CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_AP017631	Clostridium perfringens strain CBA7123 plasmid pCBA7123-01, complete sequence	1 crisprs	NA	0	1	4	0
NZ_AP017630	Clostridium perfringens strain CBA7123	4 crisprs	c2c9_V-U4,DEDDh,cas14j,cas2,csa3,cas3,WYL,cas4,cas1,cas6,cas8b2,cas7,cas5,DinG	0	15	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_AP017631_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP017631_1

37510-37604

Orphan

Consensus_repeat	Method
AAAAAGTTACTTTTAAGTAACTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP017631_1

>merge|NZ_AP017631|1|37510-37604|CRISPRCasFinder
CATAAGTCACTTAAAAGTAATTTTAAAGTGTTTAAAAAGTTACTTTTAAGTAACTTATACTATTATAATATCAAAAAGTTACCTAAAAGTCAACT

>NZ_AP017631|1|1|37510-37604|CRISPRCasFinder
CATAAGTCACTTAAAAGTAATTT	TAAAGTGTTTAAAAAGTTACTTTTAAGTAACTTATACTATTATAATATC
AAAAAGTTACCTAAAAGTCAACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP017631.1\|WP_015141743.1\|39595_39802_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238045
NZ_AP017631.1\|WP_011428905.1\|39898_40273_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|224511
NZ_AP017631.1\|WP_096517130.1\|30847_31582_+\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239737
NZ_AP017631.1\|WP_096517137.1\|42016_44929_+\|Cys-Gln-thioester-bond-forming-surface-protein	unknown	unknown	gnl\|CDD\|227268
NZ_AP017631.1\|WP_061416225.1\|34745_35276_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|273106
NZ_AP017631.1\|WP_096517138.1\|45144_45402_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017631.1\|WP_096517134.1\|37988_38801_+\|plasmid-replication-protein	unknown	unknown	unknown
NZ_AP017631.1\|WP_096517135.1\|40334_41435_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|349398
NZ_AP017631.1\|WP_003458893.1\|33662_33986_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|367559
NZ_AP017631.1\|WP_096517133.1\|35854_36352_+\|DNA-binding-protein	unknown	unknown	unknown
NZ_AP017631.1\|WP_003464348.1\|36380_36632_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017631.1\|WP_003458857.1\|33017_33659_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017631.1\|WP_003474956.1\|35561_35789_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017631.1\|WP_096517142.1\|39041_39437_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_AP017631.1\|WP_003453385.1\|36634_37480_-\|ParM/StbA-family-protein	unknown	unknown	gnl\|CDD\|212669
NZ_AP017631.1\|WP_096517136.1\|41502_41877_+\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	unknown	unknown	gnl\|CDD\|367091
NZ_AP017631.1\|WP_003458835.1\|34208_34679_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017631.1\|WP_096517140.1\|46051_46354_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017631.1\|WP_096517132.1\|32209_33007_+\|beta2-toxin	unknown	unknown	unknown
NZ_AP017631.1\|WP_096517139.1\|45411_46035_+\|class-D-sortase	unknown	unknown	gnl\|CDD\|320681

Protein	Function_ID	Function_description	E-value
NZ_AP017631.1\|WP_015141743.1\|39595_39802_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	5.56233e-07
NZ_AP017631.1\|WP_096517137.1\|42016_44929_+\|Cys-Gln-thioester-bond-forming-surface-protein	gnl\|CDD\|227268	COG4932, COG4932, Predicted outer membrane protein [Cell envelope biogenesis, outer membrane].	3.15605e-51
NZ_AP017631.1\|WP_096517135.1\|40334_41435_+\|hypothetical-protein	gnl\|CDD\|349398	cd05379, CAP_bacterial, Bacterial CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain proteins. Little is known about bacterial and archaeal members of the CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain family. The wider family of CAP domain containing proteins includes plant pathogenesis-related protein 1 (PR-1), cysteine-rich secretory proteins (CRISPs), and allergen 5 from vespid venom, among others. Studies of eukaryotic proteins show that CAP domains have several functions, including the binding of cholesterol, lipids and heparan sulfate. This group includes Borrelia burgdorferi outer surface protein BB0689, which does not bind to cholesterol, lipids, or heparan sulfate, and whose function is unknown.	8.4623e-23
NZ_AP017631.1\|WP_096517142.1\|39041_39437_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	7.91764e-16
NZ_AP017631.1\|WP_096517130.1\|30847_31582_+\|recombinase-family-protein	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	7.42399e-39
NZ_AP017631.1\|WP_003453385.1\|36634_37480_-\|ParM/StbA-family-protein	gnl\|CDD\|212669	cd10227, ParM_like, Plasmid segregation protein ParM and similar proteins. ParM is a plasmid-encoded bacterial homolog of actin, which polymerizes into filaments similar to F-actin, and plays a vital role in plasmid segregation. ParM filaments segregate plasmids paired at midcell into the individual daughter cells. This subfamily also contains Thermoplasma acidophilum Ta0583, an active ATPase at physiological temperatures, which has a propensity to form filaments.	8.65285e-44
NZ_AP017631.1\|WP_011428905.1\|39898_40273_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|224511	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription].	0.00092864
NZ_AP017631.1\|WP_061416225.1\|34745_35276_+\|transcriptional-regulator	gnl\|CDD\|273106	TIGR00498, LexA_repressor., SOS regulatory protein LexA. LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA. [DNA metabolism, DNA replication, recombination, and repair, Regulatory functions, DNA interactions].	1.62391e-16
NZ_AP017631.1\|WP_096517136.1\|41502_41877_+\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	gnl\|CDD\|367091	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system. PemK is a growth inhibitor in E. coli known to bind to the promoter region of the Pem operon, auto-regulating synthesis. This family represents the toxin molecule of a typical bacterial toxin-antitoxin system pairing. The family includes a number of different toxins, such as MazF, Kid, PemK, ChpA, ChpB and ChpAK.	3.06605e-23
NZ_AP017631.1\|WP_003458893.1\|33662_33986_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|367559	pfam03551, PadR, Transcriptional regulator PadR-like family. Members of this family are transcriptional regulators that appear to be related to the pfam01047 family. This family includes PadR, a protein that is involved in negative regulation of phenolic acid metabolism.	8.41323e-19
NZ_AP017631.1\|WP_096517139.1\|45411_46035_+\|class-D-sortase	gnl\|CDD\|320681	cd06166, Sortase_D_2, Sortase domain found in subfamily 2 of the class D family of sortases. Class D sortases are cysteine transpeptidases distributed in Gram-positive bacteria (mainly present in Firmicutes). They anchor surface proteins bearing a cell wall sorting signal to peptidoglycans of the bacterial cell wall envelope, which is responsible for spore formation under anaerobic conditions. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. The prototypical subfamily 2 of class D sortase from Clostridium perfringens (named Cp-SrtD) recognizes the LPQTGS signal motif for transpeptidation. Its catalytic activity is in a metal cation- and temperature- dependent manner. The presence of magnesium appears to enhance Cp-SrtD catalysis towards the LPQTGS signal motif.	2.47368e-43

>NZ_AP017631.1|WP_003453385.1|36634_37480_-|ParM/StbA-family-protein
MIIAVDLGNYNIKTCEGIIFESRYQEVEKEDFDTDLLELENKFYRMESGDFENEFNKAKKNFIPNLLYAISKSCDVDNIETDLVLGVPASNLGISEELKEKLLNKSFNFNLFEVTKNIKINKVATVAEGLSSFYTLPKEERAKDLVILDIGGRTWNICVSSGGKCIMKFTVPGGMIDLYSEIQEDYNKLGNNADVEEIIRLIKNDTIDASKAKERFVKDKLNKVRLKVPNFSTYKIWGAGGGSLDLQDALRENLGNINFVPDPLFSNVKGNKLIAEAKWGK
>NZ_AP017631.1|WP_003464348.1|36380_36632_-|hypothetical-protein
MANIERVNLRLNLDDPRDAAIWDLVKDKKNKKGTYIKFLIYNLIVGNEISITKNSDKNFANSDNDKNDISEDEFDDDINNEFG
>NZ_AP017631.1|WP_096517133.1|35854_36352_+|DNA-binding-protein
MKTAQEVANELDLTRTEVYNLLRKKRFSPLVKKNGGQVAISNELFKLLEEEIKNKRNNIKPQENKNIDIKQEDKSLEEKNTIVDVKTEENTDFTSTIEILQNQIKLKDNQITILNNVITNNLKRIKDLEEKNHEFKELHEEVNNLRMVIDSIQTKKKRKRLLGIF
>NZ_AP017631.1|WP_003474956.1|35561_35789_+|hypothetical-protein
MRLSEEDKKCIKILYRNGLNVKEIEKLLNNDFSKDAIQKHIYRHLNEFRNEHIINRALNKNKLKKEFKNIIKNNF
>NZ_AP017631.1|WP_061416225.1|34745_35276_+|transcriptional-regulator
MKKREQIYTFLIDFIKEKGYQPTVREIAHAVNLKSSSTVYKHLEMLEKDGLIKLGKREQRGRKRSIHIIDLNKKIKKNVSEETIKNLIKFSKKQVNTNNDIFSKKVTNDYIVAVDNIFPDDIIIVEKVNSLKKDSIGLLLFENRTFIKKIFSDYEKVYDTDPIVLGKIIGVYRDFF
>NZ_AP017631.1|WP_003458835.1|34208_34679_+|hypothetical-protein
MNLVKTRDDLEREAPRLKKEWIQKIDSIDNANRKYVLVFEDLVFEADNEQDITSRLIRDYIETDDRNMQLLFRIDFARALSMYSIMNGINVEVYNNGKKVRDNYAVSEDDPDYEKDYEIPDVILDVFDEFTLFKGLNELKYAKIYYKSDDGEYKLF
>NZ_AP017631.1|WP_003458893.1|33662_33986_-|helix-turn-helix-transcriptional-regulator
MDREILKGSLEIILLSLLKNKDMYGYEISKEIKNITENVLILGEGTLYPALKRLKEKNLIQDYFIETNSSKKKRKYYKITEAGLIELNLKLKDFYLISNLIENIKEE
>NZ_AP017631.1|WP_003458857.1|33017_33659_-|hypothetical-protein
MTLKRLLNKKLRKLDISSRELSELKLELLDTAEEMKKDFLNEGFSEKEANEKVINTLQIDELINSTKESYLKANLINTRILSSLFLGIYTIFILICISNTTNGGGYLSKGAYLPFKFLYNLFNSNKPLLDNVFVLDQLFILLLFIPFGILIPIVINKYNSLKPSLIIFLLFNVIISLLHFYSFNFDLTIFRIISSILGFYIIKILKIKRKNEA
>NZ_AP017631.1|WP_096517132.1|32209_33007_+|beta2-toxin
MKKLIVKSTMMLLFSCLLCLGIQLPNTVKANEMNKYQSVMVQYLEAFKNYDIDTIVDISKDSRAVTKEEYKNMLMEFKYDPNQKLKSYEITGSRKIDNGEIFSVKTEFLNGAIYNMEFTVSYIDNKLMVSNMNRISIVNEGKCIPTPSFRTQVCTWDDELSQYIGDAVSFTRSSKFQYSSNTITLNFRQYATSGSRSLKVKYSVVDHWMWGDDIRASQWVYGENPDYARQIKLYLGSGETFKNYRIKVENYTPASIKVFGEGYCY
>NZ_AP017631.1|WP_096517130.1|30847_31582_+|recombinase-family-protein
MRYKLTYVYGDSDQNFTQTFSSKVLMESYIETGKDKDLRVINIESSKLYGYARVSSKEQNLDRQIEALKEYGVNERDIITDKQSGKDFNREGYKTLKEQLLRSGDVLVIKELDRLGRNMAQIKEEWNDLQAKEINIVVIDTPILNTEGKSNLEKTLISNIVFELLSYMAEKERVKIKQRQAEGIANAKAKGKHLGRPRIEYPGNFKEVYDKWKAKEITGVKAMELMNLKKNSFYNLIKKYEIEK
>NZ_AP017631.1|WP_096517134.1|37988_38801_+|plasmid-replication-protein
MAYTHLLTKEQLEQEKRFNLEERDFHVLNQIEYKESRRKAQSILRFIRKGILLNNGSWSISFSKIHKDYNDWVNKNKKKRPELRNISLKQIKNIVNKLKDLGLLIIENVKKRNCYFLPLPNKLPNNENITIPDTTSIDSNQVTPRYIRNNNIDIDSNSNSKEFNADMYEKCTSLVDVRNKVKELLKAARVKSSWIKNKVLTKLSENYRNITVKFLESYINTVIENTRNTYYSNYRKYIKNNENNRVLPNFTERNYSEDYWKYLEENLCFN
>NZ_AP017631.1|WP_096517142.1|39041_39437_-|helix-turn-helix-transcriptional-regulator
MDNLSFFPNNLKTLRKLNLLSQAELSKLLGISRSSLSFYESGESEPTLNVLIKISKFFNVSLDYLIFKKIDSKFLANLISYDSLKKQNLDTLEKLDLLDIFKNKKNYYISKEQEIHKNIEDLNSIIKFLES
>NZ_AP017631.1|WP_015141743.1|39595_39802_+|helix-turn-helix-domain-containing-protein
MENKLSFLRKNKVLSQREVASLIGKEARFIHRLENGKVKNPTASEVYKLSRIYDTSMEEIYRAIVLNN
>NZ_AP017631.1|WP_011428905.1|39898_40273_+|helix-turn-helix-domain-containing-protein
MRGKGELNKNKVGSLYLDGFSGKEIAKILGAKEDTIYKCLNRNFSHLKEHNKAKRELKKLQDEEIRKITHRECKKYMSDRNFVKTNSSIYKHNGHGNFSVKKEEEIGCVVPFDVPKHFSFKKKF
>NZ_AP017631.1|WP_096517135.1|40334_41435_+|hypothetical-protein
MNKRIKAIIEFVKVHKKETIGVAVALGIAVVGVGGYAISKHYANTDTNNIALAEKKEDPKTDEDKKLEENKATDNEDVTVEEQEDGSLIVKDKDGNIIADSSKGDDVSKIVEEKKEAGSDVNIKNKKGEVEKVESVDNGTIKVANGETISSKTENKVQASQPSGEKVEKVEDVKGTTASSEGSITIVKPSKEESSSKPESKPQEQPEESKHEEAPQPSQKPEEKPQEKPVEKPQETKPVEPAKPQKPQRTWEYQIGMSQELWNDFNAYRQSKGLNALNWSGKYAGWTKSHCEEMAAKQRGFHKNYPEGGQIVLDGDAVKSASGFLNVFKNSPAHNKNMLDPDLTEGACAVYKDSNGAYYVVIGFDY
>NZ_AP017631.1|WP_096517136.1|41502_41877_+|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin
MGRVRKDFYKGEVYRGDIFYADLGDIESKVGSVQGGIRPVIVIQNDIGNRYGETFVVTSVTSQPKKEMPVHTKIIKECLEKPSTILLEQITTISRYQIREKIGKLNGYEIKELNRALGISIGLS
>NZ_AP017631.1|WP_096517137.1|42016_44929_+|Cys-Gln-thioester-bond-forming-surface-protein
MSKRKRFKLITTITLIFTFLLTNIKVFAVEINSTDAESYLNYDSPTWGKVLPIGNHRYYAPDLRTCYCLNTGALNPTGQDYTEEIPLDGGIETIIYWGYPARDGSQFGVTADEYRYCTQLAIWAYQKEAGLSRGLDRTRLQDGTGSLSRLKPVIDFLVEKGLNKELPTFFEVTPSNIVAHQEGDYFVSEPIKLKSDYTFSDAKVTIKSSSNPELKDIVKIKDMDGDERNTYNSNESFRVYIPIDAETGDIKIDAKATVDLPASLAYATPVEGKQDMSLVNVSPQAMNKDNVTVSWTGLNGAVQVIKKGDDGKLLTGAKFVLKSTDGSKIAETASENGKAVFNDIKPADYILEETEAPTGYLITNPVNVTVKPNKVSTVEMTDTQIKGKIQILKIDGETQKPLKGAEFEVKNTNGERVKTITTDENGIAETGVLPFAEYVIKEIKAPDKYTLNGKEYPVSITKHMETVKLTVANTKKNGSIEIVKKGDDGKLLEGAEFNLEDTNGKVIATQKSNKDGKVVFSDLKEGNYVIKEVNAPKGYNIVNPVNVEVKADEVTKLDLTDKATTGKLLIKKVDIATGKEVPGAKIKVTCTEGLDKGKSFEFVSTDKEQEFTLKAGKYEYVEIQAPKGYELNKEIGKFEITKEGQVVKCEVKDKATTGKLLIKKVDVATGKEVPGAKIKVTCTEGLDKGKSFEFVSTDKEQEFTLKAGKYEYVETQAPKGYELNKEVGKFEITKEGQVVKCEVKDKATTGKLLIKKVDVATGKEVPGAKIKVTCTEGLDKGKSFEFVSTDKEQEFDLKAGKYEFVETQAPKGYELNKEVGKFEITKEGQIVKCSVKDSKTTGKLIFKKVDSKTGEGLDGAEIKLVCTEGLDKGKEITFTSKKEGNELDLLAGKYVISELKAPEGYELTKETKEFTVNKQGEVVNCTLDNNKFEIVKTGSSFDVNALIPFGIILVAGGLGALILSKKRKLS
>NZ_AP017631.1|WP_096517138.1|45144_45402_+|hypothetical-protein
MSETLLCEIEKLDLEFSSLSNRKLNKKDLEYRKYLISKLQRLSKEYLRSCGIRNKYKLEKILRKYYFEYHIKIYFKFFNFNNIAV
>NZ_AP017631.1|WP_096517139.1|45411_46035_+|class-D-sortase
MMKKAFITLIIIGVSLIGTALFIDFKSKSIQDNLVQKYEEKMYSNSSVEYSYNPKINENMEKKEAIKDSFNQPKNKSKAEEKSNAIGILEIDSIGVKAPIVLGEENLDYVVAKYRTSSDFGELGNVILAAHNNMRGAIFRNLHKLKIGATVKIISDNKEFEYKITNRYIVEPNDTSKINFSNDKKEITLITCTNHAKQRLILTGELK
>NZ_AP017631.1|WP_096517140.1|46051_46354_+|hypothetical-protein
MYMNKNTRKIGEVRKKVETIREELEKDALFTAKTQESKERINVIITQDANDKIMDFMYDNAKVLKEQYGIQSRNKLLAAIIEFEADHIENIFEKLKRKEK

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_AP017631_1	1.1\|37533\|49\|NZ_AP017631\|CRISPRCasFinder	37533-37581	49	NZ_AP017631	Clostridium perfringens strain CBA7123 plasmid pCBA7123-01, complete sequence	37533-37581	0	1.0
NZ_AP017631_1	1.1\|37533\|49\|NZ_AP017631\|CRISPRCasFinder	37533-37581	49	NC_007773	Clostridium perfringens plasmid pCPF5603, complete sequence	13871-13919	2	0.959

1. spacer 1.1|37533|49|NZ_AP017631|CRISPRCasFinder matches to NZ_AP017631 (Clostridium perfringens strain CBA7123 plasmid pCBA7123-01, complete sequence) position: , mismatch: 0, identity: 1.0

taaagtgtttaaaaagttacttttaagtaacttatactattataatatc	CRISPR spacer
taaagtgtttaaaaagttacttttaagtaacttatactattataatatc	Protospacer
*************************************************

2. spacer 1.1|37533|49|NZ_AP017631|CRISPRCasFinder matches to NC_007773 (Clostridium perfringens plasmid pCPF5603, complete sequence) position: , mismatch: 2, identity: 0.959

taaagtgtttaaaaagttacttttaagtaacttatactattataatatc	CRISPR spacer
taaagtgtttaaaaagttacttttaagtgacttatattattataatatc	Protospacer
****************************.*******.************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 10000

Bacillus_phage(33.33%)

integrase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096517116.1\|789_1074_+	hypothetical protein	NA	NA	NA	NA
WP_096517117.1\|1074_1386_+	hypothetical protein	NA	NA	NA	NA
WP_096517118.1\|1761_2562_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_096517119.1\|2625_4215_+	DUF87 domain-containing protein	M4ZS25	Bacillus_phage	3.4e-16	29.4
WP_164792577.1\|4234_4399_+	hypothetical protein	NA	NA	NA	NA
WP_096517120.1\|4391_5471_+	conjugal transfer protein	NA	NA	NA	NA
WP_096517121.1\|5482_5818_+	TcpD	NA	NA	NA	NA
WP_096517122.1\|5829_6207_+	conjugal transfer protein	NA	NA	NA	NA
WP_096517123.1\|6252_6471_+	hypothetical protein	NA	NA	NA	NA
WP_096517124.1\|6472_8995_+	ATP-binding protein	A0A1S5SF64	Streptococcus_phage	6.4e-70	27.8
WP_096517125.1\|8995_10000_+	C40 family peptidase	A0A0A7RUS8	Clostridium_phage	1.4e-36	50.7

DBSCAN-SWA_2

15129 : 16149

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096517127.1\|15129_16149_+	DNA (cytosine-5-)-methyltransferase	A0A0E3DF50	Bacillus_phage	4.3e-57	39.6

DBSCAN-SWA_3

22334 : 31582

Streptococcus_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003474254.1\|22334_23192_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	E9P639	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	1.6e-17	30.3
WP_003479690.1\|24073_25336_+	tetracycline efflux MFS transporter TetA(P)	NA	NA	NA	NA
WP_003479689.1\|25319_27278_+	tetracycline resistance ribosomal protection protein TetB(P)	D0R0F5	Streptococcus_phage	1.6e-124	40.4
WP_003479687.1\|28198_29068_+	AraC family transcriptional regulator	D0R0F8	Streptococcus_phage	1.4e-27	28.7
WP_003479686.1\|29615_29768_+	zinc-ribbon domain-containing protein	NA	NA	NA	NA
WP_096517130.1\|30847_31582_+	recombinase family protein	Q1MVP4	Enterobacteria_phage	1.4e-17	39.5

DBSCAN-SWA_4

36380 : 41877

Clostridium_phage(80.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003464348.1\|36380_36632_-	hypothetical protein	Q0SPH5	Clostridium_phage	1.9e-11	51.9
WP_003453385.1\|36634_37480_-	ParM/StbA family protein	Q0SPH6	Clostridium_phage	7.5e-124	77.2
WP_096517134.1\|37988_38801_+	plasmid replication protein	Q0SPH7	Clostridium_phage	2.8e-67	54.2
WP_096517142.1\|39041_39437_-	helix-turn-helix transcriptional regulator	A0A0A8WJ60	Clostridium_phage	2.4e-08	43.8
WP_015141743.1\|39595_39802_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_011428905.1\|39898_40273_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_096517135.1\|40334_41435_+	hypothetical protein	NA	NA	NA	NA
WP_096517136.1\|41502_41877_+	type II toxin-antitoxin system PemK/MazF family toxin	A0A291I9M9	Lactobacillus_phage	4.5e-12	33.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_AP017630

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_AP017630_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP017630_1

63343-63432

Orphan

Consensus_repeat	Method
TTAAAATACAGCATTAAATCTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP017630_1

>merge|NZ_AP017630|1|63343-63432|CRISPRCasFinder
TTAAAATACAGCATTAAATCTTTATAACAGTAATTAAATAATATAAACATAATGGGAAATTAACCAGTTAAAATACAACATTAAATCTTT

>NZ_AP017630|1|1|63343-63432|CRISPRCasFinder
TTAAAATACAGCATTAAATCTTT	ATAACAGTAATTAAATAATATAAACATAATGGGAAATTAACCAG
TTAAAATACAACATTAAATCTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP017630.1\|WP_003450908.1\|65896_66079_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017630.1\|WP_003450981.1\|67224_67986_+\|tRNA-threonylcarbamoyladenosine-dehydratase	unknown	unknown	gnl\|CDD\|224100
NZ_AP017630.1\|WP_096514495.1\|57285_57789_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017630.1\|WP_096514501.1\|60504_62148_+\|DNA-polymerase-III-subunit-gamma/tau	unknown	unknown	gnl\|CDD\|235505
NZ_AP017630.1\|WP_096514497.1\|58227_59514_+\|branched-chain-amino-acid-transport-system-II-carrier-protein	unknown	unknown	gnl\|CDD\|283235
NZ_AP017630.1\|WP_096514507.1\|64346_65498_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017630.1\|WP_003458189.1\|62259_62598_+\|YbaB/EbfC-family-nucleoid-associated-protein	unknown	unknown	gnl\|CDD\|234669
NZ_AP017630.1\|WP_003450842.1\|63499_63778_+\|YaaL-family-protein	unknown	unknown	gnl\|CDD\|378478
NZ_AP017630.1\|WP_003458147.1\|70425_71109_+\|deoxynucleoside-kinase	unknown	unknown	gnl\|CDD\|238836
NZ_AP017630.1\|WP_096514509.1\|66151_66847_-\|5'-methylthioadenosine/adenosylhomocysteine-nucleosidase	unknown	unknown	gnl\|CDD\|180148
NZ_AP017630.1\|WP_096514491.1\|54739_55459_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274870
NZ_AP017630.1\|WP_096514503.1\|62695_63292_+\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|234616
NZ_AP017630.1\|WP_003458175.1\|68274_69441_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340891
NZ_AP017630.1\|WP_096514499.1\|59827_60313_-\|dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|238127
NZ_AP017630.1\|WP_096514493.1\|55724_56513_+\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|183527
NZ_AP017630.1\|WP_096514489.1\|53833_54727_+\|permease	unknown	unknown	gnl\|CDD\|223773
NZ_AP017630.1\|WP_003450880.1\|65648_65828_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017630.1\|WP_096514505.1\|63793_64072_+\|pro-sigmaK-processing-inhibitor-BofA-family-protein	unknown	unknown	gnl\|CDD\|163046
NZ_AP017630.1\|WP_096514487.1\|53246_53831_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|349766
NZ_AP017630.1\|WP_096514511.1\|69467_70406_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584

Protein	Function_ID	Function_description	E-value
NZ_AP017630.1\|WP_003450981.1\|67224_67986_+\|tRNA-threonylcarbamoyladenosine-dehydratase	gnl\|CDD\|224100	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism].	1.46601e-108
NZ_AP017630.1\|WP_096514509.1\|66151_66847_-\|5'-methylthioadenosine/adenosylhomocysteine-nucleosidase	gnl\|CDD\|180148	PRK05584, PRK05584, 5'-methylthioadenosine/adenosylhomocysteine nucleosidase.	1.15176e-121
NZ_AP017630.1\|WP_096514501.1\|60504_62148_+\|DNA-polymerase-III-subunit-gamma/tau	gnl\|CDD\|235505	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated.	0
NZ_AP017630.1\|WP_096514497.1\|58227_59514_+\|branched-chain-amino-acid-transport-system-II-carrier-protein	gnl\|CDD\|283235	pfam05525, Branch_AA_trans, Branched-chain amino acid transport protein. This family consists of several bacterial branched-chain amino acid transport proteins which are responsible for the transport of leucine, isoleucine and valine via proton motive force.	5.51968e-110
NZ_AP017630.1\|WP_003458189.1\|62259_62598_+\|YbaB/EbfC-family-nucleoid-associated-protein	gnl\|CDD\|234669	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein.	2.69687e-43
NZ_AP017630.1\|WP_003450842.1\|63499_63778_+\|YaaL-family-protein	gnl\|CDD\|378478	pfam10704, DUF2508, Protein of unknown function (DUF2508). This family is conserved in Firmicutes. Several members are annotated as being the protein YaaL. The function is not known.	2.45403e-10
NZ_AP017630.1\|WP_003458147.1\|70425_71109_+\|deoxynucleoside-kinase	gnl\|CDD\|238836	cd01673, dNK, Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.	5.17703e-63
NZ_AP017630.1\|WP_096514491.1\|54739_55459_+\|hypothetical-protein	gnl\|CDD\|274870	TIGR03943, TIGR03943, TIGR03943 family protein. Members of this occur in gene pairs with members of pfam03773. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region.	5.29166e-14
NZ_AP017630.1\|WP_096514503.1\|62695_63292_+\|recombination-protein-RecR	gnl\|CDD\|234616	PRK00076, recR, recombination protein RecR; Reviewed.	1.74859e-125
NZ_AP017630.1\|WP_003458175.1\|68274_69441_+\|MFS-transporter	gnl\|CDD\|340891	cd17333, MFS_FucP_MFSD4_like, Bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4, and similar proteins. This family is composed of bacterial L-fucose permease (FucP), eukaryotic Major facilitator superfamily domain-containing protein 4 (MFSD4) proteins, and similar proteins. L-fucose permease facilitates the uptake of L-fucose across the boundary membrane with the concomitant transport of protons into the cell; it can also transport L-galactose and D-arabinose. The MFSD4 subfamily consists of two vertebrate members: MFSD4A and MFSD4B. The function of MFSD4A is unknown. MFSD4B is more commonly know as Sodium-dependent glucose transporter 1 (NaGLT1), a primary fructose transporter in rat renal brush-border membranes that also facilitates sodium-independent urea uptake. The FucP/MFSD4 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.26094e-33
NZ_AP017630.1\|WP_096514499.1\|59827_60313_-\|dihydrofolate-reductase	gnl\|CDD\|238127	cd00209, DHFR, Dihydrofolate reductase (DHFR). Reduces 7,8-dihydrofolate to 5,6,7,8-tetrahydrofolate with NADPH as a cofactor. This is an essential step in the biosynthesis of deoxythymidine phosphate since 5,6,7,8-tetrahydrofolate is required to regenerate 5,10-methylenetetrahydrofolate which is then utilized by thymidylate synthase. Inhibition of DHFR interrupts thymidilate synthesis and DNA replication, inhibitors of DHFR (such as Methotrexate) are used in cancer chemotherapy. 5,6,7,8-tetrahydrofolate also is involved in glycine, serine, and threonine metabolism and aminoacyl-tRNA biosynthesis.	1.65157e-65
NZ_AP017630.1\|WP_096514493.1\|55724_56513_+\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|183527	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed.	6.50457e-113
NZ_AP017630.1\|WP_096514489.1\|53833_54727_+\|permease	gnl\|CDD\|223773	COG0701, COG0701, Predicted permeases [General function prediction only].	4.85676e-54
NZ_AP017630.1\|WP_096514505.1\|63793_64072_+\|pro-sigmaK-processing-inhibitor-BofA-family-protein	gnl\|CDD\|163046	TIGR02862, Sigma-K_factor-processing_regulatory_protein_BofA, pro-sigmaK processing inhibitor BofA. Members of this protein family are found only in endospore-forming bacteria, such as Bacillus subtilis and Clostridium tetani. Among such bacteria, it appears only Symbiobacterium thermophilum lacks a member of this family. The protein, designated BofA, is an integral membrane protein that regulates the proteolytic activation of the RNA polymerase sigma factor K. [Cellular processes, Sporulation and germination].	3.28227e-05
NZ_AP017630.1\|WP_096514487.1\|53246_53831_+\|hypothetical-protein	gnl\|CDD\|349766	cd03112, CobW-like, cobalamin synthesis protein CobW. The function of this protein family is unknown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterize it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.	1.35162e-15
NZ_AP017630.1\|WP_096514511.1\|69467_70406_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	2.93262e-32

>NZ_AP017630.1|WP_096514503.1|62695_63292_+|recombination-protein-RecR
MEFYPVAIEKLIEEFAKLPSIGKKSAQRLTLHILNLPKDEVEEFANALVKARGTIKYCSVCGNFTDTDPCAICSNPNREKDIICVVEQPKDIMTMEKVKEFNGLYHVLHGTISPMQGRGPQDIRIRELVARMSGDIKEVIVATNPTIEGEATAMYISKILKPLDVKVTRIAAGIPVGGDLEYADEVTLSKALEGRTVI
>NZ_AP017630.1|WP_003458189.1|62259_62598_+|YbaB/EbfC-family-nucleoid-associated-protein
MARGGFPGGMGNMNNLMKQAQMLQKQMQSMQEEIEASEFEGSAGGGAVVAKVNGKKELIALNIKPEVVDPDDVEMLEDLVFSAVKQALEKASEETSEKMGKLTGGMGMPGLF
>NZ_AP017630.1|WP_096514501.1|60504_62148_+|DNA-polymerase-III-subunit-gamma/tau
MAYKALYREWRPQTFNDVVGQEHITTTLKNQIINERTAHAYLFCGTRGTGKTSTAKVMAKALNCLDLKDGEPCNQCEMCKKINEGLAIDITELDAASNNGVDNIRDIIDDVQYPPQEARFKVYIMDEVHMLSIGAVNAFLKTLEEPPKNVVFILATTDPQKLPITILSRCQRFDFKRISRKDITGRLRKIVTEQGIFCDDKSLDLVARVSDGAMRDSLSILDQAISIGDGKVDYDELVSMLGLVTNDNLFKIVDSIIKRDIESAMEIIEELVLTGKDMTLFIKDLIVHYRNLLMIKVTSNPEEVLDTAEENIEKLKVQGAKLKVEEIMRCIRIVQECDEEAKLSKQARVYLELAVIKMCKIEYDTSKEVMLARINKLEQAIRSGNIQVNTNLEEVKSQVSNEAINKKVLNNKQQNAPQSSNNYEVVNENSTLTPEYLRKVWKDILETFKSRGKYMVYIALAKGISKVSCNKGVVEFRYTYEYRHNKERLEKHDFSKIVNDIFSEVLKEPVRVVYSVEQGTEEEKAEEADLEARLSGIMGDGLEIVEE
>NZ_AP017630.1|WP_096514499.1|59827_60313_-|dihydrofolate-reductase
MFSIIVAKSINNIIGANNKMPWNIPSDLKRFKELTMGKKILMGRKTFESLPFVLPGRTHLVLTTKKDFSYNHKDIIIYNDLDKLIEEYKDIKEEIFVIGGGKIYSELLKYTSKLYITEVLKEYKGDTYFPKVDYSEWIKTYESSIYEENCNKFKFFNYKKI
>NZ_AP017630.1|WP_096514497.1|58227_59514_+|branched-chain-amino-acid-transport-system-II-carrier-protein
MNKKKDILVIGFALFSIFFGAGNLIFPPYIGLTSGSEWLISFLGFIISDVGIIFLSIVAVSKAGSFQGVVGRAGKKFGITLEILMMLCLGPILVVPRTAATTFEMSISPLLGNVNPYVFSVIFFLIVFVLTIKPNKVMDIIGKVLTPLLLISLAVLIIKGIINPIGDLEKVNSGKLFMTGITQGYQTMDALGTGGIVALVMASFASKGYKDKKENRMLTIKSALIACIGLAIVYGGLTFLGATSSTLYDSSISQTTLLMNITNAILGSTGTIMLAIVIGLACLTTAVGLTSVTAKYFEDVSNKKLKYKYIVIAICVFSAVSSNLGVDKIIEIAVPVLSLIYPVSILLVVMNIFEKFVPNDVVVKGATYATLLISLLTVIDSLGIKFEFVHKLPLANLGFNWVVPAIVGGLIAGVVFRKREVVSLEESY
>NZ_AP017630.1|WP_096514495.1|57285_57789_+|hypothetical-protein
MRRKLLIGILWVALSFFILGCSTSGEKNITNNVREKNLEEKKHKDEEEYIDKISSTIVNMRVDGSIKNMRTISETGKLNNTIIEQLERSNNFFKCLIEDLKGVNVPEEFASYNEDIINNLNKAKSSLEVMKNSHDEETIKSNAKIFIESNKEVSNLVDKVLVYYAGC
>NZ_AP017630.1|WP_096514493.1|55724_56513_+|prolipoprotein-diacylglyceryl-transferase
MNPVAFSIGSFEVRWYGIIIALGILIAMTLVSINAKKNNLNFDVILDLFLWCFPFAIIGARAYYVLFELENYHSFWDMINIRQGGLAIHGGIIGAFLTAFIYCKVKKVDFLAYADIVAPAFILAQGIGRWGNFFNKEAHGGQVTSEFISKFPEFIQKGMYINGAYYHPTFLYESIWDIFVAIVLMIILYNITDRYKGVVISAYISLYSLGRFFIEGLRTDSLYFMNIRVAQLVSLLGIIIGIVAIIIIVSRGKKNRKGIFIN
>NZ_AP017630.1|WP_096514491.1|54739_55459_+|hypothetical-protein
MRKFNFSEFIWFLILFCFEYLIVKMFMSEKIFLIISRDMKAYVILAIILLLLLLVIQFFNIFKTSTRRNFKGGYLIFIFALVILNIANGLNINQVSLNLKGVKLYHDRHKESEHNHLHSDEKLNSNEALVFTEKNFHSSLEELILHLEDFVGKEISIEGLLYVSELYEKEEFAITQIDMTCCIADSVYLGVLCKGDLPDLKNGSEIKVKGLVESKKIKNSAGEEIEIPFINVFYTDTLQ
>NZ_AP017630.1|WP_096514489.1|53833_54727_+|permease
MEPLNKFSIVFSSIVIEALPFILIGAVLASFMQVYISNNIFNKIISKNKLLGSIQAGIIGVFLPVCECATVPITKGLLNKKVPLNVAITYMLAAPIVNPLVILSTYYAFDGNIKVVLLRVGVGFFIAVIAGLLMLCLSGENNIFIDNGEGELQGKCLCGCSEIDDNSSKPIRLLKHTSLEFYEIGKYFIVGATLASIFQTFVPRDIIFYFENSAVLSIIILMAFSFLISLCSEADAFVASTFMNRFSLGSITGFLIIGPMIDLKNTIMLFSIFKKSFVIKLLFVVFSLCFIASALIF
>NZ_AP017630.1|WP_096514487.1|53246_53831_+|hypothetical-protein
MKKCSVDLITGFLSSGKTSFINHILDDFSRDEVLVIQCEMGQEELINCRKNINIKKFSSMDELKEEDLIRSIKFYAPKRVFIECNGVSETKKFIDKVTNSKLKEYLKLGIIVNLIDMTTFNMFLKNIPSMIIPNISLSNLIVLNKCNEISENALKEYKDMIERFNNNAHIVNCIGKEGTNMNFNKERLINRMMG
>NZ_AP017630.1|WP_003450842.1|63499_63778_+|YaaL-family-protein
MDKKKISDYLIKKIDYSNQDEEILKAIEQTILEMEVARSAFQNACDDKLIESLIYKEQDINARYEYLIREAKKRGIKVSMEHIFKNARISII
>NZ_AP017630.1|WP_096514505.1|63793_64072_+|pro-sigmaK-processing-inhibitor-BofA-family-protein
MDIGTLSLDDIILLIVGVLVAILILRLIFGSIGKIIGLVINSVFGAILLMIVNYFGAYFGITIGINLLTALIAGILGIPGVILMILFQVFVR
>NZ_AP017630.1|WP_096514507.1|64346_65498_+|hypothetical-protein
MKSLFNNLVSSKYRSRGIRALIVLGIASFFLMGNYSMIRYFMQAGQENLDISIINKCFSMGSVDKFLLFLFLVWSVGFLFFNKENELKETLSKGEENIKKYFFSKVILIYGVSLIPIIINIFIKLIFYIPYRNVFSLDKLSISFLYFITLGLLFTSIIFTMNLIVKDRMFAGIFPIFFMEGLILIFSVSELLISDKLIWVRNSLGFIGDKVLLIFNLLNLDFEPNSFSLGIQLTFIIILASISALLIYLSSLLLKIMNVKSLDRPYFFEIPRYFIYIFMSILIGFIFVHAIGYLIIMFISSVSYVNGTFMVNIASLISMILLFAFLEILYRKKILNRDLVEDSGKVCNEIQPCMDDFIKFDENTGSLDNTKIFEKEEIFNNSL
>NZ_AP017630.1|WP_003450880.1|65648_65828_+|hypothetical-protein
MAVGTSINCKYCIDFKNDRCDGTEKNCLCRLCPRNLGQCICVKYCRETESVLFWNDEEE
>NZ_AP017630.1|WP_003450908.1|65896_66079_+|hypothetical-protein
MAISEEFIDIAENCVDYSARHREAVSSMNSCKSCLNCNEFHSGTCEKEMENKFNILQDMI
>NZ_AP017630.1|WP_096514509.1|66151_66847_-|5'-methylthioadenosine/adenosylhomocysteine-nucleosidase
MTLGIIAAMSEELEILLKDMEVKSKETKANMTFHQGTLWGQEVVAVVCGIGKVNAAVCTQILISEYKVNKVINVGVAGGIGMEIYPGDVVIANSLVQYDMDTSAFGDPIGQIPRLDTFDFKCSQELVDLCEEACKENEEIKSFTGRIVTGDQFVASVEKVKWLGEEFGASACEMEGGSIAHVCYLNNIPFVVIRSISDNANNGAHMDFAEFTAIGVKNSTSILKSMILKMA
>NZ_AP017630.1|WP_003450981.1|67224_67986_+|tRNA-threonylcarbamoyladenosine-dehydratase
MLQHSLSRTELLIGKDALDKLAKSKVMVFGVGGVGSFTVEALARAGVGNLILVDDDTVCLTNLNRQIHATYKTISKNKVEVMKERVLSVNRNCNVETIQVFVTPDNLEEIIPDDVDYVVDAIDTVSAKIALAVYCEQKGIKLMSSMGTGNKLNPAEFKVADIYNTKVCPLAKVMRYELRKRGVKKLKVVYSEEMPRKPKVEDVVTCKTGCVCTGGTKKCSAKRQIPGSVSFVPPVAGMIIASEVVKDLIKEYI
>NZ_AP017630.1|WP_003458175.1|68274_69441_+|MFS-transporter
MNSKKQNYVALAFLFIMMILAAIVENTKGIFIPVFKQEFGVNDNTISNLLISTSAAYMVLTFIGGMLCEKFGQKKVFLAGLMVIFLSLIFLSFTKNYLMLYTGMVISSAGIAMVAISCNTVLPILALTAQNVIMNVMHACYGLGSSVGQGLFGSLTARGVNWRTMYFFVGLVYLAVFICFIFVKIPRTEIVKEKDKMTIIEALSNKVIVAYMLALGLYVFTEQGISNWFVNYMKYGYNINEQKAGMYLSLFFAIFTIGRLFGGFVVEKRGYFNILYKTLIIGAALCILGLLLGRNGMVIISVSGLFFSITFPTTVLTISKVFDKNVAYITGIVITSASLVGMILNKAIGLLNESVGPDKAFYIIPASAILSAVLMFYLYLNTKKRLVK
>NZ_AP017630.1|WP_096514511.1|69467_70406_+|GNAT-family-N-acetyltransferase
MSFDKNVFIEAIRGNDREYVVKDKVGIILGRFFLKDLDSKNKKVDVKFKFYKEDNYKLMKETLRKILKVLFAEKDIYKINLFVSDIKNFNAYLDLGFMLEGILSDNVFNNGIQKDEYIMGININDFNDKVKLVQFQLNTERLALRNLTPENTEEMLDYYIRNEEHLRQYEPTRDSGFYTYEGQKEILTESFRQFIDGTSIDLGIFKDEKLIGKIKLSNIVYGILRNAFVGYSIDKEHQGKGYMKEALNTVCSYAFEEMGLHRLEASTLMDNSRSQGVLKACGFNELGISEKYLYINGEWRDHKIFYKVNDDL
>NZ_AP017630.1|WP_003458147.1|70425_71109_+|deoxynucleoside-kinase
MSLNTKNNLYREILDRIDRGGNWEMIVVDGVVGVGKSTLMNILAERGLIAYEEPVVDNPILEKFYYDRNRYSFPLQVFFLNKRFKHIKEAGLVENSVMDRSIYGDVIFAKMLCEKGEMTVEEFELYKELLENMLEHVKAPKLMVYLEISVDEAMKRIQKRGRDYEQVVEREYWEKLNNEYREYFENYNVSPILRINVDELDFENVPEDREYVLNLIDEKLSELENNK

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Click the colored protein region to show detailed information

Crispr_ID: NZ_AP017630_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP017630_2

1094522-1099454

Unclear

I-A

Consensus_repeat	Method
GTTTTATATTAACTATGAGGAATGTAAAT	CRISPRCasFinder
GTTTTATATTAACTATGAGGAATGTAAAT	CRT

75 spacers

cas5,cas7,cas8b2,cas6,cas2,cas1,cas4,WYL

The CRISPR arrays of NZ_AP017630_2

>merge|NZ_AP017630|2|1094522-1099454|CRISPRCasFinder,CRT
GTTTTATATTAACTATGAGGAATGTAAATAAATACAAGGATATACTTGACTATAAATTAGGGGACACGTTTTATATTAACTATGAGGAATGTAAATTTTTCTTTAATCTTTTAGTATTTTCACATGTTTTTAAGTTTTATATTAACTATGAGGAATGTAAATACTTAGATAAATAAGATTGACTTATCTTTATTTTTTGTTTTATATTAACTATGAGGAATGTAAATCATAATAGAATTGAATGATGACTTTGGTAAAGCTTTGGTTTTATATTAACTATGAGGAATGTAAATTTCAAACTAACTAAAACAATAAGTAAAAACTAAGTAGTTTTATATTAACTATGAGGAATGTAAATTTAAATAATCCTTTTGAAAATATATGGGACAAAATTGTTTTATATTAACTATGAGGAATGTAAATCAACTATAGGAATAGAAGGAATTAACTTAATTACTCGTTTTATATTAACTATGAGGAATGTAAATCCATAAGGTAAGGCACTTAATTATATCTCGCAAATAGTTTTATATTAACTATGAGGAATGTAAATTGGCTATGGGAGAAGATCAATTTGTCGATGATGATGTGTTTTATATTAACTATGAGGAATGTAAATTTAGGCATACTCTCTAAAACTTTAATTTCAGCACTAGTTTTATATTAACTATGAGGAATGTAAATTTTTTAAAGTCGTTGTTATAATTTAAGTACATTTTAGTTTTATATTAACTATGAGGAATGTAAATTTCTCATTTAGAAGATAACTCATGCAGATACCAAGTGTTTTATATTAACTATGAGGAATGTAAATTATGCAAAGCCAGCCCCAAACAATAATAATATTTGGTTTTATATTAACTATGAGGAATGTAAATAACTGAAATTGATAATTTCATAGTTCCAACTGATATTGTTTTATATTAACTATGAGGAATGTAAATTTATTATTTTTAGAATGGTGGATTTTCATCTTCATTGTTTTATATTAACTATGAGGAATGTAAATTAATTTGAACAACATCTAAATAAATTCCTAAATTATGTTTTATATTAACTATGAGGAATGTAAATGTTTATGATAGAGATAAATTCAAAACTAACGCTAGAGGTTTTATATTAACTATGAGGAATGTAAATACAGTTCAGATTTCAGGTTTAAAATTTGTTTCTAAAGTTTTATATTAACTATGAGGAATGTAAATTTAAATGAAAATAAAAGGAGATTGATTAAAATGAGTGTTTTATATTAACTATGAGGAATGTAAATAAATAAATAAAAACTTTAGACATAACAAGCAGACCACGTTTTATATTAACTATGAGGAATGTAAATTAAAATCACGAGTAGAAGGGAAATTAATAGTATATAGTTTTATATTAACTATGAGGAATGTAAATTTGTTCAACTTTTAAAACTATTCAAAGTGTAATGAGGTTTTATATTAACTATGAGGAATGTAAATATGGAAACAAAGAAAGATTTCCATAAGAAACAAGCTAGTTTTATATTAACTATGAGGAATGTAAATAATGTAAATATGCGTATGAAAGTTAAACCTCGAAAGGTTTTATATTAACTATGAGGAATGTAAATACAATAAAGAAATAACCTAAATTATTAGAATATTGTGTTTTATATTAACTATGAGGAATGTAAATGTTGAACTAAATAAATATTTCATTGAAAAGAATTCAGTTTTATATTAACTATGAGGAATGTAAATATAGGTAATAAAGTAGTTAAGTTTGAAGTAACAGCAGTTTTATATTAACTATGAGGAATGTAAATTTAGTAATATTAGTATTATTTGTATTACTTAAATATGTTTTATATTAACTATGAGGAATGTAAATAGATTACAACTTGAAAAAATTGAGTTACAAAAATAAGTTTTATATTAACTATGAGGAATGTAAATTATTTTCAAAATTCATGAAAACATTCCTCCTTCAAAGTTTTATATTAACTATGAGGAATGTAAATTTAATTAAATCAGCTCTATACTTAAAAGCATTATCAAGTTTTATATTAACTATGAGGAATGTAAATTAAGCTGTTTTTCTTATGTTTGCTTGTCTTTGTGTAGGTTTTATATTAACTATGAGGAATGTAAATCTAAATATTATAAAATCTTCGTCATTAACTCTTTCAAGTTTTATATTAACTATGAGGAATGTAAATACACTTTCTAATATGTCATTAGTTTCACACCCTGCAGTTTTATATTAACTATGAGGAATGTAAATATCTCCGTATCACCTGTCCCGTTATAAATCGGCTTAGTTTTATATTAACTATGAGGAATGTAAATCAGATTATATTTATTTGTTAGCATTCCATAATATTTGTTTTATATTAACTATGAGGAATGTAAATACTGTATTCTTGCTTATTATGTTTATCAACCTTACCGTTTTATATTAACTATGAGGAATGTAAATTAGTTAGTTCTTGTTATAGTTGCTTCTCTTTGTGTAGGTTTTATATTAACTATGAGGAATGTAAATTCTAAAAATATATGATTTTTAGTTATACTAAAAACTAGTTTTATATTAACTATGAGGAATGTAAATTAATTCGTAAATATATAAATTTTATCATTATACTTTGTTTTATATTAACTATGAGGAATGTAAATTGGTGATAAAAATGGGATTCTGTTCATTTATTTGCTTGTTTTATATTAACTATGAGGAATGTAAATAAGCTTTATCTCTCATAGGTTTAACAAAAGTTTCAAAGTTTTATATTAACTATGAGGAATGTAAATTTTTTTAGTTCTTTTTATTTTTATAAGCGTATCTAGTTTTATATTAACTATGAGGAATGTAAATATAATAACATCTAATTTATGAGTTAAATTATAATCTCGTTTTATATTAACTATGAGGAATGTAAATAACCTTATCCAAATCAGGAGTAAGAAACCAAGACCAACCAAGTTTTATATTAACTATGAGGAATGTAAATCCGTTAGGCTTTAGAGTTAAAGAAGGTGGTATTGAAAGTTTTATATTAACTATGAGGAATGTAAATCGATGATAAAAATGCAAGCTTAACTATAAGCCATAAGGTTTTATATTAACTATGAGGAATGTAAATTAGCCTGTCCAATTATTTAATTTTCTCATTTTTCTAGTTTTATATTAACTATGAGGAATGTAAATGTATTAGCATCATAATAAAATGTATTTTTCTTGCCAGTTTTATATTAACTATGAGGAATGTAAATGTTAGTGAATATCCAACTGCCTTTTGAACATAATTTGTTTTATATTAACTATGAGGAATGTAAATTAGCCTGAAACATTAAATCTGCTTGCTCATAATCATGTTTTATATTAACTATGATGAATGTAAATTTATCAACAGCTGAGGGGATGTATAAATATTGTTTAGTTTTATATTAACTATGAGGAATGTAAATATAGATATCTATTATTTTTAATAATAATTTTTCTTTGTTTTATATTAACTATGAGGAATGTAAATTGGTTAAATGAAGAATTAAATGAAATAATGAAATTAGTTTTATATTAACTATGAGGAATGTAAATCTATTTACAAGTCCAGTTCCTGCTGCAATAGTATTAGTTTTATATTAACTATGAGGAATGTAAATGTATATTGGACCGAGTGTTTGGAAGGTTGGAGCTTCGTTTTATATTAACTATGAGGAATGTAAATGGGGCAACTGTTATAGATGGTAGAAATATAAAAACTGTTTTATATTAACTATGAGGAATGTAAATATTGGATCATATTCCTCTAATATTTTTAATAACTCTGTTTTATATTAACTATGAGGAATGTAAATAATTCATTAAGCATAGAGTTCATATAAGTAGTAGTTGTTTTATATTAACTATGAGGAATGTAAATATAACCTTCATGCTTCTCTCTATGTTATTGCATTCAAGTTTTATATTAACTATGAGGAATGTAAATTTACAATAAATATCTTAGCAAGTAATTTTAAAAAATCGTTTTATATTAACTATGAGGAATGTAAATACAATAGAAGGAACATCATCAGGAACAGTACCACCAAGTTTTATATTAACTATGAGGAATGTAAATGAAACTTTATACCAATTTATCAAAGATACTTTCTTTGTTTTATATTAACTATGAGGAATGTAAATATGTTCCAGTTGGTAGAAAAAGAGAAATTGAAGAGAGTTTTATATTAACTATGAGGAATGTAAATTTTTTAACTGAGGTTGAGAGAGTAAAGAAAAGTTGTAGTTTTATATTAACTATGAGGAATGTAAATTAAAATGGCTATTATTCTGCGTAAAATACAGTTTTTGTTTTATATTAACTATGAGGAATGTAAATTAACATCTTTTATCACTATCTTTAACATAATTTGTTAGTTTTATATTAACTATGAGGAATGTAAATTAGCCGGGAAGTCCGAAGAATCCAAATATACCATACGTTTTATATTAACTATGAGGAATGTAAATTACCCATAGACATAGCTATAGCTGTGAACAAACATGTTTTATATTAACTATGAGGAATGTAAATTAGCCGGGAAGTCCGAAGAATCCAAATATACCATACGTTTTATATTAACTATGAGGAATGTAAATTTACCTTCTAAGAATCTATAATCATCTAATAAGTTGGTTTTATATTAACTATGAGGAATGTAAATGTTAATTCTATTATTCTATTTAACTCATTTAATATCGGTTTTATATTAACTATGAGGAATGTAAATAAAACTTGGTTAGATGAAACTAATAATTTTCCTAAAGTTTTATATTAACTATGAGGAATGTAAATATTATAATTTTAATAAAAGATGTTTTAAATAGAGAAGGTTTTATATTAACTATGAGAAATGTAAATTCATCTGATAAAACTCTTAAAATAATATATTGATTACGTTTTATATTAATTATGATGGGTGTAAAA

>NZ_AP017630|2|2|1094522-1099454|CRISPRCasFinder
GTTTTATATTAACTATGAGGAATGTAAAT	AAATACAAGGATATACTTGACTATAAATTAGGGGACAC
GTTTTATATTAACTATGAGGAATGTAAAT	TTTTCTTTAATCTTTTAGTATTTTCACATGTTTTTAA
GTTTTATATTAACTATGAGGAATGTAAAT	ACTTAGATAAATAAGATTGACTTATCTTTATTTTTT
GTTTTATATTAACTATGAGGAATGTAAAT	CATAATAGAATTGAATGATGACTTTGGTAAAGCTTTG
GTTTTATATTAACTATGAGGAATGTAAAT	TTCAAACTAACTAAAACAATAAGTAAAAACTAAGTA
GTTTTATATTAACTATGAGGAATGTAAAT	TTAAATAATCCTTTTGAAAATATATGGGACAAAATT
GTTTTATATTAACTATGAGGAATGTAAAT	CAACTATAGGAATAGAAGGAATTAACTTAATTACTC
GTTTTATATTAACTATGAGGAATGTAAAT	CCATAAGGTAAGGCACTTAATTATATCTCGCAAATA
GTTTTATATTAACTATGAGGAATGTAAAT	TGGCTATGGGAGAAGATCAATTTGTCGATGATGATGT
GTTTTATATTAACTATGAGGAATGTAAAT	TTAGGCATACTCTCTAAAACTTTAATTTCAGCACTA
GTTTTATATTAACTATGAGGAATGTAAAT	TTTTTAAAGTCGTTGTTATAATTTAAGTACATTTTA
GTTTTATATTAACTATGAGGAATGTAAAT	TTCTCATTTAGAAGATAACTCATGCAGATACCAAGT
GTTTTATATTAACTATGAGGAATGTAAAT	TATGCAAAGCCAGCCCCAAACAATAATAATATTTG
GTTTTATATTAACTATGAGGAATGTAAAT	AACTGAAATTGATAATTTCATAGTTCCAACTGATATT
GTTTTATATTAACTATGAGGAATGTAAAT	TTATTATTTTTAGAATGGTGGATTTTCATCTTCATT
GTTTTATATTAACTATGAGGAATGTAAAT	TAATTTGAACAACATCTAAATAAATTCCTAAATTAT
GTTTTATATTAACTATGAGGAATGTAAAT	GTTTATGATAGAGATAAATTCAAAACTAACGCTAGAG
GTTTTATATTAACTATGAGGAATGTAAAT	ACAGTTCAGATTTCAGGTTTAAAATTTGTTTCTAAA
GTTTTATATTAACTATGAGGAATGTAAAT	TTAAATGAAAATAAAAGGAGATTGATTAAAATGAGT
GTTTTATATTAACTATGAGGAATGTAAAT	AAATAAATAAAAACTTTAGACATAACAAGCAGACCAC
GTTTTATATTAACTATGAGGAATGTAAAT	TAAAATCACGAGTAGAAGGGAAATTAATAGTATATA
GTTTTATATTAACTATGAGGAATGTAAAT	TTGTTCAACTTTTAAAACTATTCAAAGTGTAATGAG
GTTTTATATTAACTATGAGGAATGTAAAT	ATGGAAACAAAGAAAGATTTCCATAAGAAACAAGCTA
GTTTTATATTAACTATGAGGAATGTAAAT	AATGTAAATATGCGTATGAAAGTTAAACCTCGAAAG
GTTTTATATTAACTATGAGGAATGTAAAT	ACAATAAAGAAATAACCTAAATTATTAGAATATTGT
GTTTTATATTAACTATGAGGAATGTAAAT	GTTGAACTAAATAAATATTTCATTGAAAAGAATTCA
GTTTTATATTAACTATGAGGAATGTAAAT	ATAGGTAATAAAGTAGTTAAGTTTGAAGTAACAGCA
GTTTTATATTAACTATGAGGAATGTAAAT	TTAGTAATATTAGTATTATTTGTATTACTTAAATAT
GTTTTATATTAACTATGAGGAATGTAAAT	AGATTACAACTTGAAAAAATTGAGTTACAAAAATAA
GTTTTATATTAACTATGAGGAATGTAAAT	TATTTTCAAAATTCATGAAAACATTCCTCCTTCAAA
GTTTTATATTAACTATGAGGAATGTAAAT	TTAATTAAATCAGCTCTATACTTAAAAGCATTATCAA
GTTTTATATTAACTATGAGGAATGTAAAT	TAAGCTGTTTTTCTTATGTTTGCTTGTCTTTGTGTAG
GTTTTATATTAACTATGAGGAATGTAAAT	CTAAATATTATAAAATCTTCGTCATTAACTCTTTCAA
GTTTTATATTAACTATGAGGAATGTAAAT	ACACTTTCTAATATGTCATTAGTTTCACACCCTGCA
GTTTTATATTAACTATGAGGAATGTAAAT	ATCTCCGTATCACCTGTCCCGTTATAAATCGGCTTA
GTTTTATATTAACTATGAGGAATGTAAAT	CAGATTATATTTATTTGTTAGCATTCCATAATATTT
GTTTTATATTAACTATGAGGAATGTAAAT	ACTGTATTCTTGCTTATTATGTTTATCAACCTTACC
GTTTTATATTAACTATGAGGAATGTAAAT	TAGTTAGTTCTTGTTATAGTTGCTTCTCTTTGTGTAG
GTTTTATATTAACTATGAGGAATGTAAAT	TCTAAAAATATATGATTTTTAGTTATACTAAAAACTA
GTTTTATATTAACTATGAGGAATGTAAAT	TAATTCGTAAATATATAAATTTTATCATTATACTTT
GTTTTATATTAACTATGAGGAATGTAAAT	TGGTGATAAAAATGGGATTCTGTTCATTTATTTGCTT
GTTTTATATTAACTATGAGGAATGTAAAT	AAGCTTTATCTCTCATAGGTTTAACAAAAGTTTCAAA
GTTTTATATTAACTATGAGGAATGTAAAT	TTTTTTAGTTCTTTTTATTTTTATAAGCGTATCTA
GTTTTATATTAACTATGAGGAATGTAAAT	ATAATAACATCTAATTTATGAGTTAAATTATAATCTC
GTTTTATATTAACTATGAGGAATGTAAAT	AACCTTATCCAAATCAGGAGTAAGAAACCAAGACCAACCAA
GTTTTATATTAACTATGAGGAATGTAAAT	CCGTTAGGCTTTAGAGTTAAAGAAGGTGGTATTGAAA
GTTTTATATTAACTATGAGGAATGTAAAT	CGATGATAAAAATGCAAGCTTAACTATAAGCCATAAG
GTTTTATATTAACTATGAGGAATGTAAAT	TAGCCTGTCCAATTATTTAATTTTCTCATTTTTCTA
GTTTTATATTAACTATGAGGAATGTAAAT	GTATTAGCATCATAATAAAATGTATTTTTCTTGCCA
GTTTTATATTAACTATGAGGAATGTAAAT	GTTAGTGAATATCCAACTGCCTTTTGAACATAATTT
GTTTTATATTAACTATGAGGAATGTAAAT	TAGCCTGAAACATTAAATCTGCTTGCTCATAATCAT
GTTTTATATTAACTATGATGAATGTAAAT	TTATCAACAGCTGAGGGGATGTATAAATATTGTTTA
GTTTTATATTAACTATGAGGAATGTAAAT	ATAGATATCTATTATTTTTAATAATAATTTTTCTTT
GTTTTATATTAACTATGAGGAATGTAAAT	TGGTTAAATGAAGAATTAAATGAAATAATGAAATTA
GTTTTATATTAACTATGAGGAATGTAAAT	CTATTTACAAGTCCAGTTCCTGCTGCAATAGTATTA
GTTTTATATTAACTATGAGGAATGTAAAT	GTATATTGGACCGAGTGTTTGGAAGGTTGGAGCTTC
GTTTTATATTAACTATGAGGAATGTAAAT	GGGGCAACTGTTATAGATGGTAGAAATATAAAAACT
GTTTTATATTAACTATGAGGAATGTAAAT	ATTGGATCATATTCCTCTAATATTTTTAATAACTCT
GTTTTATATTAACTATGAGGAATGTAAAT	AATTCATTAAGCATAGAGTTCATATAAGTAGTAGTT
GTTTTATATTAACTATGAGGAATGTAAAT	ATAACCTTCATGCTTCTCTCTATGTTATTGCATTCAA
GTTTTATATTAACTATGAGGAATGTAAAT	TTACAATAAATATCTTAGCAAGTAATTTTAAAAAATC
GTTTTATATTAACTATGAGGAATGTAAAT	ACAATAGAAGGAACATCATCAGGAACAGTACCACCAA
GTTTTATATTAACTATGAGGAATGTAAAT	GAAACTTTATACCAATTTATCAAAGATACTTTCTTT
GTTTTATATTAACTATGAGGAATGTAAAT	ATGTTCCAGTTGGTAGAAAAAGAGAAATTGAAGAGA
GTTTTATATTAACTATGAGGAATGTAAAT	TTTTTAACTGAGGTTGAGAGAGTAAAGAAAAGTTGTA
GTTTTATATTAACTATGAGGAATGTAAAT	TAAAATGGCTATTATTCTGCGTAAAATACAGTTTTT
GTTTTATATTAACTATGAGGAATGTAAAT	TAACATCTTTTATCACTATCTTTAACATAATTTGTTA
GTTTTATATTAACTATGAGGAATGTAAAT	TAGCCGGGAAGTCCGAAGAATCCAAATATACCATAC
GTTTTATATTAACTATGAGGAATGTAAAT	TACCCATAGACATAGCTATAGCTGTGAACAAACAT
GTTTTATATTAACTATGAGGAATGTAAAT	TAGCCGGGAAGTCCGAAGAATCCAAATATACCATAC
GTTTTATATTAACTATGAGGAATGTAAAT	TTACCTTCTAAGAATCTATAATCATCTAATAAGTTG
GTTTTATATTAACTATGAGGAATGTAAAT	GTTAATTCTATTATTCTATTTAACTCATTTAATATCG
GTTTTATATTAACTATGAGGAATGTAAAT	AAAACTTGGTTAGATGAAACTAATAATTTTCCTAAA
GTTTTATATTAACTATGAGGAATGTAAAT	ATTATAATTTTAATAAAAGATGTTTTAAATAGAGAAG
GTTTTATATTAACTATGAGAAATGTAAAT	TCATCTGATAAAACTCTTAAAATAATATATTGATTAC
GTTTTATATTAATTATGATGGGTGTAAAA

>NZ_AP017630|2|1|1094522-1099454|CRT
GTTTTATATTAACTATGAGGAATGTAAAT	AAATACAAGGATATACTTGACTATAAATTAGGGGACAC
GTTTTATATTAACTATGAGGAATGTAAAT	TTTTCTTTAATCTTTTAGTATTTTCACATGTTTTTAA
GTTTTATATTAACTATGAGGAATGTAAAT	ACTTAGATAAATAAGATTGACTTATCTTTATTTTTT
GTTTTATATTAACTATGAGGAATGTAAAT	CATAATAGAATTGAATGATGACTTTGGTAAAGCTTTG
GTTTTATATTAACTATGAGGAATGTAAAT	TTCAAACTAACTAAAACAATAAGTAAAAACTAAGTA
GTTTTATATTAACTATGAGGAATGTAAAT	TTAAATAATCCTTTTGAAAATATATGGGACAAAATT
GTTTTATATTAACTATGAGGAATGTAAAT	CAACTATAGGAATAGAAGGAATTAACTTAATTACTC
GTTTTATATTAACTATGAGGAATGTAAAT	CCATAAGGTAAGGCACTTAATTATATCTCGCAAATA
GTTTTATATTAACTATGAGGAATGTAAAT	TGGCTATGGGAGAAGATCAATTTGTCGATGATGATGT
GTTTTATATTAACTATGAGGAATGTAAAT	TTAGGCATACTCTCTAAAACTTTAATTTCAGCACTA
GTTTTATATTAACTATGAGGAATGTAAAT	TTTTTAAAGTCGTTGTTATAATTTAAGTACATTTTA
GTTTTATATTAACTATGAGGAATGTAAAT	TTCTCATTTAGAAGATAACTCATGCAGATACCAAGT
GTTTTATATTAACTATGAGGAATGTAAAT	TATGCAAAGCCAGCCCCAAACAATAATAATATTTG
GTTTTATATTAACTATGAGGAATGTAAAT	AACTGAAATTGATAATTTCATAGTTCCAACTGATATT
GTTTTATATTAACTATGAGGAATGTAAAT	TTATTATTTTTAGAATGGTGGATTTTCATCTTCATT
GTTTTATATTAACTATGAGGAATGTAAAT	TAATTTGAACAACATCTAAATAAATTCCTAAATTAT
GTTTTATATTAACTATGAGGAATGTAAAT	GTTTATGATAGAGATAAATTCAAAACTAACGCTAGAG
GTTTTATATTAACTATGAGGAATGTAAAT	ACAGTTCAGATTTCAGGTTTAAAATTTGTTTCTAAA
GTTTTATATTAACTATGAGGAATGTAAAT	TTAAATGAAAATAAAAGGAGATTGATTAAAATGAGT
GTTTTATATTAACTATGAGGAATGTAAAT	AAATAAATAAAAACTTTAGACATAACAAGCAGACCAC
GTTTTATATTAACTATGAGGAATGTAAAT	TAAAATCACGAGTAGAAGGGAAATTAATAGTATATA
GTTTTATATTAACTATGAGGAATGTAAAT	TTGTTCAACTTTTAAAACTATTCAAAGTGTAATGAG
GTTTTATATTAACTATGAGGAATGTAAAT	ATGGAAACAAAGAAAGATTTCCATAAGAAACAAGCTA
GTTTTATATTAACTATGAGGAATGTAAAT	AATGTAAATATGCGTATGAAAGTTAAACCTCGAAAG
GTTTTATATTAACTATGAGGAATGTAAAT	ACAATAAAGAAATAACCTAAATTATTAGAATATTGT
GTTTTATATTAACTATGAGGAATGTAAAT	GTTGAACTAAATAAATATTTCATTGAAAAGAATTCA
GTTTTATATTAACTATGAGGAATGTAAAT	ATAGGTAATAAAGTAGTTAAGTTTGAAGTAACAGCA
GTTTTATATTAACTATGAGGAATGTAAAT	TTAGTAATATTAGTATTATTTGTATTACTTAAATAT
GTTTTATATTAACTATGAGGAATGTAAAT	AGATTACAACTTGAAAAAATTGAGTTACAAAAATAA
GTTTTATATTAACTATGAGGAATGTAAAT	TATTTTCAAAATTCATGAAAACATTCCTCCTTCAAA
GTTTTATATTAACTATGAGGAATGTAAAT	TTAATTAAATCAGCTCTATACTTAAAAGCATTATCAA
GTTTTATATTAACTATGAGGAATGTAAAT	TAAGCTGTTTTTCTTATGTTTGCTTGTCTTTGTGTAG
GTTTTATATTAACTATGAGGAATGTAAAT	CTAAATATTATAAAATCTTCGTCATTAACTCTTTCAA
GTTTTATATTAACTATGAGGAATGTAAAT	ACACTTTCTAATATGTCATTAGTTTCACACCCTGCA
GTTTTATATTAACTATGAGGAATGTAAAT	ATCTCCGTATCACCTGTCCCGTTATAAATCGGCTTA
GTTTTATATTAACTATGAGGAATGTAAAT	CAGATTATATTTATTTGTTAGCATTCCATAATATTT
GTTTTATATTAACTATGAGGAATGTAAAT	ACTGTATTCTTGCTTATTATGTTTATCAACCTTACC
GTTTTATATTAACTATGAGGAATGTAAAT	TAGTTAGTTCTTGTTATAGTTGCTTCTCTTTGTGTAG
GTTTTATATTAACTATGAGGAATGTAAAT	TCTAAAAATATATGATTTTTAGTTATACTAAAAACTA
GTTTTATATTAACTATGAGGAATGTAAAT	TAATTCGTAAATATATAAATTTTATCATTATACTTT
GTTTTATATTAACTATGAGGAATGTAAAT	TGGTGATAAAAATGGGATTCTGTTCATTTATTTGCTT
GTTTTATATTAACTATGAGGAATGTAAAT	AAGCTTTATCTCTCATAGGTTTAACAAAAGTTTCAAA
GTTTTATATTAACTATGAGGAATGTAAAT	TTTTTTAGTTCTTTTTATTTTTATAAGCGTATCTA
GTTTTATATTAACTATGAGGAATGTAAAT	ATAATAACATCTAATTTATGAGTTAAATTATAATCTC
GTTTTATATTAACTATGAGGAATGTAAAT	AACCTTATCCAAATCAGGAGTAAGAAACCAAGACCAACCAA
GTTTTATATTAACTATGAGGAATGTAAAT	CCGTTAGGCTTTAGAGTTAAAGAAGGTGGTATTGAAA
GTTTTATATTAACTATGAGGAATGTAAAT	CGATGATAAAAATGCAAGCTTAACTATAAGCCATAAG
GTTTTATATTAACTATGAGGAATGTAAAT	TAGCCTGTCCAATTATTTAATTTTCTCATTTTTCTA
GTTTTATATTAACTATGAGGAATGTAAAT	GTATTAGCATCATAATAAAATGTATTTTTCTTGCCA
GTTTTATATTAACTATGAGGAATGTAAAT	GTTAGTGAATATCCAACTGCCTTTTGAACATAATTT
GTTTTATATTAACTATGAGGAATGTAAAT	TAGCCTGAAACATTAAATCTGCTTGCTCATAATCAT
GTTTTATATTAACTATGATGAATGTAAAT	TTATCAACAGCTGAGGGGATGTATAAATATTGTTTA
GTTTTATATTAACTATGAGGAATGTAAAT	ATAGATATCTATTATTTTTAATAATAATTTTTCTTT
GTTTTATATTAACTATGAGGAATGTAAAT	TGGTTAAATGAAGAATTAAATGAAATAATGAAATTA
GTTTTATATTAACTATGAGGAATGTAAAT	CTATTTACAAGTCCAGTTCCTGCTGCAATAGTATTA
GTTTTATATTAACTATGAGGAATGTAAAT	GTATATTGGACCGAGTGTTTGGAAGGTTGGAGCTTC
GTTTTATATTAACTATGAGGAATGTAAAT	GGGGCAACTGTTATAGATGGTAGAAATATAAAAACT
GTTTTATATTAACTATGAGGAATGTAAAT	ATTGGATCATATTCCTCTAATATTTTTAATAACTCT
GTTTTATATTAACTATGAGGAATGTAAAT	AATTCATTAAGCATAGAGTTCATATAAGTAGTAGTT
GTTTTATATTAACTATGAGGAATGTAAAT	ATAACCTTCATGCTTCTCTCTATGTTATTGCATTCAA
GTTTTATATTAACTATGAGGAATGTAAAT	TTACAATAAATATCTTAGCAAGTAATTTTAAAAAATC
GTTTTATATTAACTATGAGGAATGTAAAT	ACAATAGAAGGAACATCATCAGGAACAGTACCACCAA
GTTTTATATTAACTATGAGGAATGTAAAT	GAAACTTTATACCAATTTATCAAAGATACTTTCTTT
GTTTTATATTAACTATGAGGAATGTAAAT	ATGTTCCAGTTGGTAGAAAAAGAGAAATTGAAGAGA
GTTTTATATTAACTATGAGGAATGTAAAT	TTTTTAACTGAGGTTGAGAGAGTAAAGAAAAGTTGTA
GTTTTATATTAACTATGAGGAATGTAAAT	TAAAATGGCTATTATTCTGCGTAAAATACAGTTTTT
GTTTTATATTAACTATGAGGAATGTAAAT	TAACATCTTTTATCACTATCTTTAACATAATTTGTTA
GTTTTATATTAACTATGAGGAATGTAAAT	TAGCCGGGAAGTCCGAAGAATCCAAATATACCATAC
GTTTTATATTAACTATGAGGAATGTAAAT	TACCCATAGACATAGCTATAGCTGTGAACAAACAT
GTTTTATATTAACTATGAGGAATGTAAAT	TAGCCGGGAAGTCCGAAGAATCCAAATATACCATAC
GTTTTATATTAACTATGAGGAATGTAAAT	TTACCTTCTAAGAATCTATAATCATCTAATAAGTTG
GTTTTATATTAACTATGAGGAATGTAAAT	GTTAATTCTATTATTCTATTTAACTCATTTAATATCG
GTTTTATATTAACTATGAGGAATGTAAAT	AAAACTTGGTTAGATGAAACTAATAATTTTCCTAAA
GTTTTATATTAACTATGAGGAATGTAAAT	ATTATAATTTTAATAAAAGATGTTTTAAATAGAGAAG
GTTTTATATTAACTATGAGAAATGTAAAT	TCATCTGATAAAACTCTTAAAATAATATATTGATTAC
GTTTTATATTAATTATGATGGGTGTAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP017630.1\|WP_096515746.1\|1083479_1083869_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017630.1\|WP_096515760.1\|1107812_1108436_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223483
NZ_AP017630.1\|WP_096515749.1\|1086391_1087375_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
NZ_AP017630.1\|WP_096515758.1\|1105024_1105882_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_AP017630.1\|WP_096515759.1\|1106266_1107058_+\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|369792
NZ_AP017630.1\|WP_096515751.1\|1088822_1090160_+\|type-I-CRISPR-associated-protein-Cas8a1/Csx8	cas8b2	cd09744_cas8b2_CAS-I-B	gnl\|CDD\|187875
NZ_AP017630.1\|WP_096515762.1\|1110478_1110826_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017630.1\|WP_096515747.1\|1083869_1084559_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017630.1\|WP_011591959.1\|1085868_1086390_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NZ_AP017630.1\|WP_096515753.1\|1091050_1092145_+\|CRISPR-associated-protein-Cas5	cas5	cd09658_cas5_CAS-I-B	gnl\|CDD\|274218
NZ_AP017630.1\|WP_096515756.1\|1101633_1102191_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017630.1\|WP_096515754.1\|1099838_1100534_-\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|223803
NZ_AP017630.1\|WP_096515755.1\|1100555_1101260_-\|B3/4-domain-containing-protein	unknown	unknown	gnl\|CDD\|225917
NZ_AP017630.1\|WP_096515763.1\|1111411_1111570_+\|spore-coat-associated-protein-CotJA	unknown	unknown	gnl\|CDD\|378536
NZ_AP017630.1\|WP_096515748.1\|1084807_1085758_+\|WYL-domain-containing-transcriptional-regulator	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
NZ_AP017630.1\|WP_096515761.1\|1108734_1110360_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_AP017630.1\|WP_096515752.1\|1090159_1091047_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|187818
NZ_AP017630.1\|WP_096515750.1\|1088076_1088799_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|187783
NZ_AP017630.1\|WP_096515757.1\|1103819_1104968_+\|lactaldehyde-reductase	unknown	unknown	gnl\|CDD\|182595
NZ_AP017630.1\|WP_004456276.1\|1087421_1087685_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856

Protein	Function_ID	Function_description	E-value
NZ_AP017630.1\|WP_096515760.1\|1107812_1108436_+\|histidine-phosphatase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	4.48834e-33
NZ_AP017630.1\|WP_096515749.1\|1086391_1087375_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	3.89497e-155
NZ_AP017630.1\|WP_096515758.1\|1105024_1105882_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	7.94013e-33
NZ_AP017630.1\|WP_096515759.1\|1106266_1107058_+\|HAD-family-hydrolase	gnl\|CDD\|369792	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase. This family contains haloacid dehalogenase-like hydrolase enzymes.	6.90346e-47
NZ_AP017630.1\|WP_096515751.1\|1088822_1090160_+\|type-I-CRISPR-associated-protein-Cas8a1/Csx8	gnl\|CDD\|187875	cd09744, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as Csx8 family.	0
NZ_AP017630.1\|WP_096515763.1\|1111411_1111570_+\|spore-coat-associated-protein-CotJA	gnl\|CDD\|378536	pfam11007, CotJA, Spore coat associated protein JA (CotJA). CotJA is part of the CotJ operon which contains CotJA and CotJC. The operon encodes spore coat proteins. Interaction of CotJA with CotJC is required for the assembly of both CotJA and CotJC into the spore coat.	3.48601e-11
NZ_AP017630.1\|WP_011591959.1\|1085868_1086390_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	1.21063e-57
NZ_AP017630.1\|WP_096515753.1\|1091050_1092145_+\|CRISPR-associated-protein-Cas5	gnl\|CDD\|274218	TIGR02593, CRISPR-associated_protein_Cas5, CRISPR-associated protein Cas5, N-terminal domain. This model represents a shared N-terminal domain, about 43 amino acids in length, common to a number of related protein families each of which is associated with a distinct subtype of CRISPR/cas system, where CRISPR is an acronym for Clustered Regularly Interspaced Short Palindromic Repeat and Cas is an abbreviation for CRISPR-associated. Members of this family are widely distributed enough that we designated the family Cas5. Homology appears remote, or absent, between the more C-terminal regions different subfamilies of these proteins, which typically are 210 to 265 amino acids in total length. Cas5 proteins of six different CRISPR/cas subtypes so far defined are described by respective full-length models TIGR01868, TIGR01876, TIGR01895, TIGR01874, TIGR02586, and TIGR02592. The best characterized protein in this family is DevS or Myxococcus xanthus, a Cas protein that appears to participate in a species-specific developmental pathway.	2.85289e-08
NZ_AP017630.1\|WP_096515754.1\|1099838_1100534_-\|radical-SAM-protein	gnl\|CDD\|223803	COG0731, COG0731, Fe-S oxidoreductases [Energy production and conversion].	3.88856e-18
NZ_AP017630.1\|WP_096515755.1\|1100555_1101260_-\|B3/4-domain-containing-protein	gnl\|CDD\|225917	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only].	4.40526e-101
NZ_AP017630.1\|WP_096515748.1\|1084807_1085758_+\|WYL-domain-containing-transcriptional-regulator	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	1.05644e-32
NZ_AP017630.1\|WP_096515761.1\|1108734_1110360_+\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	2.24637e-56
NZ_AP017630.1\|WP_096515752.1\|1090159_1091047_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|187818	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Cst2/DevR family.	4.82182e-49
NZ_AP017630.1\|WP_096515750.1\|1088076_1088799_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|187783	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex; RAMP superfamily protein; Possesses double RRM/ferredoxin fold.	4.77422e-24
NZ_AP017630.1\|WP_096515757.1\|1103819_1104968_+\|lactaldehyde-reductase	gnl\|CDD\|182595	PRK10624, PRK10624, L-1,2-propanediol oxidoreductase; Provisional.	0
NZ_AP017630.1\|WP_004456276.1\|1087421_1087685_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.30876e-27

>NZ_AP017630.1|WP_096515753.1|1091050_1092145_+|CRISPR-associated-protein-Cas5
MKALRIILTQNSANYRREETTVNKMTYPLPPFSTVIGAIHNACNYKEYKPMDISIQGTYESMGLEPYTDYCFLNTVMDDRGILVKLRNGKYLSNSFDKVAKALKSQGNSFREGKTIQVYNEKLLEEYRDLKDLKDKIDEFSRGKLKDVLNLIKLRKKTLASKKKELKDNKEKLELIKKREVQIKNLEKRLKSKFDDYKEKNYNEPYSKFASLTTSLKYYETLYNVKLIIHVRCEDENTLLDIKENIYNLKSIGRSEDFVDIKEVKIVDLVEDPDELEDEIVNNNYAYVNYDLVKNDIIIPINLSDNRVCNGTKYLLNKNYKIENKKRKFEKKKVLYISKYVVDEAYENLYFDVEDKEKYIVNFI
>NZ_AP017630.1|WP_096515752.1|1090159_1091047_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MKGKSVTLTVIANMTSNYGEGLGNISSVQKVFKNGKTYAARSKESLKNAIMVQSGLYDDLETSLDKKVNQKVVSKDLNVTNCRALEGGYMNTSDNTYVRKSSFYLTDAVSCDEFINEYRFHNNLYLATNYAKHNNINLQGNAQKAGLMPYQYEFDKSLKIYSLTIDLDMIGRDENFDSEEASAEEKAYRVNAILDAVKNLSLIVKGNLDNAEPIFVVGGIINRKTHYFENLVKVKNDKLEITEELKDRINNGCYVGFLEGGNFENEVQIKEELKPLTVSKFFSNLEEEVRKYYGV
>NZ_AP017630.1|WP_096515751.1|1088822_1090160_+|type-I-CRISPR-associated-protein-Cas8a1/Csx8
MEEKVFDCTLETGDWRESATIVGLIKYFDFLYQNGVADKSELYEFEDDYLRYNSNYISEENYLLFVEKYFKDAMHHKVVENILLKDELSEDEISIINDKLKANQAMKSIFGKIKYTGENKEEILDLIEKNRLKLIKETYRRGKSLYSNFANENLLFSDNNKVCRLVNYCADMGKKGKSLGYYWDNNTFEFKDEKIFDFIPFAFSKSYDAFFINNNVSIKELKKSNSFIENSENTRTTLFGNMKESAEYIGFDVEVILKSRDKNYYETVYVREKAINIFKQSDDFDYKGIKFWYRDDEKNPKYMEPEVVNRILNGIRMDSIIELLFKSKNNHSYNIKTLIAINNLIYEGGSEMTKNMKSAYASAKRVSEKLEENKLNSYKQKLISAVTFKNKDRFCEILLQLSSFSGVVFDFAYDLFDDFENNKNLAYTFINALNKEGNKENGGDK
>NZ_AP017630.1|WP_096515750.1|1088076_1088799_+|CRISPR-associated-endoribonuclease-Cas6
MKILVAGKMKNKKISLSYRMFILSMIKKIISDFDQSYFEEMFFYEGKKTKKTKPFTFSVFFKDYKINRDFVDVEGEVKIVISTPDIKLNMVLFNGFMKMKEYGDFEKTSVRIEKERKVEENEAIFKTLSPIFIKDANNKALEIEDENYNKELNYFANLSLKSFRGYGLKEELVFTPLKMKKVVVKEEISGFKEKTNKKYIYFNSYSGVFHLRGDKDDLNLLKELGIGVRRNSGFGSIDLI
>NZ_AP017630.1|WP_004456276.1|1087421_1087685_+|CRISPR-associated-endonuclease-Cas2
MFVILTYDVGEKRVNRVRKILKKYLIWTQNSVFEGKITEAKLHKCLSEINKDFIKDEDSLYIYRVKNPNNLEKDIIGFEKNCDDLFL
>NZ_AP017630.1|WP_096515749.1|1086391_1087375_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MGRDYYIFSNGRIKRKENTIYFEDFEGNKKGLPIEDIERLHIFGEVDLNTKFLNYISRYSVLISIYNYYGFYSGSYYSKKKNVSGVLLVNQALAYDNYEFRVAIAKTLIDSAMHHILRNLRRYKEKTSEFVKVIENERKIMKEAKTIEDVMGAEGRARKKYYESYNAFLKNDFHFNKREKKPPNDPINALISFGNSMMYTTVLGEIYKTQLDPTISYLHEPSTKRFSLSLDLAEIFKPLIVDSVIFNMINKGMIKKSDFDIDEGICYLNENGRKKFIKEYENKLSTTVRHRTLNRNVSYRGLIRLECYKLIKMLLGDEDYKPLKAWW
>NZ_AP017630.1|WP_011591959.1|1085868_1086390_+|CRISPR-associated-protein-Cas4
MEFDFENLKVQGIKFNYYFVCKRKLWLFDKGISMEDNSDRVLHGKVVHENSYIRSNSHKEKLVDDIIKLDIMENETVKEVKLSSKMKISDRMQILYYLFYLKQIGINKKGAIHYVKEKRIEEVELTEDDENRIRETLLKINEIIRGKKPPKIEKLPYCKKCAYYEFCYAGERD
>NZ_AP017630.1|WP_096515748.1|1084807_1085758_+|WYL-domain-containing-transcriptional-regulator
MSTLGNTLRMLMMLRSGRKLKVKEIAEELEVSEKQVKRYKEALSEFFYIESKSGIDGGYILRDKYIPIKELLDEHEINLLKYSIDALEDLSLESNKDLKRAIDKINYSIEKGHNSNNEKTNSIIPYGRSLPINNKLQEMIDVIFEAIISNKEVFIEYSGNNGEVSKRTIQPYKIFTFKGEQYVIANCLSKNQVRYFKLIRIKGYHISNKIFKKTLDVDKLIENNKKNSIGIFGGKKYNLILEITPPIANTIKEKIWVDNQEVIELENGKILFKATMEGLPEIISWILSMREYVKIIEPLEIKEEVRLSVQKIINNL
>NZ_AP017630.1|WP_096515747.1|1083869_1084559_+|hypothetical-protein
MHSSKKLNSYIVANLIIIGIIFISSILMHRISIIFFLNLILIGALNMALLNRAKYSLDLLRKLRSLEEVDFPRFKDVSMVLLGILFSIVTYTSLFLDSLGIIDISKTFGNSGQANNTLISALFLIIFLWAFITNLSGAIVTESTNKGRKIFDLSENTVALGSEALNRATGSFKDGIILGYYIFYFKNIQVAYRDKSGNIIVEGYDKSPFKITIAAKRSKKYFSKILDVD
>NZ_AP017630.1|WP_096515746.1|1083479_1083869_+|hypothetical-protein
MNKNKKFKFIVYLDNKELAKQFFYTNIAPFTYYTLPVCGIPAGKVIFEIENRKVYLKAKLNDFEQGEHIETLSEIDFEDLEDFSINKTKNKDVYHITMAKGKHKVCLNCSNGLNDDLAKEIVQYVRESA
>NZ_AP017630.1|WP_096515754.1|1099838_1100534_-|radical-SAM-protein
MNNFTYKEVYIEDGKRVLEINVLPEKYCNFDCIFCPIGRSKNKIDTQKSFDNMDEALIELGNIINDTKPDLIFINSKGEALINDKIEDIIDFIKSKGVPVRLLSNGYILGKNEYIKIANKCDEVIGEIKVITEEDFKKVQRPIEGYTLHEYISNMTSFNKQYNGKFIFEITIVKGYNDDSESVNKLKEVIKTISPNKVIVARIDDDVFKKKLGISDERFEEISRELLDVSC
>NZ_AP017630.1|WP_096515755.1|1100555_1101260_-|B3/4-domain-containing-protein
MKKFIIEDDFWELFPNAKIGIITCNGIDNTIKDENQYKDMISQGEKEALSHLPNEEFSSNEVIKVWRDAFKKFKTKKGARSSIEALLKRVSTGKGLGTINPLVDIYNSISLKYAMPCGGEDMDKFVGDIRLTKATGDESFITLGSDKSEPPYEGEIVYKDDEGAICRCWNWRESVRTMLTEDTKNAFLCIELVDENREKDFKNALKELSQLVEENLGGKSEISILHINNKEAII
>NZ_AP017630.1|WP_096515756.1|1101633_1102191_+|hypothetical-protein
MKKRIERLIIFCMLITITIPNIAYAKTNMRYEQEKTNIVEPYGPKIEDLKSKDVIINNLQEIKRIRGNLIAVNISESSTPNELKDIYNRLDFYIQEFIEIKKNLDNNIKTYTNSFSDKFFSEQVLFIAESYIVSLRQQQNLIIALQEKKVDAKKLVYSSYLIPIYHYITLGDQMTAYVDTYFVVI
>NZ_AP017630.1|WP_096515757.1|1103819_1104968_+|lactaldehyde-reductase
MVNRIVLNETSYHGAGAIKEIVTEVRGRGFKKAFLCSDPDLVKFGVTGKVTSILDEANLSYELYTNIKANPTIENVKSGVEAYKKSGADYIIAVGGGSSMDTAKAIGIIINNKEFEDVVSLEGVAPTKNKSVPIIAVPTTAGTAAEVTINYVITDVEKNRKFVCVDTHDIPVVAIIDPEMMQSMPKGLTAATGMDALTHAIEGYITGAAWEMTDMFHLKAIELISKHLRGAVENTPEGREKMALGQYIAGMGFSNVGLGIVHSMAHSLGAVYDTPHGVANAIILPTVMEYNAEETGDKYKYIAAAMGVENTENMTVEEYRKAAVDAVKKLSEDVGIPANLKDIVKKEDIRFLAESAYNDACRPGNPKETSVEDIIALYESLI
>NZ_AP017630.1|WP_096515758.1|1105024_1105882_-|AraC-family-transcriptional-regulator
MRFFDYKEKKQHGTFDFPIEFYHVTPNHPRYNMSYHWHTECEIIRILEGEFILFIDKEKIVAKKNDIIFVHSGIFHGGFPKDCIYECIVFDMKLFLKDNNACTKQIYDIVNHNKVIAPKLPSNIQALNNCCTSLFEAMRVKSTGYEFIAQGALYYLIGTILEHQLYVKNNKYTKKTKERFLQFKNVITLIENEYQNPLTLDDLSKASGMSPKYFCRFFHEMINKTPIEYLNYYRIEIACEKLLATELSITEIALNCGFNDVSYFIKTFKKHKGVTPKQYLKPLKA
>NZ_AP017630.1|WP_096515759.1|1106266_1107058_+|HAD-family-hydrolase
MKLLASDFDGTLLVDKKINKRDIEGIKALRKKGHKFIISTGRTLLTMEGVIEKYDLEFDYLVLCNGAVILDKNKKVIKNNLVDFQAVKKIIEEFADQDKIMIYFDDGSGMKLIENKSVDMKNLYFSEEIYFDLVKKEEILNLKSGAVILSICTSDASVERGEEIKERLIEIFGDELSIFRNQFFVDISSKGSSKGEGLKEVLKLENKNLNDIYTIGDSFNDISMLEITDNSYTFNRAEDEVKAHANNHVDYVHEIINHIVKGK
>NZ_AP017630.1|WP_096515760.1|1107812_1108436_+|histidine-phosphatase-family-protein
MKSIITIQHTESIHHTNGMVGSWTDWDLSELGIKQANNIGRNLSKELENKKYVMYSSDLLRAKHTAKIIGKHLGVEPILVRELRERNLGRCVGKSVKWLKENIEKEEKSIDDKMFSDAESRRDEWNRLLPFFNELMASEYENIIIVSHGDLLSVFNSMWLGMEVEMLNKSELFGLAGGVTFMEETASGERVIKRMSDMSYVNGYTLL
>NZ_AP017630.1|WP_096515761.1|1108734_1110360_+|EAL-domain-containing-protein
MKKNKRFIMLILFFLVFIMLFLCHGSIINKEQRKTLVKIGFYDDYPHFYIDHKANVCGYYKDITEKLAKKLNFKIEYVNGKAPDLLKELKNGEIDLVFGINKLPEREEFFDFTNKPINDELKLIYTNTDIKYGDLEALNGMKMGYIEGELDNEWILEYLKKRNINVELVKGSSYKAIKTLLAENKVDFIVDNPDSDIKNKGENIREIFEFSSGPKYIVANKNNNELIKKIDGALSTINLNGYLGNNHYFKQIHNFIIATTNKNVIILIIFIICIIMFKRVKKIIVKILKKKKICNDLKKDNYTLYYQPIVDFKHNTVRSVEALLRLRKDGKLLTPYYFMKDIEDANMMKEITLWVLNRVIKDYNIIKFYENINEKDFYISLNVSFNEIKDREFLKKIVKIVNDSKIIKNSICLEIIEKFGVEEIEKIQENIKFLQDNGILIAIDDFGVEYSNLDLLKKIDSNIIKLDKFFADGINDSEISLKVIDFILDICRLSDKSIVIEGIEEKDQVDIIKTFLYEKVYIQGYYFSKPLDIESLKTYTF
>NZ_AP017630.1|WP_096515762.1|1110478_1110826_+|hypothetical-protein
MKIGRVREDANDAFESLIGFEFILLDLKIKDKFMVLNPLTTEGFEKFYYEIFKRFGKDVINKKYKDFLKYMMSEECGFDICSDIDNFKNLRDFTEDDKKSYNFALENFKGKYGLQ
>NZ_AP017630.1|WP_096515763.1|1111411_1111570_+|spore-coat-associated-protein-CotJA
MYDCTDDKFKLEYARAYILPQKYENLYSICKGFWKGTIFKDLYRPYKEKKEY

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Crispr_ID: NZ_AP017630_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP017630_3

2152717-2152826

Orphan

Consensus_repeat	Method
TATTTAAATCTATTACTTTACATAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP017630_3

>merge|NZ_AP017630|3|2152717-2152826|CRISPRCasFinder
TATTTAAATCTATTACTTTACATAAGAAATTATTCTAATTATTTTTAAAATAATAAATCTTTTTTGGAGACATCTTCTTTTCTTATATTTAAATTTATTACTTTACATAA

>NZ_AP017630|3|3|2152717-2152826|CRISPRCasFinder
TATTTAAATCTATTACTTTACATAA	GAAATTATTCTAATTATTTTTAAAATAATAAATCTTTTTTGGAGACATCTTCTTTTCTTA
TATTTAAATTTATTACTTTACATAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP017630.1\|WP_096516511.1\|2148036_2148642_-\|stage-III-sporulation-protein-AG	unknown	unknown	gnl\|CDD\|274319
NZ_AP017630.1\|WP_096516512.1\|2148656_2149214_-\|stage-III-sporulation-protein-AF	unknown	unknown	gnl\|CDD\|131942
NZ_AP017630.1\|WP_096516510.1\|2147039_2147429_-\|Asp23/Gls24-family-envelope-stress-response-protein	unknown	unknown	gnl\|CDD\|377129
NZ_AP017630.1\|WP_096516523.1\|2157222_2158242_-\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|224376
NZ_AP017630.1\|WP_003451464.1\|2152896_2153259_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017630.1\|WP_172861122.1\|2155827_2156139_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017630.1\|WP_096516513.1\|2149221_2150394_-\|stage-III-sporulation-protein-AE	unknown	unknown	gnl\|CDD\|213743
NZ_AP017630.1\|WP_096516517.1\|2154100_2154448_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017630.1\|WP_096516522.1\|2156801_2157230_-\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|236714
NZ_AP017630.1\|WP_096516521.1\|2156273_2156783_-\|type-II-secretion-system-protein	unknown	unknown	gnl\|CDD\|225076
NZ_AP017630.1\|WP_096516516.1\|2151813_2152698_-\|stage-III-sporulation-protein-AA	unknown	unknown	gnl\|CDD\|274324
NZ_AP017630.1\|WP_096517108.1\|2155430_2155781_-\|type-IV-pilin	unknown	unknown	unknown
NZ_AP017630.1\|WP_096516514.1\|2150404_2150791_-\|stage-III-sporulation-protein-AD	unknown	unknown	gnl\|CDD\|131896
NZ_AP017630.1\|WP_096516518.1\|2154444_2154885_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239682
NZ_AP017630.1\|WP_011592695.1\|2150877_2151075_-\|stage-III-sporulation-protein-AC	unknown	unknown	gnl\|CDD\|131895
NZ_AP017630.1\|WP_003451649.1\|2153372_2153930_-\|elongation-factor-P	unknown	unknown	gnl\|CDD\|234788
NZ_AP017630.1\|WP_096516519.1\|2154853_2155456_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017630.1\|WP_096516515.1\|2151150_2151666_-\|stage-III-sporulation-protein-SpoAB	unknown	unknown	gnl\|CDD\|131880
NZ_AP017630.1\|WP_003451187.1\|2146513_2146921_-\|transcription-antitermination-factor-NusB	unknown	unknown	gnl\|CDD\|234686
NZ_AP017630.1\|WP_003451536.1\|2147513_2148011_-\|SpoIIIAH-like-family-protein	unknown	unknown	gnl\|CDD\|378918

Protein	Function_ID	Function_description	E-value
NZ_AP017630.1\|WP_096516511.1\|2148036_2148642_-\|stage-III-sporulation-protein-AG	gnl\|CDD\|274319	TIGR02830, Stage_III_sporulation_protein_AG, stage III sporulation protein AG. CC A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is found in a spore formation operon and is designated stage III sporulation protein AG. [Cellular processes, Sporulation and germination].	1.31759e-70
NZ_AP017630.1\|WP_096516512.1\|2148656_2149214_-\|stage-III-sporulation-protein-AF	gnl\|CDD\|131942	TIGR02896, Stage_III_sporulation_protein_AF, stage III sporulation protein AF. This family represents the stage III sporulation protein AF of the bacterial endospore formation program, which exists in some but not all members of the Firmicutes (formerly called low-GC Gram-positives). The C-terminal region of this protein is poorly conserved, so only the N-terminal region, which includes two predicted transmembrane domains, is included in the seed alignment. [Cellular processes, Sporulation and germination].	6.58854e-26
NZ_AP017630.1\|WP_096516510.1\|2147039_2147429_-\|Asp23/Gls24-family-envelope-stress-response-protein	gnl\|CDD\|377129	pfam03780, Asp23, Asp23 family, cell envelope-related function. The alkaline shock protein Asp23 was identified as an alkaline shock protein that was expressed in a sigmaB-dependent manner in Staphylococcus aureus. Following an alkaline shock Asp23 accumulates in the soluble protein fraction of the S. aureus cell. Asp23 is one of the most abundant proteins in the cytosolic protein fraction of stationary S. aureus cells, with a copy-number of >25000 per cell. A second Asp23-family protein, AmaP, which is encoded within the asp23-operon, is required to localize Asp23 to the cell membrane. The overall function for the family is thus a cell envelope-related one in Gram-positive bacteria.	4.24573e-30
NZ_AP017630.1\|WP_096516518.1\|2154444_2154885_-\|hypothetical-protein	gnl\|CDD\|239682	cd03711, Tet_C, Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to the C terminal domains of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.	5.2787e-05
NZ_AP017630.1\|WP_096516513.1\|2149221_2150394_-\|stage-III-sporulation-protein-AE	gnl\|CDD\|213743	TIGR02829, Stage_III_sporulation_protein_AE, stage III sporulation protein AE. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is found in a spore formation operon and is designated stage III sporulation protein AE. [Cellular processes, Sporulation and germination].	3.15837e-149
NZ_AP017630.1\|WP_096516522.1\|2156801_2157230_-\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	gnl\|CDD\|236714	PRK10557, PRK10557, prepilin peptidase-dependent protein.	0.00697234
NZ_AP017630.1\|WP_096516521.1\|2156273_2156783_-\|type-II-secretion-system-protein	gnl\|CDD\|225076	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion].	0.00202911
NZ_AP017630.1\|WP_096516516.1\|2151813_2152698_-\|stage-III-sporulation-protein-AA	gnl\|CDD\|274324	TIGR02858, Stage_III_sporulation_protein_AA, stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. [Cellular processes, Sporulation and germination].	5.67086e-161
NZ_AP017630.1\|WP_096516514.1\|2150404_2150791_-\|stage-III-sporulation-protein-AD	gnl\|CDD\|131896	TIGR02849, Stage_III_sporulation_protein_AD, stage III sporulation protein AD. Members of this family are the uncharacterized protein SpoIIIAD, part of the spoIIIA operon that acts at sporulation stage III as part of a cascade of events leading to endospore formation. Note that the start sites of members of this family as annotated tend to be variable; quite a few members have apparent homologous protein-coding regions continuing upstream of the first available start codon. The length of the alignment and the scoring cutoff thresholds for the model have been set to try to detect all valid members of the family, even if annotation of the start site begins too far downstream. [Cellular processes, Sporulation and germination].	2.32885e-33
NZ_AP017630.1\|WP_096516523.1\|2157222_2158242_-\|type-II-secretion-system-F-family-protein	gnl\|CDD\|224376	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion].	7.92857e-48
NZ_AP017630.1\|WP_011592695.1\|2150877_2151075_-\|stage-III-sporulation-protein-AC	gnl\|CDD\|131895	TIGR02848, Stage_III_sporulation_protein_AC, stage III sporulation protein AC. Members of this protein family are designated SpoIIIAC, part of the spoIIIA operon of sporulation genes whose mutant phenotype is linked to sporulation stage III. Members of this family are encoded by the genome of a species if and only if that species is capable of endospore formation, as in Bacillus subtilis. The molecular function of this small, probable integral membrane protein is unknown. [Cellular processes, Sporulation and germination].	3.35334e-14
NZ_AP017630.1\|WP_003451649.1\|2153372_2153930_-\|elongation-factor-P	gnl\|CDD\|234788	PRK00529, PRK00529, elongation factor P; Validated.	2.22205e-107
NZ_AP017630.1\|WP_096516515.1\|2151150_2151666_-\|stage-III-sporulation-protein-SpoAB	gnl\|CDD\|131880	TIGR02833, Stage_III_sporulation_protein_AB, stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB. [Cellular processes, Sporulation and germination].	3.71063e-76
NZ_AP017630.1\|WP_003451187.1\|2146513_2146921_-\|transcription-antitermination-factor-NusB	gnl\|CDD\|234686	PRK00202, nusB, transcription antitermination factor NusB.	2.5545e-50
NZ_AP017630.1\|WP_003451536.1\|2147513_2148011_-\|SpoIIIAH-like-family-protein	gnl\|CDD\|378918	pfam12685, SpoIIIAH, SpoIIIAH-like protein. Stage III sporulation protein AH (SpoIIIAH) is a protein that is involved in forespore engulfment. It forms a channel with SpoIIIAH that is open on the forespore end and closed (or gated) on the mother cell end. This allows sigma-E-directed gene expression in the mother-cell compartment of the sporangium to trigger the activation of sigma-G forespore-specific gene expression by a pathway of intercellular signaling. This family of proteins is found in bacteria, archaea and eukaryotes and so must have a wider function that in sporulation. Proteins in this family are typically between 174 and 223 amino acids in length.	3.45938e-23

>NZ_AP017630.1|WP_096516516.1|2151813_2152698_-|stage-III-sporulation-protein-AA
MKEIFAVLPEKINSCLKDKSNLNKLQEIRVKIGKPLNIVLDNTETIFNYVITREDIKAIIQKISNYSLYAFEEDIRQGYITIQGGHRVGLAGQCVIEDNSIKTIRNITSLNIRVCREIVGCSNSLMNSLVENNRVNNTLIISPPKCGKTTLLRDITRNISNGISQIGFKGKRTVVIDERSEIAACYNGIPQMNVGMRTDVYDNCIKSEGMMMAVRGLSPEVIICDEIGTYKDMEGLMMAYNSGVSIIATLHGRNVEELYRRPVFREIVENNIINKVVVLSAKKGIGTIEGIYNV
>NZ_AP017630.1|WP_096516515.1|2151150_2151666_-|stage-III-sporulation-protein-SpoAB
MKVFFLLIIVLLSSLIGYLYGEGFRNRLSQLRELKRALIDFENDIVYTYTPLPESIESIALKAKSPIKELFNEISFKLKNNEVENVYMAFKESINEHKKEMNLRNKDFEILLDLSKSLGETNVDGQIKIFNLAKEKLDIELEIAEDECNKNTKVYRYLGVAVGAMIAIFLV
>NZ_AP017630.1|WP_011592695.1|2150877_2151075_-|stage-III-sporulation-protein-AC
MSDLSLIFQIAGVGIVLVILDKVLEQSGKKEYATLANIVGVVIILTMMIQLISRLFSSVKSMFLF
>NZ_AP017630.1|WP_096516514.1|2150404_2150791_-|stage-III-sporulation-protein-AD
MDVVIQVISFVLISLFLYLVLKDNKSTFAVFLLLGAGIVIFLFVMPYVNEIIEFMQEIARESGMDSSYIAIVMKIIAIAYLSTFCSYICNDAGVTVLGKKVEFTGKIMILLLAIPIMANILNSILSIM
>NZ_AP017630.1|WP_096516513.1|2149221_2150394_-|stage-III-sporulation-protein-AE
MKKLINIILLSLIFVFCFNLKVLANDNLESSKEKIDNDSRIERFYDYINNLETEEDILGNMSAKEYIMNYLESGEDPITLKKIGASILSYIFRELNIVLKFIASILVIALLSALLKNLQDAFNIEDGVTQVAFFACYALLIMLLTKSFFISLNLGKEVLTSIIDFMNVIVPVIVMLIATSGGVTSAVTIDPIVLGAVSITPRIYTYFLFPLILAYFTLQFVNNLSSEFKIDRMCKFIKQAVMISQGFILTIFVGILTLRGMTADTLDAVAVKTVKFAVDNFVPIVGKAFSDAITTVAGYSLAMKSVITSLGVIVLIVIVIYPIIKIGLMAICFKLTSAVIEPVVDSKISSSVETVGEALFMIMSCIISVSIMFFIMASMMATAGNFIVGG
>NZ_AP017630.1|WP_096516512.1|2148656_2149214_-|stage-III-sporulation-protein-AF
MELLKNWISTLCVVIVIISIAHIILPNSSIKKHVKFAFSLIILSVMLSPIIGLLTMNKDIDETVFQDKISEVTSEAQEKKSLYDEEAILKSVEKNLEKSLKDEFYENEFEVNLIGKIDFDEVKFNIEKAEITVLDEKKVKRVDKVVVGKEKGNKEEKKDSFLEKIEKFVEKELEISHENIIVSYA
>NZ_AP017630.1|WP_096516511.1|2148036_2148642_-|stage-III-sporulation-protein-AG
MQGLKDKMSKILKQKNITNLIILLLLGIMFYLVVSYFTGVNNITKSEKTNLEKVSKEDMNSNSQKDSEVLSYQEKQEKDLERILGKINGVGSVDVVINFQSSEVKVPAVDNSSQKSTTEETDSEGGTRVNSQETDGDKIVMSNSSNGSEPVILKTEKPEVLGVMVVAEGAEDSKIKYEITKAISSLYNISVDKVNVLAMKK
>NZ_AP017630.1|WP_003451536.1|2147513_2148011_-|SpoIIIAH-like-family-protein
MNRKQAGIILTLLALIVCTGVLATRVNNQIKESMGEVPTAFGENDDNATETSSNYFYESRNLREQKDSKTIDNLKAIVEDKNTSAEQKEEAEKELTEKTMARDYETRIELSIKSKGYEDVICFIDGDNAKVVVKTNEELTQEKMVEIQDIVMNVSKVYDVDIEKK
>NZ_AP017630.1|WP_096516510.1|2147039_2147429_-|Asp23/Gls24-family-envelope-stress-response-protein
MNEMNRDEANLGIVNISDEVIGVVAGIAASEIDGILEINHNNSTGIGHKFSKKSLGKGIKVNVENGEAVIEIGVTVQYGIKIPDVVSQVQENVRRTVEAITGLKVALVNIYVQNIIILKQEDKNEILKK
>NZ_AP017630.1|WP_003451187.1|2146513_2146921_-|transcription-antitermination-factor-NusB
MNRVKSREYLLQLAYQMEITSETALETFNSFMENEDISKDDLDLAYIKSGLLGIEENKEKLDSLIESQLVKWKLNRISKVNLSILRISTYEILFAEDVPGKVSINEAIELCKKYSDNKSVSFINGVLDKVYKNMQ
>NZ_AP017630.1|WP_003451464.1|2152896_2153259_-|hypothetical-protein
MKDIKNNISNLLKAMDKNTELDKEFKDSLLNVISSLVDKVEELQVNVETLDENVNLLNDDLSGVQDELFEELTLEELEEYDDEYCEVVCDKCHKPIYIEKDILNRSESIPCPYCGNEFEV
>NZ_AP017630.1|WP_003451649.1|2153372_2153930_-|elongation-factor-P
MISGSDLRKGTTFELDGQVYTVIDFLHVKPGKGAAFVRTKLRNVIMGGVTDRTFNPTDKLQEAIIERKEMQYLYSDGELYYFMDQETFEQIPLNHEKVEDAIKFLKENMNAVIKFYKGEAFSVEAPNFVELLITECEPSVKGNTATTAMKTAVVETGATVMVPMFVEEGNTIRIDTRTGEYMERV
>NZ_AP017630.1|WP_096516517.1|2154100_2154448_-|hypothetical-protein
MKKLKLDITLANIFIVILFIQGIDLFYLRNYELPVLTSSIEERDLNTVLKNIEHKDSTVLKLENKDGWIGEILFTGSLEDLTSYVNLLKNNNIHIKNYKIEKSEELRCFLELKVV
>NZ_AP017630.1|WP_096516518.1|2154444_2154885_-|hypothetical-protein
MRSGVRRIYIKKYKNFLPIEYVEEHNKKIKKKLNMYILLLLVFNLFFYGKIKTENNKIENYLSKVKKSHREKSLDDEFLEGVKKLKRIIEDENILSLNLERKSFEVEVNSNYKSSVISDINKINGRVEDISLDETNNTYILKGELR
>NZ_AP017630.1|WP_096516519.1|2154853_2155456_-|hypothetical-protein
MLTKNLKINDTNDISRLTELKDKRIKIILLNEKIFIEILKVNRSCNIEEKIEKLIKDRFLNYTHLVHYEVLKYKKSLFLIVYFIGCDERFKNLLYERKQFALRIPELKNKNILSFNKVTFELKNLKISIYIKGKLILLKSIRDSNIIEAIEESTKSVEQDFNVSLKEFTFKIQKEYLTEEVREWFNGLKLNEIRGEENLY
>NZ_AP017630.1|WP_096517108.1|2155430_2155781_-|type-IV-pilin
MIVTILMDNSFQRRKELDRSFKIVGSNIDKNNQEEQFLKYMLKENILNKDNFQDLEFSLNNMKAEYSKKESILNIKNKDKTSGLFKESYYEIKVINDDIILSKRGNYEFVNKKLKD
>NZ_AP017630.1|WP_172861122.1|2155827_2156139_-|hypothetical-protein
MYLNHRFWDNMVEEINLNEDYIIVKFWREVPGTNGKLESIKDKIVIKGDKLYVDFNYTGNKGNPLHVLIENIENFNLVEKENLFYIKLKVKNKEERIYCYEKV
>NZ_AP017630.1|WP_096516521.1|2156273_2156783_-|type-II-secretion-system-protein
MKNSMKKKGYLLLDMVLALALISILFLGIGKNFSSYINNNYYIKEKIKIVEFMNSLAMEIKHNISFEDLRSIGSGIYKLDNLNVNDLINNDIKEILRKNLTLHNKKNDYLGWNINISHVDQYESSINIIYKNEKPYISENKEVKIYKFLEKYNQELDISPQEEEKRLIY
>NZ_AP017630.1|WP_096516522.1|2156801_2157230_-|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein
MYRKRKGFTLSEVIVYLGITSLILAIPTSFKIVKDRGYELKVEGEISKIHDFLIEAKQLSKKDNLSGKIVFDIAENKLRYQNKVRSTSLKLNEVKISNNLKNVIEITQMGMLNRSGTITITDKNKKRREITITTGLKKINVK
>NZ_AP017630.1|WP_096516523.1|2157222_2158242_-|type-II-secretion-system-F-family-protein
MFGFKDEASYICLNLSTYVKSGMPIGRSLELIKNTVKDKKYKESLKRIEKKVLNGEALSKAFKEEGNLYPDLMKDMIRIGEESGNLEEVLEKCAKNILAEKEIKNKIIKSLRYPVLLLIGLIIMIFCYITYILPQFIDMYELREDYGSKVMTLLNSYINFVEENPNVEVIVFCYFLCLLISIYLLFKVLSFEKILEKIEIYRMYYEIRILFLINMILNSGISLNNALSVFEESLSDVKLRKYIKSINEELIKGATLSSSIGKVNVISHVSKGFLITGEESGLFTKNIEELLKIREKDFDRVLNKTVGKIEPAMFIILGFVISAMMLLVLIPTFEGMKYV

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Crispr_ID: NZ_AP017630_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP017630_4

2593656-2593739

Orphan

Consensus_repeat	Method
ATTAGAATTTTATTTTATTAAATAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP017630_4

>merge|NZ_AP017630|4|2593656-2593739|CRISPRCasFinder
ATTAGAATTTTATTTTATTAAATACCTCCTTGTCTTAGTCATCTTATCTGTTGCACCTTATTAGAATTCTATTTTATTAAATAC

>NZ_AP017630|4|4|2593656-2593739|CRISPRCasFinder
ATTAGAATTTTATTTTATTAAATAC	CTCCTTGTCTTAGTCATCTTATCTGTTGCACCTT
ATTAGAATTCTATTTTATTAAATAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP017630.1\|WP_096516792.1\|2590574_2591582_-\|CotS-family-spore-coat-protein	unknown	unknown	gnl\|CDD\|131952
NZ_AP017630.1\|WP_096516790.1\|2588839_2589868_-\|CotS-family-spore-coat-protein	unknown	unknown	gnl\|CDD\|131952
NZ_AP017630.1\|WP_096516798.1\|2595953_2597078_-\|ethanolamine-utilization-protein-EutH	unknown	unknown	gnl\|CDD\|237906
NZ_AP017630.1\|WP_096516797.1\|2594799_2595828_+\|FAD:protein-FMN-transferase	unknown	unknown	gnl\|CDD\|224394
NZ_AP017630.1\|WP_096516791.1\|2589883_2590567_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017630.1\|WP_096516796.1\|2594321_2594765_+\|FMN-binding-protein	unknown	unknown	gnl\|CDD\|227275
NZ_AP017630.1\|WP_096516799.1\|2597238_2597568_-\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99906
NZ_AP017630.1\|WP_003462688.1\|2584934_2585171_-\|Veg-family-protein	unknown	unknown	gnl\|CDD\|377636
NZ_AP017630.1\|WP_096516786.1\|2583011_2584574_-\|DUF3794-domain-containing-protein	unknown	unknown	gnl\|CDD\|212030
NZ_AP017630.1\|WP_096516802.1\|2600339_2601359_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	unknown	unknown	gnl\|CDD\|236585
NZ_AP017630.1\|WP_096516801.1\|2599305_2600325_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_AP017630.1\|WP_096516788.1\|2586416_2587421_-\|CotS-family-spore-coat-protein	unknown	unknown	gnl\|CDD\|131952
NZ_AP017630.1\|WP_096516803.1\|2601500_2602133_+\|RusA-family-crossover-junction-endodeoxyribonuclease	unknown	unknown	gnl\|CDD\|377564
NZ_AP017630.1\|WP_096516794.1\|2593088_2593619_-\|Gx-transporter-family-protein	unknown	unknown	gnl\|CDD\|377839
NZ_AP017630.1\|WP_096516800.1\|2597809_2599189_-\|trypsin-like-peptidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|273938
NZ_AP017630.1\|WP_096516804.1\|2602141_2602702_+\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|239945
NZ_AP017630.1\|WP_096516793.1\|2591710_2592856_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340838
NZ_AP017630.1\|WP_096516789.1\|2587529_2588657_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340838
NZ_AP017630.1\|WP_096516787.1\|2585333_2586221_-\|sporulation-peptidase-YabG	unknown	unknown	gnl\|CDD\|377528
NZ_AP017630.1\|WP_096516795.1\|2593810_2594182_-\|NusG-domain-II-containing-protein	unknown	unknown	gnl\|CDD\|377759

Protein	Function_ID	Function_description	E-value
NZ_AP017630.1\|WP_096516792.1\|2590574_2591582_-\|CotS-family-spore-coat-protein	gnl\|CDD\|131952	TIGR02906, Spore_coat_protein_S, spore coat protein, CotS family. Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers. [Cellular processes, Sporulation and germination].	6.8028e-121
NZ_AP017630.1\|WP_096516790.1\|2588839_2589868_-\|CotS-family-spore-coat-protein	gnl\|CDD\|131952	TIGR02906, Spore_coat_protein_S, spore coat protein, CotS family. Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers. [Cellular processes, Sporulation and germination].	2.65972e-108
NZ_AP017630.1\|WP_096516798.1\|2595953_2597078_-\|ethanolamine-utilization-protein-EutH	gnl\|CDD\|237906	PRK15086, PRK15086, ethanolamine utilization protein EutH; Provisional.	1.22269e-131
NZ_AP017630.1\|WP_096516797.1\|2594799_2595828_+\|FAD:protein-FMN-transferase	gnl\|CDD\|224394	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism].	3.59868e-117
NZ_AP017630.1\|WP_096516796.1\|2594321_2594765_+\|FMN-binding-protein	gnl\|CDD\|227275	COG4939, COG4939, Major membrane immunogen, membrane-anchored lipoprotein [Function unknown].	9.36135e-21
NZ_AP017630.1\|WP_096516799.1\|2597238_2597568_-\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99906	cd05564, PTS_IIB_chitobiose_lichenan, PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	7.11795e-42
NZ_AP017630.1\|WP_003462688.1\|2584934_2585171_-\|Veg-family-protein	gnl\|CDD\|377636	pfam06257, VEG, Biofilm formation stimulator VEG. VEG is a family that is highly conserved among Gram-positive bacteria. It stimulates biofilm formation through inducing transcription of the tapA-sipW-tasA operon. The products of this operon are resposible for production of the amyloid fibre (TasA) component of the biofilm. Veg or a Veg-induced protein acts as an antirepressor of SinR - part of the major overall biofilm transcriptional control system - to regulate and stimulate biofilm formation. Veg is transcribed at high levels during both exponential growth and sporulation.	1.63833e-25
NZ_AP017630.1\|WP_096516786.1\|2583011_2584574_-\|DUF3794-domain-containing-protein	gnl\|CDD\|212030	cd00118, LysM, Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.	8.80184e-14
NZ_AP017630.1\|WP_096516802.1\|2600339_2601359_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	gnl\|CDD\|236585	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD.	0
NZ_AP017630.1\|WP_096516801.1\|2599305_2600325_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	6.85698e-16
NZ_AP017630.1\|WP_096516788.1\|2586416_2587421_-\|CotS-family-spore-coat-protein	gnl\|CDD\|131952	TIGR02906, Spore_coat_protein_S, spore coat protein, CotS family. Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers. [Cellular processes, Sporulation and germination].	1.59789e-117
NZ_AP017630.1\|WP_096516803.1\|2601500_2602133_+\|RusA-family-crossover-junction-endodeoxyribonuclease	gnl\|CDD\|377564	pfam05866, RusA, Endodeoxyribonuclease RusA. This family consists of several bacterial and phage Holliday junction resolvase (RusA) like proteins. The RusA protein of Escherichia coli is an endonuclease that can resolve Holliday intermediates and correct the defects in genetic recombination and DNA repair associated with inactivation of RuvAB or RuvC.	2.97623e-14
NZ_AP017630.1\|WP_096516794.1\|2593088_2593619_-\|Gx-transporter-family-protein	gnl\|CDD\|377839	pfam07456, Hpre_diP_synt_I, Heptaprenyl diphosphate synthase component I. This family contains component I of bacterial heptaprenyl diphosphate synthase (EC:2.5.1.30) (approximately 170 residues long). This is one of the two dissociable subunits that form the enzyme, both of which are required for the catalysis of the biosynthesis of the side chain of menaquinone-7.	2.55127e-45
NZ_AP017630.1\|WP_096516800.1\|2597809_2599189_-\|trypsin-like-peptidase-domain-containing-protein	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	3.07013e-95
NZ_AP017630.1\|WP_096516804.1\|2602141_2602702_+\|acyl-CoA-thioesterase	gnl\|CDD\|239945	cd04501, SGNH_hydrolase_like_4, Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.	1.18384e-67
NZ_AP017630.1\|WP_096516793.1\|2591710_2592856_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340838	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. MtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.	1.58711e-97
NZ_AP017630.1\|WP_096516789.1\|2587529_2588657_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340838	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. MtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.	1.34598e-110
NZ_AP017630.1\|WP_096516787.1\|2585333_2586221_-\|sporulation-peptidase-YabG	gnl\|CDD\|377528	pfam05582, Peptidase_U57, YabG peptidase U57. YabG is a protease involved in the proteolysis and maturation of SpoIVA and YrbA proteins, conserved with the cortex and/or coat assembly by Bacillus subtilis.	3.00649e-167
NZ_AP017630.1\|WP_096516795.1\|2593810_2594182_-\|NusG-domain-II-containing-protein	gnl\|CDD\|377759	pfam07009, NusG_II, NusG domain II. This domain is found in some NusG proteins where it forms domain II. However most NusG proteins are missing this domain. In other cases this domain is found in isolation. The function of this domain is unknown.	3.49461e-31

>NZ_AP017630.1|WP_096516794.1|2593088_2593619_-|Gx-transporter-family-protein
MKTKKLIYIGVLVAQALVLYIFESMIPMPFITPGAKLGLANLIVVIGLYTLDNYKECLWLIFLKLILSTLIMGSVSTFIFGLGGTILSFLGMILTKNILKEKVSAIGVSTVGGVFHNLGQLIITSIVIKNIGILSYLPFLSIAGIGTGIFIGITANYLLKHMKALNNLDYHRNMAN
>NZ_AP017630.1|WP_096516793.1|2591710_2592856_+|glycosyltransferase-family-4-protein
MYNLIDARGATWYRGTGIGTYTYNLLTNILKLDKDSSYDLLCSGEKIPEFESKNTKIIMSSRKHQRFFEDYYIPSYGIKEHIDLLHLPQNGLGLSSEGNFAKLVTIHDLIPYILPETVGKGYLKKFLQSMPEIIDNSTGIITVSEYSKSDILRFFPHFPAENIFVTPLAANENYKPLDKEKCLFDVNKRFNFNGPFIMYIGGFSLRKNVKGLVDAFNNIHKNIDENYKLLIVGGLRDEGLKLKAYTESLPIKDKVIFTGFIEDEYLPTLYNATTLFVYPSLYEGFGLPPLEAMSCKTAVLTSNITSIPEVVPFKESLVNPNNPNELSLKLENLLNDSKLRNNLEELCFERSKEFTWEKTAKKTLDVYKKVIEISKNSLIKA
>NZ_AP017630.1|WP_096516792.1|2590574_2591582_-|CotS-family-spore-coat-protein
MEHDYIKDKILLNYGIEIKEVIKVKNTYKVITSDEEYCLKVIKYQYPHFYFIVSAQKHLMKNGFNSIPKILDTIDGKDYIKLGDKLAYLTHWVKCRECDYKNKLDLSLAAKKLSELHNSSEGFVINRSLKPRIAWCKWYKIFETRGEEILDFKKRIYQKAYMSDFDKLYLSIMDEELKRVERTLFHIKTSGYFDYMKKEVKKLGFCHHDYANHNVLLLENNEINIIDFDYCILDSHLHDLSSLCIRTMKEGSWDLNLFKYIIESYSKNKEVRNEEFSIMASFIEFPQAYWQLGLQYYWEQQPWEEEHFLKKLGKYEKDREFRQNFVDELSNFTLR
>NZ_AP017630.1|WP_096516791.1|2589883_2590567_-|hypothetical-protein
MSEKLELFLRKNNIEVLPRKEIEREKRELRFYDPLEYLNTINEIHKEFLKEENRIRFKFRNDIWKQVQIFKLWSRRVERLEESNGLINKALDASKKSLDCIYNINYKELIRRAMEREEVCIGRIYYEVKNGEKRIFIKNTEDIKFNMVEEDYYIYLKKIRGNYKDELKDLLLEVVKKENLDFKSYVYINSLINYPYNSMRYLQNNYIKDLKIKSNELEELLLKDYLI
>NZ_AP017630.1|WP_096516790.1|2588839_2589868_-|CotS-family-spore-coat-protein
MNKIRYKDEKYLCRYDLDIKLFEALGLDIFDLRPNRNVFLLDTKQGKKILKMINYDDDRLNFIIHSTDYLRERYEDILKINKLPNGEWRFKWKGNDYILLDYFEGTEFNIANPIELEIITEAVAKLHNAGLGIQEATSKEMNEKNSELFKLKDYFKNSKKDLEKLKEIVGSYKYKNEFDEIFINEVDYHLSDIETCIDLLEKSKYDDLCRDKEKITLCHNDLAYHNILFNQNKVSFIDFDYCNINLRVIDLCNFIIKSIKRFGFSLEMYDSIIEKYDKLNNLSKEEKELIYIYLRFPHDFYTVSMQYYYKLKDWRYESFLNKLERKLEYTKEKEILLNHINK
>NZ_AP017630.1|WP_096516789.1|2587529_2588657_+|glycosyltransferase-family-4-protein
MKICIDGRAATLYRGTGIGNYTYEIINNLHQIDFLNEYNILTPEASSLKLPKKNNFNYLSSSTNDKKNFWEFINTQNPKENIIGDIYHIPQNGIGFSKPKDIKTVITLHDIIPMKMPDTVSETFLKIFNENIQNILDNSDGIITVSNFSKEDISKTFSYPKEKIFVTHLAAEEIYTPLNKFHSSQYLKKHYGIDRDFLLYVGGFSPRKNILGLIEAFNLVKNSYKRDLKLVIIGTKGPSYEIYRKKVDELNLSSSVIFTGFIPIEDMPIFYSASKALVYPSFYEGFGLPPIECMACGTPVIASNLTSMPEVCQDAALLVDPYDVDEIKENILTLLNNHKFYSLMIYKGLSHSSKFNWKKTAYNTLEIYKHISSQT
>NZ_AP017630.1|WP_096516788.1|2586416_2587421_-|CotS-family-spore-coat-protein
MMREFEIERQFDIKIEKLKPNKGIYYLKSNKGDRCLKRINYGTQKLLFVYGAKEHLAKNGFENVDRYFLNIEGEPYALVNEDLYTLSNWIKGRECDFTNIEEVKLAAKKLAELHEASKGYDPPENSKLKSDLGRWPYLMEKRGKALEKMRGMARKKNLKKDFDIIYIKNVDFYKELAIRAAKILNNSKYLSLCEEAEAEKVFCHHDYTYHNIIIGEDNEVYIIDFDYCKREIRTYDIANFMKKVLKRVDWNIEYAEAIIDAYNTVSPLREEEYEVLYAYLLFPQRYWRLANRYYYNEVMWGQNIFINKINNIINEKESYMKFIEEFKSKYNQVG
>NZ_AP017630.1|WP_096516787.1|2585333_2586221_-|sporulation-peptidase-YabG
MKVGDLVVRKSYSKDITFKIIDIKENEEGITYILKGLHIRIIADSKGEDLEKVEDDFAGDKDRSFDSKINDIIKKVILSREQKNNQFMTRGSEEDNINRVEKEKGLVFGRPGRILHIDGDPSYMETCLKVYKQLNLNAVGIAIAEREQPLKILSLVKEYNPDIVVLTGHDGVLKDSKGMLDLNNYRNSKYFIESVKILRSYNSSYDELVIFAGACQSCYESILEAGANFASSPNRVLIHCLDPVLVCERVAYTRIDEIVSIKDVIENTITGIKGVGGLQTRGKYREGYPKSLYLN
>NZ_AP017630.1|WP_003462688.1|2584934_2585171_-|Veg-family-protein
MSTRLTLNSIRKSIEDHVGEKVKLRANGGRKKILENEGILESVHPSIFVVRLQKDTQRKVTYSYSDVLTKTVQLDFVG
>NZ_AP017630.1|WP_096516786.1|2583011_2584574_-|DUF3794-domain-containing-protein
MVNLDIIKESLGFEKVLSENSLDIPFREEYLIPDTQPDVYDVLSVDTKVYVLNREVQSDRILLEYEVECNVMYLAREEEGLGINSVVYKEKNSSFIDIAGAEHSMMCDMECDLEHIDANIINERKIRVEGKLRTKYRVYKEEKIDVVKELDGLGDLQIKRKPESIEKNITNMVCSMSGELPINVGMDKPQIGKIIKCGYMLHRQEIKLGEDKVQASCLAKINVLYRAYDSRDVVALEEDLYLSNDEEVVGVNSDMNCNGYFEIKGHDVKISQNDLGESRIIDVNLSVDANVAISKLEFAETVEDLYSPTQNIMPLKEVCKINMCVSENSNESVIKGNIDLGKNGVDATQTVDCKGKIVDMESYFMDQKVVIKGNLAVESIYKTTDEDKGLNKVSGEIPFEVALDMPNSQSGMTFDTKANLEDLQCSIEGNSIAVKAVVYFYGKCSDVFDKEYVKDIEQNDDTVEKKSSITIYTIQKGDTLWSLAKKYKTTIDTLVKLNDIEDPDSIYAGDKIMIPGRAVL
>NZ_AP017630.1|WP_096516795.1|2593810_2594182_-|NusG-domain-II-containing-protein
MKKWDLIIIIVLILLSLMPIRLLISSNNSGDLKRVIISVNGEEYESLELKENVNEIIKIEEGLGVNEICIKEREVYMNHSNCTDKVCMRQGKISKVGESIVCLPNRVFIEIKGEEEAECILSY
>NZ_AP017630.1|WP_096516796.1|2594321_2594765_+|FMN-binding-protein
MKKKFFALILSTLVASSFIACGASNNSKLKDGDYTVETAKADDHGYKAKLSIKVSKGKITEAKYNEFNGETNVMKREDKDYNEKMTGVSGIGPAEYEPQLEKSLIEKQSSDIDVITGATSSSNQFKKLAEKVLKNAEEGKTEATLVD
>NZ_AP017630.1|WP_096516797.1|2594799_2595828_+|FAD:protein-FMN-transferase
MENLRHICIFICMILTFTLNGCSIKKEPISKSSFFMGTIVNITLYDKFDEGIIDKVFNKISEIESLLSLNIQNSEINKINEKSGIEPVKVTKTTFDIIEKSLEYSKASKGNFDITIGPLVKLWGIGSEDAKIPDDNEILDTIKLINYENIILDKENTTVFLKEENMVLDLGAIAKGYIADLISDILIEEGVSKAIIDLGGNIFALGEKNKNENWTIGIQNPFENRGAPLGTLSICNKSVVTSGIYERYLEINNTKYHHILNPKTGYPYDNNLASVTIVSSKSIDGDALSTSTFGMGLSDGLELIESLPEIEGIFVTKSKEIFISKGLKNNFKLLDNSFKIAN
>NZ_AP017630.1|WP_096516798.1|2595953_2597078_-|ethanolamine-utilization-protein-EutH
MEKLVLGIIGIFFVISGFDYINNNKLGLGDKFKEGMISMGSIAISMVGIYSLSPLIGEGIGFLLTPISNFIGIDSSIFPSMFLAVDMGALGIAESLSSNIHMYWISGVIIASTLGATISFSIPLALGIIDEKYLEDLTTGLLYGIMTLPIAPIVAGLFLGVDIKLLLFNILPLIIFAILLAVFMNRFKEKTVKFFIKLGKLIQLVSILGLLVLGFLSIVGIKPIGSILPIDEALSVVGKIAIFLGGAYPLINFITEKFSKVLSKIGEKINIDEFSIAAFLGTLASNIILFQSFSKMSSKGRIALTAFSVSGAFVIGGQLGFVSLKTPEIINVYIASKLIAGVTAMVLALVVHRKTEENINEESENEENLPVLES
>NZ_AP017630.1|WP_096516799.1|2597238_2597568_-|PTS-sugar-transporter-subunit-IIB
MKKIVLLCTLGMSTSLLVSKMRKAAKELGVNCSIIAVGEYEFKKYEKEADIIMLGPQVRYLFNSLRKKVNSNIPITFINSSDYGTMNGNKILNQALELMDNKELSKNNL
>NZ_AP017630.1|WP_096516800.1|2597809_2599189_-|trypsin-like-peptidase-domain-containing-protein
MSDFNKKDENLNDYFGFDDKENKTLDSEKDIKDKVNTESNNDTKQTNIDETQHLNIDNEINSKEEVKREENTESSHEKAKGVKDSNDNSKNKKVKKKSGFKRGIALIAGAVIVAILGGAIGAGGVYCAFKNSIPVSTLENNSNTSVNPPSFKGEDGALTVPQVVEKVTPAVVGVSTKSLVRDQFFNVKEQEGLGSGFIINEEGYVVTNYHVINGAQEVKVIFSDGKEVNAKVINYDPERDIAVIKITDDVKMPGIAELGDSSTVKAGEEVIAIGNPLGKEFSSTVTKGIVSSPNRKMKTENGNVLDYIQTDAAINPGNSGGPLINSKGEVIGINTAKKVGEDIEGIGFAIPINEVKTRLGSLSKPILKLGITARTVTPELAKENKLEEGVYVVGVQEFSPAEKAGLKIGDLIIEFGGKRVKTLEELNQAKSQYNDGDSVPVEIIRDGKKVNLNLTLVAN
>NZ_AP017630.1|WP_096516801.1|2599305_2600325_-|alpha/beta-hydrolase
MKFIPYSNGFHKMNKNIEIKPINVIRNIFIFILALVFIGFAYQMIVNKIDSKKIEPDTKYVRIDSKKNYYNFQGESKPTIIMSSDIGLGLSEWSKVQELIEKEYGYRTFSYDRSGYGFSESVKDDDIKEQAQHLRMILKKSGIGGPYILVGEGYGGLVMCNFAKLYPDLVQGVILVDPISEEALRGNKDYMNQYSSQKISRFIQKYGSYFGLTSIMNKFGMLKNPKGLEENLNNENLKVYNTLRTKSDYNSGYYSELTNILDQSSDSQKSGLLEGKPLSIIVNDNAFTKEQEALKKLTSEDKVQVINAKNKTDVISLEKPELFLDSIRFIQDNSVEEQN
>NZ_AP017630.1|WP_096516802.1|2600339_2601359_-|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD
MDKKVILAIESSCDETAAAVVVNGREVLSNIISSQIDIHTKFGGVVPEVASRKHIEAINAVVEEALEVAGVTFDDIDAIAVTYGPGLVGALLVGLQYAKGLAYSLDKPLIGVNHIEGHISANFIDHKDLEPPFVCLVVSGGHTFVVHVEDYGKFEIIGETRDDAAGEAFDKVARAVGLGYPGGPKIDKLAKEGNSEAIKFPKANFHDDTLDFSFSGVKSAVLNYLNKMEMKNEEINKADVVASFQKAVVEVLTDNAIKTCKMRKADKIAIAGGVASNSALRENLLREGEKRGIKVLFPSPILCTDNAAMIGSAAYFELLKGNVSKMSLNAKPNLRLGER
>NZ_AP017630.1|WP_096516803.1|2601500_2602133_+|RusA-family-crossover-junction-endodeoxyribonuclease
MNSYAKVIVKGSPITKSNFKLSNSQGRAILPSNSGKYHDRYALYEEQIAYEARIQNPNVILEESLIAVLKVYYKSSKRHPDTGNITKSIFDGIEKSGLIINDMQIRRIITEEFYDKENPRFELELFGESSYSFNYEINKREEKVEKLLYSPPPNKKRKTTNTNKEQKSSSINKETSNKVCAICNKAIIGNDFVTANKGTTIICKKCLLRM
>NZ_AP017630.1|WP_096516804.1|2602141_2602702_+|acyl-CoA-thioesterase
MNIICIGDSLTFGYGVGQENSWVSLLNDEKNKFINKGVNGDTSTGILSRIYEILKSNDSKICLIMCGSNDILMNKSIDSIIDNIRLMTDDCYSLNIKPIILSPPKIYSDLAIKRWDSSIDYEKCNSKLENYSKELDLFCEKNNLLFIDLNSNLPFDPLNYTDGLHLSIKGNILVSNLVKMSLKNYL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_AP017630_2	2.3\|1094684\|36\|NZ_AP017630\|CRISPRCasFinder,CRT	1094684-1094719	36	JQ660954	Clostridium phage PhiS63, complete genome	24963-24998	0	1.0
NZ_AP017630_2	2.4\|1094749\|37\|NZ_AP017630\|CRISPRCasFinder,CRT	1094749-1094785	37	JQ660954	Clostridium phage PhiS63, complete genome	33386-33422	0	1.0
NZ_AP017630_2	2.74\|1099323\|37\|NZ_AP017630\|CRISPRCasFinder,CRT	1099323-1099359	37	NZ_MK275623	Clostridium perfringens strain JXJA17 plasmid p5, complete sequence	10994-11030	0	1.0
NZ_AP017630_2	2.53\|1097953\|36\|NZ_AP017630\|CRISPRCasFinder,CRT	1097953-1097988	36	NZ_MK275620	Clostridium perfringens strain JXJA17 plasmid p2, complete sequence	26259-26294	1	0.972
NZ_AP017630_2	2.56\|1098148\|36\|NZ_AP017630\|CRISPRCasFinder,CRT	1098148-1098183	36	NC_008265	Clostridium phage phiSM101, complete genome	16817-16852	1	0.972
NZ_AP017630_2	2.28\|1096314\|36\|NZ_AP017630\|CRISPRCasFinder,CRT	1096314-1096349	36	NZ_MK275620	Clostridium perfringens strain JXJA17 plasmid p2, complete sequence	25158-25193	2	0.944
NZ_AP017630_2	2.19\|1095727\|36\|NZ_AP017630\|CRISPRCasFinder,CRT	1095727-1095762	36	KX171213	Staphylococcus phage vB_SscM-2, complete genome	7467-7502	6	0.833
NZ_AP017630_2	2.19\|1095727\|36\|NZ_AP017630\|CRISPRCasFinder,CRT	1095727-1095762	36	NC_047767	Staphylococcus phage vB_SscM-1, complete genome	7467-7502	6	0.833
NZ_AP017630_2	2.53\|1097953\|36\|NZ_AP017630\|CRISPRCasFinder,CRT	1097953-1097988	36	MH552514	Siphoviridae sp. isolate ctba45, complete genome	24473-24508	6	0.833
NZ_AP017630_2	2.6\|1094880\|36\|NZ_AP017630\|CRISPRCasFinder,CRT	1094880-1094915	36	NC_031055	Bacillus phage PfEFR-5, complete genome	40064-40099	7	0.806
NZ_AP017630_2	2.6\|1094880\|36\|NZ_AP017630\|CRISPRCasFinder,CRT	1094880-1094915	36	KT725776	Bacillus phage vB_BceS-MY192, partial genome	13318-13353	7	0.806
NZ_AP017630_2	2.6\|1094880\|36\|NZ_AP017630\|CRISPRCasFinder,CRT	1094880-1094915	36	NC_048641	Bacillus phage PfEFR-4, complete genome	39467-39502	7	0.806
NZ_AP017630_2	2.19\|1095727\|36\|NZ_AP017630\|CRISPRCasFinder,CRT	1095727-1095762	36	KC595513	Bacillus phage Shanette, complete genome	9348-9383	7	0.806
NZ_AP017630_2	2.19\|1095727\|36\|NZ_AP017630\|CRISPRCasFinder,CRT	1095727-1095762	36	NC_028982	Bacillus phage JL, complete genome	9160-9195	7	0.806
NZ_AP017630_2	2.40\|1097099\|36\|NZ_AP017630\|CRISPRCasFinder,CRT	1097099-1097134	36	NZ_CP045273	Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence	529732-529767	7	0.806
NZ_AP017630_2	2.43\|1097296\|35\|NZ_AP017630\|CRISPRCasFinder,CRT	1097296-1097330	35	KT997854	Uncultured Mediterranean phage uvDeep-CGR2-AD10-C281, complete genome	28352-28386	7	0.8
NZ_AP017630_2	2.27\|1096249\|36\|NZ_AP017630\|CRISPRCasFinder,CRT	1096249-1096284	36	MT001829	Salmonella phage SE_PL, complete genome	327960-327995	9	0.75
NZ_AP017630_2	2.27\|1096249\|36\|NZ_AP017630\|CRISPRCasFinder,CRT	1096249-1096284	36	MK773491	Salmonella phage 7t3, complete genome	20770-20805	9	0.75
NZ_AP017630_2	2.27\|1096249\|36\|NZ_AP017630\|CRISPRCasFinder,CRT	1096249-1096284	36	MK268344	Salmonella phage Munch, complete genome	306405-306440	9	0.75
NZ_AP017630_2	2.53\|1097953\|36\|NZ_AP017630\|CRISPRCasFinder,CRT	1097953-1097988	36	NZ_AP014824	Geminocystis sp. NIES-3709 plasmid pGM3709_03, complete sequence	47767-47802	9	0.75
NZ_AP017630_2	2.57\|1098213\|36\|NZ_AP017630\|CRISPRCasFinder,CRT	1098213-1098248	36	KY744240	Weissella phage PWc, complete genome	28050-28085	9	0.75
NZ_AP017630_2	2.72\|1099192\|37\|NZ_AP017630\|CRISPRCasFinder,CRT	1099192-1099228	37	NC_018687	Bacillus thuringiensis MC28 plasmid pMC189, complete sequence	39431-39467	9	0.757
NZ_AP017630_2	2.15\|1095466\|36\|NZ_AP017630\|CRISPRCasFinder,CRT	1095466-1095501	36	NC_025179	Escherichia coli plasmid pC59-153, complete sequence	89368-89403	10	0.722
NZ_AP017630_2	2.15\|1095466\|36\|NZ_AP017630\|CRISPRCasFinder,CRT	1095466-1095501	36	NZ_CP047577	Escherichia coli strain 94EC plasmid p94EC-1, complete sequence	29434-29469	10	0.722
NZ_AP017630_2	2.15\|1095466\|36\|NZ_AP017630\|CRISPRCasFinder,CRT	1095466-1095501	36	NC_020271	Escherichia coli O25b:H4-ST131 str. EC958 strain ST131 plasmid pJIE186-2, complete sequence	41433-41468	10	0.722
NZ_AP017630_2	2.15\|1095466\|36\|NZ_AP017630\|CRISPRCasFinder,CRT	1095466-1095501	36	NZ_CP010127	Escherichia coli strain C8 plasmid B, complete genome	26110-26145	10	0.722
NZ_AP017630_2	2.15\|1095466\|36\|NZ_AP017630\|CRISPRCasFinder,CRT	1095466-1095501	36	NZ_CP019055	Escherichia coli strain CRE1540 plasmid p1540-4, complete sequence	127432-127467	10	0.722
NZ_AP017630_2	2.15\|1095466\|36\|NZ_AP017630\|CRISPRCasFinder,CRT	1095466-1095501	36	NZ_AP017611	Escherichia coli strain 20Ec-P-124 plasmid pMRY16-002_1, complete sequence	58127-58162	10	0.722
NZ_AP017630_2	2.15\|1095466\|36\|NZ_AP017630\|CRISPRCasFinder,CRT	1095466-1095501	36	NZ_CP031107	Escherichia coli strain AMSCJX02 plasmid pAMSC2, complete sequence	73864-73899	10	0.722
NZ_AP017630_2	2.15\|1095466\|36\|NZ_AP017630\|CRISPRCasFinder,CRT	1095466-1095501	36	NZ_MG825378	Escherichia coli strain 1108 plasmid p1108-IncFIB, complete sequence	63811-63846	10	0.722
NZ_AP017630_2	2.43\|1097296\|35\|NZ_AP017630\|CRISPRCasFinder,CRT	1097296-1097330	35	MN694165	Marine virus AFVG_250M579, complete genome	20580-20614	10	0.714
NZ_AP017630_2	2.53\|1097953\|36\|NZ_AP017630\|CRISPRCasFinder,CRT	1097953-1097988	36	NZ_LR214986	Mycoplasma cynos strain NCTC10142 plasmid 13	570874-570909	10	0.722
NZ_AP017630_2	2.53\|1097953\|36\|NZ_AP017630\|CRISPRCasFinder,CRT	1097953-1097988	36	NC_048709	Vibrio phage YC, complete genome	124122-124157	10	0.722
NZ_AP017630_2	2.72\|1099192\|37\|NZ_AP017630\|CRISPRCasFinder,CRT	1099192-1099228	37	NZ_CP015630	Borrelia turicatae strain BTE5EL plasmid lp159	50357-50393	10	0.73
NZ_AP017630_2	2.73\|1099258\|36\|NZ_AP017630\|CRISPRCasFinder,CRT	1099258-1099293	36	MT774401	CrAssphage cr6_1, complete genome	58450-58485	10	0.722

1. spacer 2.3|1094684|36|NZ_AP017630|CRISPRCasFinder,CRT matches to JQ660954 (Clostridium phage PhiS63, complete genome) position: , mismatch: 0, identity: 1.0

acttagataaataagattgacttatctttatttttt	CRISPR spacer
acttagataaataagattgacttatctttatttttt	Protospacer
************************************

2. spacer 2.4|1094749|37|NZ_AP017630|CRISPRCasFinder,CRT matches to JQ660954 (Clostridium phage PhiS63, complete genome) position: , mismatch: 0, identity: 1.0

cataatagaattgaatgatgactttggtaaagctttg	CRISPR spacer
cataatagaattgaatgatgactttggtaaagctttg	Protospacer
*************************************

3. spacer 2.74|1099323|37|NZ_AP017630|CRISPRCasFinder,CRT matches to NZ_MK275623 (Clostridium perfringens strain JXJA17 plasmid p5, complete sequence) position: , mismatch: 0, identity: 1.0

attataattttaataaaagatgttttaaatagagaag	CRISPR spacer
attataattttaataaaagatgttttaaatagagaag	Protospacer
*************************************

4. spacer 2.53|1097953|36|NZ_AP017630|CRISPRCasFinder,CRT matches to NZ_MK275620 (Clostridium perfringens strain JXJA17 plasmid p2, complete sequence) position: , mismatch: 1, identity: 0.972

atagatatctattatttttaataataatttttcttt	CRISPR spacer
ataaatatctattatttttaataataatttttcttt	Protospacer
***.********************************

5. spacer 2.56|1098148|36|NZ_AP017630|CRISPRCasFinder,CRT matches to NC_008265 (Clostridium phage phiSM101, complete genome) position: , mismatch: 1, identity: 0.972

gtatattggaccgagtgtttggaaggttggagcttc	CRISPR spacer
gtatattgggccgagtgtttggaaggttggagcttc	Protospacer
*********.**************************

6. spacer 2.28|1096314|36|NZ_AP017630|CRISPRCasFinder,CRT matches to NZ_MK275620 (Clostridium perfringens strain JXJA17 plasmid p2, complete sequence) position: , mismatch: 2, identity: 0.944

ttagtaatattagtattatttgtattacttaaatat	CRISPR spacer
ttagtattattagtattattagtattacttaaatat	Protospacer
****** ************* ***************

7. spacer 2.19|1095727|36|NZ_AP017630|CRISPRCasFinder,CRT matches to KX171213 (Staphylococcus phage vB_SscM-2, complete genome) position: , mismatch: 6, identity: 0.833

-ttaaatgaaaataaaaggagattgattaaaatgagt	CRISPR spacer
atttaac-aaaacaaaaggagattgataaaaatgatt	Protospacer
 ** **. ****.************** ******* *

8. spacer 2.19|1095727|36|NZ_AP017630|CRISPRCasFinder,CRT matches to NC_047767 (Staphylococcus phage vB_SscM-1, complete genome) position: , mismatch: 6, identity: 0.833

-ttaaatgaaaataaaaggagattgattaaaatgagt	CRISPR spacer
atttaac-aaaacaaaaggagattgataaaaatgatt	Protospacer
 ** **. ****.************** ******* *

9. spacer 2.53|1097953|36|NZ_AP017630|CRISPRCasFinder,CRT matches to MH552514 (Siphoviridae sp. isolate ctba45, complete genome) position: , mismatch: 6, identity: 0.833

atagatatct-attatttttaataataatttttcttt	CRISPR spacer
-tacattcctcattatttttaattattatttttcttt	Protospacer
 ** ** .** ************ ** **********

10. spacer 2.6|1094880|36|NZ_AP017630|CRISPRCasFinder,CRT matches to NC_031055 (Bacillus phage PfEFR-5, complete genome) position: , mismatch: 7, identity: 0.806

ttaaataatccttttgaaaatatatgggacaaaatt-	CRISPR spacer
caaaataatccttttgaaattatatagg-cataatgc	Protospacer
. ***************** *****.** ** ***

11. spacer 2.6|1094880|36|NZ_AP017630|CRISPRCasFinder,CRT matches to KT725776 (Bacillus phage vB_BceS-MY192, partial genome) position: , mismatch: 7, identity: 0.806

ttaaataatccttttgaaaatatatgggacaaaatt-	CRISPR spacer
caaaataatccttttgaaattatatagg-cataatgc	Protospacer
. ***************** *****.** ** ***

12. spacer 2.6|1094880|36|NZ_AP017630|CRISPRCasFinder,CRT matches to NC_048641 (Bacillus phage PfEFR-4, complete genome) position: , mismatch: 7, identity: 0.806

ttaaataatccttttgaaaatatatgggacaaaatt-	CRISPR spacer
caaaataatccttttgaaattatatagg-cataatgc	Protospacer
. ***************** *****.** ** ***

13. spacer 2.19|1095727|36|NZ_AP017630|CRISPRCasFinder,CRT matches to KC595513 (Bacillus phage Shanette, complete genome) position: , mismatch: 7, identity: 0.806

ttaaat--gaaaataaaaggagattgattaaaatgagt	CRISPR spacer
--aaatcataagataaaaggagattgattaatatggct	Protospacer
  ****   **.******************* ***. *

14. spacer 2.19|1095727|36|NZ_AP017630|CRISPRCasFinder,CRT matches to NC_028982 (Bacillus phage JL, complete genome) position: , mismatch: 7, identity: 0.806

ttaaat--gaaaataaaaggagattgattaaaatgagt	CRISPR spacer
--aaatcataagataaaaggagattgattaatatggct	Protospacer
  ****   **.******************* ***. *

15. spacer 2.40|1097099|36|NZ_AP017630|CRISPRCasFinder,CRT matches to NZ_CP045273 (Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence) position: , mismatch: 7, identity: 0.806

taattcgtaaatatataaattttatcattatacttt	CRISPR spacer
taattcgtacatatataaattttttccatcaacatt	Protospacer
********* ************* **  *  ** **

16. spacer 2.43|1097296|35|NZ_AP017630|CRISPRCasFinder,CRT matches to KT997854 (Uncultured Mediterranean phage uvDeep-CGR2-AD10-C281, complete genome) position: , mismatch: 7, identity: 0.8

ttttttagttctttttatttttataagcgtatcta	CRISPR spacer
ttttttagttctttttatttttaaaatcattcttt	Protospacer
*********************** ** *.* ..*

17. spacer 2.27|1096249|36|NZ_AP017630|CRISPRCasFinder,CRT matches to MT001829 (Salmonella phage SE_PL, complete genome) position: , mismatch: 9, identity: 0.75

ataggtaataaagtagttaagtttgaagtaacagca	CRISPR spacer
gaaggtaataaagtagttatgcttgaagtagattta	Protospacer
. ***************** *.********.   .*

18. spacer 2.27|1096249|36|NZ_AP017630|CRISPRCasFinder,CRT matches to MK773491 (Salmonella phage 7t3, complete genome) position: , mismatch: 9, identity: 0.75

ataggtaataaagtagttaagtttgaagtaacagca	CRISPR spacer
gaaggtaataaagtagttatgcttgaagtagattta	Protospacer
. ***************** *.********.   .*

19. spacer 2.27|1096249|36|NZ_AP017630|CRISPRCasFinder,CRT matches to MK268344 (Salmonella phage Munch, complete genome) position: , mismatch: 9, identity: 0.75

ataggtaataaagtagttaagtttgaagtaacagca	CRISPR spacer
gaaggtaataaagtagttatgcttgaagtagattta	Protospacer
. ***************** *.********.   .*

20. spacer 2.53|1097953|36|NZ_AP017630|CRISPRCasFinder,CRT matches to NZ_AP014824 (Geminocystis sp. NIES-3709 plasmid pGM3709_03, complete sequence) position: , mismatch: 9, identity: 0.75

atagatatctattatttttaataataatttttcttt	CRISPR spacer
ttctatatctactacttttaataataattttcgata	Protospacer
 *  *******.**.****************.  *

21. spacer 2.57|1098213|36|NZ_AP017630|CRISPRCasFinder,CRT matches to KY744240 (Weissella phage PWc, complete genome) position: , mismatch: 9, identity: 0.75

ggggcaactgttatagatggtagaaatataaaaact	CRISPR spacer
gttatcacatttaaagatggtagaaatatcaaaact	Protospacer
*  .. **  *** *************** ******

22. spacer 2.72|1099192|37|NZ_AP017630|CRISPRCasFinder,CRT matches to NC_018687 (Bacillus thuringiensis MC28 plasmid pMC189, complete sequence) position: , mismatch: 9, identity: 0.757

gttaattctattattctatttaactcatttaatatcg	CRISPR spacer
aatataattattattctatttaacatatttaatatca	Protospacer
. **   .**************** .**********.

23. spacer 2.15|1095466|36|NZ_AP017630|CRISPRCasFinder,CRT matches to NC_025179 (Escherichia coli plasmid pC59-153, complete sequence) position: , mismatch: 10, identity: 0.722

ttattatttttagaatggtggattttcatcttcatt	CRISPR spacer
atattatttttacaagggtggattttcctgaaccac	Protospacer
 *********** ** *********** *   *  .

24. spacer 2.15|1095466|36|NZ_AP017630|CRISPRCasFinder,CRT matches to NZ_CP047577 (Escherichia coli strain 94EC plasmid p94EC-1, complete sequence) position: , mismatch: 10, identity: 0.722

ttattatttttagaatggtggattttcatcttcatt	CRISPR spacer
atattatttttacaagggtggattttcctgaaccac	Protospacer
 *********** ** *********** *   *  .

25. spacer 2.15|1095466|36|NZ_AP017630|CRISPRCasFinder,CRT matches to NC_020271 (Escherichia coli O25b:H4-ST131 str. EC958 strain ST131 plasmid pJIE186-2, complete sequence) position: , mismatch: 10, identity: 0.722

ttattatttttagaatggtggattttcatcttcatt	CRISPR spacer
atattatttttacaagggtggattttcctgaaccac	Protospacer
 *********** ** *********** *   *  .

26. spacer 2.15|1095466|36|NZ_AP017630|CRISPRCasFinder,CRT matches to NZ_CP010127 (Escherichia coli strain C8 plasmid B, complete genome) position: , mismatch: 10, identity: 0.722

ttattatttttagaatggtggattttcatcttcatt	CRISPR spacer
atattatttttacaagggtggattttcctgaaccac	Protospacer
 *********** ** *********** *   *  .

27. spacer 2.15|1095466|36|NZ_AP017630|CRISPRCasFinder,CRT matches to NZ_CP019055 (Escherichia coli strain CRE1540 plasmid p1540-4, complete sequence) position: , mismatch: 10, identity: 0.722

ttattatttttagaatggtggattttcatcttcatt	CRISPR spacer
atattatttttacaagggtggattttcctgaaccac	Protospacer
 *********** ** *********** *   *  .

28. spacer 2.15|1095466|36|NZ_AP017630|CRISPRCasFinder,CRT matches to NZ_AP017611 (Escherichia coli strain 20Ec-P-124 plasmid pMRY16-002_1, complete sequence) position: , mismatch: 10, identity: 0.722

ttattatttttagaatggtggattttcatcttcatt	CRISPR spacer
atattatttttacaagggtggattttcctgaaccac	Protospacer
 *********** ** *********** *   *  .

29. spacer 2.15|1095466|36|NZ_AP017630|CRISPRCasFinder,CRT matches to NZ_CP031107 (Escherichia coli strain AMSCJX02 plasmid pAMSC2, complete sequence) position: , mismatch: 10, identity: 0.722

ttattatttttagaatggtggattttcatcttcatt	CRISPR spacer
atattatttttacaagggtggattttcctgaaccac	Protospacer
 *********** ** *********** *   *  .

30. spacer 2.15|1095466|36|NZ_AP017630|CRISPRCasFinder,CRT matches to NZ_MG825378 (Escherichia coli strain 1108 plasmid p1108-IncFIB, complete sequence) position: , mismatch: 10, identity: 0.722

ttattatttttagaatggtggattttcatcttcatt	CRISPR spacer
atattatttttacaagggtggattttcctgaaccac	Protospacer
 *********** ** *********** *   *  .

31. spacer 2.43|1097296|35|NZ_AP017630|CRISPRCasFinder,CRT matches to MN694165 (Marine virus AFVG_250M579, complete genome) position: , mismatch: 10, identity: 0.714

ttttttagttctttttatttttataagcgtatcta	CRISPR spacer
tagtttttttctttttatttttataagcccaaact	Protospacer
*  ***  ******************** .*  .

32. spacer 2.53|1097953|36|NZ_AP017630|CRISPRCasFinder,CRT matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 10, identity: 0.722

atagatatctattatttttaataataatttttcttt	CRISPR spacer
ctctctatatattatttttaaaaataattttattca	Protospacer
 *   *** ************ ********* .*.

33. spacer 2.53|1097953|36|NZ_AP017630|CRISPRCasFinder,CRT matches to NC_048709 (Vibrio phage YC, complete genome) position: , mismatch: 10, identity: 0.722

atagatatctattatttttaataataatttttcttt	CRISPR spacer
aatttaaaatattatttttaaaaataatttttatta	Protospacer
*     *  ************ ********** **

34. spacer 2.72|1099192|37|NZ_AP017630|CRISPRCasFinder,CRT matches to NZ_CP015630 (Borrelia turicatae strain BTE5EL plasmid lp159) position: , mismatch: 10, identity: 0.73

--gttaattctattattctatttaactcatttaatatcg	CRISPR spacer
gaattag--agataactctatttaactcatttaatatat	Protospacer
  .***.    ** *.*********************

35. spacer 2.73|1099258|36|NZ_AP017630|CRISPRCasFinder,CRT matches to MT774401 (CrAssphage cr6_1, complete genome) position: , mismatch: 10, identity: 0.722

aaaacttggttagatgaaactaataattttcctaaa	CRISPR spacer
aaaaattggttagatgaaactattaaaaactatagg	Protospacer
**** ***************** ***   .. **..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

769804 : 779990

Synechococcus_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096515378.1\|769804_773605_+	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	3.6e-32	25.0
WP_003453078.1\|773916_774396_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	2.6e-28	47.4
WP_096515380.1\|774395_775103_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4SM18	Cyanophage	1.1e-46	43.4
WP_096515382.1\|775422_776868_+	amidophosphoribosyltransferase	A0A1B1ISH6	uncultured_Mediterranean_phage	1.0e-56	32.7
WP_096515384.1\|776868_777870_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3FGG1	Synechococcus_phage	6.7e-71	49.0
WP_096515386.1\|777857_778472_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	8.4e-24	35.6
WP_096515388.1\|778484_779990_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	3.0e-67	46.8

DBSCAN-SWA_2

1769972 : 1781881

Clostridium_phage(22.22%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003457168.1\|1769972_1771010_-\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	5.4e-31	36.0
WP_096516234.1\|1771594_1772098_-	QueT transporter family protein	E7DN70	Pneumococcus_phage	2.2e-14	39.4
WP_096516235.1\|1772427_1773303_-	MBL fold metallo-hydrolase	Q332C0	Clostridium_botulinum_C_phage	8.2e-65	50.2
WP_096516236.1\|1773473_1774799_-	sensor histidine kinase	X5JAC0	Clostridium_phage	6.8e-71	37.5
WP_096516237.1\|1774792_1775503_-	response regulator transcription factor	A0A2R2ZGH8	Clostridioides_phage	1.9e-32	32.6
WP_096516238.1\|1775767_1776781_-	N-acetylmuramoyl-L-alanine amidase	Q8SBN4	Clostridium_phage	7.4e-118	62.8
WP_096516239.1\|1776873_1777161_-	thiamine-binding protein	NA	NA	NA	NA
WP_096516240.1\|1777373_1778387_-	DUF348 domain-containing protein	A0A143FMI2	Bacillus_phage	3.5e-19	52.0
WP_096516241.1\|1778812_1780111_-	uracil permease	Q9KX94	Enterobacteria_phage	5.3e-68	38.8
WP_096516242.1\|1780297_1781881_+	ATP-binding cassette domain-containing protein	A0A1V0SGN0	Hokovirus	6.5e-44	25.6

DBSCAN-SWA_3

2038062 : 2107933

Clostridium_phage(69.23%)

terminase,holin,tail,head,capsid,protease,portal,tRNA,integrase

attL 2081337:2081354|attR 2096241:2096258

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096516422.1\|2038062_2038992_-\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	2.0e-05	27.0
WP_096516423.1\|2039011_2039455_-	peptide deformylase	E3SLL2	Synechococcus_phage	2.5e-17	42.0
WP_096516424.1\|2039468_2041664_-	primosomal protein N'	NA	NA	NA	NA
WP_003471651.1\|2041702_2042890_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	Q9HH70	Methanothermobacter_phage	3.0e-46	33.6
WP_003449449.1\|2042895_2043108_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA
WP_042262332.1\|2043088_2043739_-	guanylate kinase	A0A143DIC6	Abalone_herpesvirus	3.3e-26	37.0
WP_003458433.1\|2043728_2043998_-	DUF370 domain-containing protein	NA	NA	NA	NA
WP_096516425.1\|2044011_2044896_-	YicC family protein	NA	NA	NA	NA
WP_096516426.1\|2045111_2046509_-	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	2.6e-57	35.1
WP_096516427.1\|2046766_2047750_-	asparaginase	NA	NA	NA	NA
WP_096516428.1\|2048098_2049574_-	stage IV sporulation protein A	NA	NA	NA	NA
WP_003458497.1\|2049909_2050905_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_096516429.1\|2050909_2052226_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA
WP_003458424.1\|2052228_2053566_-	radical SAM protein	NA	NA	NA	NA
WP_004458161.1\|2053892_2055608_-	HAMP domain-containing protein	W8CYF6	Bacillus_phage	1.5e-38	39.1
WP_096516430.1\|2055621_2056326_-	polyphenol oxidase family protein	NA	NA	NA	NA
WP_003449440.1\|2056491_2056941_-	transcriptional repressor NrdR	NA	NA	NA	NA
WP_096516431.1\|2057002_2057275_-	YlmC/YmxH family sporulation protein	NA	NA	NA	NA
WP_003449454.1\|2057416_2058190_-	RNA polymerase sporulation sigma factor SigG	A0A0A0RV91	Bacillus_phage	6.8e-47	41.4
WP_003449468.1\|2058264_2058972_-	RNA polymerase sporulation sigma factor SigE	A0A2H4JC68	uncultured_Caudovirales_phage	6.5e-20	45.0
WP_096516432.1\|2058985_2059792_-	sigma-E processing peptidase SpoIIGA	NA	NA	NA	NA
WP_157734682.1\|2059817_2060015_-	hypothetical protein	NA	NA	NA	NA
WP_096516434.1\|2060196_2061342_-	cell division protein FtsZ	NA	NA	NA	NA
WP_096516435.1\|2061355_2062594_-	cell division protein FtsA	NA	NA	NA	NA
WP_096516436.1\|2062671_2063724_-	type IV pilus twitching motility protein PilT	NA	NA	NA	NA
WP_096516437.1\|2064282_2064684_-	hypothetical protein	I2E8X1	Clostridium_phage	3.6e-36	61.5
WP_096516438.1\|2064772_2065828_-	glycosyl hydrolase family 25	Q0SPG7	Clostridium_phage	9.6e-60	38.5
WP_096516439.1\|2065877_2066315_-\|holin	phage holin family protein	M9Q253	Clostridium_phage	1.1e-54	74.4
WP_096516440.1\|2066356_2068048_-\|tail	phage tail protein	A0A0A7RUI9	Clostridium_phage	2.9e-98	51.7
WP_096516441.1\|2068059_2068623_-	hypothetical protein	NA	NA	NA	NA
WP_096516442.1\|2068624_2069329_-\|tail	phage tail family protein	I2E8W2	Clostridium_phage	5.3e-30	40.9
WP_096516443.1\|2069342_2072300_-\|tail	phage tail tape measure protein	Q8SBP1	Clostridium_phage	5.8e-155	64.1
WP_096516444.1\|2072841_2073159_-	hypothetical protein	I2E8W0	Clostridium_phage	9.0e-22	51.4
WP_096516445.1\|2073219_2073861_-\|tail	phage tail protein	Q8SBP3	Clostridium_phage	1.2e-68	66.0
WP_096517105.1\|2073882_2074173_-	hypothetical protein	Q8SBP4	Clostridium_phage	4.2e-34	68.4
WP_096516446.1\|2074237_2074681_-	HK97 gp10 family phage protein	Q8SBP5	Clostridium_phage	1.1e-54	70.4
WP_096516447.1\|2074681_2075008_-\|head	phage head closure protein	I2E8V6	Clostridium_phage	3.7e-39	72.6
WP_096516448.1\|2075000_2075279_-\|head,tail	phage gp6-like head-tail connector protein	Q8SBP7	Clostridium_phage	2.6e-33	71.7
WP_096516449.1\|2075297_2076527_-\|capsid	phage major capsid protein	Q8SBP8	Clostridium_phage	5.7e-157	78.7
WP_096516450.1\|2076568_2077174_-\|head,protease	HK97 family phage prohead protease	Q8SBP9	Clostridium_phage	1.9e-97	87.6
WP_096516451.1\|2077163_2078411_-\|portal	phage portal protein	Q8SBQ1	Clostridium_phage	1.6e-199	78.9
WP_096516452.1\|2078411_2080151_-\|terminase	terminase large subunit	Q8SBQ2	Clostridium_phage	7.3e-307	86.3
WP_096516453.1\|2080143_2080647_-\|terminase	phage terminase small subunit P27 family	Q8SBQ3	Clostridium_phage	5.9e-76	85.0
WP_096516454.1\|2080746_2081169_-	HNH endonuclease	Q8SBK4	Clostridium_phage	2.4e-62	80.7
WP_096516455.1\|2081149_2081446_-	hypothetical protein	NA	NA	NA	NA
2081337:2081354	attL	NA	NA	NA	NA
WP_172861110.1\|2081450_2081624_-	hypothetical protein	A0A2K9VC64	Lactobacillus_phage	8.1e-09	66.7
WP_096516456.1\|2081793_2082339_-\|integrase	site-specific integrase	Q8SBK8	Clostridium_phage	9.0e-70	71.8
WP_096516457.1\|2082335_2082542_-	hypothetical protein	NA	NA	NA	NA
WP_096516458.1\|2082682_2083144_-	sigma-70 family RNA polymerase sigma factor	A0A0A8WFM4	Clostridium_phage	1.2e-14	39.7
WP_096516459.1\|2083273_2084038_-	phosphoadenosine phosphosulfate reductase family protein	Q24LD4	Clostridium_phage	1.8e-76	59.6
WP_096517106.1\|2084049_2084325_-	winged helix-turn-helix transcriptional regulator	M9Q2I9	Clostridium_phage	2.6e-33	78.0
WP_096516460.1\|2084392_2084782_-	single-stranded DNA-binding protein	Q8SBL5	Clostridium_phage	8.7e-43	64.5
WP_157734683.1\|2084796_2084943_-	hypothetical protein	NA	NA	NA	NA
WP_096516461.1\|2084954_2086235_-	DNA helicase	Q8SBL9	Clostridium_phage	3.5e-197	82.4
WP_096516462.1\|2086247_2086988_-	conserved phage C-terminal domain-containing protein	Q8SBM0	Clostridium_phage	6.3e-66	56.1
WP_157734684.1\|2087014_2087173_-	hypothetical protein	NA	NA	NA	NA
WP_096516463.1\|2087175_2087355_-	hypothetical protein	NA	NA	NA	NA
WP_157734685.1\|2087654_2087798_-	hypothetical protein	NA	NA	NA	NA
WP_096516464.1\|2087933_2088308_+	helix-turn-helix transcriptional regulator	A0A0A8WF83	Clostridium_phage	1.9e-23	46.3
WP_096516465.1\|2088647_2088857_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_096516466.1\|2088944_2090453_+	recombinase family protein	I2E8X2	Clostridium_phage	4.6e-233	81.1
WP_096516467.1\|2091011_2092676_-	penicillin-binding protein 2	NA	NA	NA	NA
WP_003459577.1\|2092793_2093420_-	uridine kinase	A0A2K9L505	Tupanvirus	2.8e-35	43.3
WP_096516468.1\|2093419_2094649_-	U32 family peptidase	Q6DW11	Phage_TP	8.8e-57	39.9
WP_096516469.1\|2094654_2095299_-	O-methyltransferase	NA	NA	NA	NA
WP_096516470.1\|2095314_2096343_-	endolytic transglycosylase MltG	NA	NA	NA	NA
2096241:2096258	attR	NA	NA	NA	NA
WP_096516471.1\|2096471_2098304_-	translational GTPase TypA	NA	NA	NA	NA
WP_096516472.1\|2098460_2100128_-	ribonuclease J	NA	NA	NA	NA
WP_003451087.1\|2100198_2100651_-	transcriptional repressor	NA	NA	NA	NA
WP_003459598.1\|2100671_2100926_-	DUF1292 domain-containing protein	NA	NA	NA	NA
WP_003459573.1\|2100941_2101355_-	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_003451703.1\|2101402_2101660_-	IreB family regulatory phosphoprotein	NA	NA	NA	NA
WP_096516473.1\|2101803_2104443_-\|tRNA	alanine--tRNA ligase	A0A2K9L3D8	Tupanvirus	1.6e-63	33.3
WP_096516474.1\|2105035_2106073_-	AI-2E family transporter	NA	NA	NA	NA
WP_096516475.1\|2106098_2106572_-	PRC-barrel domain-containing protein	NA	NA	NA	NA
WP_003459581.1\|2106853_2107933_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_AP017631

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_AP017630

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection