CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_AP017368	Candidatus Desulfovibrio trichonymphae strain Rs-N31	2 crisprs	csx1,csx16,cas3-cas2,cas3f,csa3	0	2	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_AP017368_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP017368_1

287684-289028

Orphan

I-C

Consensus_repeat	Method
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	PILER-CR
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	CRISPRCasFinder
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	CRT

20 spacers

The CRISPR arrays of NZ_AP017368_1

>merge|NZ_AP017368|1|287684-289028|PILER-CR,CRISPRCasFinder,CRT
GTCGCCCCTTCACAGGGGCGTGGATTGAAACGAGACAAGCGTAGAGAACGCGCAGAACTACAAGGGTCGCCCCTTCACAGGGGCGTGGATTGAAACATATATATATAGCCAGAATCACACAATTTCCGCCGTCGCCCCTTCACAGGGGCGTGGATTGAAACCTATGTCAACTTGGTGAAACCCAAGGTCGACCTCAGTCGCCCCTTCACAGGGGCGTGGATTGAAACGGCTTCGAGGACGTGCGCCTGCTGGTACGCTCACGTCGCCCCTTCACAGGGGCGTGGATTGAAACTGTGCCTCTCGGATCCATTGTCGATGTGATGTTGTCGCCCCTTCACAGGGGCGTGGATTGAAACTCGTGGGCGCAATGTCTATGGTCTACCCAATCTCAGTCGCCCCTTCACAGGGGCGTGGATTGAAACTGGAGCTGCATGAATCGCTGTGTGAGGAGTACCGGGGTCGCCCCTTCACAGGGGCGTGGATTGAAACACATGCCCCCGTGCACATCAGCTGCCCCCTAAGGTCGCCCCTTCACAGGGGCGTGGATTGAAACCTGCTCATGCCCACTAAACTGGTGCGCGCAGGCGGTCGCCCCTTCACAGGGGCGTGGATTGAAACCCTTGAATCCGCGGTGGGTGCCTGTCGGACAACAGGTCGCCCCTTCACAGGGGCGTGGATTGAAACATTATTCAGATCCCCCGGGGTAGCGGTTGGTGTAGTCGCCCCTTCACAGGGGCGTGGATTGAAACTCGTCAATAGACGCTCTCAACAGTTCGATATAAGCGTCGCCCCTTCACAGGGGCGTGGATTGAAACAGCCGAACAACGGACTGGTTGTTACAGCTGCAGGGTCGCCCCTTCACAGGGGCGTGGATTGAAACAACGTTATTGTCATCCTGCTGGGAATTATCCTTGCGTCGCCCCTTCACAGGGGCGTGGATTGAAACTATTTCTTGTTGGGTAATGTGGTATTTGCGTAGCCATGTCGCCCCTTCACAGGGGCGTGGATTGAAACCTGTGTTTCAGTCGATAGCACGTGGACTATAGCCGTCGCCCCTTCACAGGGGCGTGGATTGAAACCTGTTCTTTATCCCCCCAGCTCCCTGATGTATACGGTCGCCCCTTCACAGGGGCGTGGATTGAAACACGGACAACGGCTTTATTGAAGTTACGGGTGGTGGTGTCGCCCCTTCACAGGGGCGTGGATTGAAACAATGTCCTCGTCGTCGAACCGATTGACAGCCGCGAGTCGCCCCTTCACAGGGGCGTGGATTGAAACGAGGTGGTAGCCCGCCTGTTCGCCGGTAGGGAGTGTGTCGCCCCTTCACAGGGGCGTGGATTGAAAC

>NZ_AP017368|1|1|287684-289028|PILER-CR
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	GAGACAAGCGTAGAGAACGCGCAGAACTACAAGG
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	ATATATATATAGCCAGAATCACACAATTTCCGCC
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	CTATGTCAACTTGGTGAAACCCAAGGTCGACCTCA
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	GGCTTCGAGGACGTGCGCCTGCTGGTACGCTCAC
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	TGTGCCTCTCGGATCCATTGTCGATGTGATGTT
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	TCGTGGGCGCAATGTCTATGGTCTACCCAATCTCA
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	TGGAGCTGCATGAATCGCTGTGTGAGGAGTACCGGG
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	ACATGCCCCCGTGCACATCAGCTGCCCCCTAAG
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	CTGCTCATGCCCACTAAACTGGTGCGCGCAGGCG
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	CCTTGAATCCGCGGTGGGTGCCTGTCGGACAACAG
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	ATTATTCAGATCCCCCGGGGTAGCGGTTGGTGTA
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	TCGTCAATAGACGCTCTCAACAGTTCGATATAAGC
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	AGCCGAACAACGGACTGGTTGTTACAGCTGCAGG
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	AACGTTATTGTCATCCTGCTGGGAATTATCCTTGC
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	TATTTCTTGTTGGGTAATGTGGTATTTGCGTAGCCAT
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	CTGTGTTTCAGTCGATAGCACGTGGACTATAGCC
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	CTGTTCTTTATCCCCCCAGCTCCCTGATGTATACG
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	ACGGACAACGGCTTTATTGAAGTTACGGGTGGTGGT
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	AATGTCCTCGTCGTCGAACCGATTGACAGCCGCGA
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	GAGGTGGTAGCCCGCCTGTTCGCCGGTAGGGAGTGT
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC

>NZ_AP017368|1|1|287684-289028|CRISPRCasFinder
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	GAGACAAGCGTAGAGAACGCGCAGAACTACAAGG
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	ATATATATATAGCCAGAATCACACAATTTCCGCC
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	CTATGTCAACTTGGTGAAACCCAAGGTCGACCTCA
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	GGCTTCGAGGACGTGCGCCTGCTGGTACGCTCAC
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	TGTGCCTCTCGGATCCATTGTCGATGTGATGTT
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	TCGTGGGCGCAATGTCTATGGTCTACCCAATCTCA
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	TGGAGCTGCATGAATCGCTGTGTGAGGAGTACCGGG
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	ACATGCCCCCGTGCACATCAGCTGCCCCCTAAG
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	CTGCTCATGCCCACTAAACTGGTGCGCGCAGGCG
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	CCTTGAATCCGCGGTGGGTGCCTGTCGGACAACAG
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	ATTATTCAGATCCCCCGGGGTAGCGGTTGGTGTA
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	TCGTCAATAGACGCTCTCAACAGTTCGATATAAGC
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	AGCCGAACAACGGACTGGTTGTTACAGCTGCAGG
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	AACGTTATTGTCATCCTGCTGGGAATTATCCTTGC
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	TATTTCTTGTTGGGTAATGTGGTATTTGCGTAGCCAT
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	CTGTGTTTCAGTCGATAGCACGTGGACTATAGCC
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	CTGTTCTTTATCCCCCCAGCTCCCTGATGTATACG
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	ACGGACAACGGCTTTATTGAAGTTACGGGTGGTGGT
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	AATGTCCTCGTCGTCGAACCGATTGACAGCCGCGA
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	GAGGTGGTAGCCCGCCTGTTCGCCGGTAGGGAGTGT
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC

>NZ_AP017368|1|1|287684-289028|CRT
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	GAGACAAGCGTAGAGAACGCGCAGAACTACAAGG
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	ATATATATATAGCCAGAATCACACAATTTCCGCC
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	CTATGTCAACTTGGTGAAACCCAAGGTCGACCTCA
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	GGCTTCGAGGACGTGCGCCTGCTGGTACGCTCAC
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	TGTGCCTCTCGGATCCATTGTCGATGTGATGTT
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	TCGTGGGCGCAATGTCTATGGTCTACCCAATCTCA
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	TGGAGCTGCATGAATCGCTGTGTGAGGAGTACCGGG
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	ACATGCCCCCGTGCACATCAGCTGCCCCCTAAG
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	CTGCTCATGCCCACTAAACTGGTGCGCGCAGGCG
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	CCTTGAATCCGCGGTGGGTGCCTGTCGGACAACAG
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	ATTATTCAGATCCCCCGGGGTAGCGGTTGGTGTA
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	TCGTCAATAGACGCTCTCAACAGTTCGATATAAGC
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	AGCCGAACAACGGACTGGTTGTTACAGCTGCAGG
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	AACGTTATTGTCATCCTGCTGGGAATTATCCTTGC
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	TATTTCTTGTTGGGTAATGTGGTATTTGCGTAGCCAT
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	CTGTGTTTCAGTCGATAGCACGTGGACTATAGCC
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	CTGTTCTTTATCCCCCCAGCTCCCTGATGTATACG
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	ACGGACAACGGCTTTATTGAAGTTACGGGTGGTGGT
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	AATGTCCTCGTCGTCGAACCGATTGACAGCCGCGA
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC	GAGGTGGTAGCCCGCCTGTTCGCCGGTAGGGAGTGT
GTCGCCCCTTCACAGGGGCGTGGATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP017368.1\|WP_096400368.1\|290225_292124_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275129
NZ_AP017368.1\|WP_096399268.1\|292166_293417_+\|radical-SAM-family-heme-chaperone-HemW	unknown	unknown	gnl\|CDD\|223708
NZ_AP017368.1\|WP_096399265.1\|282221_283295_+\|chorismate-synthase	unknown	unknown	gnl\|CDD\|376510
NZ_AP017368.1\|WP_096399274.1\|296580_297147_-\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|319876
NZ_AP017368.1\|WP_096399271.1\|295547_295964_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017368.1\|WP_096399272.1\|295935_296319_-\|AtpZ/AtpI-family-protein	unknown	unknown	gnl\|CDD\|378198
NZ_AP017368.1\|WP_096399261.1\|276419_276854_-\|50S-ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703
NZ_AP017368.1\|WP_096399266.1\|286199_287186_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017368.1\|WP_096399275.1\|297151_297523_-\|hydrogenase-maturation-nickel-metallochaperone-HypA	unknown	unknown	gnl\|CDD\|376468
NZ_AP017368.1\|WP_096399269.1\|294356_294680_-\|ATP-synthase-F0-subunit-C	unknown	unknown	gnl\|CDD\|349414
NZ_AP017368.1\|WP_096399263.1\|280108_280957_+\|pantoate--beta-alanine-ligase	unknown	unknown	gnl\|CDD\|234741
NZ_AP017368.1\|WP_096399262.1\|276984_277773_-\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|234595
NZ_AP017368.1\|WP_096400366.1\|283354_285568_+\|ATP-dependent-RecD-like-DNA-helicase	unknown	unknown	gnl\|CDD\|273632
NZ_AP017368.1\|WP_096399260.1\|275982_276375_-\|30S-ribosomal-protein-S9	unknown	unknown	gnl\|CDD\|178888
NZ_AP017368.1\|WP_096400361.1\|273961_274603_+\|YigZ-family-protein	unknown	unknown	gnl\|CDD\|183205
NZ_AP017368.1\|WP_096399264.1\|281001_282174_+\|methionine-adenosyltransferase	unknown	unknown	gnl\|CDD\|235374
NZ_AP017368.1\|WP_145954790.1\|296350_296572_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017368.1\|WP_096399267.1\|289102_289903_-\|RNA-methyltransferase	unknown	unknown	gnl\|CDD\|349976
NZ_AP017368.1\|WP_096400364.1\|277796_279878_-\|NAD-dependent-DNA-ligase-LigA	unknown	unknown	gnl\|CDD\|236137
NZ_AP017368.1\|WP_096399270.1\|294743_295448_-\|F0F1-ATP-synthase-subunit-A	unknown	unknown	gnl\|CDD\|235617

Protein	Function_ID	Function_description	E-value
NZ_AP017368.1\|WP_096400368.1\|290225_292124_+\|hypothetical-protein	gnl\|CDD\|275129	TIGR04326, hypothetical_protein_HMPREF0179_02238, surface carbohydrate biosynthesis protein, LIC13510 family. This uncharacterized, rare protein occurs in the highly variable O-antigen region of some strains of Leptospira, as well as strains of and serves as a phylogenetic marker for the likely presence of six additional proteins, including an activated sugar-nucleotidyltransferase, an activated sugar epimerase and a dehydratase, an aldolase, and a DegT family aminotransferase. The patterns suggests a role in preparing a novel sugar for O-antigen incorporation.	0
NZ_AP017368.1\|WP_096399268.1\|292166_293417_+\|radical-SAM-family-heme-chaperone-HemW	gnl\|CDD\|223708	COG0635, HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism].	4.35132e-114
NZ_AP017368.1\|WP_096399265.1\|282221_283295_+\|chorismate-synthase	gnl\|CDD\|376510	pfam01264, Chorismate_synt, Chorismate synthase.	0
NZ_AP017368.1\|WP_096399272.1\|295935_296319_-\|AtpZ/AtpI-family-protein	gnl\|CDD\|378198	pfam09527, ATPase_gene1, Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophobic stretches and is presumed to be a subunit of the enzyme. It carries two transmembrane helices and is a magnesium or calcium uniporter. The atp operon of alkaliphilic Bacillus pseudofirmus OF4, as in most prokaryotes, contains the eight structural genes for the F-ATPase (ATP synthase), which are preceded by an atpI gene that encodes a membrane protein with 2 TMSs. A tenth gene, atpZ, has been found in this operon, which is upstream of and overlapping with atpI.	5.50862e-15
NZ_AP017368.1\|WP_096399261.1\|276419_276854_-\|50S-ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	7.1214e-91
NZ_AP017368.1\|WP_096399274.1\|296580_297147_-\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|319876	cd10554, HycB_like, HycB, HydN and similar proteins. This family includes HycB, the FeS subunit of a membrane-associated formate hydrogenlyase system (FHL-1) in Escherichia coli that breaks down formate, produced during anaerobic fermentation, to H2 and CO2. FHL-1 consists of formate dehydrogenase H (FDH-H) and the hydrogenase 3 complex (Hyd-3). HycB is thought to code for the [4Fe-4S] ferredoxin subunit of hydrogenase 3, which functions as an intermediate electron carrier protein between hydrogenase 3 and formate dehydrogenase. HydN codes for the [4Fe-4S] ferredoxin subunit of FDH-H; a hydN in-frame deletion mutation causes only weak reduction in hydrogenase activity, but loss of more than 60% of FDH-H activity. This pathway is only active at low pH and high formate concentrations, and is thought to provide a detoxification/de-acidification system countering the buildup of formate during fermentation.	3.92692e-50
NZ_AP017368.1\|WP_096399275.1\|297151_297523_-\|hydrogenase-maturation-nickel-metallochaperone-HypA	gnl\|CDD\|376468	pfam01155, HypA, Hydrogenase/urease nickel incorporation, metallochaperone, hypA. HypA is a metallochaperone that binds nickel to bring it safely to its target. The targets for Hypa are the nickel-containing enzymes [Ni,Fe]-hydrogenase and urease. The nickel coordinates with four nitrogens within the protein. The four conserved cysteines towards the C-terminus bind one zinc moiety probably to stabilize the protein fold.	7.42362e-28
NZ_AP017368.1\|WP_096399269.1\|294356_294680_-\|ATP-synthase-F0-subunit-C	gnl\|CDD\|349414	cd18121, ATP-synt_Fo_c, membrane-bound Fo complex of F-ATP synthase, subunit c. Subunit c (also called subunit 9, or proteolipid) of the Fo complex of F-ATP synthase. The F-ATP synthase (also called FoF1-ATPase) consists of two structural domains: the F1 (factor one) complex containing the soluble catalytic core, and the Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F1 is composed of alpha, beta, gamma, delta, and epsilon subunits with a stoichiometry of 3:3:1:1:1, while Fo consists of the three subunits a, b, and c (1:2:10-14). An oligomeric ring of 10-14 c subunits (c-ring) make up the Fo rotor. The flux of protons though the ATPase channel (Fo) drives the rotation of the c-ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the c-ring of Fo. The F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts, or in the plasma membranes of bacteria. The F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis. This group also includes F-ATP synthase that has also been found in the archaea Methanosarcina acetivorans.	3.77088e-18
NZ_AP017368.1\|WP_096399263.1\|280108_280957_+\|pantoate--beta-alanine-ligase	gnl\|CDD\|234741	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed.	2.05069e-131
NZ_AP017368.1\|WP_096399262.1\|276984_277773_-\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|234595	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional.	5.24751e-106
NZ_AP017368.1\|WP_096400366.1\|283354_285568_+\|ATP-dependent-RecD-like-DNA-helicase	gnl\|CDD\|273632	TIGR01448, recD_rel, helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. [Unknown function, Enzymes of unknown specificity].	0
NZ_AP017368.1\|WP_096399260.1\|275982_276375_-\|30S-ribosomal-protein-S9	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	5.16269e-72
NZ_AP017368.1\|WP_096400361.1\|273961_274603_+\|YigZ-family-protein	gnl\|CDD\|183205	PRK11568, PRK11568, IMPACT family protein.	5.12899e-58
NZ_AP017368.1\|WP_096399264.1\|281001_282174_+\|methionine-adenosyltransferase	gnl\|CDD\|235374	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.	0
NZ_AP017368.1\|WP_096399267.1\|289102_289903_-\|RNA-methyltransferase	gnl\|CDD\|349976	cd18103, SpoU-like_RlmB, SAM-dependent rRNA methylase related to RlmB. 23S rRNA-M2G2251-MTase RlmB catalyzes the methylation of guanosine 2251, a modification conserved in the peptidyltransferase domain of 23S rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	7.50115e-50
NZ_AP017368.1\|WP_096400364.1\|277796_279878_-\|NAD-dependent-DNA-ligase-LigA	gnl\|CDD\|236137	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.	0
NZ_AP017368.1\|WP_096399270.1\|294743_295448_-\|F0F1-ATP-synthase-subunit-A	gnl\|CDD\|235617	PRK05815, PRK05815, F0F1 ATP synthase subunit A; Validated.	1.28908e-47

>NZ_AP017368.1|WP_096399266.1|286199_287186_-|hypothetical-protein
MKHIIPPFISQSITQITGVRSGVDDAQHLRLFRQTHRQFSIIQLAQTFHSNTLQVRKHRVRALHDFTDGIQATLEPGFDAHLRLCRRTQHNGRCVQAGQFLQSGEAGTKKPHRQGLRLIQNNYAAGDVVQFATARGSSGKKRLEELYGSGYNNRRIPVFPCQCRQIFQCVSVFRGFGLILPTHIAVMFHNSVRQFFSKSFTKNVGCLFNDAGIGDHIDDAAQSVFFSVFHGKRQRREGLAAARRHSEGKNALRRYSCITAIVQHFGPIFIDWQFCRACYLFRQMGVQPFVQQRQGRIAAALFISLWFHKGFCIKKIRIHETGIKHLAP
>NZ_AP017368.1|WP_096400366.1|283354_285568_+|ATP-dependent-RecD-like-DNA-helicase
MPADADTVELTGTVDLVIFHNEENGYTVLRLLSGKSPQGGRAARRLPCSPDAVTCVGHLLKPRGGVQIKLTGRWVNNPRFGRQFVFDAAEEMLPATSESIRLYLSSGLIKGVGEGMAGRIVKLFGDDTIRVLDEEPERLLKVHGIGRKSLDRICGSWAEHRAVRDLMLFLQPHGITPAYAMRIYRAYGVQALEVVRENPYRLAMDIHGIGFVTADAAAHKLGFESGHPLRVQAGTLYVLQKSIDDGNVYLPEEKLLADTGAQLNLEPEFVAEAIASLEGEERIVREEMDGETAAYLSRYYHCESKTASYLQRLIHSPRSVSFADADGTVDKVAGAMSMTLAPEQCNALCTVTRSKIMVLTGGPGTGKTTIINAVIRLFSEHRARILLAAPTGRAAKRMAEACAREACTIHRLLEYSPKEDGFARNEDRPLACGLLVVDESSMMDCLLFYHLLKAVPLGATLVLVGDVHQLPSVGPGNVLADIIASGIVPVVELTEIFRQSAESEIICNAHQINHGTVPSLESNKNRLSDFYFIHQNDPEKAADIMVDLVRNHIPRRFGLNPMDDIQVLTPMHKGAVGAGRMNVLLQDALNPNGLEVRRGERAFRLHDKVMQLRNNYDKDVFNGDLGRIVFMDAAERALSVNFDDRVVPYDFNELDELVPAYAISIHKSQGSEYGAVVIPVMMQHYVLLQRNLIYTGVTRGKKLVVLVGEARALHMAVKNDKTRRRYTRLAKRLNSED
>NZ_AP017368.1|WP_096399265.1|282221_283295_+|chorismate-synthase
MAGSSFGRLLRLTTFGESHGSGLGGVVDGCPAGLALSEADMQAELELRKPGHGPTATRRKESDRVRLLSGVFAGVTTGTPIAFYIVNEDRRSHDYGDLAGVFRPGHADWSYFQKYNGIRDYRGGGRASGRETAARVAGGVIAKKILCRRGVTISAACVELGGIAVPPEDVDIARAGARPYFAASDAAPALWDTRVAEARKNGDTLGGIVLITVQNVPAGLGEPVFDKLEAVLAHAVMSVGAVKGVEFGAGFAAARSTGSRNNDPLLPGGMFASNHAGGILGGISSGQDIVLRAAVKPIASIAQKQRTVDREGRAAEILVGGRHDLAAIPRVIPVLCAMTALALADALLLQTRMEPGR
>NZ_AP017368.1|WP_096399264.1|281001_282174_+|methionine-adenosyltransferase
MQTKGKYYFTSESVTEGHPDKVADQISDAVLDTLLAQDPEAHVACETLVTTGMAVIAGEISTRGYADFPTVARETIKQIGYSSSEMGFDWQTCAVISSIDRQSPDIAQGVVREKQEDQGAGDQGMMFGYACNETSTLMPAPIYWAHQLSQRLAAVRKEEIVDFFRPDGKTQVSFEYHDGKPVRINNVVVSTQHTESVSHDDVAEAVRREVILPVLSSSGYFDEKDCEIFINTTGRFVVGGPMGDCGLTGRKIIQDTYGGSGHHGGGAFSGKDPSKVDRSGAYMGRYIAKNIVAAGLAPACEVQIAYCIGVAQPVSVLVSSQGTGEIPDEILTKAVREIFDLRPYFISKRLDLKRPVYKKTSCYGHFGRELPEFTWEITDAAADLRVAAKV
>NZ_AP017368.1|WP_096399263.1|280108_280957_+|pantoate--beta-alanine-ligase
MQTLANPQELAGQCRNWHTQGQSIALVPTMGCYHAGHEALMRYGRTVATRLVVSLFVNPAQFGPGEDLDAYPRDEARDEAVAEACGADVLFMPQPGDIYMPDHAAWVDVPDMAAGLCGKSRPTHFRGVCTVVLKLLLLTLADVAVFGEKDWQQQAIIRRMARDLGVQTRIESRPVVRDPDGLALSSRNVYLTVEERAQAPEIRRALRCAQEMASRGEKNAAILQQAVLRRWAEHLSLGRLDYLAVVRPDTLVPLSAIDGPALMACAVQLGRSRLIDNILLHT
>NZ_AP017368.1|WP_096400364.1|277796_279878_-|NAD-dependent-DNA-ligase-LigA
MSHPKNQPGAPEQHDSLSEQPAAGARSRVERLTADLERHNYLYHTLDAPEISDDLYDALFHELQTLERLYPRLRSGYSPTLRVGGGLLDGLTKKNHSRRMYGLENVFSGAELRNFLARMRRVLPEAPLLFWCDPKLDGLALEIIYENGVLTEALTRGDGASGEMVTDAVRTIQTVPLRLAGAGPFPELLEVRGEVIIFKKDFAALNERQEALGRKQFANPRNAAAGAVRQLNIAVAESRPLRFLAYSLGSVIWSPAPASGRQHDVMERLATWGFLTPPEGKLCAGVGEVETYADFVRERRPQFTMEIDGIVIKQDSLEAQEALGFTARAPRFAVAYKFPASQVETLLRRIDVQTGRTGVLTPVAVLEPVSVGGVMVSRATLHNEDEICRRDVREGDTVIVQRAGDVIPEVVGPVPGKRRAGSRAYVFPHVCPACGETAHRETGEAAWRCGNLSCPAVRLLRVVHFVSKAGLDIQGIGQKRIGQFVGAGIVQSPADLFVLTVEALLHFERMGEILAKKIVSAFDEARLSATLPRLISALGIRHVGGQTARLLAGRYRTLDELGRADAETLQSLPDVGPEVAASIRNFFDSPTNRALLVRFRELGLWPQGATSASGENALRGKSVLFTGSLSLPRARALELAEAAGAVPASSMSKKLDYLVVGEKPGGKLAKADSLGVAVLDETAFMALLASAGL
>NZ_AP017368.1|WP_096399262.1|276984_277773_-|4-hydroxy-tetrahydrodipicolinate-reductase
MSTAIVVVGADGRMGKTVGNLVTADLAYSLAGLVDRAEHLQALSCAGCPVDDNLEAVLPKAPGAVIVDFTAPSVSLQSARVAASTGHALVVGTTGFTDAQMGRLRKLAEKTPIFWSSNMSVGVNVLLKILPGLARTLGEGYDIELVELHHNRKKDAPSGTALTLGACLAQARGWDFGKARRVSRDGITGERPKAQIGVQAVRGGDVVGVHTIYFMGQGERIEVTHHAHSRENFAQGALRAAAWLAGRTAGKIYGMQDIFSQI
>NZ_AP017368.1|WP_096399261.1|276419_276854_-|50S-ribosomal-protein-L13
MKTFSPTPKDINRQWFVVDAQRQILGRLASQIAHRLRGKHKPEFAPHMDNGDFIVVVNCEKIKVTGAKLTDKKYYRHSGWVGSLKTTVLGDILADKPARVLMHAVRGMLPRNRLGRAMLKKLKIYAGAEHPHAPQNPQPLTLPY
>NZ_AP017368.1|WP_096399260.1|275982_276375_-|30S-ribosomal-protein-S9
MREKFEYGTGRRKTATARTRLYTGSGAIVINGRSCEEYFPRKTLQMIIRQPLVLSKMADKLDVKVNVSGGGVTGQAEAVRHGISRALLRVEPELRAVFKKSGLLTRDARKKERKKYGLRAARARYQYSKR
>NZ_AP017368.1|WP_096400361.1|273961_274603_+|YigZ-family-protein
MRFPIPAASAEQPYCTELVVRRSRFMAQCAHTPDAGSAKAFIEATGRCRNDADHNCWAYAAGAPGDTAHIGSSDDGEPHGTAGRPMLSVLLHCGIGELCVVVSRWFGGVKLGTGGLVRTYQDAVRENLANLALAERIPSQQVAVTLKYAHLAGMHRLLPLWEARIMEQSCEDAAKLRIELPQAHVQNFEQALANMSNGTAIFHRTGGEVYGKI
>NZ_AP017368.1|WP_096399267.1|289102_289903_-|RNA-methyltransferase
MHTCSDKAQLLPGVKPVLELLLSNPSHIDLVYCKKGLRSREALEAQRLCRQHGLRFSLVDQLVLDRLCRDDKGRKAVAHQGLMARLTMTAFCGLDHLLSTVTEAPLPLLLALDQVQDPGNVGTLCRTLYTLGGAGLVLPIHNSARLGPAAHKAAAGALEHLPAAKVTNLGHALDQAEEAGLAIYGTGVAGKPAAAGTLNAFTEPLRLPAVLVLGNEQKGLRPGVAKRCAHLLHIPQARPLDSFNVAQAGAILLGLAAAAQTRAVDA
>NZ_AP017368.1|WP_096400368.1|290225_292124_+|hypothetical-protein
MDRSRARSNAAPERLVVRFDAWDVPQDEISLPAFLQNELLQIRAEHAAWAYDFARLRVNGREVQEYLRCGESLSFWWCSLIYERHPKMTPGLYTIYRLRVLERLMDAREVTALRLRGGNRRLARSLAAMCAASGRTFAQENTDDMRPDARPPASGIIARLYRLCPAPVRAMARLAHWWWSVRRKLPFAGHAPLPHAQGQSASIVTYFPNIDMDAAQQGRFRSRYFESLHNALNAHGGGRRLRWLFIRFPVPDFDLDRCIALRDQFRKAGKDGLSFHYLEEFLSTRDILAALLRYARLTVASLRLERHVRAAFCFAGSRLNFRDRLAVYWAESFRGWLCLERCLQQRAFNNWVRLSGPQRWTLFPLENCPWERMLTHAVHEAGAGPVFGTQHSVIRPADFRYFDDPRAFSAPDCAAFQPDELRGNGHSACAQWLEAGVPARRLGKVEALRYLYLTKKTQNDSSKTPPLPYKQLLVVTSFFADETRAHLALLAKALRAGLLDEFAVVVKPHPYLPVRKILHELLGARAEQIQEAGGPIAAHLLPGVHVWASNSTTAALEAAIMGLPVMAMPPFDDFDLCPLQDAPGLPRTIGLAGLRRALAEAVPLPLAPDYLELNPELPLWRELLFAEKPFSV
>NZ_AP017368.1|WP_096399268.1|292166_293417_+|radical-SAM-family-heme-chaperone-HemW
MIVYIHVPFCRTRCNYCAFHSTPLGRGVEAAASPLVRDYADTLLLELAHWADRYGGADVQTIFWGGGTPSLLPPRIVGIVLERLAKYFTLSSKVEVSLEANPESLRDTSRAAQYLSVGVNRCSIGIQSLDETTLRVLGRTHRAKDSLHAVYVAREAGFVNINVDLMWGLPGQSVRNWLQTLKDVTRMAPEHISAYGLTLESGTALELDCTEGRVTLPPERDQSIMFTEGAAFLESCGYMHYEISNFARMGFQCRHNRWYWEGMNYLGLGPSATSTIQGRRWTNPAGQKAWDEKMRHGQLDDNIEYLTPTTHLLEMLMLRLRTTRGLRIKVWRELTGRDFLRDNQKMVQALHENGLIHIRHGRLRLTRNGMLVSNAILSNLFERTQEVLELPPPTAGEQRRLSQKPAALQPVRYPTV
>NZ_AP017368.1|WP_096399269.1|294356_294680_-|ATP-synthase-F0-subunit-C
MRKFLMTALNTAALLGMASMAFAADKLDPAALGFTCLAAAIGIGIAACGCGIGMGLGLKGACEGVARNPEVSGKITGTMILAFAFIESLAIYALVISFILLYANPYA
>NZ_AP017368.1|WP_096399270.1|294743_295448_-|F0F1-ATP-synthase-subunit-A
MAGGLPHPVLLSTFFGMDEVVIHGQAVEFKHVFYSWIAMALLFGVALILRKRLTMVPGGLQNFFEALIDTIEKFVCSNMGEVGRKYVPLLAGMFIYIFCMNLMGLVPGFDAPTANLNSTVCMALFVFVFYNIVGLLRWKARYVHHFTGPSKLLIPLMLPLEVVSHIARPLSLALRLFGNIRGEEIVIVLFFVMAPLLGTLPIYALFLLGKTMQAFVFFMLTMFYIKSALEAPEH
>NZ_AP017368.1|WP_096399271.1|295547_295964_-|hypothetical-protein
MLKTMSRSLDAWLWRRKIWHPEIGPLLRNELLLTFFCLLCGGAVYTVAPWFFWFGVGSGFMTLTFLSLARFFLRTGPGEYNTAFLCAVLLRWGGRLIVFAALLYTAMIVCKAPVTAILGGSTAAAVTALATYALAARS
>NZ_AP017368.1|WP_096399272.1|295935_296319_-|AtpZ/AtpI-family-protein
MYASTASCGQKNKHAALILDLDGRKRAVFKDFLQQQKNGMEAMAGLGVIGLHLVSGPLVGVCMGYGLDYWFGSGPWCKLLFLLVGIVAGFLNVYRDTRRLLKKMAAQDAHTAKILRNTHVENDVAQP
>NZ_AP017368.1|WP_145954790.1|296350_296572_-|hypothetical-protein
MPQPICTLAVTTSAHDGRAESEPDDVGNRRRYHFYDRTLPFGEECVVTLDTCGRHNPKALLPACLWRISSGSP
>NZ_AP017368.1|WP_096399274.1|296580_297147_-|4Fe-4S-dicluster-domain-containing-protein
MHEHIQVIADKCRACRRCEVACIAAHHNMTFKEAMKHRDELVSRVHVVKTDNFKASVRCHQCDNAPCCNVCPTGALQQEEGRIIVRVQFCVACKMCLAVCPYGAISLENIGMPHVDDDSETMAQRSRREVAVRCDMCQVWREQNGKKVTACMEACPARALFMIEPDGTVVELPPLEKKTAVEAAAKTF
>NZ_AP017368.1|WP_096399275.1|297151_297523_-|hydrogenase-maturation-nickel-metallochaperone-HypA
MHEASLVQGLLSTALTAMETHNTANPANQAMRIQEIECAMGLLSCVEPLTMTGCFELFAEGTPAEGATLTLRTTPLDCGCRICGNAFSLMQRHFVCPQCGSDEIHFSGGHGLTLMSLRIESEE

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Crispr_ID: NZ_AP017368_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP017368_2

1072019-1072107

Orphan

Consensus_repeat	Method
AAATGAAAAACCAAACGCAGGAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP017368_2

>merge|NZ_AP017368|2|1072019-1072107|CRISPRCasFinder
AAATGAAAAACCAAACGCAGGACGAAGGGAACGCGGCTTCCGGCGGAGCGAGTGAGACAAAGCCCAAAATGGAAAACCAAACGCAGGAC

>NZ_AP017368|2|2|1072019-1072107|CRISPRCasFinder
AAATGAAAAACCAAACGCAGGAC	GAAGGGAACGCGGCTTCCGGCGGAGCGAGTGAGACAAAGCCCA
AAATGGAAAACCAAACGCAGGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP017368.1\|WP_096399828.1\|1074281_1075574_+\|phosphoribosylamine--glycine-ligase	unknown	unknown	gnl\|CDD\|234856
NZ_AP017368.1\|WP_096399834.1\|1079884_1082470_+\|mechanosensitive-ion-channel	unknown	unknown	gnl\|CDD\|225803
NZ_AP017368.1\|WP_096399819.1\|1063850_1065263_+\|cardiolipin-synthase	unknown	unknown	gnl\|CDD\|234967
NZ_AP017368.1\|WP_096399831.1\|1077100_1077526_-\|GtrA-family-protein	unknown	unknown	gnl\|CDD\|377229
NZ_AP017368.1\|WP_096399832.1\|1077565_1078717_-\|DegT/DnrJ/EryC1/StrS-family-aminotransferase	unknown	unknown	gnl\|CDD\|99740
NZ_AP017368.1\|WP_096399827.1\|1072590_1074267_+\|VCBS-repeat-containing-protein	unknown	unknown	gnl\|CDD\|379232
NZ_AP017368.1\|WP_096399825.1\|1070296_1071010_-\|AMIN-domain-containing-protein	unknown	unknown	gnl\|CDD\|378705
NZ_AP017368.1\|WP_096399818.1\|1060258_1063828_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223715
NZ_AP017368.1\|WP_096400564.1\|1083429_1085871_-\|PBP1A-family-penicillin-binding-protein	unknown	unknown	gnl\|CDD\|227342
NZ_AP017368.1\|WP_096399824.1\|1069490_1070294_+\|pyrroline-5-carboxylate-reductase	unknown	unknown	gnl\|CDD\|237008
NZ_AP017368.1\|WP_096399823.1\|1068113_1069439_+\|S41-family-peptidase	unknown	unknown	gnl\|CDD\|223864
NZ_AP017368.1\|WP_096399817.1\|1058982_1059123_+\|CcmD-family-protein	unknown	unknown	gnl\|CDD\|275184
NZ_AP017368.1\|WP_096399821.1\|1067088_1067448_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|374648
NZ_AP017368.1\|WP_096399816.1\|1057577_1058255_+\|heme-exporter-protein-CcmB	unknown	unknown	gnl\|CDD\|225260
NZ_AP017368.1\|WP_172414418.1\|1076138_1077101_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133039
NZ_AP017368.1\|WP_172414417.1\|1058255_1058939_+\|cytochrome-c-biogenesis-protein-CcsA	unknown	unknown	gnl\|CDD\|273492
NZ_AP017368.1\|WP_096399820.1\|1065541_1067092_-\|capreomycidine-hydroxylase	unknown	unknown	gnl\|CDD\|224512
NZ_AP017368.1\|WP_096399833.1\|1079099_1079735_-\|thiamine-phosphate-synthase	unknown	unknown	gnl\|CDD\|238317
NZ_AP017368.1\|WP_096399829.1\|1075583_1076084_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	unknown	unknown	gnl\|CDD\|376377
NZ_AP017368.1\|WP_096399835.1\|1082488_1083358_-\|tRNA-(adenine-N1)-methyltransferase	unknown	unknown	gnl\|CDD\|225317

Protein	Function_ID	Function_description	E-value
NZ_AP017368.1\|WP_096399828.1\|1074281_1075574_+\|phosphoribosylamine--glycine-ligase	gnl\|CDD\|234856	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional.	0
NZ_AP017368.1\|WP_096399834.1\|1079884_1082470_+\|mechanosensitive-ion-channel	gnl\|CDD\|225803	COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane].	1.64333e-63
NZ_AP017368.1\|WP_096399819.1\|1063850_1065263_+\|cardiolipin-synthase	gnl\|CDD\|234967	PRK01642, cls, cardiolipin synthetase; Reviewed.	1.42403e-104
NZ_AP017368.1\|WP_096399831.1\|1077100_1077526_-\|GtrA-family-protein	gnl\|CDD\|377229	pfam04138, GtrA, GtrA-like protein. Members of this family are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. The GtrA family are a subset of this family. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved is in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyzes the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b). This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose.	3.28829e-09
NZ_AP017368.1\|WP_096399832.1\|1077565_1078717_-\|DegT/DnrJ/EryC1/StrS-family-aminotransferase	gnl\|CDD\|99740	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein encoded by gene pglA, is a galactosyltransferase involved in pilin glycosylation. Additionally, this CD consists of ArnB (PmrH) aminotransferase, a 4-amino-4-deoxy-L-arabinose lipopolysaccharide-modifying enzyme. This CD also consists of several predicted pyridoxal phosphate-dependent enzymes apparently involved in regulation of cell wall biogenesis. The catalytic lysine which is present in all characterized PLP dependent enzymes is replaced by histidine in some members of this CD.	5.66167e-106
NZ_AP017368.1\|WP_096399827.1\|1072590_1074267_+\|VCBS-repeat-containing-protein	gnl\|CDD\|379232	pfam13517, VCBS, Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella. This domain of about 100 residues is found in multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion (TIGR).	1.56297e-12
NZ_AP017368.1\|WP_096399825.1\|1070296_1071010_-\|AMIN-domain-containing-protein	gnl\|CDD\|378705	pfam11741, AMIN, AMIN domain. This N-terminal domain of various bacterial protein families is crucial for the targetting of periplasmic or extracellular proteins to specific regions of the bacterial envelope. AMIN is derived from the N-terminal domain of AmiC, an N-acetylmuramoyl-l-alanine amidase of Escherichia coli which localizes to the septal ring during division and plays a key role in the separation of daughter cells. The AMIN domain is present in several protein families besides amidases suggesting that AMIN may represent a general targetting determinant involved in the localization of periplasmic protein complexes.	1.13308e-09
NZ_AP017368.1\|WP_096399818.1\|1060258_1063828_+\|hypothetical-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.93139e-12
NZ_AP017368.1\|WP_096400564.1\|1083429_1085871_-\|PBP1A-family-penicillin-binding-protein	gnl\|CDD\|227342	COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane].	0
NZ_AP017368.1\|WP_096399824.1\|1069490_1070294_+\|pyrroline-5-carboxylate-reductase	gnl\|CDD\|237008	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed.	1.17006e-77
NZ_AP017368.1\|WP_096399823.1\|1068113_1069439_+\|S41-family-peptidase	gnl\|CDD\|223864	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane].	6.79045e-118
NZ_AP017368.1\|WP_096399817.1\|1058982_1059123_+\|CcmD-family-protein	gnl\|CDD\|275184	TIGR04391, hypothetical_protein, CcmD family protein. Members of this protein family are small (typically less than 50 amino acids in length), with the first half highly hydrophobic like transmembrane alpha helices and containing a nearly invariant tyrosine residue. Members from the Desulfovibrionales appear in the position of ccmD of system I c-type cytochrome biogenesis operons (see pfam04995). This family and pfam04995 appear very similar in sequence properties, but the very low level of actual sequence identify makes it unclear that the similarity reflects homology per se.	3.15638e-05
NZ_AP017368.1\|WP_096399821.1\|1067088_1067448_-\|hypothetical-protein	gnl\|CDD\|374648	pfam16587, DUF5061, 17 kDa common-antigen outer membrane protein. This is a bacterial domain of 17 kDa common-antigen proteins.	2.79807e-30
NZ_AP017368.1\|WP_096399816.1\|1057577_1058255_+\|heme-exporter-protein-CcmB	gnl\|CDD\|225260	COG2386, CcmB, ABC-type transport system involved in cytochrome c biogenesis, permease component [Posttranslational modification, protein turnover, chaperones].	6.69489e-13
NZ_AP017368.1\|WP_172414418.1\|1076138_1077101_-\|glycosyltransferase	gnl\|CDD\|133039	cd04196, GT_2_like_d, Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	1.53438e-36
NZ_AP017368.1\|WP_172414417.1\|1058255_1058939_+\|cytochrome-c-biogenesis-protein-CcsA	gnl\|CDD\|273492	TIGR01191, Heme_exporter_protein_C, heme exporter protein CcmC. This model describes the cyt c biogenesis protein encoded by ccmC in bacteria. It must be noted an arabidopsis, a tritcum and a piscum plant proteins were recognizable in the clade. Quite likely they are of organellar origin. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes, ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in the heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other].	8.79116e-32
NZ_AP017368.1\|WP_096399820.1\|1065541_1067092_-\|capreomycidine-hydroxylase	gnl\|CDD\|224512	COG1596, Wza, Periplasmic protein involved in polysaccharide export, contains SLBB domain of b-grasp fold [Cell wall/membrane/envelope biogenesis].	3.24049e-13
NZ_AP017368.1\|WP_096399833.1\|1079099_1079735_-\|thiamine-phosphate-synthase	gnl\|CDD\|238317	cd00564, TMP_TenI, Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.	7.88303e-77
NZ_AP017368.1\|WP_096399829.1\|1075583_1076084_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	gnl\|CDD\|376377	pfam00731, AIRC, AIR carboxylase. Members of this family catalyze the decarboxylation of 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR). This family catalyze the sixth step of de novo purine biosynthesis. Some members of this family contain two copies of this domain.	7.9846e-69
NZ_AP017368.1\|WP_096399835.1\|1082488_1083358_-\|tRNA-(adenine-N1)-methyltransferase	gnl\|CDD\|225317	COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis].	2.39811e-83

>NZ_AP017368.1|WP_096399825.1|1070296_1071010_-|AMIN-domain-containing-protein
MNKVIISLLVAVCVLGMALVMLNEKMGSKTDPLKTKAEIGTTASPQDDAASVLPQEQVAPDALVAAPSQHAKPAPTAPPLPEDSEMDKADKALAAASALQPDRQQAAPAAKTQGTGPSGKNATYGKPVAGKKAAPVNPPTRLAVFVRDKGATVRLTSHRPPIRYKTMNLTNPERVVVDVEGLDALKAPGVPKNPLVTNVRVGRIEKGTRIVIDLSTKPKHTRFVLSNEGDTLNIRLY
>NZ_AP017368.1|WP_096399824.1|1069490_1070294_+|pyrroline-5-carboxylate-reductase
MNKVIGCVGCGNIGGAILTGLTAKLASSYSFCGFNRTLERMRPLEEKGVAVKTDALALARDTDIIILAVKPRQAAEVLKTMRPALTRDKILISVAAGVGVQRLKQDSGGQCPVVRCMPNTPALIGAGIFALCLEDAGLSPGIKEEVLAVFSALGLCVTLPETSFTAFSALIGAGPAYVFQMMQGFVQAGVTLGFAHREARELVTAMFAGSARLAAQRPAPLMQLRDEVCSPGGLTIAGVNHLDRAGLVGVIVDAVLAADARGREMEQ
>NZ_AP017368.1|WP_096399823.1|1068113_1069439_+|S41-family-peptidase
MCVFVRICILELFLACITLAVMTTAPAAADKKEPAKEAPSKYDVLKRFSQVLDLVERHYVKDVTQSVLINGAVKGLLQGLDPHSTFMNAAEYKELQQNTSGEFFGVGIEISLENSQIVVVTPIEDTPAFRAGMQTGDVILSINGQATQELSLQEVVSRIRGPKGSEVELTILHSDAKTPQTVRIVRDSIPLISVKSKKLDDGYYWVRLTRFSERTTEELKDTLKAAEKESKANGGIKGIVLDLRNNPGGLLDQAISVSDVFLQRGVIVSIKGRKEHTGNAYEAENQPDDTRAPMVTLINAGSASASEIVAGALRDQKRALILGERSFGKGSVQKIIPLADGSGLKLTVALYYTPNGNSIQAEGIVPDMEVPFENPRSDDKDNPRFQVREQDLNRHLENGKNKKSKNTNNNDEGKEQLARDNQLRMALQIVKNLPKMQEIKP
>NZ_AP017368.1|WP_096399821.1|1067088_1067448_-|hypothetical-protein
MNNLFPSLSKLLPPLALVLLIILSGCGLTADAPALSPSLGPVEAFMISAEPGQSAQLDDPVFGTDVRVSLEGTFTSAKGENCRRATVLADGKKAEVAVTCRDAAGQWTLAPRVWGEGGI
>NZ_AP017368.1|WP_096399820.1|1065541_1067092_-|capreomycidine-hydroxylase
MTMRRFCLTLALLCLLPAAASLANDELNPYGANLFQGNFSRNAGADAFMPGDRAVVRVWGGRHTVDDIFAVDSDGLLTLPGIGALPVAGIPRNKIVDDLRSKLAAAGQSDAQIYVAPLDTGTVSVFVTGGVVRPGRYQNSSGDSPLAFLDRAGGIDPACGSYRAIRLVRNGAVVLTLDLYPFARRGELAPVRMQDGDTLVVDNKGPSVVAAGAVRNPARFEFLKGQATGAALVELAEPEKRASHASVSGTRNGSPYNTYLPVRDLLHLQLEDGDSIQFFADATGNAVFVSVEGAVRGASRFPVRRGAKLKDVQNFIAVEPERANLAAMYVKRRSVAARQKKAIADSLRRLEESALTASSASAEEAQIRSKEAEMLMKFVERAKSVEPEGVVVLDNGNDNGNLVLEDGDVIVIPPKSDVVLVSGEVMAPQAMLWSKKKSLGDYIKGAGGYGARADRDNVLIMRQNGAVSRDGDDIASGDQVLVLPKAESKSMQAMKDISQVLMHTAVSARAVLGLPY
>NZ_AP017368.1|WP_096399819.1|1063850_1065263_+|cardiolipin-synthase
MLLLETLGLSAGYAISWIAICHALLTKRDPRSALGWTATALLLPFVGPLLYVLFGMSRAESRANRMMRHLAAVQPDYAHPDFPTAPPEHIPEHIAAAELVGRRLTNLHLSDGNAVTPLHNGDEAYPAMIAAIRKAEHHVYLTTYIFNAGMSGSAFVKALSNAADRGADVRVLVDGIGSHYSRDKPWKKLAARGVRVELFLAPCLFPPNLNINLRNHRKILICDNTAFTGGMNISDNNLQNCQKNRVQDIHFHCQGPVVHQLRRAFLLNWGFTTGKYDPLVFDMPESAGESRCRIVMDGPGSDTEVLNELFCGVISSAQHSVRIMTPYFLPSHDIMACLRSAAYRGVAVKIALPAKNNLPYVHWAMFRLLPNLLTAGVRIWLQPPPFTHTKLLTVDDFYCQIGSANMDARSLHLNFELNMEIFDQVLHAELAGHIDSTLARSREISLADLSRQPMPVKLRNAACWIFSPYL
>NZ_AP017368.1|WP_096399818.1|1060258_1063828_+|hypothetical-protein
MRGAGADDTKMTRTTNLSGRYLQAAHMTSTMRPILYWSILLLCAIFLFPRATAAAMPLQPEMPQAGNLPFLPCLDYFLDGTGDMDVEEVAAPGNTQAFHPLILQKLPRESAVMWLRFTLAPLPEKTRPTAVLLDMGESVPGAPVLYAPIVNPVNGAPEWGETPIARRAAVLLPEARKEALTCFIRMEGLPGPWFSPALRTPQDAANKAWSNFSRTAAALALAVVMVLCLLRALTEKGQWRLWTALYVGAALAQSVAGMPAFGNDRPGISEAAALLLPGIALMLLSHAGRHLLGGKSRALDIQFLLLSLPGTALAILPLLPWFSWTARYVDLWPAGTLLFAPSALRACIMGIPGGKRFLLACLLSALFTAAGVLFPAGGFSATLLAAAPLWGTALGAMLIATTTALGDREKSASTTSAGAATTSMTTRYDLGEPLDDPNLRLVLPQTGDAPKSGASPAAAASDTLRIPLEYLMREGAALEHCALPPAVRQYVKNMLDAAKEMTRIISATPQTAQQTDRRVFNLQQLMREVHDSTSSMAQAAGIGLAWYMPPHLGHTYEGEAEAISETLSLLLESAVHATQRGAVQFSVRRVPESADAGHLLFTVQDTGAGMPPQNRSSLALTRTWELAGAHNGFLGLECGPQGTTIAFTLHLNYLEMEGSELAWENLPHVIITAEGAVDRQLLAHMLKSLPCRSSEVRGLHEALQIHQTNPALLLIAQGQFVNAAPSLLQQFTEQAKAASLPFCKFLAITKDDSHWDDMAHTGFTHALLEPVDSEAFCITVKEILHEAAADKMSAVKAVAPDELLELPQMSEKVSTSTDSPVPGYNASPAQKSAATPVGRPPLPDLFSADAPPGETSSVKIPDLTALPDLLSFAESLRNNPPKGAADKGTAKQKGSLFGGFPDTEPLSLLDMSPKMDAGLQAARAILSKTEKPAETLSPASQEQPAAPSPPEQTHPTATKPGLRRHLSSAAMPQPAQPPRIVPANASTAGTQTQQQRTTTKTVEGMAAAPAPCGTASFMDFIAGTTSASSRTQTVQGVSVPTADNMTSSPPGQPHAPLPSKPLSVTGQTAVTHADPVRHDAGQTQSNEPQDKASRQRQITDSTMLLLVEHLDRAIEDAQSAFAQRRAPMVGDAARRIAAESDNYGLRVLARMARCVERAARASDMNALGDLLPELVAAVERNRIALTPRE
>NZ_AP017368.1|WP_096399817.1|1058982_1059123_+|CcmD-family-protein
MDNTLVWVIITNAVIWIGLGAYLIFLALQQHDLAARLTQWETLRHG
>NZ_AP017368.1|WP_172414417.1|1058255_1058939_+|cytochrome-c-biogenesis-protein-CcsA
MRSLSIVPAMLVLSGSLTFACCQWLIYSYAPTEATMGLAQKIFYIHLPLAWWALFSFFLVFVGSVSYLLKRTPGADRLCAAAAETGVLLSGLALVTGTLWARKAWGVWWTWDPRLTTTLIMWFIYAGYLVLRGLNPPPQRKSLVCAVVGIVAFLDVPLVFVSARIWRSIHPAVFAAKGGGLEPEMKLTALGCVVSFGLFWAGLLWLRKRQLDLYDRLDTLASAAPQQ
>NZ_AP017368.1|WP_096399816.1|1057577_1058255_+|heme-exporter-protein-CcmB
MLRLTLAVARKDLSLTLWRGNGLMQALLLGLLLFFVFSLSQEVGENLSPQSAAAVFWLSSTFCQVLIFNQLYALEEINNSHLGLLLSPAPILAVWLGKAIAGFVLLLFAQLLFLPAAVVFLGQSLHGPLPPAVAILLLVDTGMCALGSLLGALAQGQAASESLLSIVLFPLLTPLLLAGIGVDAQTFGNHSSNGPDAWMGIACAFDAIFLAVGLLLFSFIYAGEE
>NZ_AP017368.1|WP_096399827.1|1072590_1074267_+|VCBS-repeat-containing-protein
MKTFLRLFIAVLLLLVVWLPATANAVSKSVILSPFSITAPQSYAYLSKAVPATIQAGLNRPGVLEARPVQIKISSLAEARKARNAQHADYVVWGVVTVLGNECTVEVNSSDRDGKTWSKTGQGPVSGLTATVQNLAAALSSEALGLPGMAYAGQQGEGQMINRMNSDIVVNETGQQQVYLNPQFRYQGAWANDASRLRTQRLPNKMVDMAVGDFNGDGKNEIAVLGDHKLIIYAWSANGKLKPLGETVVSRSNLNFSMRAVDINRDGVKDLVIATYEQDSNRPYSYFYTFAGNKLAECAERVPYFASVVSTPPNFAPTLVGQGWDSIKLFAPDVRVMEKHGAKLTLGSRLDLPEGAKVFNICWLPGDKNSKGDQLVMLTDDERIKLFQGSGNTLIHTTIERFSGSATGMEHYKGMPGLDPDRNYQLPGKYYASMRLITADLGHTGEYVLLINKPISTASQLFDRYRYFPQGEIHALYWDGVGLALKWKTRRIRGSVASVDLADANNDGVLDLVVGLNTSPDLGVGSRQCMITAYPLDISQTNPNVPADLSDFEVTPNQ
>NZ_AP017368.1|WP_096399828.1|1074281_1075574_+|phosphoribosylamine--glycine-ligase
MRILVIGSGGREHALVWKLGQSPQTEKIFAAPGNGGTKGEGAVNTAVAANDIDGLVALARREKIDLVVPGPELPLTLGIVDRLREAGTACFGPDAYCARIEGSKAFAKQIMKKAGVPTAKSVVFSDVEAAKKYVVKFGAPLVIKADGLAAGKAVVVAKDSQHALQAVDDIMFARVFGAAGDRVIIEECLWGEEVSLLCFCDGESAVPLPSAQDHKAAFDNDQGPNTGGMGAYSPAPVLPDDGLDKMADLAVRPVLKALAEDGHPFVGVLYAGLMITADGPRVLEYNARFGDPECQPLLARLNGDLVQIMMDCINGRLDPASIAYTGQTALSVVLAARGYPRACAKGLLIKGIAEAEGICGVKVFHSATVEKDRALISSGGRVLCITVLGDGLPDARKKAYEALDKIRVPNSFYRKDIGEKGMRHLLSTTT
>NZ_AP017368.1|WP_096399829.1|1075583_1076084_+|5-(carboxyamino)imidazole-ribonucleotide-mutase
MSRVVILMGSKSDEEKISPCTEILQDLGISFVMTVSSAHRTPERTRALVRGQEVAGAGVFICAAGMAAHLAGAVAALTTRPVIGIPVSRGVLAGMDALFSTVQMPPGFPVATVALDKAGAYNAAWLAAQILALADPDLDNRITAARKRMRLDVEKAGEEISRKYSM
>NZ_AP017368.1|WP_172414418.1|1076138_1077101_-|glycosyltransferase
MPPAVSVIMNCLNGARYLRPALESLFAQTFEDVELIFWDNASTDESHDIVQDFSARFPDKIRCFRGADTVSLGTARNLALACARGRYLAFLDCDDLWRPQKLAEQVALFETGSRVGLVCTDTEIFDGSRVLKRLFAETRPARGMVFSELMERQWISMSSAMLRREALQGLTDEGKTDFFDESLNVCEEADVFYRIAYDWELDFVDRPLTRWRMHGANSTFRKFGQFADETLRILNKHCRIYPGYAVEHADLVALLTRRAAFQKAVSLWREGRNRHARVTIAPWKNASLKHRLFWWASFLPGACFDIAARAYFAMPAALRR
>NZ_AP017368.1|WP_096399831.1|1077100_1077526_-|GtrA-family-protein
MITHRWDDLRDFTRALLASRLTRFVMMGGAATFYYVLFGLLFVNTCGLPVLFGNAPAYFVGFFVFWAGQNSWTFQAKVIHKTMLPHYVAVHLTGLGINSVLVWLLMHYKPAMLVAALFVAVSAYLLCNRFVFQNASAGKYA
>NZ_AP017368.1|WP_096399832.1|1077565_1078717_-|DegT/DnrJ/EryC1/StrS-family-aminotransferase
MALRLSRSIVGKAEADAVSRVLLEDGYLGMGNEVRLFEEELAAYLGVLPTQVIAVNTGTAALHLALEALAALRDAAGGEVLVPSLTFLASFQAVTAAGLRPVACDVLRETGTLDINDAEKRLTVKTFAVMPVDYASNPWHLDEVHDFARRKGIRVVEDAAHAFGCVHGGRKIGSFGDMVCFSFDGIKNITSGEGGLVVAFDAQAARLVSDARLLSVENDAEKRFAGIRSWDPDVKRQGWRYHMSNIMAAIGRVQLARLDTEFAPARRALAALYKERLSGLDGIVFLQTDPDDNIVPHILPARITDGRKDPVKQALARVGIPTGVHYKPNHLLSFFGGGAVRLPAAEQLHAELVSLPLHPGLSRQDVESVCKAIRETLATVSVT
>NZ_AP017368.1|WP_096399833.1|1079099_1079735_-|thiamine-phosphate-synthase
MPAFLPNETDLYAITDARLCRGRPLADVARALLDAGVRILQYREKKLKAGKMLEECRLLRRMTLEAGACFIVNDHIDIALLVEADGVHIGQEDLPVPEARRLMGQQAIIGLSTHTPEQAVAAVAAGADYIGVGPIFATQTKEDVVAPVGCAYLDWAARNRALPFVAIGGIKEHNIGEVARHGAYCCALVSELVGALDIAAKVAAVRRAMHA
>NZ_AP017368.1|WP_096399834.1|1079884_1082470_+|mechanosensitive-ion-channel
MDERVLRCCVAVLFFLLSQSFTQFCFAATPQTPPTQPAAQADGKKDESAKHVPDQVDTWESVWASQRDMLNEINEKAAIMREKFAKDAAGLTKKTPLFEEEARRLLVLVNNFQEWPNPMEAVSRRIASTMLEERQDLEPLILGRAEVQALLDRVSYLADSLPEDVRGGRVDAEMQAYVKDIAQAKSRLAAVLAKYDSSLGPYMTLLERLEKTRADIASRLPVLWKDYYLQDPVPWLSLETWEEIPQNMRYSVQSMVLRQAVEMPVAAEQWVTAGLRFALCLCFTCVAKFLLGRRLLTPTSSPAGRHIFQISLPCLCLGFSLAASSISTGGEFFRLLLALGNLGIIAGQIFLAWDMRLLKNPEAGVSRAPLWRLMPLTFCAYTLLYLPLAKPLTLVLWTALVAVSLVRLRRQRAEEASSLQLECGILECEPVALWFCLALSLLGLHIYSMTLYLFFVSSSLALELCLGSMGLISEFNGRLPSEGARAAVAHLLIALAAPVVLVTAVTGVLLWVGTLPGGMYLLKEYLLKGVNVGATQFNIIQLLLIISAFYLTRAAVSMGTRLLSKLPGQGLEIDSTLIPPMQTALTYLVWCFFGLFALRSLGMELSNLAMVAGGLSVGIGLGMQTIVNNFISGLILIFSRTLQAGDVVEVDGVTGRVRKISVRATMVETYDNALIYVPNSEFVSSRLTNWTRNSRSVRREISLGVAYGSNTELVMKLMLGIASGHRNVLKYPAPSIAFADFGVSTLDFSLHFWVKDYDVGVSTSSDIRLEIEKQFRQHRIEVAFPQMDLHIKEMPPRVKIPQQPAERRGVACGRLKRPASRGTHYCGRSKIWRAGKAWANASVVQRDSNTGGRSRGERLAF
>NZ_AP017368.1|WP_096399835.1|1082488_1083358_-|tRNA-(adenine-N1)-methyltransferase
MIPYGSLIVYVTPRGRRYIKRLVEGTSWHSNNGAVTAEQVSSLDFGAQTQTSLSVPIRVQEATLFDRLLHVKRQTQIIYPKDIAYICLRLGAGPGRTILEAGSGSGGLTLGLSWFCGPTGRVVSHEAREEFLLLARRNLEWAGLGGNVELHHKDIADGFAAAGADALFLDVRTPWEYLTPAAAALRPGATLGFLLPTTEQVGKLLLGLEQGPFAETEVCEILIRYWKPVADRLRPEDRMIAHTGFLIFCRLQVRSEAFERLRPLGTRERKQQTARLARQSEASSSDDSG
>NZ_AP017368.1|WP_096400564.1|1083429_1085871_-|PBP1A-family-penicillin-binding-protein
MSSKFSWKKAMRWFFFLLLFCGSAGCGVAALLFYWASRDLPDITPIADYNPPQATTILARDGSTLGVLSHEKRYVISLAEMSRFLPLAFLAAEDDAFYRHFGVAPTAIVQAAMINFRTGTKGHGGSTITQQAIKQLLLTSERTYTRKIKEVLLACRLEKILSKDEILSIYLNQIYLGEHAYGVEAAARTYFGKHAADITLAESAVIAGLPKAPSSYNPFRHPKETKNRQMYVLGRLQDLAWITPEEYLQAAVEPLVYWSVTESMGGASLWYMEEVRRLLIEFFTEKNLKAIGVDTLKYGEDYVYEAGLTVRTAMAPTHQDAAGQALRQGLEELDKRQGWRGPLGQLDEQGRSVFLAETVFAPLDLAGGAWVTALVTDVSTAEARVALGQGYTGVIPAANLSWARKPNPKVAGMYAPPVKDVRQALKPGDLIWVSAADQVVVTTDARDRKEKQGRPYDPAEVQKNKPVPLLLQQEPAVQGALASLEPQSGDVVALIGGYNFGDSYFNRATQSRRQPGSSFKPVVYSTALDFGFTPSSTVLDAPFVYVNPWTNKFWRPSNYEHDYKGELPLYQALAFSRNTCTVRIAQRVGVANVIQRAKALGLEPHFPEELAVSLGAVAVSPLNLTQAYAAFANQGLGVRPRIITSIEDTAGRVLYRQDEEHWQAISPQNAYMMATLLKNVVNAGTGTRARIDGRFIAGKTGTSNEEHDAWFMGFTPYLVTGVYVGYDQLQSLGRQEQGGRTAAPVFRNYRAKVEDLYAAQDFVMPEGIVMSGGFAYRADMPLQGIAATDVQTAVDDAGAKTSEGGEDLMRQMF

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_AP017368_1	1.19\|288896\|35\|NZ_AP017368\|PILER-CR,CRISPRCasFinder,CRT	288896-288930	35	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	400048-400082	7	0.8
NZ_AP017368_1	1.4\|287911\|34\|NZ_AP017368\|PILER-CR,CRISPRCasFinder,CRT	287911-287944	34	NZ_CP007797	Azospirillum brasilense strain Az39 plasmid AbAZ39_p4, complete sequence	231222-231255	9	0.735

1. spacer 1.19|288896|35|NZ_AP017368|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.8

aatgtcctcgtcgtcgaaccgattgacagccgcga	CRISPR spacer
aatggcctcgtcgtcgaaacgattgacttgctgga	Protospacer
**** ************* ********   *  **

2. spacer 1.4|287911|34|NZ_AP017368|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007797 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p4, complete sequence) position: , mismatch: 9, identity: 0.735

ggcttcgaggacgtgcgcctgctggtacgctcac	CRISPR spacer
ggcttcgacgacgtgcgcatgctgctccaggtgc	Protospacer
******** ********* ***** * *.  ..*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1119269 : 1129282

Staphylococcus_phage(37.5%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096399859.1\|1119269_1121786_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	4.6e-193	43.3
WP_096399860.1\|1121891_1122365_-	transcription antitermination factor NusB	NA	NA	NA	NA
WP_096399861.1\|1122368_1122845_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	6.3e-27	41.9
WP_096399862.1\|1123196_1123850_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	3.5e-28	35.2
WP_172414438.1\|1123880_1124987_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	1.4e-32	30.0
WP_096399864.1\|1125006_1125486_-	cytidine deaminase	A7KUY9	Bacillus_phage	1.0e-24	44.1
WP_096399865.1\|1125501_1126740_-	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	2.8e-95	52.4
WP_096399866.1\|1126860_1128108_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_096399867.1\|1128220_1128457_-	acyl carrier protein	E3SSM9	Prochlorococcus_phage	5.7e-05	48.5
WP_096399868.1\|1128511_1129282_-	3-oxoacyl-[acyl-carrier-protein] reductase	Q06VL0	Trichoplusia_ni_ascovirus	4.0e-15	30.3

DBSCAN-SWA_2

1266449 : 1280968

Tupanvirus(22.22%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096400057.1\|1266449_1269140_-\|tRNA	alanine--tRNA ligase	A0A2K9L3D8	Tupanvirus	6.4e-76	36.5
WP_096400059.1\|1269155_1270244_-	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	3.1e-106	58.0
WP_096400061.1\|1270466_1271252_+	ParA family protein	H7BUL8	unidentified_phage	5.9e-22	28.8
WP_096400063.1\|1271288_1272257_+	ParB/RepB/Spo0J family partition protein	S5VTK0	Leptospira_phage	8.9e-12	30.5
WP_096400065.1\|1272226_1273213_-\|tRNA	methionyl-tRNA formyltransferase	NA	NA	NA	NA
WP_096400067.1\|1273185_1273704_-	peptide deformylase	E3SLL2	Synechococcus_phage	6.0e-15	38.7
WP_096400603.1\|1273700_1275530_-\|tRNA	aspartate--tRNA ligase	A0A2K9KZX5	Tupanvirus	7.5e-20	23.4
WP_096400069.1\|1275534_1276794_-\|tRNA	histidine--tRNA ligase	A0A2I2L577	Orpheovirus	1.0e-15	25.6
WP_096400605.1\|1276826_1278233_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.6e-44	31.7
WP_096400071.1\|1278460_1280968_-	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	3.1e-101	33.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_AP017368

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection