAGRLPGLDGNAKMSKSLGNGIYLADDMDTLKKKVMSMYTDPDHIKVEDPGKIEGNMVFHYLDVFGREEDAATIAEMKEHYQAGGLGDVKTKRYLLDILDRELSPIRERRIEFAKDMGAVYDMLQAGSEKARAVAANTLSEVKSAMGINYFDAK
>NZ_AP017373.1|WP_096368876.1|1175174_1176488_-|DNA/RNA-non-specific-endonuclease
MKNNKSKKWWFWVLVVLLFPFFCLYGIYRLVVNYKQTGRKIWLVGIVPLAFLSLSGFAGYIGAVTDSSPDNKTETAISSSVSSQKSSSPKLSSSKIKESSSKPSSSKTVKKVVSSSASSSSTASTNDVLKKLNEYTNVKSAGPTSNYYWENGSAKISGFESLNAGEHIFNADDKGRSGVARAILTYSQYEVSKGSRQGQPLDPPAWPSSNPKIAITFSLTGRTYHGYLYNRSHSIADSLLGEGSYTSQYNFTTGTRSQNVGANQNGGMRYAEELVEDYWKANPNTSSTVNYQTTPVYNADETVPRGSIVDIKSSDSTLNVEIVVINSAEGIEIDYVSGTPISSTTEPVQSASPPESSPETPELAPVVTESSSQDVADDNSYTTNGEWTTAAPGMVFVSDSNKYYSSVTNPGNYRYMTEAEASNIAEPAKRGNQYARP
>NZ_AP017373.1|WP_185767488.1|1176610_1176793_-|hypothetical-protein
MRETRKIIDINEKRLSDKHLVQEIRKANLYHGSGWLNEKRKEFFRGLLQDTIQRRFKRYK
>NZ_AP017373.1|WP_096368877.1|1176802_1177354_-|hypothetical-protein
MDKQEINSLLICEIEKLGVVYRLGDLDNQKAFISLELGFGAYTELATPFDHAHEYMHAYYKDERRQGECDTLSRAERRANKEAILLLWDWFIKNGGGFNNIAQFCAVTGCPYSMTVRLVTSLCCDMSDKSFRECAVEYISQFDVITRDTINIYNFLDYYGYPHNAYDEAKALLFELCWFELAG
>NZ_AP017373.1|WP_096368878.1|1177365_1177749_-|helix-turn-helix-transcriptional-regulator
MTVYDRIKELADKKRVSLRQVAFDLGLGETYLYQLRKKTPNGANLEKLADYFNVSVDYLLGREEAKPVNEPIDLAEVANSDDDAVWSRLLSSGGRPLTEKDKMAIKLLFSDKWDEITQKAKDLDDKK
>NZ_AP017373.1|WP_019292609.1|1178016_1178223_+|XRE-family-transcriptional-regulator
MIDTTQNMDTYRLKIKQYLSDKGWTQQALVRLTGYPKQDVSAILLGKQKGTPYANIFITAVCEAYKIN
>NZ_AP017373.1|WP_096368879.1|1178265_1178526_+|hypothetical-protein
MNKLNQAISQSKNSKPYYHKIIIDLLVQLTTEGKYRSLRAFKKSGDKLTIEQKETLRAYTDSIICMLQAGLAFHEIKEFLTKEKAV
>NZ_AP017373.1|WP_096368880.1|1178629_1178923_+|hypothetical-protein
MVKTPYTVLMYRRILKRLLEIQDFYSFDIYNYQSETAPSLYSYLLVLHRDNGTALRKVLSKIFTSQDSRTIFIVADQYASKELSRIKNKGKITEELA
>NZ_AP017373.1|WP_096368881.1|1178922_1179105_+|DUF1655-domain-containing-protein
MTEFITVDEAKVLFGKCLAKARHHIEIDDNTDKLFDGRTIVTFTFLGDCYQVEYIGGVKA
>NZ_AP017373.1|WP_096368882.1|1179101_1179389_+|hypothetical-protein
MKNKDTAKQEMIEFYLLDIIRKNLTIRSLSMMLSDMVSTLESDKELRTYTGHFQEMQTLLECILDESNSNDEDLDKTRTHFEQLTASRKKVTNEI
>NZ_AP017373.1|WP_185767489.1|1179527_1179680_+|hypothetical-protein
MRFKKIKKWCISHHTEIKPLAVFDKNERLAFINRPYPIKLKYKLAKGGRQ

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Crispr_ID: NZ_AP017373_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP017373_2

1562065-1562176

Orphan

Consensus_repeat	Method
CCAACGGATCCAGTAGATCCGACAGACCCGGTTGACCCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP017373_2

>merge|NZ_AP017373|2|1562065-1562176|CRISPRCasFinder
CCAACGGACCCCACAGATCCAACGGATCCAGTAAATCCGACAGACCCAGTTAATCCAACGGATCCAGTAGATCCGACAGACCCGGTTGACCCAATGGACCCAGTAGATCCGA

>NZ_AP017373|2|2|1562065-1562176|CRISPRCasFinder
CCAACGGACCCCACAGATCCAACGGATCCAGTAAATCCGA	CAGACCCAGTTAATCCAACGGATCCAGTAGAT
CCGACAGACCCGGTTGACCCAATGGACCCAGTAGATCCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP017373.1\|WP_096369118.1\|1567706_1569323_+\|ribonuclease-Y	unknown	unknown	gnl\|CDD\|237177
NZ_AP017373.1\|WP_003133411.1\|1551232_1553173_+\|threonine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234752
NZ_AP017373.1\|WP_017369123.1\|1564904_1565264_+\|PspC-domain-containing-protein	unknown	unknown	gnl\|CDD\|224894
NZ_AP017373.1\|WP_003133409.1\|1542406_1542724_+\|ribonucleotide-reductase	unknown	unknown	gnl\|CDD\|236436
NZ_AP017373.1\|WP_096369109.1\|1555116_1555962_+\|PRD-domain-containing-protein	unknown	unknown	gnl\|CDD\|170086
NZ_AP017373.1\|WP_096369119.1\|1570220_1570577_+\|DNA-directed-RNA-polymerase-subunit-omega	unknown	unknown	gnl\|CDD\|234744
NZ_AP017373.1\|WP_017369117.1\|1573297_1573954_+\|deoxynucleoside-kinase	unknown	unknown	gnl\|CDD\|224345
NZ_AP017373.1\|WP_096369117.1\|1566226_1567420_+\|methionine-adenosyltransferase	unknown	unknown	gnl\|CDD\|235374
NZ_AP017373.1\|WP_096369108.1\|1554430_1554922_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226125
NZ_AP017373.1\|WP_096369115.1\|1563543_1564632_+\|DUF4097-domain-containing-protein	unknown	unknown	gnl\|CDD\|226123
NZ_AP017373.1\|WP_096369111.1\|1557974_1559411_+\|family-1-glycosylhydrolase	unknown	unknown	gnl\|CDD\|181973
NZ_AP017373.1\|WP_096369116.1\|1565331_1566081_-\|biotin--[acetyl-CoA-carboxylase]-ligase	unknown	unknown	gnl\|CDD\|237010
NZ_AP017373.1\|WP_096369112.1\|1559429_1560866_+\|glycoside-hydrolase-family-1-protein	unknown	unknown	gnl\|CDD\|225343
NZ_AP017373.1\|WP_017369131.1\|1553328_1554225_+\|fructose-bisphosphate-aldolase	unknown	unknown	gnl\|CDD\|180926
NZ_AP017373.1\|WP_096369110.1\|1556034_1557960_+\|PTS-glucose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|273919
NZ_AP017373.1\|WP_096369107.1\|1549922_1550870_+\|ferrochelatase	unknown	unknown	gnl\|CDD\|366291
NZ_AP017373.1\|WP_096369113.1\|1560924_1561614_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_AP017373.1\|WP_017369120.1\|1569477_1570107_+\|guanylate-kinase	unknown	unknown	gnl\|CDD\|234719
NZ_AP017373.1\|WP_096369120.1\|1570723_1573051_+\|primosomal-protein-N'	unknown	unknown	gnl\|CDD\|224119
NZ_AP017373.1\|WP_017369124.1\|1564669_1564870_+\|PspC-domain-containing-protein	unknown	unknown	gnl\|CDD\|224894

Protein	Function_ID	Function_description	E-value
NZ_AP017373.1\|WP_096369118.1\|1567706_1569323_+\|ribonuclease-Y	gnl\|CDD\|237177	PRK12704, PRK12704, phosphodiesterase; Provisional.	0
NZ_AP017373.1\|WP_003133411.1\|1551232_1553173_+\|threonine--tRNA-ligase	gnl\|CDD\|234752	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed.	0
NZ_AP017373.1\|WP_017369123.1\|1564904_1565264_+\|PspC-domain-containing-protein	gnl\|CDD\|224894	COG1983, PspC, Putative stress-responsive transcriptional regulator [Transcription / Signal transduction mechanisms].	9.27977e-21
NZ_AP017373.1\|WP_003133409.1\|1542406_1542724_+\|ribonucleotide-reductase	gnl\|CDD\|236436	PRK09263, PRK09263, anaerobic ribonucleoside triphosphate reductase; Provisional.	2.10034e-13
NZ_AP017373.1\|WP_096369109.1\|1555116_1555962_+\|PRD-domain-containing-protein	gnl\|CDD\|170086	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional.	3.68816e-52
NZ_AP017373.1\|WP_096369119.1\|1570220_1570577_+\|DNA-directed-RNA-polymerase-subunit-omega	gnl\|CDD\|234744	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed.	5.62391e-19
NZ_AP017373.1\|WP_017369117.1\|1573297_1573954_+\|deoxynucleoside-kinase	gnl\|CDD\|224345	COG1428, COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism].	7.66274e-81
NZ_AP017373.1\|WP_096369117.1\|1566226_1567420_+\|methionine-adenosyltransferase	gnl\|CDD\|235374	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.	0
NZ_AP017373.1\|WP_096369108.1\|1554430_1554922_+\|hypothetical-protein	gnl\|CDD\|226125	COG3597, COG3597, Uncharacterized protein/domain associated with GTPases [Function unknown].	1.84022e-19
NZ_AP017373.1\|WP_096369115.1\|1563543_1564632_+\|DUF4097-domain-containing-protein	gnl\|CDD\|226123	COG3595, COG3595, Uncharacterized conserved protein [Function unknown].	4.13887e-29
NZ_AP017373.1\|WP_096369111.1\|1557974_1559411_+\|family-1-glycosylhydrolase	gnl\|CDD\|181973	PRK09589, celA, 6-phospho-beta-glucosidase; Reviewed.	0
NZ_AP017373.1\|WP_096369116.1\|1565331_1566081_-\|biotin--[acetyl-CoA-carboxylase]-ligase	gnl\|CDD\|237010	PRK11886, PRK11886, bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA.	4.78126e-66
NZ_AP017373.1\|WP_096369112.1\|1559429_1560866_+\|glycoside-hydrolase-family-1-protein	gnl\|CDD\|225343	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism].	0
NZ_AP017373.1\|WP_017369131.1\|1553328_1554225_+\|fructose-bisphosphate-aldolase	gnl\|CDD\|180926	PRK07315, PRK07315, fructose-bisphosphate aldolase; Provisional.	0
NZ_AP017373.1\|WP_096369110.1\|1556034_1557960_+\|PTS-glucose-transporter-subunit-IIA	gnl\|CDD\|273919	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.	0
NZ_AP017373.1\|WP_096369107.1\|1549922_1550870_+\|ferrochelatase	gnl\|CDD\|366291	pfam00762, Ferrochelatase, Ferrochelatase.	1.00075e-137
NZ_AP017373.1\|WP_096369113.1\|1560924_1561614_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	4.53042e-25
NZ_AP017373.1\|WP_017369120.1\|1569477_1570107_+\|guanylate-kinase	gnl\|CDD\|234719	PRK00300, gmk, guanylate kinase; Provisional.	2.35614e-121
NZ_AP017373.1\|WP_096369120.1\|1570723_1573051_+\|primosomal-protein-N'	gnl\|CDD\|224119	COG1198, PriA, Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair].	0
NZ_AP017373.1\|WP_017369124.1\|1564669_1564870_+\|PspC-domain-containing-protein	gnl\|CDD\|224894	COG1983, PspC, Putative stress-responsive transcriptional regulator [Transcription / Signal transduction mechanisms].	1.05858e-14

>NZ_AP017373.1|WP_096369113.1|1560924_1561614_-|alpha/beta-hydrolase
MEKYIITSDNVKIYYKIEGEGPALLLLHGNSQNSNIFKRLIKRLKGYYTCISIDTRGHGKSLFYGKKLSFNRLMQDVLEVVQAEDLKSINLLGFSDGANIAMLLASKYPTRINRLILNAGNSTYAGLYALVRFTVKFLNICAHMLRRPSPALQLLLEDSLQSMNELEKITAPTLVINGQFDVVKTSHAHDIARHIPNSQFFIIPWGSHLSFYFRPTNFSRIVRHFLEDT
>NZ_AP017373.1|WP_096369112.1|1559429_1560866_+|glycoside-hydrolase-family-1-protein
MTFKTDFLWGGATAANQLEGAFNVDGKGLSVADAMPGGKERLAILNSPDFDWTIDESKHVYPNHKGIDHYHHFKEDIALFAEMGFKAYRFSVAWSRIFPKGKESEPNEAGLNFYDQLIDECLKYGIEPVVTISHYEMPLNLAKEYGGWKNRELIDFYVRYAKVLLERYQDKVRYWMTFNEINSATFFAALGQGLVPSNGGNDKKNVFQAWHNQFVASALTVEFGHGLNKNLQIGCMSIYSTTYAFDANPVNQIAAQQSIQEFNYFCNDVQVRGEYPVFTQRLHKKYGIKEEELKITKEDLEALKRGTVDYIGFSYYMSTVESKTQEGVEASGNMVLGGVKNPFLKESEWGWAVDPDGLRYALNDLYGRYQVSLFIVENGLGAIDKVAADGSIQDDYRIDYLRRHIIAMEEAVKDGVDVMGYTPWGCIDLVSASTGEMSKRYGFIYVDLDDKIQGTGQRIKKKSFDWYKGVIASNGQRL
>NZ_AP017373.1|WP_096369111.1|1557974_1559411_+|family-1-glycosylhydrolase
MSFKNDFLWGGAIAANQVEGAYNVGGKGLSVADMKTVGGKNKERHFTPVLDEETYYPSHRAIDFYHNYKEDIALFAEMGFKTFRLSINWSRIFPQGDETQPNEEGLLFYDRVFDECLKYGIEPLVTLSHFEIPLGLMEKYDGFLSRKTIDFYVNYAKVCFERYKDKVRYWITFNELNFGTMPHGELTVLGLHPHGDFALNAIPKDEHKRFQALHHTFIASAKAVIEGHKINPNFKIGCMIAHLTMYPLTPNPEDILQTKEYDLLVNKFVGDVQVKGKYPPLIETYFKNKKINIQKEVGDDALLQEGRVDMYTFSYYMTLCMTTQEGAEPSMGNLMGGAANPYLEASEYGWQIDATGLEYTLTDLYDRYEVPLFVVENGLGMEDKVEADGTINDDYRIDYFQKHIKAMSRAVEKGVDLLGYTPWGCIDLVSAGTGEMRKRYGFIYVDMDNDGKGTLKRSKKKSFDWYKEVIASNAENIL
>NZ_AP017373.1|WP_096369110.1|1556034_1557960_+|PTS-glucose-transporter-subunit-IIA
MGKYEALAKNIVANVGGKENILSLTNCITRLRFKLKDESLANTEVLKKMNGVVTVMQAGGQYQVVIGNHVPDVRADVDSVIGKLESDSSQTKAKGNIFDKFVEMISGIFQPILAPLAAAGMIKGLNAILSFALGASFQASSTYAVLNSMGDGLFLFLPIFIGYTAMKKFNGSPFVGMMIAAALVYPGFVDGSVTKTFAESGGLDFFGIPFSVPAAGYGSSVMPIIAITAFAAFLEQQLKKIIPDVVKLFLAPFFTALIAIPLGFLIIGPVMNIASDALGKGLLALQGFSPIIFGLVLGFTWQILVMFGLHWAIVPFAIISLAQGEPTALLIAASGASFAQTGAVGAVMLKTKDKRLRELAIPAFISGWFGVTEPAIYGITLPKKRPFWASCVVSGIIGAFAMGMGIKGYTMGGLGVFSFTTNISLDGDISGAVKMIILAIIAVIAGFVLTWILGFEDESSEEEQPKEATNNQTRILQAVGEEHITTPLEGKVLPLSEANDAAFAAGVMGKGAVIEPTIGEVYAPFDGQVMTVFPTKHAIGLISEQGTELLIHVGIDTVQLEGKYFESFVSQGQKIQKGELLLKFDMEAIEAAGFSTQVPIIVTNSSDFADIMVTDKTAIHKAEELLTGLVKTADDLVVQPV
>NZ_AP017373.1|WP_096369109.1|1555116_1555962_+|PRD-domain-containing-protein
MEIRKILNNNVVIAINSRNEEIILMGLGIGFKKKIGQAVEVDKIEKIFGLKASSDIQSFSEILNEIPSTIIELSMVTLSEVKVKFDKEVSDTTLVAFADHLHAALLRTEENISVKNFLLWDIKRFFPEEFKICLKALGKVKEQFGVELPEDEAGFLTMHIVNGTLGAGHEYAMQLTKLMEEILTTLKYTLKVTFDEQDIYFQRFVTHLKFFTERILSGSARVEETDKELFALIMRKYPVAYLGTRKVSEFLKQTRDYEVSESEQIYMTVHLARILEKIQEN
>NZ_AP017373.1|WP_096369108.1|1554430_1554922_+|hypothetical-protein
MIGIKKHKNTKLSNEVNGPIPQPVKKTISSGKASKVHRTIHGASITAAGVGALPIPIADALILVPIQLKMLKNIYKIYDVKFSDKFVVNFIRVTLIPYIGRSLATLIPGVGSVVNASIAAAITEAIGWSAAASLEKGIDITKDTEKFEGILTDTLKTLIQQKK
>NZ_AP017373.1|WP_017369131.1|1553328_1554225_+|fructose-bisphosphate-aldolase
MAIVSAEKFVQAARDNGYAIGGFNTNNLEWTQAILRAAEAKKTPVLIQTSMGAAKYMGGYKMCKLLIETLVESMGITVPVAIHLDHGHFDDALECIEVGYSSLMFDGSHLPIEENLKLAEEVITKAHAKGISVECEVGSIGGEEDGIVGEGELAPIEDAVAMAKLGVDFLAAGIGNIHGPYPENWKGLHIDHLTKLNEALVAAMGKNVPIVLHGGSGIPDDQIREAIANGVAKINVNTECQLAFAKATREFVVEFNANEAEYMKKKLFDPRKFLKPGFDAITASVEERIDVFGSANKA
>NZ_AP017373.1|WP_003133411.1|1551232_1553173_+|threonine--tRNA-ligase
MIKITFPDGAVKEFEAGISTLEIAKSISPGLAKKALAGKVNGKLIDVTRPIKEDATFEIVTPDHEDAFGLLRHSAAHLFAQAARRHFPNIHLGVGPAIENGFYYDTDNEEGQISNDDLEKIEAEMRRISKENFPSIRKEVTKEEAKEIFAGDPYKLELIEEHNEDEGGLTIYSQGEYTDLCRGPHVPSTGFIKFFKLLNVAGAYWRGNSDNAMMQRVYGTAWFNKEDLEENLRMREEAKERDHRKLGRELDLFFNEASLGAGTAYWLPDGATIRRTIQRFVEDREIAAGYLHVNTPNLMNLDIYKQSGHWQHYHEDMFPPMDMGDGEQMELRPMNCPSHIAIYKHHVHSYRELPIRIAEFGTMHRYEKSGALSGLQRVRVMQLNDGHTFVTPDQIQEEFGKILELIMEMYRDFGIDDYSFRLSYRDPEDTEKYFPDDAMWEKSQRMLKATMDDMNLDYVEAEGEAAFYGPKLDIQVKTALGNEETLSTIQLDFLNPENFDITYVGADGEKHRPVMIHRGVISTLERFTAYLIELYKGAFPTWLAPTQAIIIPVNNEIHADYAWEIKKRLQEKGLRIVVDESNEKMGYKIRQAQTRKVPYQIVVGDQEMADGTVNIRRYGSTDTEVISLDQFIENIQEDVANYSRTK
>NZ_AP017373.1|WP_096369107.1|1549922_1550870_+|ferrochelatase
MKKRGILLVNLGTPENTSPQALRKYLKKFLSDRRVIKTHPLLWQPFLNGVILNTRPKKSAKLYEKIVKDGEFPLLTYTAAQEKNLQEICPDVEVAMGMSYSEPSIESSLESLLSKGVEELTVLPMYPQYSGTTVGSVFDSVMNFFLKKDHIVDLKFIRSFYKEPLYIKYFADKIKETLANEEDIEAVVFSYHGIPLSYVTDGDTYPEECTGTTRLIMEELGDFPHYQTYQSKFGPAEWLTPATDDTLKKLPGQGIKKILIVAPGFVVDCLETIEELEEENKEYFLENGGEKYVYVSPFNEDMAFAELVKEIAEKK
>NZ_AP017373.1|WP_003133409.1|1542406_1542724_+|ribonucleotide-reductase
MEAKLLNKVVIKRNGRVVDWDSFRIQTAVFKAAINGKYKDKPLHANMIANNVAKVVEKVIAEIPFDKIEIDTIQNQVVNQLNDFDKEVAKDFLEYKVKQEINRKH
>NZ_AP017373.1|WP_096369115.1|1563543_1564632_+|DUF4097-domain-containing-protein
MNKKDRIMDLMRRGIITEDEALELLDKSNPLAEEGQSENKEKFNYTDTEGFVNHDVDFMDSFKGIMDQIVSKGKVVFKDASKAIDDNIDFSKGFPKVKSTVKTVEKDIEGDFHSVNLDIKAGKISVHPGDNAHVKAEYRIYGAVDQEKIDEYLAEKTKLEVNDGVLEITTSDSLRTAVNLELYLPEKVYETFDFKFAHGDIKVEKVAVDNLEIDQVNGEVELVETTNKDINVTIKNGEIKVLDGSTNVLNLNSVNGNIRVTSAFEDGNVNLVNGNILLTQNQDTPRKLMVKNVNGDVKLSVPEYLGLVGHVRTVFGGYKTRLNLDNPFEASRNGAAVVRTGPDTLTFELETKSGTIWLKDID
>NZ_AP017373.1|WP_017369124.1|1564669_1564870_+|PspC-domain-containing-protein
MSKRQLTKSSSNRMLTGTIAGVGEYFGLSRDIITLMRILYVFFALGSFGTLALVYIVASWLIPSPH
>NZ_AP017373.1|WP_017369123.1|1564904_1565264_+|PspC-domain-containing-protein
MSQKQLTKSPNNRMLTGTIAGICEYFGWSPDIITFVRILYVLLAFGSWGSLIPVYFIASWIIPSAGGNAGRQNYRRTNEENWSSYADRWQSKSSSHSSGRKMKEAEPVEDEKKDDWSDF
>NZ_AP017373.1|WP_096369116.1|1565331_1566081_-|biotin--[acetyl-CoA-carboxylase]-ligase
MKNPLDKKIILDANPWLKDVKILQESISTQLDAKADGQANTLYMSEKQTGIYGRFGREYYASPEGGIYMTLLLKPAGSLENLPNYTLLAAAAVVSAIETLTAKKVDIKWVNDIYLNNKKIVGILAEAQVQPDTSLQVALGIGINFHISTFPEAIVQKAGSLFTEIPTITRSELVAKIWSEFHRLSKGDFFEIYKSHSFILGKRVEFEENRVLYTGIAVDLTSSGQLIVHLEDGQIKTLSSGEVSLKNWT
>NZ_AP017373.1|WP_096369117.1|1566226_1567420_+|methionine-adenosyltransferase
MSEKRLFTSESVSEGHPDKVADQISDAILDAIVAQDPDAHVACETVVYTGTVNVFGEISTSAYVDIAGVVRETIKNIGYTDSENGFDYKSVGVHVSLVEQSPDIAQGVNEAEEVRGKDGKIIDPLDLIGAGDQGMMFGYATNETEEYMPLAISLSHKLVKKLADLRKSGAISYLRPDAKSQVTVEYDEAGQVKRVDTVVISTQHAAEATNEEIRRDVIEKVIKEVIPENLLDDETKYFINPTGRFVIGGPQGDSGLTGRKIIVDTYGGYAPHGGGAFSGKDATKVDRSASYAARYVAKNIVAAGLADKAQVQLSYAIGVATPTSVNIETFGTGKVSDDILLAAIRENFDLRPAGIIEMLDLLRPIYGQTAAYGHFGRTDIDLPWERLDKVEILKELL
>NZ_AP017373.1|WP_096369118.1|1567706_1569323_+|ribonuclease-Y
MNVISLVLLVLLIVLVIAFIFYAQNIKKNKQDAESLFMQAENKANEITANAQRDAALVRKEAEILRDEAEAFKKEARFNLREEEQKQRREIEDEFKQDRKELKETEQRLKQREEVLDRKDDKLTNKERSLDSKEETLSKKTDTLNKREQELLEIEEKKQEELERIAALTKEEAKEIILSETRDGLTKEMAQLIRSSEEKAHAEADKRAKNIVSLAIQRVSSDSVAEQTVSVVTLPDDGMKGRIIGREGRNIRTFEALTGIDVIIDDTPEAVVLSGFDPIRREIARMTLEQLVQDGRIHPARIEELVEKNRKALDHKMREYGEQAAFEVGAHNLHPDLMKIMGRLHFRTSYGQNVLDHSVEVANVAGNLAGEMGENVTLAKRAGFLHDIGKALDHEVEGSHVEIGTELARKYKENPIVINTIASHHGDTEPNSNIATLVAAADALSAARPGARRESIENYIKRLRDLENISTSFDGVESAFALQAGREVRVMVKPEKLTDDQIVILARDVKNRIEDEMDYPGNIKVTVIRETRAIDYAK
>NZ_AP017373.1|WP_017369120.1|1569477_1570107_+|guanylate-kinase
MPERGLLIVFSGPSGVGKGTVRAKIFENENNFDYSVSMTTRAQRPGEVDGKDYYFRTREEFEEMIRKGEMLEYAEYVGNYYGTPLTYVNQTLDEGKDVFLEIEVQGALQVKEKVPDGVFVFLTPPDLEELRGRLVGRGTDSAEVINNRMMKAKEEIRLMSEYDYAVVNDKVELAAERVIKIIEAEHYRVDRVMERYAHMIEKLDEDGKN
>NZ_AP017373.1|WP_096369119.1|1570220_1570577_+|DNA-directed-RNA-polymerase-subunit-omega
MMLEPSIDKLLQNVDSKYSLVVLEAKRAHELRDGERPTMEFKSVKRTLQALEEIAEGTVTIHPSPDAKRETLKEKRELERLQQKMAEKLIREQIAKEEAEEEAKQKGNRAAKAAAAAE
>NZ_AP017373.1|WP_096369120.1|1570723_1573051_+|primosomal-protein-N'
MFKKTARIIVDVPLMQTDKPFSYAIPTELQEMIEPGMRVHVPFGKGNRLVQGIVIEAGDHEEENLKEIAELLDLEPVLTKEQLCLADEMRHTVFSYKISCLKAMLPNLLNSSYDKILTNQEGIKTKWSVLEESQKVQALKDIKAGKLAVSYSAKSKENKKIEKYLKANAKLTTFEIGKAAKKRAELKDYLLNQEASVRQKDLPFSSTVIKYFIENELVEVTEKEVSRTSSVFEAVVPDQAKVLNHEQQLAFDAIVSSADKPFLLEGITGSGKTEIYLQVIEHFLEKGQSAIMLVPEISLTPQMSNRFIARFGKKVAIMHSGLSDGEKYDEWRKIKEGRAQVVVGARSAIFAPLENIGVIIIDEEHETSYKQDSSPRYHARDIALLRAQYHHARLVLGSATPSLESRARAQRNVYHLLTLTHRANDQALLPEVKIVDMRNNLSDKSANFSDALLQKIREKIERNEQVILMLNRRGYSSFVMCRDCGFVVECPNCDISLTLHMDTKTLNCHYCGHQEGIPQVCPSCQSRKIRYYGSGTQKVQEELEKLLPEIRILRMDVDTTKTKNAHEKILKKFGNHEADVLLGTQMIAKGLDFPNVTLVGVINADTGLNLPDFRASERSFQLLMQVAGRAGRADKKGEVIIQTFNPGHYAVKLVADQDYEAFYRQEMYYRQQLSYPPYYFTVQILVSHKDEDAVAKKAYEIASIIKANLSEKAKILGPTPKPIARTHNLYHYQILVKYRFEEQLEEVLNQVLDLTQKRENKDVRVLIDSEPQNFV
>NZ_AP017373.1|WP_017369117.1|1573297_1573954_+|deoxynucleoside-kinase
MAVLVLAGTIGAGKSSLTEMLAEDLGTEAFYESVDDNEVLPLFYQNPQKYAFLLQIYFLNKRFDSIKRALSHNNNVLDRSIYEDSLLFHLNADLGRATDIEVEVYDALLENMLEEINTITFKKRPDLLIHVSVSFEKMLERIQKRGREFEQLEYDSSLYDYYQELNKRYEKWFEDFDICPKIQIDGDKYDFVEDEKAKLFVLKQIKDKLAEIEEENSK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

38972 : 49266

Prochlorococcus_phage(28.57%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096368136.1\|38972_39812_+	thymidylate synthase	A0A249XZR6	Enterococcus_phage	2.8e-86	58.9
WP_096368137.1\|39813_40275_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_096368138.1\|40291_40717_+	ASCH domain-containing protein	NA	NA	NA	NA
WP_096368139.1\|40821_41538_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A1D7SEW9	Cyanophage	6.3e-47	45.0
WP_096369356.1\|41594_41837_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_096368140.1\|41836_42517_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_096368141.1\|42513_44730_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.6e-157	42.6
WP_096368142.1\|44714_46130_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	4.7e-54	32.3
WP_096368143.1\|46122_47136_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.8e-60	42.6
WP_096368144.1\|47132_47675_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	8.2e-15	33.0
WP_096368145.1\|47715_49266_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	6.9e-75	46.8

DBSCAN-SWA_2

512106 : 521743

Bacillus_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096368454.1\|512106_514590_-	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	8.5e-99	33.5
WP_019292489.1\|514635_515097_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_096368455.1\|515099_515942_-	3'-5' exonuclease	A0A0K2SUJ2	Clostridium_phage	1.2e-20	34.9
WP_096368456.1\|515965_517903_-	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	1.4e-125	43.1
WP_096368457.1\|518142_518781_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_016170892.1\|518888_519107_+	glutaredoxin-like protein NrdH	C3U2K9	Lactococcus_phage	1.5e-12	45.1
WP_096368458.1\|519103_519523_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A1YTS5	Staphylococcus_phage	2.8e-07	28.7
WP_096368459.1\|519574_521743_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	1.5e-248	59.0

DBSCAN-SWA_3

639534 : 647630

Streptococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096368536.1\|639534_641568_-	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	3.4e-106	37.5
WP_096368537.1\|641581_641905_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_096368538.1\|642046_643342_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	5.9e-19	32.8
WP_096368539.1\|643453_644143_-	type I 3-dehydroquinate dehydratase	W6LP76	Streptococcus_phage	1.2e-50	48.5
WP_003135419.1\|644506_644707_-	cold-shock protein	A0A1X9IGI9	Lactococcus_phage	5.5e-25	83.3
WP_017368974.1\|644911_645907_-	catabolite control protein A	C6ZCU4	Enterobacteria_phage	1.1e-20	28.2
WP_096368540.1\|646109_647195_+	aminopeptidase P family protein	NA	NA	NA	NA
WP_096368541.1\|647237_647630_-	arsenate reductase ArsC	A0A2H4PQT9	Staphylococcus_phage	1.6e-12	36.4

DBSCAN-SWA_4

652965 : 665627

Mycobacterium_phage(12.5%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096368544.1\|652965_655329_-	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	2.1e-83	49.9
WP_004258727.1\|655456_655882_-	universal stress protein	NA	NA	NA	NA
WP_096368545.1\|655999_656782_-	ankyrin repeat domain-containing protein	Q70HB9	Fowlpox_virus	2.0e-06	28.8
WP_096368546.1\|656923_657709_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_096368547.1\|657763_658273_-	QueT transporter family protein	E7DN70	Pneumococcus_phage	4.1e-08	30.5
WP_017368960.1\|658440_659160_-	3-oxoacyl-ACP reductase	A0A0N9R355	Chrysochromulina_ericina_virus	2.1e-13	26.9
WP_096368548.1\|659152_659392_-	DUF2829 domain-containing protein	A8AT88	Listeria_phage	5.6e-08	35.9
WP_096368549.1\|659522_660368_+	SDR family NAD(P)-dependent oxidoreductase	A0A0K0KVL6	Prochlorococcus_phage	5.4e-05	28.1
WP_096368550.1\|660402_662391_-\|tRNA	methionine--tRNA ligase	A0A1V0S905	Catovirus	1.5e-58	32.3
WP_096368551.1\|662728_664426_-	hypothetical protein	NA	NA	NA	NA
WP_096368552.1\|664766_665627_+	exodeoxyribonuclease III	M1PSC0	Streptococcus_phage	2.1e-89	60.3

DBSCAN-SWA_5

861647 : 871295

Streptococcus_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_017369393.1\|861647_862298_+	Holliday junction resolvase RecU	R9TMF8	Paenibacillus_phage	2.6e-23	35.5
WP_096368674.1\|862329_864414_+	penicillin-binding protein	NA	NA	NA	NA
WP_096368675.1\|864417_865044_+	MBL fold metallo-hydrolase	A0A1X9I5D3	Streptococcus_phage	1.2e-49	46.9
WP_096368676.1\|865142_866069_-	LysM peptidoglycan-binding domain-containing protein	Q5ILA5	Bacillus_phage	6.7e-09	34.0
WP_096368677.1\|866251_867172_+	cysteine synthase A	A0A1X9I5F1	Streptococcus_phage	1.6e-111	68.4
WP_096368678.1\|867283_868456_-	cysteine desulfurase	H7BUW1	unidentified_phage	5.3e-19	31.7
WP_003133973.1\|868674_868950_-	HU family DNA-binding protein	A7KV42	Bacillus_phage	5.4e-23	68.5
WP_096368679.1\|869067_869652_-	YpmS family protein	NA	NA	NA	NA
WP_096368680.1\|869641_870472_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_096368681.1\|870458_871295_-	DegV family protein	A0A0N9SI50	Staphylococcus_phage	4.4e-15	39.1

DBSCAN-SWA_6

916290 : 926036

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096368709.1\|916290_917157_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	1.5e-103	66.6
WP_016171014.1\|917153_917495_-	DNA replication initiation control protein YabA	M1PFV3	Streptococcus_phage	1.7e-13	38.9
WP_096368710.1\|917519_918293_-	stage 0 sporulation family protein	NA	NA	NA	NA
WP_096368711.1\|918305_919169_-	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	1.5e-66	45.9
WP_096368712.1\|919195_919825_-	dTMP kinase	M1PSC7	Streptococcus_phage	3.8e-72	64.6
WP_003133894.1\|920035_920737_+	response regulator transcription factor	W8CYM9	Bacillus_phage	8.1e-39	38.8
WP_096368713.1\|920729_922148_+	cell wall metabolism sensor histidine kinase WalK	W8CYF6	Bacillus_phage	2.8e-30	32.0
WP_017369447.1\|922144_922957_+	MBL fold metallo-hydrolase	A0A2H4J3R0	uncultured_Caudovirales_phage	2.2e-32	37.8
WP_096368714.1\|923007_924633_-	chaperonin GroEL	A0A219YK78	uncultured_virus	8.1e-159	58.0
WP_096368715.1\|924661_924943_-	co-chaperone GroES	A0A221S386	uncultured_virus	5.5e-15	48.9
WP_096368716.1\|925058_925589_-	ClbS/DfsB family four-helix bundle protein	NA	NA	NA	NA
WP_096368717.1\|925646_926036_-	single-stranded DNA-binding protein	A0A1X9I6R5	Streptococcus_phage	9.0e-24	42.7

DBSCAN-SWA_7

1176802 : 1185450

Lactococcus_phage(100.0%)

terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096368877.1\|1176802_1177354_-	hypothetical protein	Q9AZJ8	Lactococcus_phage	7.9e-74	66.3
WP_096368878.1\|1177365_1177749_-	helix-turn-helix transcriptional regulator	Q9AZJ7	Lactococcus_phage	3.8e-43	66.1
WP_019292609.1\|1178016_1178223_+	XRE family transcriptional regulator	NA	NA	NA	NA
WP_096368879.1\|1178265_1178526_+	hypothetical protein	Q9AZJ5	Lactococcus_phage	6.7e-07	36.5
WP_096368880.1\|1178629_1178923_+	hypothetical protein	NA	NA	NA	NA
WP_096368881.1\|1178922_1179105_+	DUF1655 domain-containing protein	Q9AZH6	Lactococcus_phage	1.3e-17	73.6
WP_096368882.1\|1179101_1179389_+	hypothetical protein	A0A1P8BMH2	Lactococcus_phage	5.8e-20	59.3
WP_185767489.1\|1179527_1179680_+	hypothetical protein	NA	NA	NA	NA
WP_096368883.1\|1179676_1179946_+	hypothetical protein	Q9AZH3	Lactococcus_phage	1.8e-15	50.6
WP_096368884.1\|1180034_1180364_+	hypothetical protein	Q9AZI7	Lactococcus_phage	1.4e-30	63.8
WP_096368885.1\|1180360_1181152_+	bifunctional DNA primase/polymerase	Q9AZI6	Lactococcus_phage	2.9e-101	65.7
WP_096368886.1\|1181160_1182798_+	DNA primase	Q9AZI5	Lactococcus_phage	2.6e-258	79.7
WP_096368887.1\|1183127_1183595_+	hypothetical protein	NA	NA	NA	NA
WP_096368889.1\|1183857_1184295_+\|terminase	terminase small subunit	Q9AZI3	Lactococcus_phage	8.5e-47	79.7
WP_096368890.1\|1184358_1185450_+	hypothetical protein	Q9AZI4	Lactococcus_phage	1.7e-19	37.2

DBSCAN-SWA_8

1341578 : 1409202

Lactococcus_phage(43.48%)

head,bacteriocin,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096368981.1\|1341578_1342826_+\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_096368982.1\|1342852_1344703_+\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_096368983.1\|1345086_1349970_+	PolC-type DNA polymerase III	A0A0K2SUJ2	Clostridium_phage	6.5e-18	35.1
WP_096368984.1\|1356404_1356890_+	competence protein	NA	NA	NA	NA
WP_096368985.1\|1356982_1358179_+	phosphoglycerate kinase	NA	NA	NA	NA
WP_096368986.1\|1358226_1359396_+	class I SAM-dependent rRNA methyltransferase	W6LLI2	Streptococcus_phage	3.6e-108	50.1
WP_096368987.1\|1359611_1360403_+	hypothetical protein	NA	NA	NA	NA
WP_185767491.1\|1360442_1361477_-	YdcF family protein	NA	NA	NA	NA
WP_096368988.1\|1361779_1363048_-	NAD(P)/FAD-dependent oxidoreductase	A0A2H4PQX1	Staphylococcus_phage	3.5e-24	54.5
WP_096368989.1\|1363144_1364647_-	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA
WP_096368990.1\|1364639_1365482_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	6.7e-24	32.5
WP_096368991.1\|1365580_1366594_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_017369688.1\|1366590_1366740_-	hypothetical protein	NA	NA	NA	NA
WP_003133193.1\|1366754_1367234_-	S-ribosylhomocysteine lyase	NA	NA	NA	NA
WP_096368992.1\|1367354_1368200_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	2.9e-59	45.2
WP_096368993.1\|1368377_1369472_+	alanine dehydrogenase	NA	NA	NA	NA
WP_017369685.1\|1369496_1370504_+	bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA	NA	NA	NA
WP_096368994.1\|1370730_1371921_+	glycine C-acetyltransferase	V5LQ39	Emiliania_huxleyi_virus	2.3e-46	31.9
WP_019291514.1\|1371987_1372941_+	L-threonine 3-dehydrogenase	NA	NA	NA	NA
WP_096368995.1\|1373088_1374450_+	amino acid permease	NA	NA	NA	NA
WP_096368996.1\|1375922_1376330_-	hypothetical protein	NA	NA	NA	NA
WP_096368997.1\|1376610_1376775_-\|bacteriocin	bacteriocin	Q9AZK6	Lactococcus_phage	5.0e-08	58.0
WP_096368998.1\|1377509_1378292_-	Abi family protein	NA	NA	NA	NA
WP_046400880.1\|1378349_1378661_-\|bacteriocin	bacteriocin immunity protein	Q9AZK7	Lactococcus_phage	5.2e-14	48.2
WP_003133238.1\|1378682_1378919_-	hypothetical protein	NA	NA	NA	NA
WP_014025431.1\|1378984_1379275_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_003133234.1\|1379612_1379861_-	hypothetical protein	NA	NA	NA	NA
WP_096369386.1\|1380294_1380846_-	hypothetical protein	Q9AZJ8	Lactococcus_phage	8.8e-73	66.3
WP_017369682.1\|1383177_1383690_+	cysteine hydrolase	NA	NA	NA	NA
WP_096369387.1\|1383848_1386089_+	anaerobic ribonucleoside-triphosphate reductase	A0A0C5KKX3	Enterococcus_phage	5.9e-269	63.0
WP_096368999.1\|1386301_1387747_+	amino acid permease	NA	NA	NA	NA
WP_096369000.1\|1387938_1388538_+	anaerobic ribonucleoside-triphosphate reductase activating protein	A0A288TZV3	Enterococcus_phage	4.2e-52	56.5
WP_096369001.1\|1388534_1389029_+	DUF2325 domain-containing protein	NA	NA	NA	NA
WP_096369002.1\|1389095_1389929_+	energy-coupling factor ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	7.1e-18	29.5
WP_096369003.1\|1389925_1390771_+	energy-coupling factor transporter ATPase	G9BWD6	Planktothrix_phage	6.6e-19	33.2
WP_017369675.1\|1390772_1391576_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA
WP_096369388.1\|1394415_1395060_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	1.5e-18	32.6
WP_096369004.1\|1395597_1396953_+	amino acid permease	NA	NA	NA	NA
WP_003133217.1\|1397156_1397768_+	30S ribosomal protein S4	NA	NA	NA	NA
WP_096369005.1\|1398046_1398370_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_096369006.1\|1398731_1399244_-\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	1.4e-16	34.0
WP_035000265.1\|1399251_1399467_-	hypothetical protein	NA	NA	NA	NA
WP_003133222.1\|1399489_1399678_-	hypothetical protein	NA	NA	NA	NA
WP_096369007.1\|1399839_1400022_-	hypothetical protein	Q9AZF0	Lactococcus_phage	5.7e-05	50.0
WP_096369008.1\|1400078_1401152_-	hypothetical protein	Q9AZI4	Lactococcus_phage	4.0e-21	38.5
WP_017369664.1\|1401635_1403351_-	hypothetical protein	R9QPR8	Lactococcus_phage	3.6e-157	52.6
WP_096369009.1\|1403347_1403677_-	HTH domain-containing protein	Q9AZI7	Lactococcus_phage	2.0e-24	55.2
WP_016171065.1\|1403676_1403865_-	hypothetical protein	NA	NA	NA	NA
WP_003133227.1\|1404063_1404345_-	hypothetical protein	A0A1X9I5U9	Streptococcus_phage	5.9e-09	36.7
WP_014025432.1\|1404328_1404493_-	hypothetical protein	NA	NA	NA	NA
WP_016171063.1\|1404638_1404821_-	DUF1655 domain-containing protein	Q9AZH6	Lactococcus_phage	1.9e-16	71.7
WP_016171062.1\|1404820_1405114_-	hypothetical protein	NA	NA	NA	NA
WP_096369010.1\|1405186_1405885_-	hypothetical protein	NA	NA	NA	NA
WP_096369011.1\|1406426_1407128_+	helix-turn-helix domain-containing protein	R9QMZ5	Lactococcus_phage	1.1e-08	53.3
WP_096369012.1\|1407506_1408355_+	DUF3800 domain-containing protein	NA	NA	NA	NA
WP_040086209.1\|1408628_1408865_+	hypothetical protein	NA	NA	NA	NA
WP_040086207.1\|1408890_1409202_+\|bacteriocin	bacteriocin immunity protein	Q9AZK7	Lactococcus_phage	2.6e-13	45.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_AP017373

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection