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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_AP017974 Lactobacillus fermentum strain MTCC 25067 plasmid pLF25067 0 crisprs NA 0 0 0 0
NZ_AP017973 Lactobacillus fermentum strain MTCC 25067 1 crisprs cas14j,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,csa3 0 3 16 0

Results visualization

1. NZ_AP017973
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_AP017973_1 1246898-1247976 TypeV NA
15 spacers
cas14j,cas2,cas1,cas4,cas7,cas8c,cas5,cas3

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_AP017973_1 1.1|1246933|36|NZ_AP017973|CRT 1246933-1246968 36 GU323708 Lactobacillus phage phiPYB5, complete genome 19909-19944 2 0.944
NZ_AP017973_1 1.8|1247419|34|NZ_AP017973|CRT,PILER-CR,CRISPRCasFinder 1247419-1247452 34 MN830252 Lactobacillus phage JNU_P1, complete genome 23909-23942 2 0.941
NZ_AP017973_1 1.8|1247419|34|NZ_AP017973|CRT,PILER-CR,CRISPRCasFinder 1247419-1247452 34 GU323708 Lactobacillus phage phiPYB5, complete genome 16600-16633 2 0.941
NZ_AP017973_1 1.11|1247627|33|NZ_AP017973|CRT,PILER-CR,CRISPRCasFinder 1247627-1247659 33 MK483107 Vibrio phage vB_VpP_BA6, complete genome 31918-31950 7 0.788
NZ_AP017973_1 1.11|1247627|33|NZ_AP017973|CRT,PILER-CR,CRISPRCasFinder 1247627-1247659 33 NZ_CP015231 Epibacterium mobile F1926 plasmid unnamed1, complete sequence 715498-715530 7 0.788
NZ_AP017973_1 1.11|1247627|33|NZ_AP017973|CRT,PILER-CR,CRISPRCasFinder 1247627-1247659 33 KM067278 Pseudomonas phage vB_PaeP_PPA-ABTNL, complete genome 5049-5081 8 0.758
NZ_AP017973_1 1.11|1247627|33|NZ_AP017973|CRT,PILER-CR,CRISPRCasFinder 1247627-1247659 33 NC_047953 Pseudomonas phage vB_PaeP_130_113, complete genome 5211-5243 8 0.758

1. spacer 1.1|1246933|36|NZ_AP017973|CRT matches to GU323708 (Lactobacillus phage phiPYB5, complete genome) position: , mismatch: 2, identity: 0.944

gtgatagttgaatgcctgtactgccgttagttactt	CRISPR spacer
gcgatagttgaatgcccgtactgccgttagttactt	Protospacer
*.**************.*******************

2. spacer 1.8|1247419|34|NZ_AP017973|CRT,PILER-CR,CRISPRCasFinder matches to MN830252 (Lactobacillus phage JNU_P1, complete genome) position: , mismatch: 2, identity: 0.941

tccggtgtgattaccggttcgtcccgccaatcta	CRISPR spacer
tccggcgtgattaccgggtcgtcccgccaatcta	Protospacer
*****.*********** ****************

3. spacer 1.8|1247419|34|NZ_AP017973|CRT,PILER-CR,CRISPRCasFinder matches to GU323708 (Lactobacillus phage phiPYB5, complete genome) position: , mismatch: 2, identity: 0.941

tccggtgtgattaccggttcgtcccgccaatcta	CRISPR spacer
tccggagtgattaccgggtcgtcccgccaatcta	Protospacer
***** *********** ****************

4. spacer 1.11|1247627|33|NZ_AP017973|CRT,PILER-CR,CRISPRCasFinder matches to MK483107 (Vibrio phage vB_VpP_BA6, complete genome) position: , mismatch: 7, identity: 0.788

acaccaccaccgaaaacagcaccgaatgaagat----	CRISPR spacer
gcaccaccaccaagaacagcacc----gaagatactg	Protospacer
.**********.*.*********    ******    

5. spacer 1.11|1247627|33|NZ_AP017973|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP015231 (Epibacterium mobile F1926 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.788

acaccaccaccgaaaacagcaccgaatgaagat	CRISPR spacer
acaccaccgccgacaacagcaccgtgtccagaa	Protospacer
********.**** ********** .*  *** 

6. spacer 1.11|1247627|33|NZ_AP017973|CRT,PILER-CR,CRISPRCasFinder matches to KM067278 (Pseudomonas phage vB_PaeP_PPA-ABTNL, complete genome) position: , mismatch: 8, identity: 0.758

acaccaccaccgaaaacagcaccgaatgaagat-	CRISPR spacer
acaccaccaccgaaaccaccaccg-ctgctgtcc	Protospacer
*************** ** *****  **  * . 

7. spacer 1.11|1247627|33|NZ_AP017973|CRT,PILER-CR,CRISPRCasFinder matches to NC_047953 (Pseudomonas phage vB_PaeP_130_113, complete genome) position: , mismatch: 8, identity: 0.758

acaccaccaccgaaaacagcaccgaatgaagat-	CRISPR spacer
acaccaccaccgaaaccaccaccg-ctgctgtcc	Protospacer
*************** ** *****  **  * . 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 14432 : 84636 51 Streptococcus_phage(17.39%) transposase,protease NA
DBSCAN-SWA_2 89373 : 155484 54 unidentified_phage(19.23%) transposase,tRNA NA
DBSCAN-SWA_3 342908 : 351380 10 Enterococcus_phage(33.33%) NA NA
DBSCAN-SWA_4 409556 : 477975 56 Streptococcus_phage(43.48%) transposase,tRNA NA
DBSCAN-SWA_5 483058 : 542832 58 Lactobacillus_phage(25.0%) transposase,tRNA,head,protease NA
DBSCAN-SWA_6 655119 : 720426 59 Streptococcus_phage(15.79%) transposase,tRNA,protease NA
DBSCAN-SWA_7 740545 : 792340 42 Faecalibacterium_phage(14.29%) transposase,tRNA,protease NA
DBSCAN-SWA_8 805093 : 866025 51 Streptococcus_phage(26.67%) transposase,tRNA NA
DBSCAN-SWA_9 917392 : 925663 8 Staphylococcus_phage(28.57%) tRNA NA
DBSCAN-SWA_10 988496 : 1069647 59 Streptococcus_phage(25.0%) transposase,integrase attL 1001202:1001225|attR 1005917:1005940
DBSCAN-SWA_11 1204153 : 1263200 49 Bacillus_phage(28.57%) transposase,tRNA,integrase attL 1256939:1256997|attR 1269222:1269280
DBSCAN-SWA_12 1313005 : 1321794 12 Lactobacillus_phage(50.0%) transposase NA
DBSCAN-SWA_13 1429630 : 1499533 46 Streptococcus_phage(23.53%) transposase,protease NA
DBSCAN-SWA_14 1512451 : 1562976 45 Streptococcus_phage(15.0%) holin,protease,tail,tRNA,head,transposase,integrase attL 1553053:1553085|attR 1556685:1556717
DBSCAN-SWA_15 1619889 : 1745626 105 Lactobacillus_phage(16.67%) transposase,tRNA,protease NA
DBSCAN-SWA_16 1752280 : 1825310 51 Streptococcus_phage(23.81%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage