CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_AP015032	Pseudomonas putida strain KF715 plasmid pKF715C, complete sequence	0 crisprs	NA	0	2
NZ_AP015029	Pseudomonas putida strain KF715 chromosome 1	4 crisprs	RT,WYL,DEDDh,cas3,csa3,DinG	0	10
NZ_AP015030	Pseudomonas putida strain KF715 plasmid pKF715A, complete sequence	2 crisprs	RT,Cas14u_CAS-V,csf3gr5,csf2gr7,csf1gr8,csf5gr6,DinG	11	1
NZ_AP015031	Pseudomonas putida strain KF715 plasmid pKF715B, complete sequence	0 crisprs	csa3,RT	0	0
NZ_AP015033	Pseudomonas putida strain KF715 plasmid pKF715D, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

66710 : 77112

Pseudomonas_phage(55.56%)

terminase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_157754477.1\|66710_67472_-\|terminase	terminase small subunit	I6NV32	Burkholderia_virus	2.6e-27	37.1
WP_157754478.1\|68275_68968_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_096427271.1\|69375_69738_-	DUF1064 domain-containing protein	A0A248SL54	Klebsiella_phage	1.6e-30	64.7
WP_096427227.1\|69908_70181_-	hypothetical protein	NA	NA	NA	NA
WP_096427228.1\|70177_70435_-	hypothetical protein	NA	NA	NA	NA
WP_096427229.1\|70434_72213_-	DEAD/DEAH box helicase	A0A2K8IBK8	Pseudomonas_phage	1.3e-274	77.4
WP_096427272.1\|72209_72575_-	hypothetical protein	A0A0U1UNQ6	Pseudomonas_phage	3.3e-36	65.3
WP_096427230.1\|72736_73732_-	hypothetical protein	A0A218L3S6	Pseudomonas_phage	8.3e-13	27.9
WP_096427231.1\|73728_74466_-	hypothetical protein	A0A2H4JG78	uncultured_Caudovirales_phage	1.5e-06	43.7
WP_096427232.1\|74458_74995_-	DUF1382 family protein	W6MW43	Pseudomonas_phage	7.6e-05	44.6
WP_096427233.1\|74991_76683_-	hypothetical protein	A0A2H4J7T1	uncultured_Caudovirales_phage	2.6e-27	35.2
WP_096427273.1\|76746_77112_-	Arc family DNA-binding protein	A0A1W6JTB4	Pseudomonas_phage	1.1e-07	56.4

DBSCAN-SWA_2

83041 : 93451

Pseudomonas_virus(20.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096427249.1\|83041_83536_-	DUF1643 domain-containing protein	B5WZV8	Pseudomonas_phage	4.8e-46	59.8
WP_172901777.1\|83532_83841_-	hypothetical protein	A0A1B1P7B7	Bacillus_phage	9.7e-05	34.5
WP_096427251.1\|84941_85571_-	hypothetical protein	A0A2H4JC30	uncultured_Caudovirales_phage	2.0e-25	37.3
WP_096427252.1\|85567_85984_-	DUF2591 family protein	NA	NA	NA	NA
WP_096427253.1\|85971_86403_-	hypothetical protein	R9TRR2	Rhizobium_phage	3.1e-25	44.9
WP_096427254.1\|86399_87017_-	hypothetical protein	Q5QF30	Pseudomonas_virus	2.4e-18	33.9
WP_096427255.1\|87055_87352_-	hypothetical protein	NA	NA	NA	NA
WP_096427256.1\|87341_87701_-	hypothetical protein	A0A240F4V4	Ochrobactrum_phage	2.4e-15	40.8
WP_157754479.1\|87697_88345_-	hypothetical protein	NA	NA	NA	NA
WP_096427258.1\|88334_88628_-	hypothetical protein	NA	NA	NA	NA
WP_096427259.1\|88624_88981_-	hypothetical protein	NA	NA	NA	NA
WP_096427260.1\|89182_89587_-	recombinase	A0A222YXV2	Escherichia_phage	2.1e-07	35.7
WP_096427261.1\|89583_90732_-	hypothetical protein	A0A1C9LVZ5	Vibrio_phage	4.7e-12	43.6
WP_096427262.1\|91184_91661_-	hypothetical protein	NA	NA	NA	NA
WP_096427263.1\|91813_92341_+	single-stranded DNA-binding protein	I3PGW4	Xanthomonas_phage	2.8e-44	70.1
WP_096427264.1\|92344_92527_+	hypothetical protein	NA	NA	NA	NA
WP_096427265.1\|92530_93451_+	recombination-associated protein RdgC	L7TP07	Pseudomonas_virus	2.4e-107	64.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_AP015029

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CRISPR-Cas detection and classification

Crispr_ID: NZ_AP015029_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP015029_1

881153-881264

Orphan

Consensus_repeat	Method
TCGAGCCTTCTGCAGTCCCTGTGGGAGCGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP015029_1

>merge|NZ_AP015029|1|881153-881264|CRISPRCasFinder
TCGAGCCTTCTGCAGTCCCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCAGTACAGGTAACTCACAGGGACTGCCCAATGCTCGAGCCTTGTGCAGTCCCTGTGGGAGCGGG

>NZ_AP015029|1|1|881153-881264|CRISPRCasFinder
TCGAGCCTTCTGCAGTCCCTGTGGGAGCGGG	CATGCCCGCGAAGAGGCCAGTACAGGTAACTCACAGGGACTGCCCAATGC
TCGAGCCTTGTGCAGTCCCTGTGGGAGCGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP015029.1\|WP_059396030.1\|880458_881085_+\|DNA-3-methyladenine-glycosylase-2-family-protein	unknown	unknown	gnl\|CDD\|223200
NZ_AP015029.1\|WP_096425565.1\|872350_872926_+\|DUF882-domain-containing-protein	unknown	unknown	gnl\|CDD\|311960
NZ_AP015029.1\|WP_016501521.1\|889439_889829_-\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|379209
NZ_AP015029.1\|WP_016501533.1\|874028_874643_+\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|273358
NZ_AP015029.1\|WP_059396031.1\|884968_886186_-\|DUF3422-domain-containing-protein	unknown	unknown	gnl\|CDD\|378758
NZ_AP015029.1\|WP_019471008.1\|877662_878820_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341030
NZ_AP015029.1\|WP_016501520.1\|891070_891691_+\|hydrolase	unknown	unknown	gnl\|CDD\|238494
NZ_AP015029.1\|WP_096425566.1\|874921_875848_-\|FecR-domain-containing-protein	unknown	unknown	gnl\|CDD\|226235
NZ_AP015029.1\|WP_096425569.1\|892651_893848_+\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|235131
NZ_AP015029.1\|WP_096425567.1\|882424_884836_+\|mechanosensitive-ion-channel-family-protein	unknown	unknown	gnl\|CDD\|225803
NZ_AP015029.1\|WP_061202954.1\|893887_894985_+\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|182881
NZ_AP015029.1\|WP_172901724.1\|877442_877580_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP015029.1\|WP_059396028.1\|878828_879785_-\|FecR-domain-containing-protein	unknown	unknown	gnl\|CDD\|236622
NZ_AP015029.1\|WP_059396032.1\|886402_887833_-\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143428
NZ_AP015029.1\|WP_049278070.1\|881315_882368_+\|bifunctional-DNA-binding-transcriptional-regulator/O6-methylguanine-DNA-methyltransferase-Ada	unknown	unknown	gnl\|CDD\|185333
NZ_AP015029.1\|WP_049274646.1\|887846_889346_-\|cytosine-permease	unknown	unknown	gnl\|CDD\|224374
NZ_AP015029.1\|WP_016501534.1\|872865_873783_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182990
NZ_AP015029.1\|WP_059396027.1\|876039_877254_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341031
NZ_AP015029.1\|WP_059396029.1\|879771_880287_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|171561
NZ_AP015029.1\|WP_096425568.1\|891796_892615_+\|polyphosphate-kinase-2	unknown	unknown	gnl\|CDD\|213852

Protein	Function_ID	Function_description	E-value
NZ_AP015029.1\|WP_059396030.1\|880458_881085_+\|DNA-3-methyladenine-glycosylase-2-family-protein	gnl\|CDD\|223200	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair].	3.74642e-58
NZ_AP015029.1\|WP_096425568.1\|891796_892615_+\|polyphosphate-kinase-2	gnl\|CDD\|213852	TIGR03707, PPK2_P_aer, polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1). [Central intermediary metabolism, Phosphorus compounds].	3.36735e-136
NZ_AP015029.1\|WP_016501521.1\|889439_889829_-\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|379209	pfam13474, SnoaL_3, SnoaL-like domain. This family contains a large number of proteins that share the SnoaL fold.	8.05814e-14
NZ_AP015029.1\|WP_016501533.1\|874028_874643_+\|LysE-family-translocator	gnl\|CDD\|273358	TIGR00949, Uncharacterized_membrane_protein_YahN, The Resistance to Homoserine/Threonine (RhtB) Family protein. [Transport and binding proteins, Amino acids, peptides and amines].	2.82193e-34
NZ_AP015029.1\|WP_059396031.1\|884968_886186_-\|DUF3422-domain-containing-protein	gnl\|CDD\|378758	pfam11902, DUF3422, Protein of unknown function (DUF3422). This family of proteins are functionally uncharacterized. This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 426 to 444 amino acids in length.	6.29415e-135
NZ_AP015029.1\|WP_019471008.1\|877662_878820_+\|MFS-transporter	gnl\|CDD\|341030	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MFS-type transporter YcaD, Bacillus subtilis MFS-type transporter YfkF, and similar proteins. They are uncharacterized transporters belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.86001e-75
NZ_AP015029.1\|WP_016501520.1\|891070_891691_+\|hydrolase	gnl\|CDD\|238494	cd01012, YcaC_related, YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.	5.05407e-71
NZ_AP015029.1\|WP_096425566.1\|874921_875848_-\|FecR-domain-containing-protein	gnl\|CDD\|226235	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms].	1.15441e-55
NZ_AP015029.1\|WP_096425569.1\|892651_893848_+\|cation:proton-antiporter	gnl\|CDD\|235131	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional.	1.14405e-125
NZ_AP015029.1\|WP_096425567.1\|882424_884836_+\|mechanosensitive-ion-channel-family-protein	gnl\|CDD\|225803	COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane].	1.52697e-168
NZ_AP015029.1\|WP_061202954.1\|893887_894985_+\|AI-2E-family-transporter	gnl\|CDD\|182881	PRK10983, PRK10983, AI-2E family transporter YdiK.	8.05281e-38
NZ_AP015029.1\|WP_096425565.1\|872350_872926_+\|DUF882-domain-containing-protein	gnl\|CDD\|311960	pfam08291, Peptidase_M15_3, Peptidase M15.	2.70713e-07
NZ_AP015029.1\|WP_016501534.1\|872865_873783_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	1.11768e-86
NZ_AP015029.1\|WP_049278070.1\|881315_882368_+\|bifunctional-DNA-binding-transcriptional-regulator/O6-methylguanine-DNA-methyltransferase-Ada	gnl\|CDD\|185333	PRK15435, PRK15435, bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada.	7.83375e-148
NZ_AP015029.1\|WP_049274646.1\|887846_889346_-\|cytosine-permease	gnl\|CDD\|224374	COG1457, CodB, Purine-cytosine permease and related proteins [Nucleotide transport and metabolism].	5.6713e-79
NZ_AP015029.1\|WP_059396028.1\|878828_879785_-\|FecR-domain-containing-protein	gnl\|CDD\|236622	PRK09774, PRK09774, fec operon regulator FecR; Reviewed.	2.26938e-69
NZ_AP015029.1\|WP_059396027.1\|876039_877254_+\|MFS-transporter	gnl\|CDD\|341031	cd17478, MFS_FsR, Fosmidomycin resistance protein of the Major Facilitator Superfamily of transporters. Fosmidomycin resistance protein (FsR) confers resistance against fosmidomycin. It shows sequence similarity with the bacterial drug-export proteins that mediate resistance to tetracycline and chloramphenicol. This FsR family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.17603e-99
NZ_AP015029.1\|WP_059396029.1\|879771_880287_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|171561	PRK12528, PRK12528, RNA polymerase sigma factor; Provisional.	1.83297e-56
NZ_AP015029.1\|WP_059396032.1\|886402_887833_-\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143428	cd07110, ALDH_F10_BADH, Arabidopsis betaine aldehyde dehydrogenase 1 and 2, ALDH family 10A8 and 10A9-like. Present in this CD are the Arabidopsis betaine aldehyde dehydrogenase (BADH) 1 (chloroplast) and 2 (mitochondria), also known as, aldehyde dehydrogenase family 10 member A8 and aldehyde dehydrogenase family 10 member A9, respectively, and are putative dehydration- and salt-inducible BADHs (EC 1.2.1.8) that catalyze the oxidation of betaine aldehyde to the compatible solute glycine betaine.	0

>NZ_AP015029.1|WP_059396030.1|880458_881085_+|DNA-3-methyladenine-glycosylase-2-family-protein
MILADLSPEAYCEATRYLAALDPDWSRHIAATGPCLHQATPGREPYEALVRAIAYQQLHARAAEAILGRLLALFPEDAFPTPQQLLTVSPETLRACGFSASKMATVQGIAQARLEGLVPTREEALAMADEALIERLVALRGVGRWTVEMLLIYSLERSDILPVDDFGVREGYRRLKGLDKAPTPAQMRSLGGGWRPFRTVAAWYLWRA
>NZ_AP015029.1|WP_059396029.1|879771_880287_-|sigma-70-family-RNA-polymerase-sigma-factor
MQINDTLKPTEVALLYQAHHSWLRGWLRNRVGCSEHAADLAQDTFVRLLRARQVSPLKEPRAYLSSIARGLMIDQFRRRALEHAYQQSLAHLPEAEVPSEEHRLVILDALGRLDRALHQLKPRVRQAFLLAQLDGLSIVQIAQQLEVSRATVERDLAKALGVCYRLRYADA
>NZ_AP015029.1|WP_059396028.1|878828_879785_-|FecR-domain-containing-protein
MPMHEPAPAQAQVDQAIDWLVKLRFDRPSPRTEQQFQHWLASHPHNPLAWQRVSQLGDELAGLPKDLSRRTLDGSQRQRSSRRDHLKLLGLLAVGASLGWATREPLGLPQLLADSSTATGERRQWQVSDGSHILLNTASAIDLHYSAEQRQLELVRGEVSLDSNPNDTRPFYIDTRIGPLTTLNGQLLLRENNQGLLLAVRRGEVTLFPTSASPRQVHSGETVQVGANGSVHAVALHSDPWGWTDGVLSVQQMPLGEFVAELARYRPGLLRCAPEVANLKVSGTYQLADTAQILQLLTRSLPVRVDYKTRYWVSIGAA
>NZ_AP015029.1|WP_019471008.1|877662_878820_+|MFS-transporter
MNMRLLAGLLFAVSVVGFSLGASLPLVSLRLHEAGASTLEIGIISAIPAAGMMLSAFLVDACCRHLTRRTIYLLSFSLCTVSIALLESAFGSMWLLALLRLGLGLGMGIAIILGESWVNELCPEHNRGKIMALYATSFTGFQVLGPAMLALLGANSPWITGVVTACYGLALLCIVLTVPNDHVEHEEGDKSFGLAGFFRVAPALCVAVLFFSFFDAVVLSLLPVYATSHGFAVGVAALMVTVVFAGDMLFQLPLGWLADRVERTGLHLVCGLVAMSIGIGLPWLLNMTWLLWPLLVVLGAVAGGIYTLALVLIGQRFKGQDLVTANASVGLLWGVGSLIGPLVSGAAMDVAPHGLPMALALMAGLFVCFARQSYRRAGRMRAVAE
>NZ_AP015029.1|WP_172901724.1|877442_877580_+|hypothetical-protein
MRRNPSLPHARQPALQAVRRAWPSDTVLKRRRSVLFAFTFSPHLA
>NZ_AP015029.1|WP_059396027.1|876039_877254_+|MFS-transporter
MATSSASTASTSAAASQATPLVMRIIGFCALAHLINDLIQSVLPAIYPMLKANYDLSFAQIGLITLTFQITASLLQPWVGFFTDRRPAPNLLPMGTLCTLVGIVMLAFVGSFPMILLASALVGIGSSTFHPETSRIARLASGGRFGLAQSTFQVGGNTGSALGPLLAAAIVIPFGQTHVAWFGLAALFFLGVTLMLRGWYKEHLNQAKARKAVQATHGISRNRVIAALIVLGLLVFSKYFYMASFTSYFTFFLIEKFDVSVASSQLHLFLFLGAVAAGTFFGGPIGDRIGRKAVIWFSILGVTPFTLALPYADLFWTTVLSVVIGFILASAFSAIVVYAQELVPGSVGMIAGIFFGLMFGFGGIGAALLGYVADLRGIEYVYGLCSFLPLFGLLAVFLPSTGKR
>NZ_AP015029.1|WP_096425566.1|874921_875848_-|FecR-domain-containing-protein
MPAKQLQQPDPQQEALEWFSLLRQPGCDETQRQAFAAWCQVPENAHAYAELETFWQQLQPPPARPRPRHVTVRRSHLGKWLALVFLVGLGAATYLYWPLLQRLASELHTDVGERRSTRLADGTTLNLDSASAMNIDLRGRTRQLHLVQGQVYLEVVLDGRAMEVDVGNARIQVFGTRLQVARHAGHDEIVVLSGKAMVTQGGEQRMVSAGERVTFNDTRIDPVQKADLKTADSWRNGRLKATDMPLGQVLERLASYQGQRVWMADEQVAHRRVSGDFNLDRPGESLQSLAAAQHLQLQGVLGHWLVVH
>NZ_AP015029.1|WP_016501533.1|874028_874643_+|LysE-family-translocator
MTEIIAVALFTLLAVISPGADFAMVTRSSYAQGRKAGLAAAIGIALGVQVHVLYTVLGIAVIISQSPALFLVMKVLGAGYLIYLGYKSLTNTQRIHLEGGSQPAASVLSALRTGFLTNALNPKTMLFVISAFTQVVQPGSPLALDFAYGAFMSFAHWLWFSLVAVFFSSTALRKAMIDRQVLVDRVIGLALIGLGLAVAVTGIR
>NZ_AP015029.1|WP_016501534.1|872865_873783_-|LysR-family-transcriptional-regulator
MKLPPLNAFRYFDIAAQTESFVRAAEHLHVTHGAVSRQIRLLEESLGVALFERRNRAIFLTSAGRALQGTTQAIFEQLEGAVQRLQQQARDNVLVLSCEPTIAMRWLIPRLPRFHADHPDLQLHLVAAGGPLDFARSGVDLAIRRDDFHWDNQLFNQKICDEWIGPVCHPTSPTQLDGQRLLHSTTRPAAWPTWLRLSGQQARHNERSDYEHFYLTIQAASAGLGLAMASALMVRDELDSGQLQAPFGFVRDGSAYHLLSPQPLGDSGKRQRFAEWVMGECQRCLAHLGLTQNDDPALPSPPQVR
>NZ_AP015029.1|WP_096425565.1|872350_872926_+|DUF882-domain-containing-protein
MKKLLLAAGLLIAGTAYADQRDLWMFAQWAGDHQTRPFREMLVDARLYGVVPIHQLLRSASDWKLCHASPFAVPPVSNWPAVRSTLSLIKVLDGQGILRQFEVVSAYRDPRLNTCAGGAANSAHTRAFAVDILLPAWADPNPLCRFWQQHGQAWSMGLGRYPSGRIHLDTAGYRTWGGDGSAGSSFCVKPK
>NZ_AP015029.1|WP_049278070.1|881315_882368_+|bifunctional-DNA-binding-transcriptional-regulator/O6-methylguanine-DNA-methyltransferase-Ada
MNLYITPDQRWQAVESRDSTATGHFVYAVRTTGVYCHPGCKSRMAKRTNVEFYDTPAAAEAAGYRACKRCISKASTTRHSQLVTRACRLIETIDPAPSLDQLSAQLAVSPFHLHRLFKAETGVTPKAYATAFRARRLREHLEDGQRSVTDAIYDAGFNSNSRFYESADQRLGMRPRQYRAGGAGATIHFALGQCSLGAILVAQSEKGICAILLGDDPEGLLHDLQDQFPKARLIGGDSAYEQLVAEVVGFVEAPALGLALPLDVQGTAFQERVWQALREVPAGSRVSYTDIAERIGAPKAVRAVAMACAANHIAVAIPCHRVVRRDGDISGYRWGVERKQQLLKRETALS
>NZ_AP015029.1|WP_096425567.1|882424_884836_+|mechanosensitive-ion-channel-family-protein
MRRVSLARYCPGLMALLALMVVIASPAWSAPATPLSNLAAAEAPALDENASIEQLSDRLDLIRQGVTSEANDDLLSQLRLAAMQVQRQADALSAQRTADIEKLEDKLKVIGPVQPDEAATLTQQRKALEAEKKALVAQQDQATKLNQSARDLSTQIVNLRRSQFNSQITSRAASPLTPAFWQSIIRPTQDDVARLRDLRGEAADAIGSAFSAENRWLFITSLVAAILVWTLVRRVLERLLASAMVGWLPEGRLRRSALALGVSLATLGTIAGSVSLLRWGLESSAELGSDIASLVNHILTLVVFSAFITGLGRAMLMLQRPSWRLPPMHDEVASALGWFPKVLALALMVMMTMERINSVIGASLALTVAVNGLTALVVAFIFAGALLRYRRTLRKHDLERPTGLVGLIPFVMVVWLTLILLALLTGYLTLAYFLTAKLLWVSLVVTCAYLLTTFFGDLCETLLSPRQPGGLALASTLGLAPRHQAQASTILAGIGRTIVLFLALLLALMPSGTSPSELLMSLGDWDGTGGKLLGNLNIVPQDILLALAIFFGGLFAIRVVKRWLSERLLPETDMDAGMRASLVTLVGYLGFLFLAMLVMSTLRINLTSLTWVVSALSVGIGFGLQQIVQNFISGLILLTERPVKVGDWVSLAGVEGDIRRINVRATEIQMSDRSTVIVPNSQFISQNVRNVTMGNALGVVGITLTLPLETDANRVRELLLAAYHEHEAILDAPATSVSFKDLTASGMVIGVSGYVAGPRQVSGTRSDLLFTILGRLRDEGIPLSSPQSMVLVQEGTRPADESV
>NZ_AP015029.1|WP_059396031.1|884968_886186_-|DUF3422-domain-containing-protein
MHPQRTALHNELHARPSLYFDGPAHVFHLALLGGDAACAALLQRCCPEALDTAAAQGITRLDGHPFKWERHTEFFTLTLVVPCAATDTEWRPLPPVLAEAIAPQAAQVINAVQVLVRDEQGLELPRYGFKDPCGSCVGGGDAVVWSDFRLTEDGTNRFLFINRRLNAYRQGRMIRRLLEIETYRMMASLTLATAKALSQELDTFDKTLVSLSERSTGGDGHDSKGLLDAIAHLSRQVVSHTVKTRHRFGATQAYAQLVFERLGELRESHVGDCQRLGVFIERRFKPTVRYCAATEQRLEQLAKNVANLGDLLQARVQVEMEEQNAEILRSLNARADAQVKIQRAVEGLSIIAITYYLLNLFKLLYGGLNVLGLGLTARDGLLAMAPPVLLVLLVILLRIKQAKQH
>NZ_AP015029.1|WP_059396032.1|886402_887833_-|aldehyde-dehydrogenase-family-protein
MTNSHYIAGRWVEGQGSDCISVNDPALGQPFAEFMAASVAQVDQAVTAARSALPAWKTTSASERAAYLRGFAEQLGQRREALITLQMRNNGKPRHEAEIDLDDAIATFGYYAELAEQLPAKNRDVPLAAPGFTARTRLEPVGVVGLIVPWNFPLVTSAWKLAPALAAGCTVVLKPSEVTPLIEQAYGQIADALGLPAGVLNIVNGKAETGAALSNHNGLDKLSFTGSNSVGSQVMRSASAQCRPVTLELGGKSAIVVFDDCDVDQAVEWIVAGISWNAGQMCSATSRLLVQDGIADALLPRLQAALENLRVGNPLTEEVDMGPLTSQAQWLKVAGYFATAREEGLQCLAGGKALDRDGWFVSPTLYTDVPKHSRLWTEEIFGPVLCARRFASEEQAIAEANDSRFGLVATVCSADLQRAERVADALEVGHVWINSVQAVFVETSWGGTKGSGIGRELGPWGLSAYQSVKHVTRCLG
>NZ_AP015029.1|WP_049274646.1|887846_889346_-|cytosine-permease
MSHSTGIETNGVEQIPDDQRDASPLDLFRLIFGGANTFATAVLGSFPVLFGLSFQAGVWAILLGVGVGALILAPMGLFGALNGTNNAVSSGAHFGVHGRIVGSFLSLLTAVAFFSLSVWSSGDALVGGAKRLAGLPETDLTLGLAYGLFAVLVLVVCIFGFRFMLWVNKIAVWASSLLFLLGIVAFAGPFDASYAGSVNHGQAGFWAAFVGAAILAMSNPVSFGAFLGDWSRYIPRATPKTRIMLAVIAAQGATLIPFLFGLCTATLVATQAPDYIAANNYVGGLLAVAPSWFFLPVCLIAVIGGMSTGTTALYGTGLDMSSVFPRLLSRAGATLLIGVLAIGFIFVGRFTFNLVQSVSTFAVLIITCTSPWMVIMILGLITRRGFYHADDLQVFTRGQRGGHYWFLHGWNWRGMGAWLPSAAVGLCFVNLPGQFVGPLGDLAGGIDLSLPVTLGLAGVLYLVLLNLFPEPAGVYGPRGPRWVRCKSTAHTPVTTAEMA
>NZ_AP015029.1|WP_016501521.1|889439_889829_-|nuclear-transport-factor-2-family-protein
MDQTLQVRQAAANLVAAFASNDTARYFACFSEDATFLFHTLPQPLLSRRAYEDLWAQWQAEGFAVLACESGNAHVSLQGDVAIFMHDVATHIRIAGEEHQLSERETIVFRHQGDQWLACHEHLSVVSPA
>NZ_AP015029.1|WP_016501520.1|891070_891691_+|hydrolase
MAFQYKRLDKNNVAVLLVDHQTGLLSLVRDIDPDRFKNNVLALSDLAKYFKLPTILTTSFETGPNGPLVPELKEQFPDAPYIARPGNINAWDNEDFVKAVKATGKKQLLIAGVVTEVCVAFPALSALEEGFEVFVVTDASGTFNELTRDSAWRRMEAAGAQLMTWFGVACELHRDWRNDIEGLGTLFSNHIPDYRNLMTSYNKLAK
>NZ_AP015029.1|WP_096425568.1|891796_892615_+|polyphosphate-kinase-2
MSKPSRKKPTQEQPEKLGGKAYEKALKHLHVELVKLQEWVVAKGLKVCIVFEGRDGAGKGGTIKAITERVSPRVFRVVALPAPTEREKTQMYLQRYLGHLPAAGEVVIFDRSWYNRAGVERVMGFCSDELVDKFLTGVPVFEKVMVESGIILIKYWLEVSAEEQTLRLQDRINDGRKLWKLSPMDLKSYTRRDDYTQARDDMFAASDTAWAPWFMAHSNDKRRARLNIISHLLSRIPYKDITRDQVVKLPKRGKIGKYKAVAYPFKVVEERF
>NZ_AP015029.1|WP_096425569.1|892651_893848_+|cation:proton-antiporter
MPHDGSLLQATVVFLLAVVLLVPLAQRLRMGAVPGYLLAGMLIGPSVLGLLNNPDNVARLSEMGVVMLLFVIGLELSPQRLWTMRRALFGVGTLQVGLSAVVLGLLAYWLFDQSRPAAIVLGVGLALSSTAFGLQVLAERKDLGKPHGRLAVAILLFQDIAAIPLIAVVPLLGGNVSTADEGAWPLLAVAVGIGVLIIFGRYLLTPVFKWTVGSGLPELSTATALLVVLGTAWLMEHVGVSMALGAFLAGVLMAESPFRHELETQIEPIKGLLLGLFFVGVGMSADLHLLVGMPLAVLGLTLLLVGIKLPLLYGLGRMAGGLNPSQALCLGVVLASGGEFAFVVFKLARDHQVLSPQVHDLLVLAITLSMAVVPLVMMALARRLQDVPPAQAAPETEH
>NZ_AP015029.1|WP_061202954.1|893887_894985_+|AI-2E-family-transporter
MQPGIKLDSALSRGLLDVLIKAGLVAGLVIFAFQVFQPFLELMLWAVILAVTLYPLHCRLQRRTGLKHGYAATLVVLLVLVVLLVPIYLVVMSIGESVDSLVTLLKSGAWSVPTPPESVAAWPLIGPKVYALWLAASENMASVLNQWMPQIKGAGLTVLGAAASAGAAFFLFIGAIIISGVIMAFGDRGEVAAQRIAMRVSGEERGKPLAKLCTATIRAVAQGVIGIAFIQMLLIGVGFVVKGVPGAGMLAIVVLMLGIAQAPATLVTVPVIIYVFNVEGFTVATIIFAIYTFVAGLADNVLKPLLLGRGVDVPMPVVLIGALGGMVVKGIIGLFIGPVILGVTYVLFWQWVALQVPEQPAPPAA

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Crispr_ID: NZ_AP015029_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP015029_2

3780144-3780284

Orphan

Consensus_repeat	Method
CTGTAGGAGCTGGCTTGCCTGCGATGGGCCGCAAAGCGGCCCCATTGGCCATA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP015029_2

>merge|NZ_AP015029|2|3780144-3780284|CRISPRCasFinder
CTGTAGGAGCTGGCTTGCCTGCGATGGGCCGCAAAGCGGCCCCATTGGCCATAACTGACCAACATCAAGCCCTGCCCCACCCCGCCAGCTGTAGGAGCTGGCTTGCCTGCGATGGGCCGCGAAGCGGCCCCATTGGCCATA

>NZ_AP015029|2|2|3780144-3780284|CRISPRCasFinder
CTGTAGGAGCTGGCTTGCCTGCGATGGGCCGCAAAGCGGCCCCATTGGCCATA	ACTGACCAACATCAAGCCCTGCCCCACCCCGCCAG
CTGTAGGAGCTGGCTTGCCTGCGATGGGCCGCGAAGCGGCCCCATTGGCCATA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP015029.1\|WP_096426259.1\|3783805_3784048_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP015029.1\|WP_096426260.1\|3784533_3785088_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_AP015029.1\|WP_096426252.1\|3772053_3773316_+\|gallate-dioxygenase	unknown	unknown	gnl\|CDD\|184006
NZ_AP015029.1\|WP_020190400.1\|3782128_3783388_+\|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NZ_AP015029.1\|WP_016487731.1\|3778931_3780095_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226984
NZ_AP015029.1\|WP_146018908.1\|3774671_3775448_+\|4-oxalmesaconate-hydratase	unknown	unknown	gnl\|CDD\|225031
NZ_AP015029.1\|WP_096426251.1\|3770682_3772032_+\|aromatic-acid/H+-symport-family-MFS-transporter	unknown	unknown	gnl\|CDD\|273327
NZ_AP015029.1\|WP_096426258.1\|3780334_3781051_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP015029.1\|WP_016487733.1\|3781265_3781445_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP015029.1\|WP_096426253.1\|3773359_3774553_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176126
NZ_AP015029.1\|WP_096426256.1\|3777272_3777731_-\|DUF3429-domain-containing-protein	unknown	unknown	gnl\|CDD\|378761
NZ_AP015029.1\|WP_096426263.1\|3788901_3789261_-\|peptidase-S24	unknown	unknown	gnl\|CDD\|224885
NZ_AP015029.1\|WP_016487730.1\|3777766_3778327_-\|GTP-cyclohydrolase-I-FolE	unknown	unknown	gnl\|CDD\|237149
NZ_AP015029.1\|WP_016487738.1\|3787098_3787584_-\|DUF2165-domain-containing-protein	unknown	unknown	gnl\|CDD\|370754
NZ_AP015029.1\|WP_096426261.1\|3785186_3785993_-\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|225724
NZ_AP015029.1\|WP_096426262.1\|3786336_3787053_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212491
NZ_AP015029.1\|WP_096426257.1\|3778311_3778725_-\|DUF393-domain-containing-protein	unknown	unknown	gnl\|CDD\|367833
NZ_AP015029.1\|WP_016487735.1\|3784209_3784473_+\|DUF3077-domain-containing-protein	unknown	unknown	gnl\|CDD\|371447
NZ_AP015029.1\|WP_096426255.1\|3776163_3777249_+\|4-oxalomesaconate-tautomerase	unknown	unknown	gnl\|CDD\|380230
NZ_AP015029.1\|WP_016487727.1\|3775444_3776161_+\|4-carboxy-4-hydroxy-2-oxoadipate-aldolase/oxaloacetate-decarboxylase	unknown	unknown	gnl\|CDD\|181735

Protein	Function_ID	Function_description	E-value
NZ_AP015029.1\|WP_096426252.1\|3772053_3773316_+\|gallate-dioxygenase	gnl\|CDD\|184006	PRK13367, PRK13367, gallate dioxygenase.	0
NZ_AP015029.1\|WP_020190400.1\|3782128_3783388_+\|group-II-intron-reverse-transcriptase/maturase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	1.74299e-174
NZ_AP015029.1\|WP_016487731.1\|3778931_3780095_+\|AAA-family-ATPase	gnl\|CDD\|226984	COG4637, COG4637, Predicted ATPase [General function prediction only].	2.78788e-103
NZ_AP015029.1\|WP_146018908.1\|3774671_3775448_+\|4-oxalmesaconate-hydratase	gnl\|CDD\|225031	COG2120, COG2120, Uncharacterized proteins, LmbE homologs [Function unknown].	1.51256e-46
NZ_AP015029.1\|WP_096426251.1\|3770682_3772032_+\|aromatic-acid/H+-symport-family-MFS-transporter	gnl\|CDD\|273327	TIGR00895, transport_protein, benzoate transport. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	1.51794e-111
NZ_AP015029.1\|WP_096426260.1\|3784533_3785088_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.44133e-15
NZ_AP015029.1\|WP_096426253.1\|3773359_3774553_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176126	cd08435, PBP2_GbpR, The C-terminal substrate binding domain of galactose-binding protein regulator contains the type 2 periplasmic binding fold. Galactose-binding protein regulator (GbpR), a member of the LysR family of bacterial transcriptional regulators, regulates the expression of chromosomal virulence gene chvE. The chvE gene is involved in the uptake of specific sugars, in chemotaxis to these sugars, and in the VirA-VirG two-component signal transduction system. In the presence of an inducing sugar such as L-arabinose, D-fucose, or D-galactose, GbpR activates chvE expression, while in the absence of an inducing sugar, GbpR represses expression. The topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	5.00399e-54
NZ_AP015029.1\|WP_096426256.1\|3777272_3777731_-\|DUF3429-domain-containing-protein	gnl\|CDD\|378761	pfam11911, DUF3429, Protein of unknown function (DUF3429). This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 147 to 245 amino acids in length.	1.10183e-29
NZ_AP015029.1\|WP_096426263.1\|3788901_3789261_-\|peptidase-S24	gnl\|CDD\|224885	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms].	2.87819e-26
NZ_AP015029.1\|WP_016487730.1\|3777766_3778327_-\|GTP-cyclohydrolase-I-FolE	gnl\|CDD\|237149	PRK12606, PRK12606, GTP cyclohydrolase I; Reviewed.	3.9111e-117
NZ_AP015029.1\|WP_016487738.1\|3787098_3787584_-\|DUF2165-domain-containing-protein	gnl\|CDD\|370754	pfam09933, DUF2165, Predicted small integral membrane protein (DUF2165). This domain, found in various hypothetical prokaryotic proteins, has no known function.	2.56358e-28
NZ_AP015029.1\|WP_096426261.1\|3785186_3785993_-\|HNH-endonuclease	gnl\|CDD\|225724	COG3183, COG3183, Predicted restriction endonuclease [Defense mechanisms].	5.89013e-76
NZ_AP015029.1\|WP_096426262.1\|3786336_3787053_-\|SDR-family-oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.07044e-22
NZ_AP015029.1\|WP_096426257.1\|3778311_3778725_-\|DUF393-domain-containing-protein	gnl\|CDD\|367833	pfam04134, DUF393, Protein of unknown function, DUF393. Members of this family have two highly conserved cysteine residues near their N-terminus. The function of these proteins is unknown.	8.53394e-17
NZ_AP015029.1\|WP_016487735.1\|3784209_3784473_+\|DUF3077-domain-containing-protein	gnl\|CDD\|371447	pfam11275, DUF3077, Protein of unknown function (DUF3077). This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.	8.05549e-18
NZ_AP015029.1\|WP_096426255.1\|3776163_3777249_+\|4-oxalomesaconate-tautomerase	gnl\|CDD\|380230	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase.	0
NZ_AP015029.1\|WP_016487727.1\|3775444_3776161_+\|4-carboxy-4-hydroxy-2-oxoadipate-aldolase/oxaloacetate-decarboxylase	gnl\|CDD\|181735	PRK09262, PRK09262, hypothetical protein; Provisional.	4.12416e-146

>NZ_AP015029.1|WP_016487731.1|3778931_3780095_+|AAA-family-ATPase
MLTTLAIGNYRSINHLVLPLGQLNLVTGANGSGKSNLYKALRLLAETAQGGVIEALAREGGLDSTWWAGPETSARMRRGEVPIQGQHPSEARRLRLGFATEHFGFAISLGLPIPLPYPTAFMLDPEIKCEAIWGAGAYRPASLLVERKNALVRAREGRSWAVLDQHADSGESFFNIVGRPRQAPEIGELRAFINSWRFYDHFRIDRDAPCRQPQLGTRSPVLHHDGRNLASALQTIIEIGDVEDLVAALDDAFPGSRLAIDAPPGGLFSVRLHQHGLLRPLGAAELSDGTLRYLLLMAALLTPRPPSLMVLNEPETSLHADLLPALARLIIRASQRSQVWVVSHSKPLIDALTACDGCNVLELEKHHGQTQLRGVGLLDEPLWRWVD
>NZ_AP015029.1|WP_096426257.1|3778311_3778725_-|DUF393-domain-containing-protein
MSCKWPFTLYFDGACPLCAREIAFLRRQSTGAKLILMDISDDDFDPAALGLTVEQLRSCLHGRFASGHWVTGLDATLWSWRAADVGMWVAPLAWRPLRPLFSVLYRLFCRLRPHLAWLPHPAGGHRCSGEESKCHIR
>NZ_AP015029.1|WP_016487730.1|3777766_3778327_-|GTP-cyclohydrolase-I-FolE
MSHSLAEHYHEILVGIGENPQREGLLDTPQRAAKAMQYLCNGYAQNLHEVVNGALFESENDEMIVVRDIELYSLCEHHLLPFIGKAHVAYLPTGRVLGLSKVARVVDMFARRLQIQENLTRQIAYAVQEVTDAAGVAVVIEAKHMCMMMRGVEKQNSVMMTSVMLGEFRDAPSTRHEFLNLIGRHN
>NZ_AP015029.1|WP_096426256.1|3777272_3777731_-|DUF3429-domain-containing-protein
MNTDATALSPSRFAVLGYGGVLPFIGLTLLIFFGAEYRAFFSMMLVGYGAVILSFVGALHWGFAMTLQGLPAKQRQDRLVWSVIPALIGWVGTLLPVPLGCLVLTFGFIGHLWQDHKLAQAVPGWYLPMRVQLTAVASLCLLISGLAVSLHF
>NZ_AP015029.1|WP_096426255.1|3776163_3777249_+|4-oxalomesaconate-tautomerase
MGQTRIPCLLMRGGTSKGAYFLYDDLPAPGPLRDRVLLAVMGSPDARQIDGIGGADSLTSKVAIIRASQRDDADVDYLFAQVVVDEARVDYGQNCGNILAGVGPFALERGLVTASGASTPVRIFMENTGQIAIAQVPTTDGQVEYAGDTHIDGVPGRAAALVVTFADVAGASCGALLPTGNSRDRVDGLEVTCIDNGMPVVLLRAEDLGVTGYEPCETLEADSALKTRLEAIRLHLGPRMNLGDVSQRNVPKMCLLSAPRNGGTVNTRSFIPHRCHASIGVFGAVSVATACLIERSVAQGLARTPGGDRQRLAVEHPSGEFTVEISLEHGVIKGCGLVRTARLLFDGVVCIGTDIWGGPEK
>NZ_AP015029.1|WP_016487727.1|3775444_3776161_+|4-carboxy-4-hydroxy-2-oxoadipate-aldolase/oxaloacetate-decarboxylase
MSGLIGKTGIVVRNIPRVEPHMIDALGRLGVATVHEAQGRKGLLNTAVRPIQQGVTVAGSAVTVLVAPGDNWMFHVAVEQCRPGDVLVVAPSSPCSDGYFGDLLATSLQARGVRGLVIDAGVRDSQTLRDMGFAVWSRAINAQGTVKEVLGSVNLPLLCAGQLVKAGDIVVADDDGVVVVRHGEAQAVLDAATQRADLEERKRQRLAAGELGLDIYEMRPRLAAKGLHYVDHLTDLEG
>NZ_AP015029.1|WP_146018908.1|3774671_3775448_+|4-oxalmesaconate-hydratase
MTSCANPHCRSQQAMNTPQKSALVVSAHSADFVWRAGGAIALHAEQGYAMHVVCLSFGERGESAKLWRKGEMNEAKVKDARREEAMAAAEILGASVEFFDIGDYPMRADKDTLFRLADVYRRVQPEFVLSHSLKDPYNYDHPLAMHLAQEARIIAQAEGYKPGEKIVGAPPVYAFEPHQPEQCEWRPDTFLDITSVWDKKYAAIQCMAGQEHLWEYYTRVALQRGVQAKRNVGIASARNIVYAEGLQSVFPRVTENLA
>NZ_AP015029.1|WP_096426253.1|3773359_3774553_-|LysR-family-transcriptional-regulator
MIDVELPNLMQVRAFIRVAELGSVSRATQVLFRAQSVVTRAIAELEARFAVPLFERHANGMRLTDYGECLLPRAQRVLAELDGVPSLLGTAQGEPLYLFQARRLQVFVKLCETRHMQTVARHFGLSQPAVSAALKVLEGGCGQPLFVRTSRGLQPTVASRDILFPIRRALNELRLLDSDLSAMQGTLRGVVHVGALPLGRSRILPDAILRFTAQHPQVRVVTNESPFDLLATELRVGDVDFVLGALRPYDYASDLVGEPLINEEMVLLARRGHPLLHTHLTLQGVHQARWVLPRAGSPARQLLDNCFAAAGLAAPWPVVESADLAVIRGLLVRSDMLAAVSAHQLAYEIASGELQRLPLALPGTARAIGLIQRSGCLQSPAAVALMACIRQVITEQA
>NZ_AP015029.1|WP_096426252.1|3772053_3773316_+|gallate-dioxygenase
MARIIGDLAVSHTPTIGFAVDHDKQEEAAWAPIFESFEPIRTWLQQRQPDVLFYIFNDHVTSFFFDHYSAFTLGVDEQYGVADEGGNPRDLPPVGGHAALSRHIGQSLMADEFDMSFFRDKPLDHGFFSPMSALLPCDESWPVQIVPLQVGVLQLPIPTARRCYKLGQALRRAIESYPEDLKVAIVATGGVSHQVHGERCGFNNPEWDAQFLDLLVNDPQRLTEMTLAEYATLGGMEGAEVITWLIMRGALSANVERKHQSYYLPSMTGIATLLLENRDQALPAPVNERHRQHMQHQLAGAQQLEGTYPYTLERSAKGYRLNKFLHRMIEPHWRQRFLSEPEALYSEAGLSEEESDLLRRRDWRGLIHYGVIFFVLEKLGAVLGVSNLDIYAAMRGQSIEDFMKTRNQQVRYSVAGKAPN
>NZ_AP015029.1|WP_096426251.1|3770682_3772032_+|aromatic-acid/H+-symport-family-MFS-transporter
MPKPPVDAPIDVKDWIDNRPLAAYQWLLLSLCFLIVLFDGFDVAVMGFIAPSLMQDWGLSRAAFGPVMSAGMVGLAIGALTAGPYADRLGRKKVLLVAVSGFSLLSLACAFARNPYELAVLRLLTGIALGAAMPNCTTLLAEYLPTRNRSLMITIMFTGFNMGSGLGGFLSAWLIPHHGWKSVLLAGGLLPLALLPLLWWLLPESARFLAARQAPASQIAAALAKLGGRFAAGTRFTVSEPTTQHKAPARQLFSERYRFGTLALWLTYFMGLLVIYLTMGWLPTLLRDGGLSIERAATITGLFQIGGAVGAIVVGWIMDRHNPNRAIAIAYALGGLCIVSLGALSLESSLLVVGVAAAGFCMSGAQTGLNAFAPGYYPTEFRATGVSWMLGIGRFGAIFGSLIGGAVLSLGLGLPLLFTLLGLPAFAAALAILANGHARLRATPAVTAP
>NZ_AP015029.1|WP_096426258.1|3780334_3781051_-|hypothetical-protein
MNNLKRTTSLILLLAVASLTACVPWKRERAAYADLCESQFQFKVPGPQGETTLYLETYLYDHAALWGEKPYKQALYVQYPGEKYSRQEFYVQMVAYNKDRQRPSTGSKRGEPPIPVLYDSRQAYITFEDGSRLNARPEVYVGVNETYDFPLVNEKTARPSPYDINSDEVHRMIPKMTNNKRYGSAYVIFQTDKFDADSKWTIHLGALDVQGRKVEIPPLKLCYHPVKKWIGIEPLMRP
>NZ_AP015029.1|WP_016487733.1|3781265_3781445_+|hypothetical-protein
MNKLILPFAIFVSVLLTGKIAEHYGLEGSWKIGLLCLVAAAVQIAVTRFQRYQRHKAQL
>NZ_AP015029.1|WP_020190400.1|3782128_3783388_+|group-II-intron-reverse-transcriptase/maturase
MEQVVEPSNMRRAYKRVLKNRGAPGVDRLTVEELKDWLLVHWPSVKAALLEDRYLPRAVRRVDIPKPNGGVRTLGVPTVVDRLIQQALHQVLQPIFEPTFSDGSYGFRPQRSALDAVVKAKEYVAEGKHWVVDIDLEKFFDRVNHDVLMARLAYRVRDGRVLKLIRRFLEAGMMANGVIQPRSEGTPQGGPLSPLLSNILLTDLDRELERRQLKFCRYADDCNIYIGSEGAGQRAMANIRAFLEGHLKLRINEQKSAVARPWKRKFLGYAITIYRQETRVRPAPESLRRLMDRVRELLRKGRGRSLSHTIEMLNPVLRGWANYFRLTANMRMLEELDWWLRRKLRCLLWRQWKTPKTRERRLILLGLRPERAWKSSVNGRGPWWNSASKHMNQAVPTLYFAKMGLVSLRSTVQGLQRIS
>NZ_AP015029.1|WP_096426259.1|3783805_3784048_+|hypothetical-protein
MLKIVPDPPQNTLCLEDTLIQATDYALCAATVVHQAMLLQPKSPASILMMASMHELETLRALLESALIQVQMPTEPSTLH
>NZ_AP015029.1|WP_016487735.1|3784209_3784473_+|DUF3077-domain-containing-protein
MSTEETTFTVGKTTFYQGENQTHPLFRIEAGIPCQSAREQASELMGYARDMTLDGLMEDKPQLIWASHYLCALAKALMDDAELGMMR
>NZ_AP015029.1|WP_096426260.1|3784533_3785088_-|GNAT-family-N-acetyltransferase
MHNGGGMLFVRPVAASDWRSYRDLRLRALRDSHEAFASTHERESVRADDDWRARVSAVASSSTAQAFFAHWNNEACGLVWCKASDVESSVVEIFQMWVAPDARGLGAGSALLERAITWAEDRGAACVRLGVTIADRPAMHLYKASGFHAAGAPEPLREGSALMSQSMELNLGSRLARKGQGLGR
>NZ_AP015029.1|WP_096426261.1|3785186_3785993_-|HNH-endonuclease
MPVVIVENDTSQWEDQTGAVYHFPKRYQTLLAQGTEVVYYKGRIKDKAFASVRLSANPHYFGKARIGKVYADSSSNKGDLFALIENFTPFESAVPAKIDGAYMETIPGSRASNYWRDGVRLISQSDYDAILSHAKLLDPRLDTALPQSEDDPITFESSNEGSKTSYFGSRYERRKDLRIKAIAIHGLDCKACGFDFEQAYGEYAKGFIHVHHVVPISKCGGEQAVNPETDLVTLCANCHAVVHRKRDMTLSVDELKGMLRGRWVIEPQ
>NZ_AP015029.1|WP_096426262.1|3786336_3787053_-|SDR-family-oxidoreductase
MKMMIVGAGRGLGRALLEGLGKPGDTLIGVSRKQPSDLALAPGIDLHWIDADLAKPTAAVAQIADRTPADLDVLIYNVGIWEEHAFSDHYAFLDDSDESITRLVEVNITATLLLLRRLVPKLLGALRPQLILTGSTSALRQSGRPEVAFGASKFALNGMADALREGFRDDNLAVTVLHLGYLNTDDSLNTPLAQAAARGERRQVPVHDVVTMVDALLRLSGASFVRELILPAIGDERF
>NZ_AP015029.1|WP_016487738.1|3787098_3787584_-|DUF2165-domain-containing-protein
MDTPTSLLIFQITCCIGFSLWLSISLINNLQAFASSAGAIGETMSMAPLAQPPGISLPLLVRAMTPHAIHRLALSIIVLTQAAAVLAAWIGCYELLLGAGLEVARPWLNLASSATLRFLLAMLLGGIWFGYWMRQEVLQLTHLLMMVWILLHSVVLNVRWS
>NZ_AP015029.1|WP_096426263.1|3788901_3789261_-|peptidase-S24
MTATLPIEADDKQVSIDELLHLRAPSVYLVKVDGESMQGAGIYTGDLLVVDRLVEARSGHIIIAAVNGEATCKRMVIRDRQVVLMSENPKYPSRYILEGDRFEVWGVVTHSIRDHDRRQ

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Crispr_ID: NZ_AP015029_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP015029_3

4328709-4328782

Orphan

Consensus_repeat	Method
TTTACGTTTACGTAAAGGTGATGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP015029_3

>merge|NZ_AP015029|3|4328709-4328782|CRISPRCasFinder
TTTACGTTTACGTAAAGGTGATGAGTAGATTGACAGTCACACCAGGCAGGTTTACGTTAACGTAAAGGTGATGA

>NZ_AP015029|3|3|4328709-4328782|CRISPRCasFinder
TTTACGTTTACGTAAAGGTGATGA	GTAGATTGACAGTCACACCAGGCAGG
TTTACGTTAACGTAAAGGTGATGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP015029.1\|WP_096426537.1\|4321084_4324402_-\|maltose-alpha-D-glucosyltransferase	unknown	unknown	gnl\|CDD\|274140
NZ_AP015029.1\|WP_016488167.1\|4326722_4326884_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237940
NZ_AP015029.1\|WP_023047563.1\|4338942_4339797_-\|endonuclease/exonuclease/phosphatase-family-protein	unknown	unknown	gnl\|CDD\|197317
NZ_AP015029.1\|WP_016488160.1\|4314262_4314547_+\|DUF2934-domain-containing-protein	unknown	unknown	gnl\|CDD\|378572
NZ_AP015029.1\|WP_016488174.1\|4335443_4335755_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP015029.1\|WP_016488173.1\|4334659_4335313_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|224885
NZ_AP015029.1\|WP_016488163.1\|4317680_4318757_+\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|377133
NZ_AP015029.1\|WP_016488175.1\|4336190_4336706_+\|DUF4880-domain-containing-protein	unknown	unknown	gnl\|CDD\|379797
NZ_AP015029.1\|WP_016488161.1\|4314700_4316854_+\|glycogen-debranching-protein-GlgX	unknown	unknown	gnl\|CDD\|131155
NZ_AP015029.1\|WP_016488177.1\|4337866_4338883_+\|histone-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|212525
NZ_AP015029.1\|WP_023048823.1\|4324563_4326582_-\|alpha-1,4-glucan--maltose-1-phosphate-maltosyltransferase	unknown	unknown	gnl\|CDD\|200482
NZ_AP015029.1\|WP_070086564.1\|4311473_4314248_+\|malto-oligosyltrehalose-synthase	unknown	unknown	gnl\|CDD\|237740
NZ_AP015029.1\|WP_023048821.1\|4328884_4330048_+\|isovaleryl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173845
NZ_AP015029.1\|WP_095115632.1\|4318873_4321084_-\|1,4-alpha-glucan-branching-protein-GlgB	unknown	unknown	gnl\|CDD\|235445
NZ_AP015029.1\|WP_016488168.1\|4326962_4328645_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|236236
NZ_AP015029.1\|WP_096426538.1\|4330067_4331675_+\|methylcrotonoyl-CoA-carboxylase	unknown	unknown	gnl\|CDD\|178415
NZ_AP015029.1\|WP_016488171.1\|4331678_4332494_+\|gamma-carboxygeranoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|168168
NZ_AP015029.1\|WP_070086565.1\|4309410_4311477_+\|4-alpha-glucanotransferase	unknown	unknown	gnl\|CDD\|237737
NZ_AP015029.1\|WP_016488176.1\|4336725_4337703_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_AP015029.1\|WP_096426539.1\|4332490_4334443_+\|acetyl/propionyl/methylcrotonyl-CoA-carboxylase-subunit-alpha	unknown	unknown	gnl\|CDD\|227111

Protein	Function_ID	Function_description	E-value
NZ_AP015029.1\|WP_096426537.1\|4321084_4324402_-\|maltose-alpha-D-glucosyltransferase	gnl\|CDD\|274140	TIGR02456, Trehalose_synthase, trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (). [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NZ_AP015029.1\|WP_016488167.1\|4326722_4326884_+\|hypothetical-protein	gnl\|CDD\|237940	PRK15313, PRK15313, intestinal colonization autotransporter adhesin MisL.	0.000154274
NZ_AP015029.1\|WP_023047563.1\|4338942_4339797_-\|endonuclease/exonuclease/phosphatase-family-protein	gnl\|CDD\|197317	cd09083, EEP-1, Exonuclease-Endonuclease-Phosphatase domain; uncharacterized family 1. This family of uncharacterized proteins belongs to a superfamily that includes the catalytic domain (exonuclease/endonuclease/phosphatase, EEP, domain) of a diverse set of proteins including the ExoIII family of apurinic/apyrimidinic (AP) endonucleases, inositol polyphosphate 5-phosphatases (INPP5), neutral sphingomyelinases (nSMases), deadenylases (such as the vertebrate circadian-clock regulated nocturnin), bacterial cytolethal distending toxin B (CdtB), deoxyribonuclease 1 (DNase1), the endonuclease domain of the non-LTR retrotransposon LINE-1, and related domains. These diverse enzymes share a common catalytic mechanism of cleaving phosphodiester bonds. Their substrates range from nucleic acids to phospholipids and perhaps, proteins.	6.54509e-101
NZ_AP015029.1\|WP_016488160.1\|4314262_4314547_+\|DUF2934-domain-containing-protein	gnl\|CDD\|378572	pfam11154, DUF2934, Protein of unknown function (DUF2934). This bacterial family of proteins has no known function.	6.82723e-09
NZ_AP015029.1\|WP_016488173.1\|4334659_4335313_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|224885	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms].	4.15319e-21
NZ_AP015029.1\|WP_016488163.1\|4317680_4318757_+\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	gnl\|CDD\|377133	pfam03797, Autotransporter, Autotransporter beta-domain. Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type V pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C-terminus of the proteins it occurs in. The N-terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different protease is used and in some cases no cleavage occurs.	1.46648e-29
NZ_AP015029.1\|WP_016488175.1\|4336190_4336706_+\|DUF4880-domain-containing-protein	gnl\|CDD\|379797	pfam16220, DUF4880, Domain of unknown function (DUF4880). This domain can be found on the N-terminal of uncharacterized proteins from various Rhodopseudomonas and Pseudomonas species, often, but not always followed by the ron siderophore sensor protein family (FecR, PF04773). The function of this domain is unknown.	1.38178e-06
NZ_AP015029.1\|WP_016488161.1\|4314700_4316854_+\|glycogen-debranching-protein-GlgX	gnl\|CDD\|131155	TIGR02100, Glycogen_operon_protein_GlgX_homolog, glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NZ_AP015029.1\|WP_016488177.1\|4337866_4338883_+\|histone-deacetylase-family-protein	gnl\|CDD\|212525	cd10001, HDAC_classII_APAH, Histone deacetylase class IIa. This subfamily includes bacterial acetylpolyamine amidohydrolase (APAH) as well as other Class II histone deacetylase (HDAC) and related proteins. Deacetylases of class II are Zn-dependent enzymes that catalyze hydrolysis of N(6)-acetyl-lysine residues of histones (EC 3.5.1.98) and possibly other proteins to yield deacetylated histones/other proteins. Mycoplana ramosa APAH exhibits broad substrate specificity and catalyzes the deacetylation of polyamines such as putrescine, spermidine, and spermine by cleavage of a non-peptide amide bond.	3.41831e-144
NZ_AP015029.1\|WP_023048823.1\|4324563_4326582_-\|alpha-1,4-glucan--maltose-1-phosphate-maltosyltransferase	gnl\|CDD\|200482	cd11344, AmyAc_GlgE_like, Alpha amylase catalytic domain found in GlgE-like proteins. GlgE is a (1,4)-a-D-glucan:phosphate a-D-maltosyltransferase, involved in a-glucan biosynthesis in bacteria. It is also an anti-tuberculosis drug target. GlgE isoform I from Streptomyces coelicolor has the same catalytic and very similar kinetic properties to GlgE from Mycobacterium tuberculosis. GlgE from Streptomyces coelicolor forms a homodimer with each subunit comprising five domains (A, B, C, N, and S) and 2 inserts. Domain A is a catalytic alpha-amylase-type domain that along with domain N, which has a beta-sandwich fold and forms the core of the dimer interface, binds cyclodextrins. Domain A, B, and the 2 inserts define a well conserved donor pocket that binds maltose. Cyclodextrins competitively inhibit the binding of maltooligosaccharides to the S. coelicolor enzyme, indicating that the hydrophobic patch overlaps with the acceptor binding site. This is not the case in M. tuberculosis GlgE because cyclodextrins do not inhibit this enzyme, despite acceptor length specificity being conserved. Domain C is hypothesized to help stabilize domain A and could be involved in substrate binding. Domain S is a helix bundle that is inserted within the N domain and it plays a role in the dimer interface and interacts directly with domain B. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NZ_AP015029.1\|WP_070086564.1\|4311473_4314248_+\|malto-oligosyltrehalose-synthase	gnl\|CDD\|237740	PRK14511, PRK14511, malto-oligosyltrehalose synthase.	0
NZ_AP015029.1\|WP_023048821.1\|4328884_4330048_+\|isovaleryl-CoA-dehydrogenase	gnl\|CDD\|173845	cd01156, IVD, Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.	0
NZ_AP015029.1\|WP_095115632.1\|4318873_4321084_-\|1,4-alpha-glucan-branching-protein-GlgB	gnl\|CDD\|235445	PRK05402, PRK05402, 1,4-alpha-glucan branching protein GlgB.	0
NZ_AP015029.1\|WP_016488168.1\|4326962_4328645_-\|AMP-binding-protein	gnl\|CDD\|236236	PRK08315, PRK08315, AMP-binding domain protein; Validated.	0
NZ_AP015029.1\|WP_096426538.1\|4330067_4331675_+\|methylcrotonoyl-CoA-carboxylase	gnl\|CDD\|178415	PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain.	0
NZ_AP015029.1\|WP_016488171.1\|4331678_4332494_+\|gamma-carboxygeranoyl-CoA-hydratase	gnl\|CDD\|168168	PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated.	0
NZ_AP015029.1\|WP_070086565.1\|4309410_4311477_+\|4-alpha-glucanotransferase	gnl\|CDD\|237737	PRK14507, PRK14507, malto-oligosyltrehalose synthase.	4.71574e-160
NZ_AP015029.1\|WP_016488176.1\|4336725_4337703_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	5.40376e-41
NZ_AP015029.1\|WP_096426539.1\|4332490_4334443_+\|acetyl/propionyl/methylcrotonyl-CoA-carboxylase-subunit-alpha	gnl\|CDD\|227111	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism].	0

>NZ_AP015029.1|WP_016488168.1|4326962_4328645_-|AMP-binding-protein
MSQPSYTRGRQDQPLLTQTIGQAFDATVARCADGEALVSRHQGLRYSWRQLAEQVEVHARALMALGVNTGDRVGIWSPNCAQWCILQLASAKVGAILVNINPAYRVGELDYVLRQSGCRWLVCADAFKASDYHAMVQELVPELASTTPGELASPRLPELRGVISLAANPPAGFLPWHALAERAGQTSTDACTARQQSLQFDQPVNIQYTSGTTGAPKGATLSHYNILNNGFMVGESLGLTACDRMVIPVPLYHCFGMVMANLGCITHGSTMIYPNDAFDAELTLRAVAEERASILYGVPTMFIAMLDHPSRAQMDLSSLRSGIMAGATCPIEVMRRVIDQMHMAEVQIAYGMTETSPVSLQTGPDDDLELRVTTVGRTQPQLENKLVAADGCIVARGEIGELCTRGYSVMLGYWDNPQATADAIDPAGWMHSGDLAVMDEHGYVRIVGRNKDMIIRGGENIYPRELEEFFYTHPAVADAQVIGIPCSRYGEEIVAWIKLHPGHHATVEELQGWCKGRIAHFKVPRHIRFVDEYPMTVTGKVQKFRMREISVAEISALSAG
>NZ_AP015029.1|WP_016488167.1|4326722_4326884_+|hypothetical-protein
MNIPIPPETPDPNIDDPSLPPPVPEKEPDELPIKPTMPPTVGDPPSQEPPVKA
>NZ_AP015029.1|WP_023048823.1|4324563_4326582_-|alpha-1,4-glucan--maltose-1-phosphate-maltosyltransferase
MSRNEPFESVPMANDHPEQAISLSQALLAPRVVIEDTQPVLDAGTFAAKAISGQAVAVSTKVYSDGHDRLAVMLNWRQANSRRWHCVPMHSPGNDLWLAEFTPTELGPHLFSIEAWVDPFATYSHDLEKKYNAGVEVQLELEEGRLMLGKGIELCSGAVREELEAVQQRLAELDSDGQVALFLGPDVAHLMSEAGHRSYLARSCEFPIDVDRPAAQFASWYELFPRSITDDPQRHGTFNDVHQRLPMIRDMGFDVLYFPPIHPIGMQHRKGRNNALKAEPGDPGSPYAIGSAEGGHDAIHPQLGTREDFRRLVAAAAEHGLEIALDFAIQCSQDHPWLKEHPGWFSWRPDGTIRYAENPPKKYQDIVNVDFYAPDAVPSLWLALRDVVVGWVEEGVKTFRVDNPHTKPLPFWQWLIANVRSQHPDVIFLAEAFTRPAMMARLGKVGYAQSYTYFTWRNHKQELREYFEQLNQPPWSQCYRPNFFVNTPDINPFFLHTSGRAGFLIRAALATMGSGLWGMYSGFELCESAPLPGKEEYLDSEKYQIRPRDFTQPGNIIAEIAQLNRIRRQNRALQTHLGVAFFNCWNDNILYFAKRTPERDNYILVAICLDPHNAQEAHFELPLWELGLDDDADTQGEDLMNGHRWTWHGKTQWMRIEPWHQPFGIWRIEKAR
>NZ_AP015029.1|WP_096426537.1|4321084_4324402_-|maltose-alpha-D-glucosyltransferase
MAKRSRPAAFIDDPLWYKDAVIYQLHIKSFFDSNNDGIGDFAGLISKLDYIAELGVNTLWLLPFYPSPRRDDGYDIAEYKAVHPDYGSMADARRFISEAHKRGLRVITELVINHTSDQHPWFQRARHAKRGSKTRDFYVWSDDDQKYDGTRIIFLDTEKSNWTWDPVAGQYFWHRFYSHQPDLNFDNPLVLKAVIGVMRFWLDLGVDGLRLDAIPYLIERDGTNNENLAETHAVLKAIRAEIDANYPDRMLLAEANQWPEDTRPYFGEGDGDECHMAFHFPLMPRMYMALAMEDRFPITDILRQTPEIPANCQWAIFLRNHDELTLEMVTDRERDYLWNYYAEDRRARINLGIRRRLAPLLQRDRRRIELLTSLLLSMPGTPTLYYGDELGMGDNIYLGDRDGVRTPMQWSPDRNGGFSRADPQRLVLPPIMDPLYGYQTVNVEAQSHDPHSLLNWTRRMLAVRKQQKAFGRGSLRTLTPSNRRILAYIREYTDADGNTEVILCVANVSRAAQAAELELSQYADKVPVEMLGGSAFPPIGQLPFLLTLPPYAFYWFLLASHDRMPSWHIQATEGLPELTTLVLRKRMEELLEAPARETLQTTILPQYLPKRRWFAGKEGPIDQVRLCYGVRFATATTPVLLSEIEVLGGGTANHYQLPFGLLPEDQINTALPQQLALSRVRRAHQVGLITDAFVLEPFIRAVLHACQNGLRLPCGSGAGELRFECTDLLAALGLNDESAVRYLSAEQSNSSVVIGDSVVLKLIRRVNPGIHPELEMSAYLTAAGFANISPLLAWVSRVDEQNAPHLLMIAQGYLSNQGDAWAWTQNTLERAIRDQMAPAGGDAEVHTDALEELTGFAALFGQRLGEMHLLLAAPTDDEAFRPRPSDADDSQRWGAQISAELTHALELLAQHRDALDSDSQALIDDLQQQRDGLAQHIASLADQAEGGLLMRVHGDLHLGQVLVVQGDAYLIDFEGEPSRPLQERRAKHSPYKDVSGVLRSFDYAAAMILRSASAVDLSGPAQQARQRVARQYLHQSRHAFVEAYGLATAAMPHAWKMADGERAALELFCLEKAAYEITYEAENRPTWLAVPLHGLHGLISTWGES
>NZ_AP015029.1|WP_095115632.1|4318873_4321084_-|1,4-alpha-glucan-branching-protein-GlgB
MNATTRENGGLRQRDLDALARAEHADPFAVLGPHGDGKGGVFIRAFLPNALNARVLARDDGRVLAEMVQGAVPGLFTAHLDDAQAYLLHIGWAGGEQITEDPYSFGPQLGDMDLHLFAEGNHRDLSGRFGAQPIQVDGIDGVCFSVWAPNARRVSVVGDFNNWDGRRHPMRLRHGAGVWELFVPRLGVGETYKFEVLGKDGILPLKADPLARATELPPSTASKVAGELSHAWQDHDWMAQRAQRHGYNAPLSIYELHPGSWRCELDEAGEVGRYYNWRELAERLVPYVQELGFTHIELLPIMEHPFGGSWGYQPLSMFAPTSRYGSAEDFAAFIDACHQGGIGVLLDWVPAHFPTDEHGLARFDGTALYEYDNPLEGYHQDWNTLIYNLGRNEVRGFMMASALHWLKHFHIDGLRVDAVASMLYRDYSRKAGEWVPNRYGGRENLEAIDFIRHLNGVAAVEAPGALIIAEESTAWPGVSQPTQQGGLGFAYKWNMGWMHDTLHYIQNDPVHRAHHHNEMSFGLIYAYSEHFILPISHDEVVHGKHSLIDKMPGDRWQKFANLRAYLTFMWAHPGKKLLFMGCEFGQWREWDHDSELDWYLLQYPEHQGVQRLVGDLNRLYREVPALHEQDCQPQGFQWLIGDDAQNSVYAWLRWSSSGEPVLVVANFTPVPREGYRIGVPFGERWQELLNSDAELYAGSNVGNLGAVASEAVASHGQPLSLALNLPPLGVLIMKPA
>NZ_AP015029.1|WP_016488163.1|4317680_4318757_+|autotransporter-outer-membrane-beta-barrel-domain-containing-protein
MKSTSNPVRFDSIFYAVSTSLLLATPVETFAYELQGDPTSPGFLQQPAMPQLSLDPASASGLSIGTLNAFSQTMSARHGQAAPDMIASQWAQFFPTNARMGTQPPDQLEAPSQQLVIGPDLFVRETAAGNVHRAGVFVGHNNLQSSFNGIRPLLGDKQRNAVNLSGESLGVYWSMTHEQGWHLDAVAMGSRIDVLGRGENGQRLDESGHAMTFSVEGGYPIRLSGNWVIEPQAQLINQQFFPGNQVQEETLQAFDSQPSWSGRVGAKLSGRYEVRGMPIEPYVRTNVWYDFSNADEVKLDQVDKISSSRYSTTVELGLGLVARVTPSVALFVSADYSSDVDDNDLNGLIGSLGVRMRW
>NZ_AP015029.1|WP_016488161.1|4314700_4316854_+|glycogen-debranching-protein-GlgX
MSPRTPKKTRSVAPSRIREGMPFPLGATWDGLGVNFALFSANATKVELCLFDSTGEQELERIELPEYTDEIYHGYLPDAHPGLVYGYRVYGPYEPENGHRFNPNKLLIDPYAKQLVGSLEWSEALFGYTIGHPDGDLSFDERDSAPFVPKCKVIDPAFTWGRDQRVSVPWERTIIYEAHTRGISMRHPAVPEELRGTFAGLANDELLKHIKDLGVSSIELLPIHAFVNDQHLLDKGLNNYWGYNSIAFFAPHPRYLASGKIAEFKEMVAHLHDAGLEVILDVVYNHTAEGNERGPTLSMRGIDNASYYRLMPDDKRYYINDSGTGNTLDLSHPCVLQLVTDSLRYWAGEMHVDGFRFDLATILGRYHDGYSERHGFLVACRQDPMLSQVKLIAEPWDCGPGGYQVGNFAPGWAEWNDRFRDTARAFWKGDEGQLADFAARLTASGDMFNNRGRRPYSSVNFITAHDGFTLRDLVSYNHKHNEDNDENNQDGTDNNLSWNCGAEGPTDDPDINALRMRQMRNYFATLLLAQGTPMIVAGDEFSRTQHGNNNAYCQDSEIGWVNWDLDQEGKELLAFVKRLTRLRLAYPVLRRSRFLVGDYNEAIGVKDVTWLAPDGNEMSVAQWEDPHGRCLGMLIDGRAQVSGIARPGSEATVLLIVNAHHDVVPFKLPAVPEGDYWSCLIDTDRPELRKGQHLQFDSTFEVKGRSMLLMVLQHEEE
>NZ_AP015029.1|WP_016488160.1|4314262_4314547_+|DUF2934-domain-containing-protein
MMSVDEKRIREFAYQIWESEGKPVGEEERHWDMARKLAEAEALAPKAQPRKRAPAKPKAATEPKAPAEPKAAALPGVKPAAAKKPRAVKKPTAG
>NZ_AP015029.1|WP_070086564.1|4311473_4314248_+|malto-oligosyltrehalose-synthase
MKPLTATLRLQFHSDFTLDHAVPLVPYFAQLGISHLYASPILKARAGSRHGYDVVDPTCVNPELGGEAALERLVAALRQHGMGLILDTVSNHMAVGGADNPWWQSLLAWGRRSPYAEFFDIQWHSSDPLLAGQLLLPFLGSDYGVALKNGEIPLQFDQQQGLLHVVHYEHSFPICPVDYGWILALSPEPALKALAEHFTALNESPTPLAAALPLQTELARLVREGADLESALVAFDSRSEAGFKRLHLLLERQTYRLASWRTAADDINWRRFFDINELGGLRVERAVVFEATHAKLFELIERGLVDGLRIDHIDGLADPRGYCRKLRRRVDSLLAQRPLQAALEHFPIYVEKILGAGEHLHRDWLTDGTTGYEFMNQVSLLQHDPAGETPLTELWANVTERPDFPEEVRQARYLVLNASLAGDCESVAQALLQVARNDLMTRDLTLGGIRRALQAVVAHYPVYRTYFNACGRPAEDEGFFQQALANARHDLGEADWPLLDHLEQWLGGQAWKRLPPGRARKQLRHACVRFQQLTAPSAAKAVEDTAFYRSARLLSRNDVGFEAEHFSAPPMHFHNEAQRRLRDFPDNLLATATHDHKRGEDTRARLAVLSERAPWLASRVEHWRELAEPLRAQLNDGLAPSPGDELMLLQTLLGSWPLELDLHDETALHQYAERIRQWQQKALREAKLRSSWSAPNEAYESACARYIDSLLLGSEHQQLRKSVADAAQLLACPGALNGLVQALLRMTTPGVPDLYQGNEYWDFSLVDPDNRRPVDYASRRRTLDDATPLAELLAHWRDGRIKQALIARVLDCRQAHAELFRRGAYLPLTVQGRHADKVIAFARVGEGEHAVVVAPRLASGLLGGAATPLIPAQNWDDTRVVLPFALSPANSTGLFRGAAVSSSKELMLSTVLAEFPVNVLIQQS
>NZ_AP015029.1|WP_070086565.1|4309410_4311477_+|4-alpha-glucanotransferase
MSETALHRLANRVGLSRDWIDANARPQRVSDEVLCKLLAGLGHPASDDTAIAASLRAVEAAEDSEHLPPLLTADQGQPLALSRYFSAASVARCTLEDQTSVTLSLDEQARLPGDLPIGYHQVEIDSRRFTVAVAPPRCYSLADNVQPPPRCWGLAVQLYSLRRPGDGGYGDCLALEQLARLAAERGADALAISPIHALSAIDQEHYSPYSPSSRLLLNTLYASPAALLGEREVRMAIEACGLEQQLEELEQRPLVDWPRAASARLRLLEALYHGFSHGDHPLRRDFDSFREAGGQALEHHCRFEVLQAQAVEHGLGADWRNWPKAWHDPYHPEVAAFANAYPAKVEFHAFCQWLTERGLQRAQEAARGNGMAVGLIADLAVGADGAGSQAWSRQDELLAGLTVGAPPDILNRAGQDWGICAFSPEGLKRNGYRAFIEMLRANLAHAGGLRIDHVMGLRRLWLIPQGAKPSEGAYLNYPLDDLLRLLALESVRHQAVILGEDLGTVPDGLRETLAEKAVLGMRVLPFEQTQPGQFKPILDWPDSALATTGTHDLAPLAGWLENRDIDWSHRLQLIDAATELHWRQDRQKEHDGLRRTLEANYGELKDNDAVIDAAIRFVGHTRAPLVLVPLEDLLGCEEQPNLPGTTAGHPNWRRRFTQPVAELLDDEDAARRLELLAQAREQAWERDR
>NZ_AP015029.1|WP_023048821.1|4328884_4330048_+|isovaleryl-CoA-dehydrogenase
MHYPSLNFALGETIDMLRDQVRTFVAAELAPRAAQIDHDNLFPADMWRKFGDMGLLGITVSEEYGGAGLGYLAHVVSMEEISRASASVALSYGAHSNLCVNQINRNGTHEQKLKYLPKLISGEHIGALAMSEPNAGSDVVSMKLRAEKRGDHYVLNGSKTWITNGPDANTYVIYAKTDLDKGAHGITAFIVERDWKGFSRSNKFDKLGMRGSNTCELFFDDVQVPAENILGQLNGGVRVLMSGLDYERVVLSGGPTGIMQSCMDLVVPYIHDRKQFGQSIGEFQLIQGKIADMYTQLNASRAYLYAVAQACDRGETTRKDAAGVILYTAERATQMALEAIQILGGNGYINEFPAGRLLRDAKLYEIGAGTSEIRRMLIGRELFNETR
>NZ_AP015029.1|WP_096426538.1|4330067_4331675_+|methylcrotonoyl-CoA-carboxylase
MATLHTQINPRSAEFAGNSAAMLEQVQALRGLLAQVAQGGGPKAQERHTSRGKLLPRERIDRLLDPGSPFLEIGQLAAHEVYGEDVPAAGVIAGIGRVEGVECMIVANDATVKGGSYYPLTVKKHLRAQTIAQQNRLPCIYLVDSGGANLPRQDEVFPDREHFGRIFFNQATMSAQGIPQIAVVMGSCTAGGAYVPAMADEAIMVRQQATIFLAGPPLVKAATGEVVSAEDLGGADVHCRISGVADHYADNDEHALAIARRSVANLNWHKLGKLQRLAPVAPLYAADELYGVVPADAKQPFDVREVIARLVDGSVFDEFKALFGTTLVCGFAHLQGYPVAILANNGILFAEAAQKGAHFIELACQRGIPLLFLQNITGFMVGKKYEEGGIAKHGAKLVTAVACAQVPKFTVIIGGSFGAGNYGMCGRAYDPRFLWMWPNARIGVMGAEQAAGVLAQVKREQSERSGQPFSAEDEARLKQPILDQYEHQGHPYYSSARLWDDGVIDPAQTRDVLGLALSAALNAPIEQSRFGIFRM
>NZ_AP015029.1|WP_016488171.1|4331678_4332494_+|gamma-carboxygeranoyl-CoA-hydratase
MSDFSTLEVTRDPRGFATLWLSREDKNNAFNAQMIRELIVAIDRLAEDASLRFVLLRGRGRHFSAGADLAWMQQSAQLDFNTNLDDAHELGELMYALHRLKAPTLAVVQGAAFGGALGLISCCDMAIGAEDAQLCLSEVRIGLAPAVISPFVVKAIGERAARRYALTAERFSGVRARELGLLAEVYPASELDAQVEAWVNNLLQNSPQALRATKDLLREVDDGELSPALRRYCENTIARIRVSAEGQEGLRAFLEKRRPAWQTDDKKEPRP
>NZ_AP015029.1|WP_096426539.1|4332490_4334443_+|acetyl/propionyl/methylcrotonyl-CoA-carboxylase-subunit-alpha
MSRPALTTLLVANRGEIACRIMRTAKAMGLTTVAVHSATDRDARHSREADIRVDLGGTKAAESYLLVDKLLAAAKASGAQAIHPGYGFLSENAGFARAIEQAGLIFLGPPASAIDAMGSKSAAKALMEAAGVPLVPGYHGEAQDLDTFRAAAERIGYPVLLKASAGGGGKGMKVVEEESQLADALASAQREAQSSFGDARMLVEKYVLKPRHVEIQVFADQHGNCLYLNERDCSIQRRHQKVVEEAPAPGLSPELRRAMGEAAVRAAQAIGYVGAGTVEFLLDARGEFFFMEMNTRLQVEHPVTEAITGLDLVAWQIRVACGEPLPITQEQVPLIGHAIEVRLYAEDPANEFLPATGKLALYRESAPGEGRRVDSGVSEGDVVSPFYDPMLGKLIAWGENREQARLRLLAMLDEFAIGGLKTNIAFLRRILAHPAFAATELDTGFIPRHQDVLLPAPGALPAGFWEAAAEAWLQSQPGHQRDDDRSSPWGAHNGLRLGLPARSSLHLVSGGQDQAVALERSAASTWQLVGEQLVHDEAGVRRQHLAIRRDGTLYLHWDGEMHAIQAFDPIAEAEASHGHQGGLGAPMNGSIVRVLVEPGQVVEAGTALVVLEAMKMEHSIRAPHGGTVKALFCHEGDMVSEGTVLVELAE
>NZ_AP015029.1|WP_016488173.1|4334659_4335313_-|helix-turn-helix-domain-containing-protein
MENWNAFLKRYKREHNLSQLKLAERLGMTQGGVGHWLRGTRRPTLETINEKLEKLGLVFLEAQVMVVERDILREAPGRYAVEPPVSAQALLYASFRFPVLTWADLQGPLPEAGKCHEQTDYMPAGNAFWLVVENDSMNAASGKSVPEGMRVLVDTGLQAEPGRLVIARQPGRPAVLRQLVEEGGDKMLKPLNTRYPTILCEEGCEFLGVVVRVHGAF
>NZ_AP015029.1|WP_016488174.1|4335443_4335755_+|hypothetical-protein
MKPPKNDETDLDSEAARRALDYYLNPKPQRPTLDNKIWTLHESVTSDQAQEHAIALLRCAAATAQETASHQHGSQRELTYALMHMMDMARALLEHNRAADPEF
>NZ_AP015029.1|WP_016488175.1|4336190_4336706_+|DUF4880-domain-containing-protein
MTRLLLPLEHPTPVTEHDPDRALLHALKRLPRRVQQVFLLNRLDQLDFASIAARLDLPLASIEQNMDQALQAGRSRRDVLSSVAGQWYVRLQSPQVTACERIDFRRWLDADTANLQAFHETELRWRSLLAPARQLGHDGWYRQGRAALSLGGCSIAVGLGVAALVVFGLWA
>NZ_AP015029.1|WP_016488176.1|4336725_4337703_-|LysR-family-transcriptional-regulator
MMPTTTPFTRDPEAKRFLNDRLDWNLLRTFLVIGQEGSISRAAARLHLSQPAVSQALRRLEEQLGSALVVRRGPRINLSQAGEEVMQIAAELYGTVSRLGPALDRPAETVTGKIRLLSISRIQSRVYDEFLAQFHSDYPQVEVEIDVLRSSDVASGLLQKTASFGLSLCRTPQPRLEQRVLLEQRYAFFCGKRHRLFGRKNLTLADLQGENFVSFTSDQMGGNLSPLTVFRDQQGFTGRIVASSPSLDEILRLVGAGYGIGCLPEHIVAADVQANELWRLPPWDGVIDVNVYLLWNREQKFTQAESIFLERFQQMLMTTDPAERF
>NZ_AP015029.1|WP_016488177.1|4337866_4338883_+|histone-deacetylase-family-protein
MKAFFHPAQRLHHPRSYLSRGQMRQPQEVPARIEPLLAVVNKLGYPLFEPADHGLAPLAAVHGQAYLDYLGSAYQQWHEVPEDWGDEVMSNIYIREGNPLRGILGKTARYLADGSCPIGEHTWQAAYWSAQSAVAAAHAVIEGDQAAYALCRPPGHHARAEAAGGFCYLNNAAIAAQVLRGKFDKVAMLDTDMHHGQGIQEIFYERNDVLYVSIHGDPTNFYPVVAGFDDETGAGAGAGFNLNLPMAHGASEADFLACMDQAATALHAFAPDVLVLSLGFDIYENDPQSKVHVSHEGFYLLGQRIKALGLPCVVIQEGGYDIATLDENASRFFAGMAA
>NZ_AP015029.1|WP_023047563.1|4338942_4339797_-|endonuclease/exonuclease/phosphatase-family-protein
MRVSIYQPILLALLILVLPGNVWAGLPESLKVMSFNVRTPVDAAPGKRWEDRRAAMVTMILDVQPAVIGTQELVQEQADYLAAHLPGYRWFGEGRRGGDGDEHMGVFYDSTQMTAEQWGDFWLSDTPDVAGSVSWGNLFPRMVSWALFRRIEDGRRFYFLNTHLPYRAEDETARVKGAELIAARVDKLPIGVPVVLTGDFNAEPGSSAYLALSRVLQDTRPVVKTPRGPSNTFHGFTGKATVRVDWVLERGFHARSFVTDDRLINGVLPSDHFPVVVELEWTSP

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Crispr_ID: NZ_AP015029_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP015029_4

5376662-5376757

Orphan

Consensus_repeat	Method
TCCAGCGTGCCGCCATCAACCTGC	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_AP015029_4

>merge|NZ_AP015029|4|5376662-5376757|CRISPRCasFinder
TCCAGCGTGCCGCCATCAACCTGCGCGGCCTTCAGCGCGGCAACCTGCTCGTTCAGGCCCTTCAACTGGGCATCCAGCTTGCCGCCATCAACCTGC

>NZ_AP015029|4|4|5376662-5376757|CRISPRCasFinder
TCCAGCGTGCCGCCATCAACCTGC	GCGGCCTTCAGCGCGGCAACCTGCTCGTTCAGGCCCTTCAACTGGGCA
TCCAGCTTGCCGCCATCAACCTGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP015029.1\|WP_016488919.1\|5380200_5380797_+\|superoxide-dismutase-[Fe]	unknown	unknown	gnl\|CDD\|182534
NZ_AP015029.1\|WP_096426717.1\|5385236_5385623_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP015029.1\|WP_016488917.1\|5378410_5379301_-\|LysR-family-transcriptional-regulator-ArgP	unknown	unknown	gnl\|CDD\|235144
NZ_AP015029.1\|WP_060517495.1\|5377365_5378361_-\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223528
NZ_AP015029.1\|WP_016488913.1\|5374575_5374878_+\|helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|223713
NZ_AP015029.1\|WP_016488920.1\|5381047_5383102_+\|GGDEF-and-EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_AP015029.1\|WP_016488921.1\|5383260_5384598_+\|peptidase	unknown	unknown	gnl\|CDD\|226018
NZ_AP015029.1\|WP_024717456.1\|5384740_5385223_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP015029.1\|WP_016488910.1\|5372225_5372981_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|225717
NZ_AP015029.1\|WP_016488906.1\|5369101_5369683_-\|YceI-family-protein	unknown	unknown	gnl\|CDD\|214870
NZ_AP015029.1\|WP_096426719.1\|5387181_5388246_+\|imelysin	unknown	unknown	gnl\|CDD\|226020
NZ_AP015029.1\|WP_095116027.1\|5371178_5372066_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|367175
NZ_AP015029.1\|WP_096426716.1\|5379404_5380004_+\|amino-acid-transporter	unknown	unknown	gnl\|CDD\|224198
NZ_AP015029.1\|WP_095116029.1\|5373837_5374425_-\|DUF479-domain-containing-protein	unknown	unknown	gnl\|CDD\|225666
NZ_AP015029.1\|WP_016488911.1\|5372980_5373769_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NZ_AP015029.1\|WP_096426718.1\|5385733_5387161_+\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|226019
NZ_AP015029.1\|WP_016488907.1\|5369727_5370024_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP015029.1\|WP_060517497.1\|5374895_5375945_+\|alkene-reductase	unknown	unknown	gnl\|CDD\|239243
NZ_AP015029.1\|WP_016488905.1\|5367942_5369100_-\|phosphatidylserine/phosphatidylglycerophosphate/-cardiolipin-synthase-family-protein	unknown	unknown	gnl\|CDD\|224419
NZ_AP015029.1\|WP_096426715.1\|5370020_5371103_-\|serine-hydrolase	unknown	unknown	gnl\|CDD\|224594

Protein	Function_ID	Function_description	E-value
NZ_AP015029.1\|WP_016488919.1\|5380200_5380797_+\|superoxide-dismutase-[Fe]	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	1.46231e-112
NZ_AP015029.1\|WP_016488917.1\|5378410_5379301_-\|LysR-family-transcriptional-regulator-ArgP	gnl\|CDD\|235144	PRK03635, PRK03635, ArgP/LysG family DNA-binding transcriptional regulator.	3.47379e-158
NZ_AP015029.1\|WP_060517495.1\|5377365_5378361_-\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|223528	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	1.16546e-54
NZ_AP015029.1\|WP_016488913.1\|5374575_5374878_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|223713	COG0640, ArsR, Predicted transcriptional regulators [Transcription].	2.69982e-17
NZ_AP015029.1\|WP_016488920.1\|5381047_5383102_+\|GGDEF-and-EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	8.92266e-114
NZ_AP015029.1\|WP_016488921.1\|5383260_5384598_+\|peptidase	gnl\|CDD\|226018	COG3487, IrpA, Uncharacterized iron-regulated protein [Inorganic ion transport and metabolism].	0
NZ_AP015029.1\|WP_016488910.1\|5372225_5372981_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|225717	COG3176, COG3176, Putative hemolysin [General function prediction only].	5.82362e-64
NZ_AP015029.1\|WP_016488906.1\|5369101_5369683_-\|YceI-family-protein	gnl\|CDD\|214870	smart00867, YceI, YceI-like domain. E. coli YceI is a base-induced periplasmic protein. The recent structure of a member of this family shows that it binds to polyisoprenoid. The structure consists of an extended, eight-stranded, antiparallel beta-barrel that resembles the lipocalin fold.	1.84597e-21
NZ_AP015029.1\|WP_096426719.1\|5387181_5388246_+\|imelysin	gnl\|CDD\|226020	COG3489, COG3489, Predicted periplasmic lipoprotein [General function prediction only].	3.39487e-116
NZ_AP015029.1\|WP_095116027.1\|5371178_5372066_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|367175	pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain. Central domain of Acyl-CoA dehydrogenase has a beta-barrel fold.	4.54741e-09
NZ_AP015029.1\|WP_096426716.1\|5379404_5380004_+\|amino-acid-transporter	gnl\|CDD\|224198	COG1279, COG1279, Lysine efflux permease [General function prediction only].	1.07128e-69
NZ_AP015029.1\|WP_095116029.1\|5373837_5374425_-\|DUF479-domain-containing-protein	gnl\|CDD\|225666	COG3124, COG3124, Uncharacterized protein conserved in bacteria [Function unknown].	6.03221e-72
NZ_AP015029.1\|WP_016488911.1\|5372980_5373769_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	3.34429e-29
NZ_AP015029.1\|WP_096426718.1\|5385733_5387161_+\|c-type-cytochrome	gnl\|CDD\|226019	COG3488, COG3488, Predicted thiol oxidoreductase [Energy production and conversion].	0
NZ_AP015029.1\|WP_060517497.1\|5374895_5375945_+\|alkene-reductase	gnl\|CDD\|239243	cd02933, OYE_like_FMN, Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.	0
NZ_AP015029.1\|WP_016488905.1\|5367942_5369100_-\|phosphatidylserine/phosphatidylglycerophosphate/-cardiolipin-synthase-family-protein	gnl\|CDD\|224419	COG1502, Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism].	3.89056e-80
NZ_AP015029.1\|WP_096426715.1\|5370020_5371103_-\|serine-hydrolase	gnl\|CDD\|224594	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms].	3.90146e-33

>NZ_AP015029.1|WP_060517497.1|5374895_5375945_+|alkene-reductase
MTTLFDPITLGDLQLPNRIIMAPLTRCRADEGRVPNALMAEYYVQRASAGLILSEATSVTAMGVGYPDTPGIWNDEQVRGWNNVTKAVHAAGGRIFLQLWHVGRISHPSYLNGELPVAPSAIQPKGHVSLVRPLSDYPTPRALETEEINDIVEAYRSGAENAKAAGFDGVEIHGANGYLLDQFLQSSTNQRTDLYGGSLENRARLLLEVTDAAIEVWGANRVGVHLAPRADAHDMGDAHRAETFTYVARELGKRGIAFICSREREADDSIGPLIKEAFGGPYIVNERFDKASANAALASGKADAVAFGVPFIANPDLPARLAADAPLNEARPETFYGKGPVGYIDYPRL
>NZ_AP015029.1|WP_016488913.1|5374575_5374878_+|helix-turn-helix-transcriptional-regulator
MPLDLDEIIKALAHPVRREILSWLKDPATQFPDQYHSTENGVCAGQIDQRCGLSQSTVSAHLATLQRAGLISSQKIGQWHFFKRNEATIEAFLEQLRQTL
>NZ_AP015029.1|WP_095116029.1|5373837_5374425_-|DUF479-domain-containing-protein
MNYLAHLHLGGPAPQQLLGSLYGDFVKGSLEGRFPPALEAAIRLHRHIDSYTDQHPLVLAALARFPRERRRFAGIVLDVFFDHCLARHWGHYAEQPLAQFTGAFYRVLLAEPELPGRLARIAPFMAADDWLGAYGDFATLEQVFNGIARRLSRPEGMAGVMVELERLYEPLLADFREFYPQLQAFAAAQRRAEDL
>NZ_AP015029.1|WP_016488911.1|5372980_5373769_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MQKLRVVARLTRLLLVLLLGMFMASLIALGERLGFKAPLERRQRWTCLFMKRLVAALPFNVRVVGELPQRPMLWVSNHVSWTDIPLLGMLLPLSFLSKAEVRHWPVAGWLAEKAGTLFIRRGGGDSQRLHEQIAGQLGLARPLLIFPEGTTTCGRNLRTFHGRLLAGAIDRGAAVQPVAIQYLRDGQIDPIAPFIGDDDLVSHLMRLFAQPRGEVCIHLLPPIGSVGKERAVLALQAQQAIHLALFGVEEVEAVPRRPARAA
>NZ_AP015029.1|WP_016488910.1|5372225_5372981_+|GNAT-family-N-acetyltransferase
MTRIAHSGDNSTERRLQAERLVGAAALQEAQALRFKVFSAEFKAKLKGAEHGLDMDDYDVHCRHIGVRDLSTGELVATTRLLDHQAASSLGRFYSEEEFRLHGLLQLQGPILELGRTCVAPDYRNGGTIAVLWGELAEVLNEGRYSYLMGCASIPMQDGGVQAHAVMQRLRDRYLCNEHLRAEPKNPLPSLALPGNVIAEMPPLLKAYMRLGAKICGEPCWDEDFQVADVFILLKRDNLCPRYARHFKAAV
>NZ_AP015029.1|WP_095116027.1|5371178_5372066_-|acyl-CoA-dehydrogenase
MAWLQRLNDPLRHAPAGTLGETYAALLERLGPVVPFELAALGGRAMATPGLAFLVGYQAALRVLWPSAPSSLGALCATERRSVRPADMHTRLDGLRLTGSKDFVTAGLEAEWLLVAARSETAGAAPQLNLAVVYPGEPGVTLEPLPTLPLMPEVGHGRLLLEQAACELLAGDGWDAYVKPFRSLEDLYVLTALTAWLYGVGQESAWPQALRLQLLGLLAGCAEGSRQCADCTDGHLLLGGLFAQFQALRGAIDAALAAGPVHWAQIWQRDQGVMALAAAAREQRLNKAWAAAGLS
>NZ_AP015029.1|WP_096426715.1|5370020_5371103_-|serine-hydrolase
MLKGLLLVLCLALATAEAEDWPDPDWQNDPARFDWQAVDAYAFPPRTAPDRSGIRTDALLIIRDGRILHERYTAPTTAATAHLTWSVSKSVLATLMGVAQGEGRFQLEDPVTRFYPAMRGHPGIRMADLLHWASGLDWQEDYEYAPLKSSVVAMLYTRGREDMAAYTAARGAAASPGERFLYSSGDSILLAAALRGMLDAGQYPDYPWHALFSPLGIDSAVWERDGAGTYVGSSYLYLSARDLARIGLLMQRDGRWQGRQLLPTAWVAFNRTAFTHAEPVPGEANPGGHWWLNRPLAGAQRPWPSAPEDAYAALGHWGQALYVLPAQKLVIVRYADDRDGSYQHDELLKRVLAAVPREGT
>NZ_AP015029.1|WP_016488907.1|5369727_5370024_-|hypothetical-protein
MKRALLLVLLGLVFWAWQERQALADFPGILSAYSAKEYCSCRFVMGFGQAYCQGYVKQWLPLSLLEENSPQRRVTAEGLGRRNQASWQGPHEGCRLLP
>NZ_AP015029.1|WP_016488906.1|5369101_5369683_-|YceI-family-protein
MFKLPRLLPALLLALCLPAHANWHLDGESSRLSFITGKNGDTAEVHRFLVLHGTVDRKGVAGLSIEMDSVSSGIALRDERMREDLFEVERFAEAKVRAQLDLRPINDLANGAQIELRLPLTVTLHGQSHSYNALLLATRLDERRFQVVTLEPLVLRAEDFGLLPGLQTLRKFAGLTSINPSVPVSAVLIFTAR
>NZ_AP015029.1|WP_016488905.1|5367942_5369100_-|phosphatidylserine/phosphatidylglycerophosphate/-cardiolipin-synthase-family-protein
MPGPVFPWRDGNQFELLIDGPEFFPRMLAAIVRAEFQVDLELYLVEAGACAEAVVEALEQAARRGVRVRCLFDDYGSLAFNSALRQRLLEAGVYLRWYNRLRWKRGLRNLYRDHRKLLLVDERWAVVGGTGVTDEFWTPGDATSEWHEVMVQIQGPVVTDWQLLFDRQWGANNRRTAWRPAEGFGLPRLPKVPAQGQGMGRVAYADARQHQDILHSLVRALNSGKQRVWLATPYFLPTWSVRRSLRRAASKGLDVRLLLTGPRTDHPSVRYAGHRYYPRLLRAGVRIFEYQPCFLHLKMVVVDDWVSVGSCNFDHWNLRFNLEANIEALDPPLTAAVVASFERDFALSEEVDLDHWHARPLWRRVKQRIWGWIDRLVVNVLDRRD
>NZ_AP015029.1|WP_060517495.1|5377365_5378361_-|NAD(P)-dependent-oxidoreductase
MRILVTGASGFIGGRFARYALEQGLDVRVSGRRAEGVEHLVKRGAQFIPGDLGDPELARRLCQGIEAVVHCAGAVGNWGRYQDFYQGNVVVTENVVEGCLKEHVRRLVHLSSPSIYFNGRSRLDIREEQVPRRFHDHYGQTKHLAEQKVFGAQEFGLEVLALRPRFVTGAGDASIFPRLMQMQRKGRMAIIGNGLNKVDFTSVHNLNEALLSALFADERALGQAYNISNGQPLPLWDVVNYVMRQMQLPQVTRYRSYGLAYSLAALNEAACMLWPGRPQPTLSRLGMQVMSRDFTLDISRARQYLDYQPKVSLWTALDEFCGWWKHLPPAQ
>NZ_AP015029.1|WP_016488917.1|5378410_5379301_-|LysR-family-transcriptional-regulator-ArgP
MFDYKLLAALAAVIEQGGFERAAQVLGLSQSAISQRIKLLEARVGQPVLVRAAPPSPTEVGRQLLNHVQQVRLLERDLQRQVPALDEEGMPERLRIALNADSLATWWAGAVGNFCAQQNVLTDLVVEDQEVGLKRMRAGEVAACLCGSERPVAGARSLLLGAMRYRALASPGFMARHFPQGFVASRLARTPAIVYGPDDFLQHRYLASLGIEDGFLHHLCPSSEGFLRMTEAGLGWGLVPELQAREQLANGQLVEICSDTPIDVPLYWHHWRNGGQLLAQLTDHLRHTARQWLVPL
>NZ_AP015029.1|WP_096426716.1|5379404_5380004_+|amino-acid-transporter
MWQSYLNGMLVAFGLIMAIGAQNAFVLAQSLRREHHLPVAALCIVCDALLVAAGVFGLATVLAHNPTLLAVARWGGAVFLVWYGAKALRSACASQSLKHQQGQGVRSRRAVLLSALAVTLLNPHVYLDTVLLIGSLGAQQTEPGAYVAGAASASLLWFSTLAIGAAWLAPWLARPATWRMLDLMVAVMMFAVAAQLIFS
>NZ_AP015029.1|WP_016488919.1|5380200_5380797_+|superoxide-dismutase-[Fe]
MAFELPPLPYAHDALQPHISKETLEFHHDKHHNTYVVNLNNLVPGTEFEGKTLEEIVKSSSGGIFNNAAQVWNHTFYWNCLSPNGGGQPTGALAEAINTAFGSFDKFKEEFTKTSVGTFGSGWGWLVKKADGSLALASTIGAGCPLTSGDTPLLTCDVWEHAYYIDYRNLRPKYVEAFWNLVNWAFVAEQFEGKTFKA
>NZ_AP015029.1|WP_016488920.1|5381047_5383102_+|GGDEF-and-EAL-domain-containing-protein
MKLELRNSLSVKLLRVVLLSALAVGVVLSCAQIVYDTYKTRQAVNNDAQRILDMFRDPSTQAVYSLDREMGMQVMEGLFQDESVRMASIGHPNETMLAEKSRPLQDMPMRWLTDPILGQERTYTTQLVGRGPYSEYYGDLSITLDTSSYGEDFLINAVIIFISGVLRALAMGLVLYLVYHWLLTKPLSKIIEHLTQINPDRPSQHQIPLLKGHEKNELGLWVNTANQLLASIERNTHLRHEAENSLQRMAQYDFLTGLPNRQQLQQQLDKILVDGGRLQHRVAVLCVGLDDFKGINEQFSYQVGDQLLLALADRLRAHSGRLGALARLGGDQFALVQANIEQPYEAAELAQSILDDLEVPFDLDHHQQIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLAKARSRNRYQFYIASVDSEMRRRRELEKDLREALPRNQLYLVYQPQISYRDHRVVGVEALLRWQHPELGMVPPDQFIPLAEQNGSIISIGEWVLDQACRQLREWHDQGFSELRMAVNLSTVQLHHSELPRVVNNLLQAYRLPPRSLELEVTETGLMEDISTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLDKIKIDKSFVQDLLDDDDDATIVRAIIQLGKSLGMQVIAEGVETAEQETYIIAQGCHEGQGYHYSKPLSARELTHFLKQAQRNQVSML
>NZ_AP015029.1|WP_016488921.1|5383260_5384598_+|peptidase
MIRMPLASASLLAIAIALAGCGEGKDDKAAAPQAQAPAAASTTAAAPGAVDEAAGKAVVKHYAEMVYAVYSDSLSTAKTLQSAVDAFLAKPNDETLKAAKQAWVAARVPYLQTEAFRFGNTIIDDWEGQVNAWPLDEGLIDYVDKSYEHALGNPAAGANIIANTEIQVGEEKVDVKDITPEKLASLNELAGSEANVATGYHAIEFLLWGQDLNGTGPGAGNRPASDYLEGQGATGGHNDRRRTYLKAVTDLLVTDLEEMVGNWAPNVADNYRAKLEAEPVNDGLRKMLFGMGSLSLGELAGERMKVSLEANSPEDEQDCFSDNTHYSHFYDAKGIRNVYLGEYTRPDGTKVSGPSLSSLVAKADPAADATLKADLEATEAKIQVMVDHALKGEHYDQLIAADNAAGNQIVRDAIAALVKQTGSIEQAAGKLGIANLNPDTADHEF
>NZ_AP015029.1|WP_024717456.1|5384740_5385223_+|hypothetical-protein
MLQILDVWGEGRIVQRVNGRNLVTGFTHAYNLNKAGQLISNGPFTGRHIPNLIVVYEYDAPDFPLDDHAVPHVTLMGAPITHHVAEEICRVVARPGKVYLYDPNETDRKMFEAVAFAQGLQPMGRFVPAELAPPFNEITLLAAYVYRTPTAPLPRPEIQH
>NZ_AP015029.1|WP_096426717.1|5385236_5385623_+|hypothetical-protein
MASLTYLHSIANNTPYTLTLIDGENRSQSLAIGAQQAWNGSLAVPWIGKSSENHKALRLILGPNAETNIWVFQDYWQPAHKDAIKCLTASSMEYASEEVIEVPGDNRDGGSKNLIISLVNREFKMLMA
>NZ_AP015029.1|WP_096426718.1|5385733_5387161_+|c-type-cytochrome
MSSSLFRLSPLLLAFALAACDDAPRFTQAEPGEALSAGKATVQRADRNAYSLPSANLSPERRVDFAVGNSFFRNPWVIAPSTTTARDGLGPLFNTNACQNCHVRDGRGHPPAPGDSNAVGMLVRLSIPDQPYLAKVIERLGVVPEPVYGTQLQDMAIPGVAPEGKVRVSYTQQTVSFKDGHQVELRKPALQITQLGYGVMHPDTRFSARVAPPMIGLGLLEAIPEADLLANEDPDDRNHDGIRGRANRVWDDAQGKTVIGRFGWKAGQPNVNQQNVHAFAGDMGLTSTLQPHDDCTPAQADCLAAPNGDGANGEKEVSDNILRLVTFYTRNLAVPARRVVGAPQVLAGKNLFYQAGCQGCHTPQFTTAAETTEPELANQVIRPYSDLLLHDMGPGLADERTEFAANGQDWRTAPLWGIGLSETVAGHSQFLHDGRARNLLEAVLWHGGEAEAARNFVLTFNAEQRTALLAFLNSL
>NZ_AP015029.1|WP_096426719.1|5387181_5388246_+|imelysin
MFRPKLLFTSLAALALGACSPQDPQAVTSAAIAKQVILPTYSRWVEADRTLAASALAYCEGKEDLAKARADFLNAQKAWAELQPLLVGPLAEGNRAWQVQFWPDKKNLVGRQVEQLVNGDKPVNAATLGKASVVVRGLSAYEYILFDSKPDIATAEQKARYCPLLVAIGEHQKVLAEEILKGWNSTDGMLSQMTKFPNQRYADSHEAIADLLRSQVTALDTLKKKLGAPMGRQSKGIPQPLQAEAWRSHNSLKSLEATLKAAETVWVGVDNQGLRGLLPSDQKALADKIDAAYATSLKLLADNQKTLGELLANDAGQQTLNQLYDSLNAVHRLHEGELAKALNIQLGFNANDGD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

268893 : 371801

107

Pseudomonas_virus(33.33%)

plate,terminase,lysis,protease,tail,holin,capsid,portal,integrase,head

attL 307724:307771|attR 341729:341776

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024717584.1\|268893_269376_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_016484410.1\|269485_269887_+	RNA-binding protein S4	NA	NA	NA	NA
WP_016484411.1\|270001_270796_-	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_095116611.1\|270917_271817_+	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA
WP_060518076.1\|271996_273538_+	phosphoenolpyruvate carboxykinase	A0A2H4PQN1	Staphylococcus_phage	5.6e-125	46.7
WP_016484414.1\|273750_274191_+	thioesterase family protein	NA	NA	NA	NA
WP_016484415.1\|274245_274725_-	hypothetical protein	NA	NA	NA	NA
WP_096425462.1\|274921_277267_-	FdhF/YdeP family oxidoreductase	NA	NA	NA	NA
WP_070086869.1\|277272_278103_-	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA
WP_016484418.1\|278280_278721_+	peptidoglycan-binding protein LysM	G3MBQ1	Bacillus_virus	4.3e-06	47.5
WP_095116612.1\|278833_279496_-	GMP/IMP nucleotidase	NA	NA	NA	NA
WP_016484420.1\|279560_280127_+	ADP compounds hydrolase NudE	NA	NA	NA	NA
WP_096425463.1\|280123_280942_+	3'(2'),5'-bisphosphate nucleotidase CysQ	NA	NA	NA	NA
WP_016484422.1\|281019_281475_-	YiiD C-terminal domain-containing protein	NA	NA	NA	NA
WP_096425464.1\|281474_282881_-	sigma-54-dependent Fis family transcriptional regulator	W8CYM9	Bacillus_phage	6.6e-08	28.7
WP_016484424.1\|282877_284692_-	sensor histidine kinase	NA	NA	NA	NA
WP_016484425.1\|284734_285280_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	3.0e-49	53.4
WP_095116614.1\|285558_286665_+	agmatine deiminase	M1I1E2	Acanthocystis_turfacea_Chlorella_virus	5.6e-103	50.8
WP_016484427.1\|286848_287046_+	hypothetical protein	NA	NA	NA	NA
WP_016484428.1\|287179_289255_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_016484429.1\|289730_291050_+	OprD family porin	NA	NA	NA	NA
WP_016484430.1\|291080_292748_-	FMN-binding glutamate synthase family protein	NA	NA	NA	NA
WP_096426925.1\|292978_294346_-	HAMP domain-containing protein	NA	NA	NA	NA
WP_096425465.1\|294347_295070_-	response regulator	W8CYM9	Bacillus_phage	1.1e-30	34.8
WP_096425466.1\|295210_297508_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_024717587.1\|297632_297839_-	DUF3079 domain-containing protein	NA	NA	NA	NA
WP_102668038.1\|297890_298100_-	Abi family protein	NA	NA	NA	NA
WP_096425467.1\|298269_299880_+	sensor domain-containing diguanylate cyclase	NA	NA	NA	NA
WP_157754387.1\|300530_301208_+	N-acetyltransferase	NA	NA	NA	NA
WP_139137840.1\|301200_302025_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_054888396.1\|302017_303085_+	beta family protein	NA	NA	NA	NA
WP_139137841.1\|303065_303632_-	sce7726 family protein	NA	NA	NA	NA
WP_054888398.1\|304330_305311_-\|integrase	integrase domain-containing protein	NA	NA	NA	NA
WP_054888399.1\|306241_307561_-\|integrase	integrase arm-type DNA-binding domain-containing protein	Q7M297	Enterobacteria_phage	1.2e-64	34.2
307724:307771	attL	NA	NA	NA	NA
WP_029885337.1\|307866_309039_-\|integrase	integrase	V9IQN0	Stenotrophomonas_phage	6.4e-73	40.4
WP_029885335.1\|309477_309708_-	hypothetical protein	NA	NA	NA	NA
WP_172901721.1\|309704_309878_-	hypothetical protein	NA	NA	NA	NA
WP_029885333.1\|310519_310813_-	hypothetical protein	NA	NA	NA	NA
WP_029885332.1\|310826_313625_-	toprim domain-containing protein	A0A2H4J936	uncultured_Caudovirales_phage	0.0e+00	63.2
WP_029885331.1\|313636_313879_-	hypothetical protein	A0A2H4JGL7	uncultured_Caudovirales_phage	2.0e-13	53.8
WP_029885330.1\|313956_314325_-	hypothetical protein	A0A2H4J947	uncultured_Caudovirales_phage	2.5e-07	33.3
WP_029885329.1\|314321_314624_-	ogr/Delta-like zinc finger family protein	Q9ZXJ1	Pseudomonas_virus	2.5e-13	44.1
WP_029885328.1\|314620_315106_-	hypothetical protein	A0A2H4JG61	uncultured_Caudovirales_phage	3.4e-44	56.5
WP_029885327.1\|315136_315337_-	DNA-binding protein	NA	NA	NA	NA
WP_029885326.1\|315413_315746_+	helix-turn-helix transcriptional regulator	A0A2H4JFL3	uncultured_Caudovirales_phage	8.0e-21	48.1
WP_029885325.1\|315826_316297_+	hypothetical protein	NA	NA	NA	NA
WP_029885324.1\|316580_317846_-	phage late control D family protein	Q9ZXJ8	Pseudomonas_virus	3.8e-164	70.8
WP_029885323.1\|317842_318283_-\|tail	phage tail protein	A0A2H4JG54	uncultured_Caudovirales_phage	1.8e-57	72.6
WP_050492178.1\|318289_322006_-\|tail	phage tail tape measure protein	F1BUT7	Erwinia_phage	5.0e-87	44.9
WP_016484463.1\|321995_322115_-\|tail	GpE family phage tail protein	Q9ZXK1	Pseudomonas_virus	3.2e-09	71.8
WP_029885321.1\|322123_322462_-\|tail	phage tail assembly protein	Q9ZXK2	Pseudomonas_virus	1.8e-20	57.9
WP_029885320.1\|322482_322998_-\|tail	phage major tail tube protein	Q9ZXK3	Pseudomonas_virus	7.9e-68	71.3
WP_029885319.1\|323012_324185_-\|tail	phage tail sheath protein	Q9ZXK4	Pseudomonas_virus	4.0e-168	74.6
WP_029885318.1\|324286_324748_-	hypothetical protein	A0A077K9S5	Ralstonia_phage	1.3e-21	50.8
WP_029885317.1\|324770_325511_-	hypothetical protein	NA	NA	NA	NA
WP_029885316.1\|325517_326396_-\|tail	phage tail protein	A2I2X8	Vibrio_virus	1.5e-21	39.4
WP_029885315.1\|326392_327205_-\|tail	phage tail protein I	F1BUP2	Erwinia_phage	2.8e-11	28.3
WP_029885314.1\|327201_328200_-\|plate	baseplate J/gp47 family protein	E5G6N8	Salmonella_phage	1.9e-62	43.7
WP_029885313.1\|328211_328556_-	GPW/gp25 family protein	Q9ZXK9	Pseudomonas_virus	3.5e-27	54.0
WP_029885312.1\|328552_329128_-\|plate	phage baseplate assembly protein V	Q9ZXL0	Pseudomonas_virus	2.0e-64	63.5
WP_029885311.1\|329188_329644_-	phage virion morphogenesis protein	A0A2H4J927	uncultured_Caudovirales_phage	6.2e-40	58.8
WP_029885310.1\|329636_330170_-\|tail	phage tail protein	Q9ZXL3	Pseudomonas_virus	7.5e-53	59.8
WP_029885309.1\|330244_330718_-\|lysis	phage lysis regulatory protein, LysB family	Q9ZXL5	Pseudomonas_virus	1.0e-16	41.6
WP_029885308.1\|330714_330924_-	hypothetical protein	NA	NA	NA	NA
WP_029885307.1\|330920_331760_-	DUF3380 domain-containing protein	Q9ZXL6	Pseudomonas_virus	3.9e-88	61.9
WP_016484478.1\|331756_332074_-\|holin	phage holin, lambda family	A0A2H4JFM8	uncultured_Caudovirales_phage	3.7e-23	52.4
WP_029885306.1\|332107_332320_-\|tail	tail protein X	Q9ZXL9	Pseudomonas_virus	3.3e-20	74.2
WP_029885305.1\|332319_332796_-\|head	head completion/stabilization protein	Q9ZXM1	Pseudomonas_virus	3.5e-46	61.4
WP_029885304.1\|332893_333595_-\|terminase	terminase endonuclease subunit	Q9ZXM2	Pseudomonas_virus	5.5e-64	58.8
WP_029885303.1\|333598_334669_-\|capsid	phage major capsid protein, P2 family	A0A2H4JCR7	uncultured_Caudovirales_phage	2.0e-137	72.5
WP_029885302.1\|334702_335551_-\|capsid	GPO family capsid scaffolding protein	A0A2H4J928	uncultured_Caudovirales_phage	2.6e-84	59.9
WP_029885301.1\|335703_337455_+\|terminase	terminase ATPase subunit family protein	A0A2H4JGK4	uncultured_Caudovirales_phage	1.4e-270	79.9
WP_050492177.1\|337454_338498_+\|portal	phage portal protein	A0A2H4J922	uncultured_Caudovirales_phage	7.8e-155	77.6
WP_029885299.1\|338600_339410_-	hypothetical protein	NA	NA	NA	NA
WP_029885298.1\|339574_339811_-	hypothetical protein	NA	NA	NA	NA
WP_096425468.1\|339819_340059_-	hypothetical protein	NA	NA	NA	NA
WP_033744332.1\|340204_341002_-	hypothetical protein	A6XMM0	Bacillus_virus	2.4e-23	57.3
WP_060518051.1\|341902_342151_-	hypothetical protein	NA	NA	NA	NA
341729:341776	attR	NA	NA	NA	NA
WP_016484491.1\|342717_342987_+	DUF3077 domain-containing protein	NA	NA	NA	NA
WP_096425469.1\|343262_344468_-	methyltransferase	NA	NA	NA	NA
WP_016497592.1\|344595_345285_-	ABC transporter permease	NA	NA	NA	NA
WP_016497593.1\|345284_345977_-	ABC transporter permease	NA	NA	NA	NA
WP_016484495.1\|346031_346784_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_016484496.1\|346795_347569_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	8.4e-21	32.0
WP_016484497.1\|348208_349594_+	GABA permease	NA	NA	NA	NA
WP_016484498.1\|349773_350217_-	hypothetical protein	NA	NA	NA	NA
WP_016484499.1\|350348_350885_+	hypothetical protein	NA	NA	NA	NA
WP_161775548.1\|350890_351763_-	polyphosphate kinase 2	NA	NA	NA	NA
WP_016484501.1\|352207_352480_-	oxidative damage protection protein	NA	NA	NA	NA
WP_016484502.1\|352476_353544_-	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_070086619.1\|353540_355787_-	AsmA family protein	NA	NA	NA	NA
WP_016484504.1\|356171_357833_+	OFA family MFS transporter	NA	NA	NA	NA
WP_023532883.1\|358052_358646_+	imidazoleglycerol-phosphate dehydratase HisB	NA	NA	NA	NA
WP_016484506.1\|358646_359285_+	imidazole glycerol phosphate synthase subunit HisH	NA	NA	NA	NA
WP_016484507.1\|359285_359546_+	DUF2164 domain-containing protein	NA	NA	NA	NA
WP_016484508.1\|359573_360311_+	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	NA	NA	NA	NA
WP_008091498.1\|360321_361092_+	imidazole glycerol phosphate synthase subunit HisF	NA	NA	NA	NA
WP_016484509.1\|361209_362388_-\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.1e-24	36.7
WP_169725175.1\|362384_363233_-\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_016484511.1\|363314_364262_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_016484512.1\|364715_366092_+	L-serine ammonia-lyase	NA	NA	NA	NA
WP_016484513.1\|366585_367692_+	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_016484514.1\|367855_368113_-	hypothetical protein	NA	NA	NA	NA
WP_096425470.1\|368383_368854_-	thioesterase family protein	NA	NA	NA	NA
WP_096425471.1\|368864_369830_-	L-carnitine dehydrogenase	NA	NA	NA	NA
WP_016484517.1\|369848_370733_-	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA
WP_096425472.1\|370856_371801_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA

DBSCAN-SWA_2

1204585 : 1212365

Thermobifida_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016485035.1\|1204585_1205440_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	1.2e-07	31.0
WP_016485036.1\|1205442_1205907_-	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA
WP_016485037.1\|1205919_1206228_-	ribosome-associated translation inhibitor RaiA	A0A0M7QCF2	Escherichia_phage	4.4e-05	34.1
WP_024717623.1\|1206307_1207801_-	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_003255132.1\|1207978_1208704_-	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.4e-23	26.5
WP_096425615.1\|1208704_1209229_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA
WP_016485040.1\|1209215_1209788_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_023046949.1\|1209796_1210321_-	HAD family hydrolase	A0A140XBD6	Dickeya_phage	9.0e-27	48.1
WP_016485042.1\|1210332_1211307_-	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	1.3e-34	34.3
WP_016485043.1\|1211555_1212365_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	7.7e-25	32.1

DBSCAN-SWA_3

1429990 : 1488684

Cafeteria_roenbergensis_virus(11.11%)

tRNA,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016485213.1\|1429990_1431343_+\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_096425675.1\|1431416_1433777_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_012270843.1\|1433821_1434325_+	OmpH family outer membrane protein	NA	NA	NA	NA
WP_016485215.1\|1434326_1435382_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_008094893.1\|1435496_1435937_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_016485216.1\|1435933_1436710_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_096425676.1\|1436711_1437839_+	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_023048359.1\|1437840_1438464_+	ribonuclease HII	E3T5H8	Cafeteria_roenbergensis_virus	4.7e-22	42.0
WP_016485219.1\|1438674_1442199_+	DNA polymerase III subunit alpha	A0A2L1IZ23	Streptomyces_phage	4.6e-191	36.2
WP_024717683.1\|1442306_1443254_+	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA
WP_096425677.1\|1443386_1444670_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_016485222.1\|1444940_1446569_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	4.0e-158	53.1
WP_012270852.1\|1446572_1447418_+	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	8.5e-51	42.0
WP_016485223.1\|1447571_1448861_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	1.6e-138	59.2
WP_016485224.1\|1449029_1449311_+	cell division protein FtsB	NA	NA	NA	NA
WP_095117280.1\|1449307_1450015_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_023048356.1\|1450049_1450946_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_016485227.1\|1451053_1452166_+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	8.0e-33	29.5
WP_096425678.1\|1452174_1453029_+	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_016485229.1\|1453205_1453679_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_096425679.1\|1453675_1454734_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_016485231.1\|1454721_1455471_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.7e-66	52.2
WP_015269209.1\|1455506_1456145_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.7e-40	51.2
WP_016485232.1\|1456384_1457242_+	peptidoglycan DD-metalloendopeptidase family protein	I3PV79	Clostridium_phage	1.9e-13	36.2
WP_003252351.1\|1457350_1458358_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	5.0e-34	35.8
WP_016485233.1\|1458940_1459264_-	ferredoxin family protein	NA	NA	NA	NA
WP_060519606.1\|1459404_1461978_-	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	6.9e-27	23.4
WP_023047667.1\|1462165_1463233_+	hypothetical protein	NA	NA	NA	NA
WP_016485236.1\|1463287_1463770_+	CinA family protein	B5TK85	Pseudomonas_phage	3.1e-58	76.7
WP_096425680.1\|1464495_1465539_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	1.9e-108	60.2
WP_096425681.1\|1465909_1467289_-\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_034018616.1\|1467581_1468964_-\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_096425682.1\|1469117_1470146_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	2.1e-43	35.6
WP_096425683.1\|1470326_1471691_+	benzoate 1,2-dioxygenase large subunit	NA	NA	NA	NA
WP_096425684.1\|1471687_1472176_+	benzoate 1,2-dioxygenase small subunit	NA	NA	NA	NA
WP_096425685.1\|1472278_1473289_+	ring-hydroxylating dioxygenase ferredoxin reductase family protein	NA	NA	NA	NA
WP_096425686.1\|1473431_1474196_+	1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase	NA	NA	NA	NA
WP_096425687.1\|1474708_1475035_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_096426936.1\|1476846_1478069_-\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	1.2e-111	70.3
WP_096425688.1\|1477975_1478998_+	outer membrane porin, OprD family	NA	NA	NA	NA
WP_096425689.1\|1479244_1480459_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_090313850.1\|1480549_1481410_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_096425690.1\|1481425_1482463_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_096425691.1\|1482462_1483221_+	ABC transporter ATP-binding protein	A0A1M7XV31	Cedratvirus	6.3e-13	26.6
WP_096426937.1\|1483238_1483970_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.5e-14	25.1
WP_096425692.1\|1484164_1485109_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_096425693.1\|1485336_1485651_-	hypothetical protein	NA	NA	NA	NA
WP_004423344.1\|1486392_1486683_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_004423345.1\|1486679_1487024_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	1.1e-12	33.7
WP_011911868.1\|1487145_1488684_+\|transposase	IS66 family transposase	NA	NA	NA	NA

DBSCAN-SWA_4

2220880 : 2282752

Bacillus_virus(10.0%)

coat,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016485885.1\|2220880_2222164_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	8.1e-138	58.3
WP_060518931.1\|2222327_2224724_+	endopeptidase La	A0A0R6PGP8	Moraxella_phage	5.7e-217	52.0
WP_016485887.1\|2224876_2225149_+	HU family DNA-binding protein	A3E2K9	Sodalis_phage	7.7e-22	64.0
WP_096425867.1\|2225330_2227202_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA
WP_016485889.1\|2227326_2228367_-	patatin-like phospholipase family protein	NA	NA	NA	NA
WP_003250254.1\|2228545_2228824_+	lipoprotein	NA	NA	NA	NA
WP_024717591.1\|2228838_2229606_+	CHAD domain-containing protein	NA	NA	NA	NA
WP_016485890.1\|2229694_2230492_+	thioesterase family protein	NA	NA	NA	NA
WP_016485891.1\|2230628_2230997_-	DUF962 domain-containing protein	NA	NA	NA	NA
WP_016485892.1\|2231072_2232551_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	7.9e-28	31.1
WP_016485893.1\|2232660_2233458_-	TatD family hydrolase	NA	NA	NA	NA
WP_016485894.1\|2233615_2235022_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA
WP_016485895.1\|2235233_2235542_+	hypothetical protein	NA	NA	NA	NA
WP_096425868.1\|2235553_2236027_+	transcription elongation factor GreB	NA	NA	NA	NA
WP_096425869.1\|2236091_2238599_-	ABC transporter permease	NA	NA	NA	NA
WP_016485898.1\|2238598_2239282_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.1e-35	38.4
WP_016485899.1\|2239292_2239898_+	arylesterase	NA	NA	NA	NA
WP_016485900.1\|2239956_2240247_+	hypothetical protein	NA	NA	NA	NA
WP_016485901.1\|2240360_2241338_+	L,D-transpeptidase family protein	NA	NA	NA	NA
WP_003259780.1\|2241470_2241722_-	hypothetical protein	NA	NA	NA	NA
WP_003250290.1\|2242230_2242512_+	N-acetyltransferase	NA	NA	NA	NA
WP_016485902.1\|2242647_2243724_-	3-deoxy-7-phosphoheptulonate synthase	A0A2I6UFP9	Klebsiella_phage	6.3e-83	50.5
WP_060518840.1\|2243957_2244905_+	putative 2-dehydropantoate 2-reductase	NA	NA	NA	NA
WP_016485904.1\|2245040_2245538_+	universal stress protein	NA	NA	NA	NA
WP_016485905.1\|2245666_2246641_+	HTH-type transcriptional regulator CysB	NA	NA	NA	NA
WP_016500538.1\|2246680_2247415_-	phosphoadenylyl-sulfate reductase	NA	NA	NA	NA
WP_016485907.1\|2247494_2248838_-	aminodeoxychorismate synthase component I	S4VT78	Pandoravirus	4.5e-46	32.7
WP_060518838.1\|2249046_2250027_-	alpha-L-glutamate ligase-like protein	NA	NA	NA	NA
WP_016485909.1\|2250026_2251562_-	inactive transglutaminase family protein	NA	NA	NA	NA
WP_016485910.1\|2251567_2252104_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_016485911.1\|2252410_2253127_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_016485912.1\|2253123_2254014_+	methylisocitrate lyase	NA	NA	NA	NA
WP_016485913.1\|2254072_2255200_+	2-methylcitrate synthase	NA	NA	NA	NA
WP_016485914.1\|2255393_2257982_+	Fe/S-dependent 2-methylisocitrate dehydratase AcnD	NA	NA	NA	NA
WP_070086792.1\|2258132_2259323_+	2-methylaconitate cis-trans isomerase PrpF	NA	NA	NA	NA
WP_016485916.1\|2259395_2260880_+	2-methylcitrate dehydratase	NA	NA	NA	NA
WP_016485917.1\|2260954_2263564_-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	NA	NA	NA	NA
WP_161775554.1\|2263970_2264453_+	DUF1289 domain-containing protein	NA	NA	NA	NA
WP_012271598.1\|2264463_2264820_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA
WP_016485919.1\|2264873_2265953_-	patatin-like phospholipase family protein	NA	NA	NA	NA
WP_016485920.1\|2266146_2266455_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_016485921.1\|2266454_2266769_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_016485922.1\|2266769_2267438_+	response regulator transcription factor	NA	NA	NA	NA
WP_016485923.1\|2267434_2268754_+	sensor histidine kinase	NA	NA	NA	NA
WP_095114807.1\|2269024_2270179_+	HPP family protein	NA	NA	NA	NA
WP_023049247.1\|2270152_2271019_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_070086769.1\|2271197_2273087_+	propionyl-CoA synthetase	A0A2H4PQU7	Staphylococcus_phage	6.3e-54	29.3
WP_096425870.1\|2273212_2274283_-	cell division protein ZapE	NA	NA	NA	NA
WP_016485928.1\|2274410_2274653_-	hypothetical protein	NA	NA	NA	NA
WP_023048722.1\|2275204_2277592_-	hybrid sensor histidine kinase/response regulator	Q8QKV7	Ectocarpus_siliculosus_virus	5.1e-08	23.4
WP_016485929.1\|2277605_2278067_-	response regulator	NA	NA	NA	NA
WP_096425871.1\|2278082_2280329_-	GAF domain-containing protein	B5LWN8	Feldmannia_species_virus	3.6e-24	24.2
WP_016485931.1\|2280598_2281126_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_096425872.1\|2281156_2281693_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_016485933.1\|2281711_2282245_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_016485934.1\|2282248_2282752_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA

DBSCAN-SWA_5

3799855 : 3845729

Pseudomonas_phage(64.0%)

terminase,integrase,transposase

attL 3837916:3837930|attR 3851187:3851201

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096426270.1\|3799855_3802120_-	hypothetical protein	A0A0U4B0B2	Pseudomonas_phage	2.9e-05	59.6
WP_096426271.1\|3802176_3805230_-	hypothetical protein	B5WZT8	Pseudomonas_phage	3.3e-214	40.1
WP_020193253.1\|3805226_3805604_-	hypothetical protein	B5WZT7	Pseudomonas_phage	6.1e-25	43.3
WP_096426272.1\|3805606_3806086_-	DUF1833 family protein	J7I404	Pseudomonas_phage	5.9e-25	42.0
WP_095114787.1\|3806082_3806535_-\|transposase	transposase	A0A2H4PI05	Pseudomonas_phage	3.5e-11	27.0
WP_096426273.1\|3806714_3810746_-	tape measure protein	A0A059VJZ1	Pseudomonas_phage	1.1e-39	28.6
WP_096426275.1\|3811057_3811582_-	hypothetical protein	NA	NA	NA	NA
WP_096426276.1\|3811639_3812809_-	Ig-like domain-containing protein	A0A059VG08	Pseudomonas_phage	1.5e-53	38.1
WP_096426277.1\|3812870_3813275_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_096426278.1\|3813271_3813661_-	HK97 gp10 family phage protein	A0A059VF88	Pseudomonas_phage	6.5e-30	50.4
WP_096426279.1\|3813663_3814047_-	glutamate 5-kinase	A0A059VA70	Pseudomonas_phage	7.3e-26	49.2
WP_096426280.1\|3814048_3814420_-	hypothetical protein	A0A0S2SYB7	Pseudomonas_phage	7.3e-31	58.3
WP_096426281.1\|3814419_3814713_-	hypothetical protein	A0A0H5BBX8	Pseudomonas_phage	1.4e-05	52.9
WP_096426282.1\|3814754_3815723_-	hypothetical protein	A0A0H5ARK0	Pseudomonas_phage	2.4e-142	79.8
WP_096426283.1\|3815732_3816479_-	hypothetical protein	A0A0H5AWD1	Pseudomonas_phage	9.0e-105	81.7
WP_096426284.1\|3816630_3817707_-	hypothetical protein	A0A0H5BBX3	Pseudomonas_phage	1.3e-96	51.2
WP_172901740.1\|3817706_3819086_-	DUF4055 domain-containing protein	A0A0H5AWC7	Pseudomonas_phage	2.0e-174	65.0
WP_096426286.1\|3819088_3820369_-\|terminase	terminase	A0A2H4IY82	uncultured_Caudovirales_phage	2.2e-204	82.9
WP_096426287.1\|3820343_3821093_-\|terminase	terminase small subunit	A0A248SKT2	Klebsiella_phage	9.2e-57	50.9
WP_064492775.1\|3821131_3821572_-	hypothetical protein	A0A2H4J821	uncultured_Caudovirales_phage	3.9e-39	60.7
WP_172901741.1\|3821568_3821733_-	hypothetical protein	A0A2H4J789	uncultured_Caudovirales_phage	1.5e-17	72.2
WP_096426288.1\|3821743_3821974_-	hypothetical protein	A0A1S6UB66	Serratia_phage	2.8e-17	62.0
WP_096426289.1\|3822029_3822299_-	hypothetical protein	A0A1B0VME7	Pseudomonas_phage	1.3e-16	56.5
WP_096426290.1\|3822298_3822610_-	peptidase M48, Ste24p	A0A1B0VME9	Pseudomonas_phage	3.2e-16	49.5
WP_096426291.1\|3822784_3823294_-	acyloxyacyl hydrolase	A0A2H4J0I5	uncultured_Caudovirales_phage	1.1e-85	98.2
WP_096426292.1\|3823521_3824208_-	hypothetical protein	J7HXH6	Pseudomonas_phage	7.9e-55	50.2
WP_172901742.1\|3824204_3824354_-	hypothetical protein	A0A2H4J3D6	uncultured_Caudovirales_phage	2.8e-10	68.8
WP_096426293.1\|3824350_3824710_-	endodeoxyribonuclease RusA	NA	NA	NA	NA
WP_096426294.1\|3824706_3825009_-	DUF1364 family protein	A0A2K8HR56	Pseudomonas_phage	3.8e-22	51.0
WP_096426295.1\|3825005_3825593_-	DUF1367 family protein	Q9MC49	Pseudomonas_phage	4.9e-98	86.2
WP_096426296.1\|3825585_3825864_-	hypothetical protein	A0A2H4J8S0	uncultured_Caudovirales_phage	7.4e-20	58.2
WP_096426297.1\|3825860_3826205_-	hypothetical protein	A0A2H4JG78	uncultured_Caudovirales_phage	6.3e-29	100.0
WP_096426298.1\|3826204_3826396_-	hypothetical protein	NA	NA	NA	NA
WP_096426299.1\|3826395_3827202_-	hypothetical protein	A0A1B0VMD9	Pseudomonas_phage	7.8e-62	53.4
WP_054881787.1\|3827188_3828172_-	hypothetical protein	A0A1B0VME0	Pseudomonas_phage	2.6e-112	71.6
WP_157754407.1\|3828589_3828739_-	hypothetical protein	NA	NA	NA	NA
WP_096426300.1\|3828735_3829551_-	Rha family transcriptional regulator	Q8W644	Enterobacteria_phage	2.2e-40	53.3
WP_096426301.1\|3829680_3829890_-	hypothetical protein	NA	NA	NA	NA
WP_096426302.1\|3829910_3830117_-	hypothetical protein	NA	NA	NA	NA
WP_084966458.1\|3830377_3830566_-	hypothetical protein	B5WZX7	Pseudomonas_phage	1.2e-13	62.9
WP_172901763.1\|3830598_3830796_-	helix-turn-helix domain-containing protein	A0A0M4QX15	Salmonella_phage	2.0e-11	53.8
WP_096426967.1\|3830924_3831635_+	helix-turn-helix domain-containing protein	W6MVG5	Pseudomonas_phage	6.6e-73	59.8
WP_096426304.1\|3831665_3831974_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_096426305.1\|3832398_3833043_+	hypothetical protein	A0A0U4IID7	Pseudomonas_phage	4.4e-100	80.4
WP_096426306.1\|3833747_3834161_+	hypothetical protein	W6MVG2	Pseudomonas_phage	7.1e-35	54.1
WP_096426307.1\|3834182_3834437_+	hypothetical protein	NA	NA	NA	NA
WP_096426308.1\|3834433_3834664_+	hypothetical protein	NA	NA	NA	NA
WP_096426309.1\|3834660_3834855_+	hypothetical protein	NA	NA	NA	NA
WP_096426310.1\|3835013_3835322_+	hypothetical protein	NA	NA	NA	NA
WP_157754409.1\|3835318_3835465_+	hypothetical protein	NA	NA	NA	NA
WP_049696254.1\|3835473_3836106_+	AAA family ATPase	A0A059VF62	Pseudomonas_phage	2.6e-84	72.6
WP_096426311.1\|3836117_3836774_+	hypothetical protein	A0A059VFZ1	Pseudomonas_phage	7.7e-84	72.6
WP_096426312.1\|3836835_3837501_+	3'-5' exonuclease	A0A059VJT9	Pseudomonas_phage	1.0e-91	71.3
WP_096426313.1\|3837504_3837693_+	hypothetical protein	NA	NA	NA	NA
WP_096426314.1\|3837774_3838140_+	hypothetical protein	A0A2H4J0L9	uncultured_Caudovirales_phage	1.1e-55	89.3
3837916:3837930	attL	NA	NA	NA	NA
WP_096426315.1\|3838114_3838474_+	hypothetical protein	A0A2H4JAQ1	uncultured_Caudovirales_phage	3.9e-13	44.8
WP_016487804.1\|3838553_3838934_+	hypothetical protein	A0A2H4J2C6	uncultured_Caudovirales_phage	5.0e-35	55.1
WP_172901743.1\|3838980_3839691_+	Lar family restriction alleviation protein	K4NZ01	Pseudomonas_phage	1.2e-05	32.4
WP_096426318.1\|3840434_3840929_+	hypothetical protein	I2GUG5	Acinetobacter_phage	2.7e-09	32.7
WP_096426319.1\|3840925_3841177_+	hypothetical protein	A0A2H4J399	uncultured_Caudovirales_phage	2.9e-39	95.2
WP_096426968.1\|3841221_3841548_+	hypothetical protein	NA	NA	NA	NA
WP_096426320.1\|3841544_3842006_+	DUF2591 domain-containing protein	A0A1B0VMD7	Pseudomonas_phage	3.6e-11	33.8
WP_096426321.1\|3841993_3842326_+	hypothetical protein	NA	NA	NA	NA
WP_172901744.1\|3842322_3842499_+	hypothetical protein	A0A2H4J7S3	uncultured_Caudovirales_phage	3.3e-26	93.1
WP_046787169.1\|3842788_3843967_+\|integrase	tyrosine-type recombinase/integrase	A0A059VF45	Pseudomonas_phage	7.0e-160	70.1
WP_096426322.1\|3844271_3845729_+\|integrase	site-specific integrase	A0A2H4IYX8	uncultured_Caudovirales_phage	4.6e-52	38.6
3851187:3851201	attR	NA	NA	NA	NA

DBSCAN-SWA_6

4109970 : 4176013

Pseudomonas_phage(43.48%)

tRNA,terminase,protease,tail,capsid,portal,integrase,head

attL 4112524:4112538|attR 4177608:4177622

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060517119.1\|4109970_4110384_-\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_016488005.1\|4110791_4111034_+	hypothetical protein	NA	NA	NA	NA
WP_016488006.1\|4111055_4111325_+	DUF3077 domain-containing protein	NA	NA	NA	NA
WP_096426450.1\|4111424_4112345_-	LysR family transcriptional regulator	NA	NA	NA	NA
4112524:4112538	attL	NA	NA	NA	NA
WP_080641109.1\|4112552_4113365_+	sugar phosphate isomerase/epimerase	NA	NA	NA	NA
WP_096426451.1\|4113361_4114141_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_096426452.1\|4114179_4115490_+	MHS family MFS transporter	Q6JIH2	Burkholderia_virus	2.7e-43	32.3
WP_016488012.1\|4115858_4116107_-	entry exclusion lipoprotein TrbK	NA	NA	NA	NA
WP_096426453.1\|4116467_4116731_+	hypothetical protein	NA	NA	NA	NA
WP_096426454.1\|4116916_4117222_-	hypothetical protein	NA	NA	NA	NA
WP_096426456.1\|4117586_4117811_-	hypothetical protein	A0A2H4JG60	uncultured_Caudovirales_phage	1.3e-27	81.1
WP_096426457.1\|4117947_4119003_-	acyltransferase	A0A2H4JA46	uncultured_Caudovirales_phage	3.6e-22	30.2
WP_096426458.1\|4119098_4119596_-	DUF2514 domain-containing protein	A0A2H4J3Q6	uncultured_Caudovirales_phage	1.1e-34	56.4
WP_096426459.1\|4119592_4120024_-	lysozyme	A0A0S2SYD0	Pseudomonas_phage	4.6e-53	75.7
WP_020190400.1\|4120114_4121374_-	group II intron reverse transcriptase/maturase	NA	NA	NA	NA
WP_172901747.1\|4121965_4122136_-	hypothetical protein	NA	NA	NA	NA
WP_096426460.1\|4122119_4122500_-	hypothetical protein	NA	NA	NA	NA
WP_096426461.1\|4122496_4131037_-\|tail	phage tail protein	A0A2H4J8Z6	uncultured_Caudovirales_phage	0.0e+00	66.0
WP_096426462.1\|4131093_4131681_-\|tail	tail assembly protein	A0A2H4J1H0	uncultured_Caudovirales_phage	2.1e-72	72.3
WP_096426463.1\|4131731_4132076_-	hypothetical protein	NA	NA	NA	NA
WP_096426464.1\|4132106_4132862_-	C40 family peptidase	A0A2H4J1J7	uncultured_Caudovirales_phage	2.6e-120	76.9
WP_096426465.1\|4132864_4133614_-\|tail	phage minor tail protein L	A0A0S2SY57	Pseudomonas_phage	1.3e-122	78.7
WP_096426466.1\|4133610_4133949_-\|tail	phage tail protein	A0A1S5R1J0	Pseudomonas_phage	8.7e-15	37.5
WP_096426467.1\|4133948_4137239_-\|tail	phage tail tape measure protein	A0A2D1GNQ1	Pseudomonas_phage	2.4e-69	32.9
WP_070086811.1\|4137284_4137521_-	hypothetical protein	NA	NA	NA	NA
WP_020190152.1\|4137517_4137862_-	hypothetical protein	NA	NA	NA	NA
WP_096426468.1\|4137902_4138403_-	hypothetical protein	A0A2D1GNF2	Pseudomonas_phage	7.7e-68	75.8
WP_086975829.1\|4138458_4138845_-	DUF3168 domain-containing protein	A0A2D1GNT4	Pseudomonas_phage	6.8e-56	84.4
WP_086975827.1\|4138837_4139413_-	HK97 gp10 family phage protein	A0A2D1GNN2	Pseudomonas_phage	6.2e-53	56.3
WP_020190149.1\|4139416_4139587_-	hypothetical protein	A0A2D1GNQ5	Pseudomonas_phage	1.4e-05	53.7
WP_080574875.1\|4139595_4139922_-\|head,tail	head-tail adaptor protein	A0A2H4JC00	uncultured_Caudovirales_phage	1.1e-19	49.1
WP_096426469.1\|4139918_4140260_-\|head,tail	phage gp6-like head-tail connector protein	A0A2H4J8C5	uncultured_Caudovirales_phage	2.0e-06	33.0
WP_157754415.1\|4140264_4140810_-	hypothetical protein	NA	NA	NA	NA
WP_016485706.1\|4140858_4142040_-\|capsid	phage major capsid protein	A0A218MGA4	Pseudomonas_phage	3.7e-121	60.9
WP_096426470.1\|4142042_4142900_-\|protease	Clp protease ClpP	A0A1V0E8B8	Vibrio_phage	5.5e-98	64.3
WP_096426471.1\|4142916_4144215_-\|portal	phage portal protein	H2BDA8	Pseudomonas_virus	4.3e-187	72.4
WP_096426473.1\|4144365_4146045_-\|terminase	terminase large subunit	S4TSQ6	Salmonella_phage	7.5e-192	60.2
WP_027609640.1\|4146048_4146525_-\|terminase	terminase small subunit	A0A2H4J8R0	uncultured_Caudovirales_phage	3.9e-21	46.5
WP_096426474.1\|4146764_4147100_-	HNH endonuclease	A8B112	Xanthomonas_virus	5.2e-20	47.3
WP_172901748.1\|4147099_4147258_-	hypothetical protein	NA	NA	NA	NA
WP_096426476.1\|4147494_4147911_-	hypothetical protein	NA	NA	NA	NA
WP_096426477.1\|4147938_4148157_-	hypothetical protein	NA	NA	NA	NA
WP_096426478.1\|4148153_4148345_-	hypothetical protein	NA	NA	NA	NA
WP_096426479.1\|4148341_4148671_-	hypothetical protein	A0A059VJW1	Pseudomonas_phage	3.6e-13	56.7
WP_054912146.1\|4148677_4149040_-	hypothetical protein	A0A059VK40	Pseudomonas_phage	4.3e-36	80.6
WP_096426480.1\|4149039_4149237_-	hypothetical protein	NA	NA	NA	NA
WP_096426481.1\|4149603_4150290_-	hypothetical protein	A0A1B0VMF2	Pseudomonas_phage	1.0e-78	63.6
WP_157754417.1\|4150395_4150800_-	hypothetical protein	NA	NA	NA	NA
WP_096426483.1\|4150796_4152086_-\|integrase	site-specific integrase	A0A2D1GND4	Pseudomonas_phage	3.0e-116	51.8
WP_096426484.1\|4152082_4152511_-	VRR-NUC domain-containing protein	A0A2D1GNH3	Pseudomonas_phage	1.2e-48	68.5
WP_096426485.1\|4152507_4152756_-	hypothetical protein	NA	NA	NA	NA
WP_096426486.1\|4152752_4153052_-	DUF1364 domain-containing protein	A0A220NQY2	Salmonella_phage	1.9e-29	66.0
WP_096426487.1\|4153054_4153849_-	ATP-binding protein	A0A2H4J3E5	uncultured_Caudovirales_phage	4.6e-75	54.5
WP_096426488.1\|4153838_4154705_-	replication protein	W6MYB0	Pseudomonas_phage	8.2e-41	40.7
WP_096426489.1\|4154843_4155068_-	helix-turn-helix transcriptional regulator	A0A127KNT2	Pseudomonas_phage	1.8e-08	46.2
WP_096426490.1\|4155172_4155979_+	helix-turn-helix domain-containing protein	A0A2D1GNH0	Pseudomonas_phage	1.6e-70	52.9
WP_096426492.1\|4156338_4158339_+	ATP-binding protein	NA	NA	NA	NA
WP_096426493.1\|4158558_4159107_+	hypothetical protein	NA	NA	NA	NA
WP_096426495.1\|4159533_4159860_-	DUF1654 domain-containing protein	A0A2D1GND3	Pseudomonas_phage	1.0e-28	65.7
WP_096426496.1\|4160854_4161238_+	helix-turn-helix transcriptional regulator	A0A2H4JA92	uncultured_Caudovirales_phage	8.3e-22	52.9
WP_096426497.1\|4161255_4161588_+	hypothetical protein	NA	NA	NA	NA
WP_096426498.1\|4161584_4162082_+	single-stranded DNA-binding protein	I3PGW4	Xanthomonas_phage	3.1e-45	69.2
WP_172901749.1\|4162084_4162246_+	hypothetical protein	NA	NA	NA	NA
WP_096426499.1\|4162334_4162682_+	hypothetical protein	I3PUY8	Vibrio_phage	8.1e-24	50.0
WP_096426500.1\|4162708_4163524_+	DUF2303 family protein	A0A0P0ZBZ4	Stx2-converting_phage	1.1e-47	41.4
WP_096426501.1\|4164026_4164788_+	hypothetical protein	A0A2H4J7T1	uncultured_Caudovirales_phage	1.6e-133	91.3
WP_096426503.1\|4165144_4167037_+	DNA cytosine methyltransferase	H9C171	Pectobacterium_phage	5.3e-101	36.0
WP_096426505.1\|4168538_4169198_+	hypothetical protein	H2BDG4	Pseudomonas_virus	6.4e-38	42.7
WP_096426506.1\|4169194_4169461_+	hypothetical protein	A0A2H4J399	uncultured_Caudovirales_phage	1.6e-27	72.7
WP_096426507.1\|4169457_4169757_+	hypothetical protein	NA	NA	NA	NA
WP_096426508.1\|4169753_4170137_+	DUF2591 domain-containing protein	A0A125RNP6	Pseudomonas_phage	4.0e-16	41.7
WP_096426509.1\|4170133_4170328_+	hypothetical protein	NA	NA	NA	NA
WP_096426510.1\|4170344_4170530_-	hypothetical protein	NA	NA	NA	NA
WP_096426981.1\|4170620_4171523_+	phosphohydrolase	A0A1V0E8C5	Vibrio_phage	5.3e-67	45.8
WP_096426511.1\|4171576_4172074_+	hypothetical protein	A0A1B0VM52	Pseudomonas_phage	3.2e-34	59.8
WP_085614919.1\|4172112_4172358_+	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_096426512.1\|4172359_4173421_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	1.5e-105	58.8
WP_096426982.1\|4174606_4176013_+\|integrase	site-specific integrase	NA	NA	NA	NA
4177608:4177622	attR	NA	NA	NA	NA

DBSCAN-SWA_7

4248638 : 4259614

uncultured_Caudovirales_phage(77.78%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_063422635.1\|4248638_4249103_-	hypothetical protein	A0A2H4J163	uncultured_Caudovirales_phage	6.5e-29	41.2
WP_063422634.1\|4249151_4249547_-	hypothetical protein	NA	NA	NA	NA
WP_063422633.1\|4249675_4250137_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003251184.1\|4250815_4251487_+	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	2.1e-105	91.0
WP_023047266.1\|4251808_4253188_+	uracil-xanthine permease	H9YQ34	environmental_Halophage	1.6e-27	51.1
WP_016488109.1\|4253363_4253756_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	2.5e-53	79.1
WP_096426520.1\|4253757_4254117_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.6e-35	64.2
WP_016488111.1\|4254116_4254413_+	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	2.8e-25	61.6
WP_016488112.1\|4254409_4254745_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	1.3e-42	76.6
WP_024717418.1\|4254756_4255758_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	2.1e-157	82.0
WP_096426521.1\|4255852_4256812_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_016488115.1\|4256941_4258333_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_016488116.1\|4258333_4259614_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	5.9e-96	54.1

DBSCAN-SWA_8

5699704 : 5707688

uncultured_Caudovirales_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_053870531.1\|5699704_5701192_+	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	1.1e-266	98.6
WP_024947943.1\|5701203_5702055_+	universal stress protein	A0A2H4J154	uncultured_Caudovirales_phage	4.6e-145	94.7
WP_024947944.1\|5702146_5702680_+	NUDIX domain-containing protein	A0A2H4J8B3	uncultured_Caudovirales_phage	1.4e-67	96.2
WP_009684098.1\|5702713_5704249_-\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	1.6e-116	45.9
WP_009684097.1\|5704310_5704646_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_009684096.1\|5704642_5704975_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_096426773.1\|5705238_5705568_+	hypothetical protein	NA	NA	NA	NA
WP_096426774.1\|5705639_5706608_+	DUF932 domain-containing protein	A0A0H4INH5	Stenotrophomonas_phage	1.7e-63	44.4
WP_096426775.1\|5706683_5707688_+	YqaJ viral recombinase family protein	A0A139ZPJ9	Marinitoga_camini_virus	3.1e-44	45.4

DBSCAN-SWA_9

5928830 : 5939128

Agrobacterium_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016489424.1\|5928830_5930036_+	nicotinate phosphoribosyltransferase	A0A2L0UZQ6	Agrobacterium_phage	3.0e-49	35.6
WP_016489425.1\|5930039_5930867_+	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	7.8e-49	47.0
WP_024717363.1\|5930981_5931431_-	azurin	NA	NA	NA	NA
WP_096426843.1\|5931780_5932368_+	TIGR00730 family Rossman fold protein	A0A2I2L3F0	Orpheovirus	3.1e-07	24.4
WP_096426844.1\|5932496_5934797_-	YgiQ family radical SAM protein	M1QSD9	Pseudomonas_phage	7.5e-134	94.6
WP_096426845.1\|5935954_5937559_+	ABC transporter ATP-binding protein	W5SAS9	Pithovirus	3.0e-12	29.7
WP_023046912.1\|5937730_5939128_-	replicative DNA helicase	A0A077SK18	Escherichia_phage	2.9e-141	57.3

DBSCAN-SWA_10

6529410 : 6538490

uncultured_Caudovirales_phage(75.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016489886.1\|6529410_6530595_-	class I SAM-dependent methyltransferase	A0A2I2L5L3	Orpheovirus	4.9e-36	32.2
WP_016489887.1\|6530803_6532204_+	dihydrolipoyl dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	3.2e-47	29.0
WP_023048556.1\|6532820_6533270_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_049695271.1\|6533447_6533804_+	metalloregulator ArsR/SmtB family transcription factor	A0A2H4J145	uncultured_Caudovirales_phage	7.0e-39	65.8
WP_049695270.1\|6533833_6535117_+	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	5.2e-201	85.2
WP_023048558.1\|6535131_6535602_+	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	2.1e-67	82.7
WP_023048559.1\|6535625_6536339_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	1.8e-118	89.5
WP_080992800.1\|6536343_6536847_+	dual specificity protein phosphatase family protein	NA	NA	NA	NA
WP_023048561.1\|6536872_6537955_+	NAD(P)/FAD-dependent oxidoreductase	A0A2H4J2Q2	uncultured_Caudovirales_phage	5.3e-106	66.1
WP_023048562.1\|6537947_6538490_+	N-acetyltransferase	A0A2H4J136	uncultured_Caudovirales_phage	5.1e-57	68.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_AP015030

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_AP015030_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP015030_1

113395-113607

TypeIV-A

Consensus_repeat	Method
CCGCTCACCCCCGCGCACGCGGGAAATAC	CRISPRCasFinder

3 spacers

csf3gr5,csf2gr7,csf1gr8,csf5gr6,DinG

The CRISPR arrays of NZ_AP015030_1

>merge|NZ_AP015030|1|113395-113607|CRISPRCasFinder
CCGCTCACCCCCGCGCACGCGGGAAATACTTCGCGCTTGCTCATTTCTCATCCCCACAGCCCCGCTCACCCTCGCGCACGCGGGAAACACTGCGGCCTCTGCTGAAAGCGAGCTGACGTGTACCGCTCACCCCCGCGCACGCGGGAAATACAACCGTCAATACCCCTTCAAATCCCCAAAATACCGTTCACCCCCGCTTGCGCAGGGAATACG

>NZ_AP015030|1|1|113395-113607|CRISPRCasFinder
CCGCTCACCCCCGCGCACGCGGGAAATAC	TTCGCGCTTGCTCATTTCTCATCCCCACAGCC
CCGCTCACCCTCGCGCACGCGGGAAACAC	TGCGGCCTCTGCTGAAAGCGAGCTGACGTGTA
CCGCTCACCCCCGCGCACGCGGGAAATAC	AACCGTCAATACCCCTTCAAATCCCCAAAATA
CCGTTCACCCCCGCTTGCGCAGGGAATACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP015030.1\|WP_152512567.1\|117447_119700_+\|hypothetical-protein	DinG	cd09708_DinG_CAS-IV-A	gnl\|CDD\|274436
NZ_AP015030.1\|WP_096427025.1\|116059_116782_-\|hypothetical-protein	csf1gr8	cd09705_csf1gr8_CAS-IV-A	gnl\|CDD\|187836
NZ_AP015030.1\|WP_080651920.1\|112415_112601_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP015030.1\|WP_020308261.1\|111950_112313_-\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|320084
NZ_AP015030.1\|WP_020308254.1\|120144_120522_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP015030.1\|WP_042920902.1\|105953_106238_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP015030.1\|WP_096427023.1\|108379_109471_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|272946
NZ_AP015030.1\|WP_096427024.1\|111084_111384_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP015030.1\|WP_020308256.1\|116765_117476_-\|hypothetical-protein	csf5gr6	mkCas0159_csf5gr6_CAS-IV-A	unknown
NZ_AP015030.1\|WP_096427022.1\|107975_108329_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP015030.1\|WP_020308265.1\|109621_110665_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP015030.1\|WP_096427026.1\|121161_121896_-\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350235
NZ_AP015030.1\|WP_129591735.1\|122348_122594_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP015030.1\|WP_020308259.1\|114333_115002_-\|hypothetical-protein	csf3gr5	cd09707_csf3gr5_CAS-IV-A	gnl\|CDD\|187838
NZ_AP015030.1\|WP_020308260.1\|112905_113253_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP015030.1\|WP_042920935.1\|121911_122220_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP015030.1\|WP_020308258.1\|115001_116045_-\|type-IV-CRISPR-associated-protein-Csf2	csf2gr7	cd09706_csf2gr7_CAS-IV-A	gnl\|CDD\|274435
NZ_AP015030.1\|WP_096427021.1\|106249_106750_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP015030.1\|WP_020308264.1\|110685_110988_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP015030.1\|WP_020308253.1\|120552_121044_-\|DUF2591-family-protein	unknown	unknown	gnl\|CDD\|378491

Protein	Function_ID	Function_description	E-value
NZ_AP015030.1\|WP_096427026.1\|121161_121896_-\|NYN-domain-containing-protein	gnl\|CDD\|350235	cd10911, PIN_LabA, PIN domain of Synechococcus elongatus LabA (low-amplitude and bright) and related proteins. This subfamily contains Synechococcus elongatus PCC 7942 LabA which participates in cyanobacterial circadian timing, it is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system, and appears to be necessary for KaiC-dependent repression of gene expression. This subfamily belongs to the LabA-like domain family which includes the N-terminal domain of limkain b1, a human autoantigen localized to a subset of ABCD3 and PXF marked peroxisomes. Also included in the LabA-like domain family are human ZNF451, uncharacterized Bacillus subtilis YqxD, uncharacterized Escherichia coli YaiI, and the N-terminal domain of a well-conserved group of mainly bacterial proteins with no defined function, which contain a C-terminal LabA_like_C domain. Curiously Pseudomonas putida S16 NicB , which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls into the LabA-like family. The PIN (PilT N terminus) domain belongs to a large nuclease superfamily. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	2.37178e-33
NZ_AP015030.1\|WP_020308259.1\|114333_115002_-\|hypothetical-protein	gnl\|CDD\|187838	cd09707, Csf3_U, CRISPR/Cas system-associated RAMP superfamily protein Csf3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	2.01783e-22
NZ_AP015030.1\|WP_020308253.1\|120552_121044_-\|DUF2591-family-protein	gnl\|CDD\|378491	pfam10765, DUF2591, Protein of unknown function (DUF2591). This bacterial family of proteins has no known function.	0.000740844
NZ_AP015030.1\|WP_020308261.1\|111950_112313_-\|DNA-binding-protein	gnl\|CDD\|320084	cd16170, MvaT_DBD, DNA-binding domain of the bacterial xenogeneic silencer MvaT. MvaT is a xenogeneic silencer conserved in Pseudomonas which assists in distinguishing foreign from self DNA. It prefers binding to flexible DNA segments with multiple TpA steps, and forms nucleoprotein filaments through cooperative polymerization.	2.84418e-17
NZ_AP015030.1\|WP_020308258.1\|115001_116045_-\|type-IV-CRISPR-associated-protein-Csf2	gnl\|CDD\|274435	TIGR03115, cas7_csf2, CRISPR type IV/AFERR-associated protein Csf2. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf2 (CRISPR/cas Subtype as in A. ferrooxidans protein 2), as it lies second closest to the repeats.	1.40911e-31
NZ_AP015030.1\|WP_096427023.1\|108379_109471_-\|hypothetical-protein	gnl\|CDD\|272946	TIGR00180, Probable_chromosome-partitioning_protein_ParB, ParB/RepB/Spo0J family partition protein. This model represents the most well-conserved core of a set of chromosomal and plasmid partition proteins related to ParB, including Spo0J, RepB, and SopB. Spo0J has been shown to bind a specific DNA sequence that, when introduced into a plasmid, can serve as partition site. Study of RepB, which has nicking-closing activity, suggests that it forms a transient protein-DNA covalent intermediate during the strand transfer reaction.	0.000193929
NZ_AP015030.1\|WP_152512567.1\|117447_119700_+\|hypothetical-protein	gnl\|CDD\|274436	TIGR03117, cas_csf4, CRISPR type AFERR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.	5.06807e-72
NZ_AP015030.1\|WP_096427025.1\|116059_116782_-\|hypothetical-protein	gnl\|CDD\|187836	cd09705, Csf1_U, CRISPR/Cas system-associated protein Csf1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein; also known as Csf1 family.	2.64159e-26

>NZ_AP015030.1|WP_020308260.1|112905_113253_-|hypothetical-protein
MHPSIGRLNGGKFYSYLNGYHAEPFVGSLEEVEVAMGLRTQPTPSPAEPAAAKRKCFDVTMRFQYPAWDEVDGIVYRSIEADSKSEANAMAKRMADQDGHLAGGKGRVTFSACEQ
>NZ_AP015030.1|WP_080651920.1|112415_112601_-|hypothetical-protein
MHPTVADGLYWYFANGEPEPRPVMINKERWGQSMKSFNGAQQSWLREGEYLIGPQPAPQFQ
>NZ_AP015030.1|WP_020308261.1|111950_112313_-|DNA-binding-protein
MSLINEYRNTEEAIKELQERLQSLSNDDRLKKELEFDQKLRALMGEYNKSLRDVIALLDPNAGKQVAKQAGTGKRSARAIKVYKNPNTGEVVETKGGNQKTLKAWKEKWGAEAVQSWLQK
>NZ_AP015030.1|WP_096427024.1|111084_111384_-|hypothetical-protein
MPQLNPLSFRINFNGTPLIADPLDTESLYDAMARTIEKHAGSLVAEWGRCKKAGEHYRYPVLLSNGERGNVFIEGKPDGTETLPPRRSCTSKARGCTCQ
>NZ_AP015030.1|WP_020308264.1|110685_110988_-|hypothetical-protein
MLTVAQILAGAPLDAFIRHAGVHDLASFGQWLEMRRAESVRLQARFALEKRDDDELYEWVIAHAAAFSEVAINFRAASNEGDQISHALSLEPATTSDTIQ
>NZ_AP015030.1|WP_020308265.1|109621_110665_-|hypothetical-protein
MQTTLSDQINEAAERLRQSASMGTAAVSVSAADLQLLLSAMSQPENPGSIASCDDAFAEHYKADPGDPSVGADLEVWRNSWAQAQKACLIEVGHQVGLLGQVLGDCIVEAGIIRPGVGLTGPELLMFANDLLTYIKQQQQMEAAANAVFTFMLKYPCESPLEFLRCWNEGNFDALRAEWPEAPDEIYIGPDQFHPKTIGFDAYSTADAKSLTSVRLLSQCRDNLNSDAGNIDALIAEVDAYLAGQPSPTNSTDATGGIQDELDVDGAKAQYKAAAQALIRATQRQYPINSTVEAKVGGHLIRGTVIRHNDSWWCDPGEFTIRNIATGKERKITHSHVKEARESHAHV
>NZ_AP015030.1|WP_096427023.1|108379_109471_-|hypothetical-protein
MSMFEQTQLAIESFDLTLVPGSVKKLMAGIKAVYEGQAKEQEKIKGAGGSSDLWKVPVNELKVLEGFNVRLPGPDLDEHLDFLTGSILEEGFFQHRPLAALVLEIDGELGLYVFDGHCRLTSTKRAIAEGAPIDLVPVVVQDGRNVDLDDLYVQMHRLNKGKELSPFELGLLCKRLAKNNHSDDVIAKRMGIKPQYVDGLLRLVNAPKPLVGAVLSNELAASEAIKMIRSHGNGGVVQELESRRARALAEMQSKAPATAQEPAQESGSEQQEQAPATTAPVRPRLTARHASDANVKKVVRKHGLELFKTTRAIKEDPAYASLAEETRQKLDELLAQLEEAEKADTLPAQTEEDTTEGGEQAAA
>NZ_AP015030.1|WP_096427022.1|107975_108329_-|hypothetical-protein
MLIDLRKVAPGDLPNEVFDELTAGNNYGPEMVCALRDHLVNGMDVKEAVKLHGVHAHKLKMRLDKLKDDIERIGRINALLHPDQAQVDLIFSLSSKLAAAVEGLRSNRANDTSASDD
>NZ_AP015030.1|WP_096427021.1|106249_106750_-|hypothetical-protein
MTIKQSRKTAREFVEKHVAALSADVLIWRKSASLPSESPVHELASLCVPFAADGDKYIEAERLIVQQALEATAASGAAASDTETHQQGSAALNEAAYRRLLPKLVELAEQIDNMSEDEYGNWVDALPEEEFFEYIGVAHNEQTFKSALAAARMLISKPSAVVSAGQ
>NZ_AP015030.1|WP_042920902.1|105953_106238_-|hypothetical-protein
MPTPDWRYEKSSNTVKALCRLLRTELTDEQRGEFGLALHDSLKLMCDAITAGAPERGDLWTPSMVRIFFEQPEHCERWLELIDEPDFKPDYYLT
>NZ_AP015030.1|WP_020308259.1|114333_115002_-|hypothetical-protein
MDFLKVTINLGSPMVEPGDLFHLDALLGALRVSEVRAELGDGINPRDHHYDLPLEQYRSRSGQWVFKASAFHINKGTASQNWMQTSRINTAEAARHRSEGFLLLRAAKPNPAGGPFKNSLYHYPLVWATLTAYCVGDQARIADLLSQCRQIGGRRGVGCGRVAGFSVEVVPEVECTWALRAMPDDSEQSILCGEYALAMSALQSPYWDRSLHKPALVPTSLA
>NZ_AP015030.1|WP_020308258.1|115001_116045_-|type-IV-CRISPR-associated-protein-Csf2
MQIEVLIRNITPIFSAAPGSYYVSLDGTINPPQGASRFPLTRARTMTVVAETGDGVAKGVPLPIVPGNTMRNLLRRTMLKDVIEPALRDKSAQLSIGAYATAYAGNSSGNPDGVPSSFDEIVTMRAHPFLGLFGGGPRMLQGRLMVDSLYPIHQFSQRIIGSDYINDSIKGGITEIVWTRRNDPILQLGSPDDAAVIEGGAQAANDWITSLLATTKAKKGKAAKQADEAAESSDDNGRGLKAFNAHEVVIAGVKWLWRINVDRPSEAQIGLILLALNKLANQRIAGGHAKDYGRFVIEDVILDGESVWTPSGVSGQATEQFFDAIAEALDGMTSSEFEQFAASAKEA
>NZ_AP015030.1|WP_096427025.1|116059_116782_-|hypothetical-protein
MRYPSDVVDQVFKLPPDKGLLTWDNDPVACSHCARPIEKGDLYSPSSVGAFFSDTRNLASTSRSICWRCLILRKKQMLNGLSYALITQDGVFQISKDTNKAWLFTTPPPPPFFVMHSSSTMQHLCWRTPVTLDNRRIKVRYGNNLFVVRPEAIREALEIADRMNEGQKKWQAPIFLDRKAADSGHGALTKAGREQLSAADQELLLNITPGERWALAYIMHSKRPQPEEPECITSKILEKL
>NZ_AP015030.1|WP_020308256.1|116765_117476_-|hypothetical-protein
MFVTQVIFNMGERAYPDRARAMVAELMDGVQPGLVATLMNYIPGTSTSRTEFPTVQFGGASDGFCLLGFGDGGGAIIRDAVPLIHAALARRMPDRIIQVEHKEHSLSAEARPYVLSYTVPRMVVQKKQRHAERLLHEAEGKAHLEGLFLRSLQRQAAAVGLPLPENLEVEFKGAVGNFAAKHNPNSKVAYRGLRGAVFDVNARLGGIWTAGFMLSKGYGQFNATHQLSGAVNALSE
>NZ_AP015030.1|WP_152512567.1|117447_119700_+|hypothetical-protein
MLKITCVTNIGDSLPVLLRAIFITCFEVGSSEVEVIRIGAIAPPEKQRSQWARDKLAEAIELKLEPIAVPLHEVESFTSTMNPALASQLKRMAKDCNIPLARLTAGLLAALRRHYEAMEVAPVPVNPETGIPGQSEVREVLLPLLEQSASAIEKGKIVFAEAATGTGKGRMIASLAANAAAKGDTVVISAPLAVTWQLIDALKGIREAQVAGITLSLGRPNFVSPGRVLEWAVDNERVELAAWVEQGGKPLSARTKGASEVIEHELCWMLEDALVLAEDLPIDAIMLSPDDDDDCPAQRLYKSMRNNHTEAGIVLCSHYMLAAHVRFMQLRGLAGEDDPAEPAQSFSLPQAIDTLIVDEAHLLEQAFAAIYSHTLRLRPLVRAIESHVGRGKTPVVNALNALAQQITRTVQQGKDGGARVCQLDEVPSLEPALRDALTALESVKLKSLDGGAKAVIRVAIRALKDALSGRSRLRMELTPVRHFPMLVSGRANLQKALLSLWDAVAGAALVSATIYASDDHAVLTRWKLEVPPARAIYLPPVHPAWTTEPVLLHPDRNAIEPNDSPEWADETAGLIAKVAERAVGGTLVLCTSYQNAELLQGRLLAVLGERLIVQTKVSSASMCVAQYKALYRAGARPVWLGLGAAWTGIDLSDELATDPADDAMLSDLVITRLPVGLNRSLTHERRVAIAGFKIVTLEAVWQLRQGLGRLVRRPGVKNKNLWVLDSRIGGNAPWVTPYRRLLSRYQAAPV
>NZ_AP015030.1|WP_020308254.1|120144_120522_-|hypothetical-protein
MSADLLTRFKQYRLSADLERIRLSAVPDELQPLVKAYREALNRQLADPENESWGSLGPNERHNALQEVYLAFAPKFDRPKGNCPRCGGTGHILAYSHVRGGVCCNVEVAVASHLADRTRICEVKM
>NZ_AP015030.1|WP_020308253.1|120552_121044_-|DUF2591-family-protein
MNTTTSRRKQSAPVAVVVNTLTTIQIDWLIAQQEGVAVIFDGAHVRYALSDENELGAIYSPSTDPALGHPLLEREKIQFRHIDCEGHSHHGLWLAQDCRFRATGRSVEWREYGCSYPEQDFGYLSGPTMMIAGLRFIIAKALAGKTKNPKVQVPGFLCNVKAA
>NZ_AP015030.1|WP_096427026.1|121161_121896_-|NYN-domain-containing-protein
MRTGIYIDFDNIASNGLGSMVYPALRKHYEGCGRVTQLHAYLSYDEGAESSNERFAAWRRGCRARMEQAGFMLHLKTPKSYQGPDGEVTTKANVDVDLTVDVLLHSERLDRVVLMSGDGDFLRLVQALQDKGIWVDVAAYQGVSGELARACNQLTNPLLIPGVHYSPEYSFKRVFRVTGFNMREMAMSIEYLRDSPTTLSPDDPAWVREEIRASREMYESRRFTPGRILGWTGADGLSAYHDIA
>NZ_AP015030.1|WP_042920935.1|121911_122220_-|hypothetical-protein
MSTPPFKATITITIEGPSPDEFGLALSNATDSLGFGSAGNGCTPNGTAYRYEIDSNLPSEPMTLDRLLKFMDDNMDNEDDRQLLRDTWGTDHLKDPNSPDRS
>NZ_AP015030.1|WP_129591735.1|122348_122594_-|hypothetical-protein
MIPKSLGWLGKQVRSADGRLGRITNEFVGLGFVTLTLTPEKGADEVVTLLPDGSASGSSGWQWLCDNFTGGPRWLALGNQH

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Crispr_ID: NZ_AP015030_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP015030_2

113760-114278

TypeIV-A

Consensus_repeat	Method
CCGCTCACCCCCGCGCACGCGGGAAATAC	PILER-CR
CCGCTCACCCCCGCGCACGCGGGAAATAC	CRISPRCasFinder
CCGCTCACCCCCGCGCACGCGGGAAATAC	CRT

8 spacers

csf3gr5,csf2gr7,csf1gr8,csf5gr6,DinG

The CRISPR arrays of NZ_AP015030_2

>merge|NZ_AP015030|2|113760-114278|PILER-CR,CRISPRCasFinder,CRT
CCGCTTACCCCCGCGCACGCGGGAAATACGGATTCCGGTGCCGGTGGGAATCCAGGGAACCCCGCTCACCCCCGCGCACGCGGGAAATACCGGGGCAGGTTCATTCTGTCACCCACTGGCTGCCGCTCACCCCCGCGCACGCGGGAAATACTGTTTCATGACCGATCTCCCTTAGTTCTCAAACCGCTCACCCCCGCGCACGCGGGAAATACGCCCTAGGCAGCCTCGCGTGCAGCCAGTCCAGTCCGCTCACCCCCGCGCACGCGGGAAATACCGGGCACTGCTCACCCGCTTGGGCGGTACTTACCGCTCACCCCCGCGCACGCGGGAAATACGCTCTTGCGCATAACAGAATGCTCACGCCGGAGCCGCTCACCCCCGCGCACGCGGGAAATACATCTGGTAATCATGGGTATTTCAAGGGGCACTCCGCTCACCCCCGCGCACGCGGGAAATACGGATTAATCCCCCTGTTTTGCTCGATAGTCACCCGCTCACCCCCGCGCACGCGGGAAATAC

>NZ_AP015030|2|1|113760-114278|PILER-CR
CCGCTTACCCCCGCGCACGCGGGAAATAC	GGATTCCGGTGCCGGTGGGAATCCAGGGAACC
CCGCTCACCCCCGCGCACGCGGGAAATAC	CGGGGCAGGTTCATTCTGTCACCCACTGGCTG
CCGCTCACCCCCGCGCACGCGGGAAATAC	TGTTTCATGACCGATCTCCCTTAGTTCTCAAA
CCGCTCACCCCCGCGCACGCGGGAAATAC	GCCCTAGGCAGCCTCGCGTGCAGCCAGTCCAGT
CCGCTCACCCCCGCGCACGCGGGAAATAC	CGGGCACTGCTCACCCGCTTGGGCGGTACTTA
CCGCTCACCCCCGCGCACGCGGGAAATAC	GCTCTTGCGCATAACAGAATGCTCACGCCGGAG
CCGCTCACCCCCGCGCACGCGGGAAATAC	ATCTGGTAATCATGGGTATTTCAAGGGGCACT
CCGCTCACCCCCGCGCACGCGGGAAATAC	GGATTAATCCCCCTGTTTTGCTCGATAGTCAC
CCGCTCACCCCCGCGCACGCGGGAAATAC

>NZ_AP015030|2|2|113760-114278|CRISPRCasFinder
CCGCTTACCCCCGCGCACGCGGGAAATAC	GGATTCCGGTGCCGGTGGGAATCCAGGGAACC
CCGCTCACCCCCGCGCACGCGGGAAATAC	CGGGGCAGGTTCATTCTGTCACCCACTGGCTG
CCGCTCACCCCCGCGCACGCGGGAAATAC	TGTTTCATGACCGATCTCCCTTAGTTCTCAAA
CCGCTCACCCCCGCGCACGCGGGAAATAC	GCCCTAGGCAGCCTCGCGTGCAGCCAGTCCAGT
CCGCTCACCCCCGCGCACGCGGGAAATAC	CGGGCACTGCTCACCCGCTTGGGCGGTACTTA
CCGCTCACCCCCGCGCACGCGGGAAATAC	GCTCTTGCGCATAACAGAATGCTCACGCCGGAG
CCGCTCACCCCCGCGCACGCGGGAAATAC	ATCTGGTAATCATGGGTATTTCAAGGGGCACT
CCGCTCACCCCCGCGCACGCGGGAAATAC	GGATTAATCCCCCTGTTTTGCTCGATAGTCAC
CCGCTCACCCCCGCGCACGCGGGAAATAC

>NZ_AP015030|2|1|113760-114278|CRT
CCGCTTACCCCCGCGCACGCGGGAAATAC	GGATTCCGGTGCCGGTGGGAATCCAGGGAACC
CCGCTCACCCCCGCGCACGCGGGAAATAC	CGGGGCAGGTTCATTCTGTCACCCACTGGCTG
CCGCTCACCCCCGCGCACGCGGGAAATAC	TGTTTCATGACCGATCTCCCTTAGTTCTCAAA
CCGCTCACCCCCGCGCACGCGGGAAATAC	GCCCTAGGCAGCCTCGCGTGCAGCCAGTCCAGT
CCGCTCACCCCCGCGCACGCGGGAAATAC	CGGGCACTGCTCACCCGCTTGGGCGGTACTTA
CCGCTCACCCCCGCGCACGCGGGAAATAC	GCTCTTGCGCATAACAGAATGCTCACGCCGGAG
CCGCTCACCCCCGCGCACGCGGGAAATAC	ATCTGGTAATCATGGGTATTTCAAGGGGCACT
CCGCTCACCCCCGCGCACGCGGGAAATAC	GGATTAATCCCCCTGTTTTGCTCGATAGTCAC
CCGCTCACCCCCGCGCACGCGGGAAATAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP015030.1\|WP_152512567.1\|117447_119700_+\|hypothetical-protein	DinG	cd09708_DinG_CAS-IV-A	gnl\|CDD\|274436
NZ_AP015030.1\|WP_096427025.1\|116059_116782_-\|hypothetical-protein	csf1gr8	cd09705_csf1gr8_CAS-IV-A	gnl\|CDD\|187836
NZ_AP015030.1\|WP_080651920.1\|112415_112601_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP015030.1\|WP_020308261.1\|111950_112313_-\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|320084
NZ_AP015030.1\|WP_020308254.1\|120144_120522_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP015030.1\|WP_042920902.1\|105953_106238_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP015030.1\|WP_096427023.1\|108379_109471_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|272946
NZ_AP015030.1\|WP_096427024.1\|111084_111384_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP015030.1\|WP_020308256.1\|116765_117476_-\|hypothetical-protein	csf5gr6	mkCas0159_csf5gr6_CAS-IV-A	unknown
NZ_AP015030.1\|WP_096427022.1\|107975_108329_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP015030.1\|WP_020308265.1\|109621_110665_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP015030.1\|WP_096427026.1\|121161_121896_-\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350235
NZ_AP015030.1\|WP_129591735.1\|122348_122594_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP015030.1\|WP_020308259.1\|114333_115002_-\|hypothetical-protein	csf3gr5	cd09707_csf3gr5_CAS-IV-A	gnl\|CDD\|187838
NZ_AP015030.1\|WP_020308260.1\|112905_113253_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP015030.1\|WP_042920935.1\|121911_122220_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP015030.1\|WP_020308258.1\|115001_116045_-\|type-IV-CRISPR-associated-protein-Csf2	csf2gr7	cd09706_csf2gr7_CAS-IV-A	gnl\|CDD\|274435
NZ_AP015030.1\|WP_096427021.1\|106249_106750_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP015030.1\|WP_020308264.1\|110685_110988_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP015030.1\|WP_020308253.1\|120552_121044_-\|DUF2591-family-protein	unknown	unknown	gnl\|CDD\|378491

Protein	Function_ID	Function_description	E-value
NZ_AP015030.1\|WP_096427026.1\|121161_121896_-\|NYN-domain-containing-protein	gnl\|CDD\|350235	cd10911, PIN_LabA, PIN domain of Synechococcus elongatus LabA (low-amplitude and bright) and related proteins. This subfamily contains Synechococcus elongatus PCC 7942 LabA which participates in cyanobacterial circadian timing, it is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system, and appears to be necessary for KaiC-dependent repression of gene expression. This subfamily belongs to the LabA-like domain family which includes the N-terminal domain of limkain b1, a human autoantigen localized to a subset of ABCD3 and PXF marked peroxisomes. Also included in the LabA-like domain family are human ZNF451, uncharacterized Bacillus subtilis YqxD, uncharacterized Escherichia coli YaiI, and the N-terminal domain of a well-conserved group of mainly bacterial proteins with no defined function, which contain a C-terminal LabA_like_C domain. Curiously Pseudomonas putida S16 NicB , which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls into the LabA-like family. The PIN (PilT N terminus) domain belongs to a large nuclease superfamily. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	2.37178e-33
NZ_AP015030.1\|WP_020308259.1\|114333_115002_-\|hypothetical-protein	gnl\|CDD\|187838	cd09707, Csf3_U, CRISPR/Cas system-associated RAMP superfamily protein Csf3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	2.01783e-22
NZ_AP015030.1\|WP_020308253.1\|120552_121044_-\|DUF2591-family-protein	gnl\|CDD\|378491	pfam10765, DUF2591, Protein of unknown function (DUF2591). This bacterial family of proteins has no known function.	0.000740844
NZ_AP015030.1\|WP_020308261.1\|111950_112313_-\|DNA-binding-protein	gnl\|CDD\|320084	cd16170, MvaT_DBD, DNA-binding domain of the bacterial xenogeneic silencer MvaT. MvaT is a xenogeneic silencer conserved in Pseudomonas which assists in distinguishing foreign from self DNA. It prefers binding to flexible DNA segments with multiple TpA steps, and forms nucleoprotein filaments through cooperative polymerization.	2.84418e-17
NZ_AP015030.1\|WP_020308258.1\|115001_116045_-\|type-IV-CRISPR-associated-protein-Csf2	gnl\|CDD\|274435	TIGR03115, cas7_csf2, CRISPR type IV/AFERR-associated protein Csf2. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf2 (CRISPR/cas Subtype as in A. ferrooxidans protein 2), as it lies second closest to the repeats.	1.40911e-31
NZ_AP015030.1\|WP_096427023.1\|108379_109471_-\|hypothetical-protein	gnl\|CDD\|272946	TIGR00180, Probable_chromosome-partitioning_protein_ParB, ParB/RepB/Spo0J family partition protein. This model represents the most well-conserved core of a set of chromosomal and plasmid partition proteins related to ParB, including Spo0J, RepB, and SopB. Spo0J has been shown to bind a specific DNA sequence that, when introduced into a plasmid, can serve as partition site. Study of RepB, which has nicking-closing activity, suggests that it forms a transient protein-DNA covalent intermediate during the strand transfer reaction.	0.000193929
NZ_AP015030.1\|WP_152512567.1\|117447_119700_+\|hypothetical-protein	gnl\|CDD\|274436	TIGR03117, cas_csf4, CRISPR type AFERR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.	5.06807e-72
NZ_AP015030.1\|WP_096427025.1\|116059_116782_-\|hypothetical-protein	gnl\|CDD\|187836	cd09705, Csf1_U, CRISPR/Cas system-associated protein Csf1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein; also known as Csf1 family.	2.64159e-26

>NZ_AP015030.1|WP_020308260.1|112905_113253_-|hypothetical-protein
MHPSIGRLNGGKFYSYLNGYHAEPFVGSLEEVEVAMGLRTQPTPSPAEPAAAKRKCFDVTMRFQYPAWDEVDGIVYRSIEADSKSEANAMAKRMADQDGHLAGGKGRVTFSACEQ
>NZ_AP015030.1|WP_080651920.1|112415_112601_-|hypothetical-protein
MHPTVADGLYWYFANGEPEPRPVMINKERWGQSMKSFNGAQQSWLREGEYLIGPQPAPQFQ
>NZ_AP015030.1|WP_020308261.1|111950_112313_-|DNA-binding-protein
MSLINEYRNTEEAIKELQERLQSLSNDDRLKKELEFDQKLRALMGEYNKSLRDVIALLDPNAGKQVAKQAGTGKRSARAIKVYKNPNTGEVVETKGGNQKTLKAWKEKWGAEAVQSWLQK
>NZ_AP015030.1|WP_096427024.1|111084_111384_-|hypothetical-protein
MPQLNPLSFRINFNGTPLIADPLDTESLYDAMARTIEKHAGSLVAEWGRCKKAGEHYRYPVLLSNGERGNVFIEGKPDGTETLPPRRSCTSKARGCTCQ
>NZ_AP015030.1|WP_020308264.1|110685_110988_-|hypothetical-protein
MLTVAQILAGAPLDAFIRHAGVHDLASFGQWLEMRRAESVRLQARFALEKRDDDELYEWVIAHAAAFSEVAINFRAASNEGDQISHALSLEPATTSDTIQ
>NZ_AP015030.1|WP_020308265.1|109621_110665_-|hypothetical-protein
MQTTLSDQINEAAERLRQSASMGTAAVSVSAADLQLLLSAMSQPENPGSIASCDDAFAEHYKADPGDPSVGADLEVWRNSWAQAQKACLIEVGHQVGLLGQVLGDCIVEAGIIRPGVGLTGPELLMFANDLLTYIKQQQQMEAAANAVFTFMLKYPCESPLEFLRCWNEGNFDALRAEWPEAPDEIYIGPDQFHPKTIGFDAYSTADAKSLTSVRLLSQCRDNLNSDAGNIDALIAEVDAYLAGQPSPTNSTDATGGIQDELDVDGAKAQYKAAAQALIRATQRQYPINSTVEAKVGGHLIRGTVIRHNDSWWCDPGEFTIRNIATGKERKITHSHVKEARESHAHV
>NZ_AP015030.1|WP_096427023.1|108379_109471_-|hypothetical-protein
MSMFEQTQLAIESFDLTLVPGSVKKLMAGIKAVYEGQAKEQEKIKGAGGSSDLWKVPVNELKVLEGFNVRLPGPDLDEHLDFLTGSILEEGFFQHRPLAALVLEIDGELGLYVFDGHCRLTSTKRAIAEGAPIDLVPVVVQDGRNVDLDDLYVQMHRLNKGKELSPFELGLLCKRLAKNNHSDDVIAKRMGIKPQYVDGLLRLVNAPKPLVGAVLSNELAASEAIKMIRSHGNGGVVQELESRRARALAEMQSKAPATAQEPAQESGSEQQEQAPATTAPVRPRLTARHASDANVKKVVRKHGLELFKTTRAIKEDPAYASLAEETRQKLDELLAQLEEAEKADTLPAQTEEDTTEGGEQAAA
>NZ_AP015030.1|WP_096427022.1|107975_108329_-|hypothetical-protein
MLIDLRKVAPGDLPNEVFDELTAGNNYGPEMVCALRDHLVNGMDVKEAVKLHGVHAHKLKMRLDKLKDDIERIGRINALLHPDQAQVDLIFSLSSKLAAAVEGLRSNRANDTSASDD
>NZ_AP015030.1|WP_096427021.1|106249_106750_-|hypothetical-protein
MTIKQSRKTAREFVEKHVAALSADVLIWRKSASLPSESPVHELASLCVPFAADGDKYIEAERLIVQQALEATAASGAAASDTETHQQGSAALNEAAYRRLLPKLVELAEQIDNMSEDEYGNWVDALPEEEFFEYIGVAHNEQTFKSALAAARMLISKPSAVVSAGQ
>NZ_AP015030.1|WP_042920902.1|105953_106238_-|hypothetical-protein
MPTPDWRYEKSSNTVKALCRLLRTELTDEQRGEFGLALHDSLKLMCDAITAGAPERGDLWTPSMVRIFFEQPEHCERWLELIDEPDFKPDYYLT
>NZ_AP015030.1|WP_020308259.1|114333_115002_-|hypothetical-protein
MDFLKVTINLGSPMVEPGDLFHLDALLGALRVSEVRAELGDGINPRDHHYDLPLEQYRSRSGQWVFKASAFHINKGTASQNWMQTSRINTAEAARHRSEGFLLLRAAKPNPAGGPFKNSLYHYPLVWATLTAYCVGDQARIADLLSQCRQIGGRRGVGCGRVAGFSVEVVPEVECTWALRAMPDDSEQSILCGEYALAMSALQSPYWDRSLHKPALVPTSLA
>NZ_AP015030.1|WP_020308258.1|115001_116045_-|type-IV-CRISPR-associated-protein-Csf2
MQIEVLIRNITPIFSAAPGSYYVSLDGTINPPQGASRFPLTRARTMTVVAETGDGVAKGVPLPIVPGNTMRNLLRRTMLKDVIEPALRDKSAQLSIGAYATAYAGNSSGNPDGVPSSFDEIVTMRAHPFLGLFGGGPRMLQGRLMVDSLYPIHQFSQRIIGSDYINDSIKGGITEIVWTRRNDPILQLGSPDDAAVIEGGAQAANDWITSLLATTKAKKGKAAKQADEAAESSDDNGRGLKAFNAHEVVIAGVKWLWRINVDRPSEAQIGLILLALNKLANQRIAGGHAKDYGRFVIEDVILDGESVWTPSGVSGQATEQFFDAIAEALDGMTSSEFEQFAASAKEA
>NZ_AP015030.1|WP_096427025.1|116059_116782_-|hypothetical-protein
MRYPSDVVDQVFKLPPDKGLLTWDNDPVACSHCARPIEKGDLYSPSSVGAFFSDTRNLASTSRSICWRCLILRKKQMLNGLSYALITQDGVFQISKDTNKAWLFTTPPPPPFFVMHSSSTMQHLCWRTPVTLDNRRIKVRYGNNLFVVRPEAIREALEIADRMNEGQKKWQAPIFLDRKAADSGHGALTKAGREQLSAADQELLLNITPGERWALAYIMHSKRPQPEEPECITSKILEKL
>NZ_AP015030.1|WP_020308256.1|116765_117476_-|hypothetical-protein
MFVTQVIFNMGERAYPDRARAMVAELMDGVQPGLVATLMNYIPGTSTSRTEFPTVQFGGASDGFCLLGFGDGGGAIIRDAVPLIHAALARRMPDRIIQVEHKEHSLSAEARPYVLSYTVPRMVVQKKQRHAERLLHEAEGKAHLEGLFLRSLQRQAAAVGLPLPENLEVEFKGAVGNFAAKHNPNSKVAYRGLRGAVFDVNARLGGIWTAGFMLSKGYGQFNATHQLSGAVNALSE
>NZ_AP015030.1|WP_152512567.1|117447_119700_+|hypothetical-protein
MLKITCVTNIGDSLPVLLRAIFITCFEVGSSEVEVIRIGAIAPPEKQRSQWARDKLAEAIELKLEPIAVPLHEVESFTSTMNPALASQLKRMAKDCNIPLARLTAGLLAALRRHYEAMEVAPVPVNPETGIPGQSEVREVLLPLLEQSASAIEKGKIVFAEAATGTGKGRMIASLAANAAAKGDTVVISAPLAVTWQLIDALKGIREAQVAGITLSLGRPNFVSPGRVLEWAVDNERVELAAWVEQGGKPLSARTKGASEVIEHELCWMLEDALVLAEDLPIDAIMLSPDDDDDCPAQRLYKSMRNNHTEAGIVLCSHYMLAAHVRFMQLRGLAGEDDPAEPAQSFSLPQAIDTLIVDEAHLLEQAFAAIYSHTLRLRPLVRAIESHVGRGKTPVVNALNALAQQITRTVQQGKDGGARVCQLDEVPSLEPALRDALTALESVKLKSLDGGAKAVIRVAIRALKDALSGRSRLRMELTPVRHFPMLVSGRANLQKALLSLWDAVAGAALVSATIYASDDHAVLTRWKLEVPPARAIYLPPVHPAWTTEPVLLHPDRNAIEPNDSPEWADETAGLIAKVAERAVGGTLVLCTSYQNAELLQGRLLAVLGERLIVQTKVSSASMCVAQYKALYRAGARPVWLGLGAAWTGIDLSDELATDPADDAMLSDLVITRLPVGLNRSLTHERRVAIAGFKIVTLEAVWQLRQGLGRLVRRPGVKNKNLWVLDSRIGGNAPWVTPYRRLLSRYQAAPV
>NZ_AP015030.1|WP_020308254.1|120144_120522_-|hypothetical-protein
MSADLLTRFKQYRLSADLERIRLSAVPDELQPLVKAYREALNRQLADPENESWGSLGPNERHNALQEVYLAFAPKFDRPKGNCPRCGGTGHILAYSHVRGGVCCNVEVAVASHLADRTRICEVKM
>NZ_AP015030.1|WP_020308253.1|120552_121044_-|DUF2591-family-protein
MNTTTSRRKQSAPVAVVVNTLTTIQIDWLIAQQEGVAVIFDGAHVRYALSDENELGAIYSPSTDPALGHPLLEREKIQFRHIDCEGHSHHGLWLAQDCRFRATGRSVEWREYGCSYPEQDFGYLSGPTMMIAGLRFIIAKALAGKTKNPKVQVPGFLCNVKAA
>NZ_AP015030.1|WP_096427026.1|121161_121896_-|NYN-domain-containing-protein
MRTGIYIDFDNIASNGLGSMVYPALRKHYEGCGRVTQLHAYLSYDEGAESSNERFAAWRRGCRARMEQAGFMLHLKTPKSYQGPDGEVTTKANVDVDLTVDVLLHSERLDRVVLMSGDGDFLRLVQALQDKGIWVDVAAYQGVSGELARACNQLTNPLLIPGVHYSPEYSFKRVFRVTGFNMREMAMSIEYLRDSPTTLSPDDPAWVREEIRASREMYESRRFTPGRILGWTGADGLSAYHDIA
>NZ_AP015030.1|WP_042920935.1|121911_122220_-|hypothetical-protein
MSTPPFKATITITIEGPSPDEFGLALSNATDSLGFGSAGNGCTPNGTAYRYEIDSNLPSEPMTLDRLLKFMDDNMDNEDDRQLLRDTWGTDHLKDPNSPDRS
>NZ_AP015030.1|WP_129591735.1|122348_122594_-|hypothetical-protein
MIPKSLGWLGKQVRSADGRLGRITNEFVGLGFVTLTLTPEKGADEVVTLLPDGSASGSSGWQWLCDNFTGGPRWLALGNQH

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_AP015030_1	1.1\|113424\|32\|NZ_AP015030\|CRISPRCasFinder	113424-113455	32	NZ_AP015030	Pseudomonas putida strain KF715 plasmid pKF715A, complete sequence	113424-113455	0	1.0
NZ_AP015030_1	1.2\|113485\|32\|NZ_AP015030\|CRISPRCasFinder	113485-113516	32	NZ_AP015030	Pseudomonas putida strain KF715 plasmid pKF715A, complete sequence	113485-113516	0	1.0
NZ_AP015030_1	1.3\|113546\|32\|NZ_AP015030\|CRISPRCasFinder	113546-113577	32	NZ_CP018048	Pseudomonas aeruginosa strain DN1 plasmid unnamed1, complete sequence	38022-38053	0	1.0
NZ_AP015030_1	1.3\|113546\|32\|NZ_AP015030\|CRISPRCasFinder	113546-113577	32	NZ_AP015030	Pseudomonas putida strain KF715 plasmid pKF715A, complete sequence	113546-113577	0	1.0
NZ_AP015030_2	2.1\|113789\|32\|NZ_AP015030\|PILER-CR,CRISPRCasFinder,CRT	113789-113820	32	NZ_AP015030	Pseudomonas putida strain KF715 plasmid pKF715A, complete sequence	113789-113820	0	1.0
NZ_AP015030_2	2.2\|113850\|32\|NZ_AP015030\|PILER-CR,CRISPRCasFinder,CRT	113850-113881	32	NZ_AP015030	Pseudomonas putida strain KF715 plasmid pKF715A, complete sequence	113850-113881	0	1.0
NZ_AP015030_2	2.3\|113911\|32\|NZ_AP015030\|PILER-CR,CRISPRCasFinder,CRT	113911-113942	32	NZ_AP015030	Pseudomonas putida strain KF715 plasmid pKF715A, complete sequence	113911-113942	0	1.0
NZ_AP015030_2	2.4\|113972\|33\|NZ_AP015030\|PILER-CR,CRISPRCasFinder,CRT	113972-114004	33	NZ_AP015030	Pseudomonas putida strain KF715 plasmid pKF715A, complete sequence	113972-114004	0	1.0
NZ_AP015030_2	2.5\|114034\|32\|NZ_AP015030\|PILER-CR,CRISPRCasFinder,CRT	114034-114065	32	NZ_AP015030	Pseudomonas putida strain KF715 plasmid pKF715A, complete sequence	114034-114065	0	1.0
NZ_AP015030_2	2.6\|114095\|33\|NZ_AP015030\|PILER-CR,CRISPRCasFinder,CRT	114095-114127	33	NZ_AP015030	Pseudomonas putida strain KF715 plasmid pKF715A, complete sequence	114095-114127	0	1.0
NZ_AP015030_2	2.7\|114157\|32\|NZ_AP015030\|PILER-CR,CRISPRCasFinder,CRT	114157-114188	32	NZ_AP015030	Pseudomonas putida strain KF715 plasmid pKF715A, complete sequence	114157-114188	0	1.0
NZ_AP015030_2	2.8\|114218\|32\|NZ_AP015030\|PILER-CR,CRISPRCasFinder,CRT	114218-114249	32	NZ_AP015030	Pseudomonas putida strain KF715 plasmid pKF715A, complete sequence	114218-114249	0	1.0
NZ_AP015030_1	1.1\|113424\|32\|NZ_AP015030\|CRISPRCasFinder	113424-113455	32	NZ_CP018048	Pseudomonas aeruginosa strain DN1 plasmid unnamed1, complete sequence	38144-38175	1	0.969
NZ_AP015030_1	1.2\|113485\|32\|NZ_AP015030\|CRISPRCasFinder	113485-113516	32	NZ_CP042557	Acinetobacter baumannii strain E47 plasmid pE47_001, complete sequence	78512-78543	2	0.938
NZ_AP015030_1	1.2\|113485\|32\|NZ_AP015030\|CRISPRCasFinder	113485-113516	32	MN961671	Pseudomonas aeruginosa strain 201330 plasmid p201330-IMP, complete sequence	80030-80061	2	0.938
NZ_AP015030_1	1.2\|113485\|32\|NZ_AP015030\|CRISPRCasFinder	113485-113516	32	NZ_MH547561	Pseudomonas aeruginosa strain PA34 plasmid pMKPA34-2, complete sequence	22232-22263	2	0.938
NZ_AP015030_1	1.2\|113485\|32\|NZ_AP015030\|CRISPRCasFinder	113485-113516	32	CP019195	Salmonella enterica subsp. enterica serovar Senftenberg str. ATCC 43845 plasmid pATCC43845, complete sequence	300500-300531	3	0.906
NZ_AP015030_1	1.2\|113485\|32\|NZ_AP015030\|CRISPRCasFinder	113485-113516	32	NZ_CP026206	Escherichia coli strain ECONIH5 plasmid pECO-cbb3, complete sequence	52232-52263	3	0.906
NZ_AP015030_1	1.2\|113485\|32\|NZ_AP015030\|CRISPRCasFinder	113485-113516	32	NZ_CP026404	Escherichia coli strain ECONIH4 plasmid pECO-6357, complete sequence	126535-126566	3	0.906
NZ_AP015030_1	1.2\|113485\|32\|NZ_AP015030\|CRISPRCasFinder	113485-113516	32	NZ_CP030920	Escherichia coli strain KL53 plasmid pKL53-L, complete sequence	172544-172575	3	0.906
NZ_AP015030_1	1.2\|113485\|32\|NZ_AP015030\|CRISPRCasFinder	113485-113516	32	NZ_CP016838	Salmonella enterica subsp. enterica serovar Senftenberg strain 775W (ATCC 43845) plasmid pSSE-ATCC-43845, complete sequence	186127-186158	3	0.906
NZ_AP015030_2	2.5\|114034\|32\|NZ_AP015030\|PILER-CR,CRISPRCasFinder,CRT	114034-114065	32	NZ_CP019084	Paludisphaera borealis strain PX4 plasmid PALBO2, complete sequence	7487-7518	7	0.781
NZ_AP015030_2	2.7\|114157\|32\|NZ_AP015030\|PILER-CR,CRISPRCasFinder,CRT	114157-114188	32	MT586120	Synechococcus phage S-CAM7 isolate 0809CC03, complete genome	83845-83876	8	0.75
NZ_AP015030_2	2.7\|114157\|32\|NZ_AP015030\|PILER-CR,CRISPRCasFinder,CRT	114157-114188	32	NC_031927	Synechococcus phage S-CAM7 isolate 0910CC49, complete genome	82766-82797	8	0.75
NZ_AP015030_2	2.7\|114157\|32\|NZ_AP015030\|PILER-CR,CRISPRCasFinder,CRT	114157-114188	32	KU686213	Synechococcus phage S-CAM7 isolate 0910SB42, complete genome	84389-84420	8	0.75
NZ_AP015030_2	2.8\|114218\|32\|NZ_AP015030\|PILER-CR,CRISPRCasFinder,CRT	114218-114249	32	NZ_CP048879	Oceanospirillales bacterium S2-4-1H plasmid pA, complete sequence	70886-70917	8	0.75
NZ_AP015030_1	1.2\|113485\|32\|NZ_AP015030\|CRISPRCasFinder	113485-113516	32	NZ_CP050107	Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b1, complete sequence	94550-94581	9	0.719
NZ_AP015030_1	1.2\|113485\|32\|NZ_AP015030\|CRISPRCasFinder	113485-113516	32	NZ_CP050112	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b5, complete sequence	94549-94580	9	0.719
NZ_AP015030_1	1.2\|113485\|32\|NZ_AP015030\|CRISPRCasFinder	113485-113516	32	NZ_CP017243	Rhizobium etli 8C-3 plasmid pRsp8C3b, complete sequence	11539-11570	9	0.719
NZ_AP015030_1	1.1\|113424\|32\|NZ_AP015030\|CRISPRCasFinder	113424-113455	32	NZ_CP031005	Lactobacillus curvatus strain TMW 1.1928 plasmid p-1.1928_2, complete sequence	16349-16380	11	0.656

1. spacer 1.1|113424|32|NZ_AP015030|CRISPRCasFinder matches to NZ_AP015030 (Pseudomonas putida strain KF715 plasmid pKF715A, complete sequence) position: , mismatch: 0, identity: 1.0

ttcgcgcttgctcatttctcatccccacagcc	CRISPR spacer
ttcgcgcttgctcatttctcatccccacagcc	Protospacer
********************************

2. spacer 1.2|113485|32|NZ_AP015030|CRISPRCasFinder matches to NZ_AP015030 (Pseudomonas putida strain KF715 plasmid pKF715A, complete sequence) position: , mismatch: 0, identity: 1.0

tgcggcctctgctgaaagcgagctgacgtgta	CRISPR spacer
tgcggcctctgctgaaagcgagctgacgtgta	Protospacer
********************************

3. spacer 1.3|113546|32|NZ_AP015030|CRISPRCasFinder matches to NZ_CP018048 (Pseudomonas aeruginosa strain DN1 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

aaccgtcaataccccttcaaatccccaaaata	CRISPR spacer
aaccgtcaataccccttcaaatccccaaaata	Protospacer
********************************

4. spacer 1.3|113546|32|NZ_AP015030|CRISPRCasFinder matches to NZ_AP015030 (Pseudomonas putida strain KF715 plasmid pKF715A, complete sequence) position: , mismatch: 0, identity: 1.0

aaccgtcaataccccttcaaatccccaaaata	CRISPR spacer
aaccgtcaataccccttcaaatccccaaaata	Protospacer
********************************

5. spacer 2.1|113789|32|NZ_AP015030|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP015030 (Pseudomonas putida strain KF715 plasmid pKF715A, complete sequence) position: , mismatch: 0, identity: 1.0

ggattccggtgccggtgggaatccagggaacc	CRISPR spacer
ggattccggtgccggtgggaatccagggaacc	Protospacer
********************************

6. spacer 2.2|113850|32|NZ_AP015030|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP015030 (Pseudomonas putida strain KF715 plasmid pKF715A, complete sequence) position: , mismatch: 0, identity: 1.0

cggggcaggttcattctgtcacccactggctg	CRISPR spacer
cggggcaggttcattctgtcacccactggctg	Protospacer
********************************

7. spacer 2.3|113911|32|NZ_AP015030|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP015030 (Pseudomonas putida strain KF715 plasmid pKF715A, complete sequence) position: , mismatch: 0, identity: 1.0

tgtttcatgaccgatctcccttagttctcaaa	CRISPR spacer
tgtttcatgaccgatctcccttagttctcaaa	Protospacer
********************************

8. spacer 2.4|113972|33|NZ_AP015030|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP015030 (Pseudomonas putida strain KF715 plasmid pKF715A, complete sequence) position: , mismatch: 0, identity: 1.0

gccctaggcagcctcgcgtgcagccagtccagt	CRISPR spacer
gccctaggcagcctcgcgtgcagccagtccagt	Protospacer
*********************************

9. spacer 2.5|114034|32|NZ_AP015030|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP015030 (Pseudomonas putida strain KF715 plasmid pKF715A, complete sequence) position: , mismatch: 0, identity: 1.0

cgggcactgctcacccgcttgggcggtactta	CRISPR spacer
cgggcactgctcacccgcttgggcggtactta	Protospacer
********************************

10. spacer 2.6|114095|33|NZ_AP015030|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP015030 (Pseudomonas putida strain KF715 plasmid pKF715A, complete sequence) position: , mismatch: 0, identity: 1.0

gctcttgcgcataacagaatgctcacgccggag	CRISPR spacer
gctcttgcgcataacagaatgctcacgccggag	Protospacer
*********************************

11. spacer 2.7|114157|32|NZ_AP015030|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP015030 (Pseudomonas putida strain KF715 plasmid pKF715A, complete sequence) position: , mismatch: 0, identity: 1.0

atctggtaatcatgggtatttcaaggggcact	CRISPR spacer
atctggtaatcatgggtatttcaaggggcact	Protospacer
********************************

12. spacer 2.8|114218|32|NZ_AP015030|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP015030 (Pseudomonas putida strain KF715 plasmid pKF715A, complete sequence) position: , mismatch: 0, identity: 1.0

ggattaatccccctgttttgctcgatagtcac	CRISPR spacer
ggattaatccccctgttttgctcgatagtcac	Protospacer
********************************

13. spacer 1.1|113424|32|NZ_AP015030|CRISPRCasFinder matches to NZ_CP018048 (Pseudomonas aeruginosa strain DN1 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.969

ttcgcgcttgctcatttctcatccccacagcc	CRISPR spacer
ttcgcgcttgctcatttctcacccccacagcc	Protospacer
*********************.**********

14. spacer 1.2|113485|32|NZ_AP015030|CRISPRCasFinder matches to NZ_CP042557 (Acinetobacter baumannii strain E47 plasmid pE47_001, complete sequence) position: , mismatch: 2, identity: 0.938

tgcggcctctgctgaaagcgagctgacgtgta	CRISPR spacer
tgcggcctctgctgagagcgagctaacgtgta	Protospacer
***************.********.*******

15. spacer 1.2|113485|32|NZ_AP015030|CRISPRCasFinder matches to MN961671 (Pseudomonas aeruginosa strain 201330 plasmid p201330-IMP, complete sequence) position: , mismatch: 2, identity: 0.938

tgcggcctctgctgaaagcgagctgacgtgta	CRISPR spacer
tgcggcctctgctgagagcgagctaacgtgta	Protospacer
***************.********.*******

16. spacer 1.2|113485|32|NZ_AP015030|CRISPRCasFinder matches to NZ_MH547561 (Pseudomonas aeruginosa strain PA34 plasmid pMKPA34-2, complete sequence) position: , mismatch: 2, identity: 0.938

tgcggcctctgctgaaagcgagctgacgtgta	CRISPR spacer
tgcggcctctgctgagagcgagctaacgtgta	Protospacer
***************.********.*******

17. spacer 1.2|113485|32|NZ_AP015030|CRISPRCasFinder matches to CP019195 (Salmonella enterica subsp. enterica serovar Senftenberg str. ATCC 43845 plasmid pATCC43845, complete sequence) position: , mismatch: 3, identity: 0.906

tgcggcctctgctgaaagcgagctgacgtgta	CRISPR spacer
tacggcctctgctgagagcgagctgacatgta	Protospacer
*.*************.***********.****

18. spacer 1.2|113485|32|NZ_AP015030|CRISPRCasFinder matches to NZ_CP026206 (Escherichia coli strain ECONIH5 plasmid pECO-cbb3, complete sequence) position: , mismatch: 3, identity: 0.906

tgcggcctctgctgaaagcgagctgacgtgta	CRISPR spacer
tacggcctctgctgagagcgagctgacatgta	Protospacer
*.*************.***********.****

19. spacer 1.2|113485|32|NZ_AP015030|CRISPRCasFinder matches to NZ_CP026404 (Escherichia coli strain ECONIH4 plasmid pECO-6357, complete sequence) position: , mismatch: 3, identity: 0.906

tgcggcctctgctgaaagcgagctgacgtgta	CRISPR spacer
tacggcctctgctgagagcgagctgacatgta	Protospacer
*.*************.***********.****

20. spacer 1.2|113485|32|NZ_AP015030|CRISPRCasFinder matches to NZ_CP030920 (Escherichia coli strain KL53 plasmid pKL53-L, complete sequence) position: , mismatch: 3, identity: 0.906

tgcggcctctgctgaaagcgagctgacgtgta	CRISPR spacer
tacggcctctgctgagagcgagctgacatgta	Protospacer
*.*************.***********.****

21. spacer 1.2|113485|32|NZ_AP015030|CRISPRCasFinder matches to NZ_CP016838 (Salmonella enterica subsp. enterica serovar Senftenberg strain 775W (ATCC 43845) plasmid pSSE-ATCC-43845, complete sequence) position: , mismatch: 3, identity: 0.906

tgcggcctctgctgaaagcgagctgacgtgta	CRISPR spacer
tacggcctctgctgagagcgagctgacatgta	Protospacer
*.*************.***********.****

22. spacer 2.5|114034|32|NZ_AP015030|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019084 (Paludisphaera borealis strain PX4 plasmid PALBO2, complete sequence) position: , mismatch: 7, identity: 0.781

cgggcactgctcacccgcttgggcg-gtactta	CRISPR spacer
caggcactgcttgcccgcttgggcgagcacgc-	Protospacer
*.*********..************ *.** .

23. spacer 2.7|114157|32|NZ_AP015030|PILER-CR,CRISPRCasFinder,CRT matches to MT586120 (Synechococcus phage S-CAM7 isolate 0809CC03, complete genome) position: , mismatch: 8, identity: 0.75

atctggtaatcatgggtatttcaaggggcact----	CRISPR spacer
atctggtgatcttgggtatttca----gctttggtg	Protospacer
*******.*** ***********    ** .*

24. spacer 2.7|114157|32|NZ_AP015030|PILER-CR,CRISPRCasFinder,CRT matches to NC_031927 (Synechococcus phage S-CAM7 isolate 0910CC49, complete genome) position: , mismatch: 8, identity: 0.75

atctggtaatcatgggtatttcaaggggcact----	CRISPR spacer
atctggtgatcttgggtatttca----gctttggtg	Protospacer
*******.*** ***********    ** .*

25. spacer 2.7|114157|32|NZ_AP015030|PILER-CR,CRISPRCasFinder,CRT matches to KU686213 (Synechococcus phage S-CAM7 isolate 0910SB42, complete genome) position: , mismatch: 8, identity: 0.75

atctggtaatcatgggtatttcaaggggcact----	CRISPR spacer
atctggtgatcttgggtatttca----gctttggtg	Protospacer
*******.*** ***********    ** .*

26. spacer 2.8|114218|32|NZ_AP015030|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048879 (Oceanospirillales bacterium S2-4-1H plasmid pA, complete sequence) position: , mismatch: 8, identity: 0.75

ggattaatccccctgttttgctcga-tagtcac	CRISPR spacer
tcattaatccccctgttttgtccgagtaggtt-	Protospacer
  ******************..*** *** .

27. spacer 1.2|113485|32|NZ_AP015030|CRISPRCasFinder matches to NZ_CP050107 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b1, complete sequence) position: , mismatch: 9, identity: 0.719

tgcggcctctgctgaaagcgagctgacgtgta	CRISPR spacer
tgcggcctctgctgaaagaaagcggggcggcg	Protospacer
****************** .*** *.   *..

28. spacer 1.2|113485|32|NZ_AP015030|CRISPRCasFinder matches to NZ_CP050112 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b5, complete sequence) position: , mismatch: 9, identity: 0.719

tgcggcctctgctgaaagcgagctgacgtgta	CRISPR spacer
tgcggcctctgctgaaagaaagcggggcggcg	Protospacer
****************** .*** *.   *..

29. spacer 1.2|113485|32|NZ_AP015030|CRISPRCasFinder matches to NZ_CP017243 (Rhizobium etli 8C-3 plasmid pRsp8C3b, complete sequence) position: , mismatch: 9, identity: 0.719

tgcggcctctgctgaaagcgagctgacgtgta	CRISPR spacer
tgcggcctctgctgaaagaaagcggggcggcg	Protospacer
****************** .*** *.   *..

30. spacer 1.1|113424|32|NZ_AP015030|CRISPRCasFinder matches to NZ_CP031005 (Lactobacillus curvatus strain TMW 1.1928 plasmid p-1.1928_2, complete sequence) position: , mismatch: 11, identity: 0.656

ttcgcgcttgctcatttctcatccccacagcc	CRISPR spacer
agggcgcttgctcatttatcgtccccttcttt	Protospacer
   ************** **.***** .  ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

271797 : 282538

Morganella_phage(20.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_062378614.1\|271797_273084_-	Y-family DNA polymerase	A0A1W6JNT0	Morganella_phage	9.1e-97	45.8
WP_011005854.1\|273073_273505_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	5.3e-17	40.5
WP_062378615.1\|273642_274593_+	hypothetical protein	A0A068CDF3	Rhizobium_phage	1.9e-51	38.1
WP_011005856.1\|274623_274899_+	hypothetical protein	A0A2H4J6R2	uncultured_Caudovirales_phage	7.3e-12	40.5
WP_011005860.1\|276267_276492_-	hypothetical protein	NA	NA	NA	NA
WP_011005861.1\|276532_276835_-	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	8.0e-12	46.4
WP_011005862.1\|276831_277134_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A141GEX6	Brucella_phage	1.2e-20	51.6
WP_011005863.1\|277335_278115_+	DUF4942 domain-containing protein	NA	NA	NA	NA
WP_011005864.1\|278268_278637_+	hypothetical protein	NA	NA	NA	NA
WP_062378618.1\|278669_278987_+	hypothetical protein	I3UM57	Rhodobacter_phage	6.5e-12	39.6
WP_011005866.1\|279042_279261_+	hypothetical protein	A0A2I6PI24	Pseudomonas_phage	6.2e-06	51.0
WP_062378625.1\|279399_280419_+	hypothetical protein	G9BWC3	Planktothrix_phage	7.9e-19	30.0
WP_011005868.1\|280561_280804_+	hypothetical protein	NA	NA	NA	NA
WP_062378620.1\|280855_282538_+	DNA cytosine methyltransferase	Q9ZXI4	Pseudomonas_virus	2.3e-193	70.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_AP015032

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_AP015029

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_AP015030

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection