CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_AP017961	Synechococcus sp. NIES-970 plasmid plasmid2 DNA, complete sequence	0 crisprs	NA	0	0	0	0
NZ_AP017960	Synechococcus sp. NIES-970 plasmid plasmid1 DNA, complete sequence	0 crisprs	NA	0	0	1	0
NZ_AP017959	Synechococcus sp. NIES-970 DNA, complete genome	1 crisprs	cas3,cas14j,DinG,csa3	0	0	1	0
NZ_AP017963	Synechococcus sp. NIES-970 plasmid plasmid4 DNA, complete sequence	0 crisprs	NA	0	0	2	0
NZ_AP017962	Synechococcus sp. NIES-970 plasmid plasmid3 DNA, complete sequence	1 crisprs	cas4,WYL,cas3,cas8b3,cas7,cas5,cas1,cas2	0	12	0	0

1. NZ_AP017960

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	2217 : 9265	6	Bacillus_phage(33.33%)	integrase	attL 2319:2331|attR 8838:8850

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NZ_AP017960|2217:9265|DBSCAN-SWA
TATGGTCACTGACTTAACTCCCCTCTGGATTTCTCTCAAAACAGCAGGACTTGCCACTGTTGTGACGTTTGTTTTAGGGATTGGGGCAGCCTACTGGATGTTAGGCGATCGCCGACGTTGGAAATCACTTATTGAGAACATTTTTATTGCCCCCTTGATCCTCCCACCCACCGTGGTTGGCTTTTTGCTGTTGTTATTATTTGGCAATAATGGTCCTTTGGGGAAACTAAGCGCCCAGTTTGATTTCACAATTGTTTTTACCTGGTATGCGGCCGTAGTGACGGCGACCATTGTGTCTTTCCCTCTAATGTACAAAACAACATTGGGCGCCTTTGAGCAAGTTGATCGCCATCTTCTACAGGTCGCCCAAACCCTCGGAGCTTCTAGAGGATCTATCTTTTGGCGAGTTTTATTGCCCCTTTCTATGCCCGGGATTTTGGCTGCTACAACCCTGGCCTTTGCCCGTTCCTTGGGGGAATTTGGCGCCACCTTGATGTTAGCTGGGAATATTCCTGGTCAAACCCAGACGATCCCGATGGCCATTTATTTTGCCGTAGAAGCAGGAGCAATGGGCGAGGCATGGCTATGGGTTGGTGTTATTTTAGTAATTTCATGGTCTGGCATTGTGGCGACCAATATTTGGCAGGGATACGATCAAGGCCGACGCTCTCATCCCCAACAAGGGAGAAATCAATTAGTCATTTCACCCCAAGAAACAAGCAAGAATGGTCTATTTTTTGGTTCAAATCAACAGGTATCGACGCCAAGCATAAGCGTAAATATTCAAAAGCAGTTGGCACAATTCACCCTCAATATTGCTTTTGAAGCTCAGCAGGGAACCCTAGGGCTGTTGGGGGCATCGGGTTCTGGTAAAAGCATGATGCTCCGCTGTATTGCAGGTATAGAGACCCCAACCCAGGGACAAATTATCCTTAATGGTCGAACTTTATTTGACTCCAAACGGGGTATTAATTTACCGAGTCATCAGCGCAAGGTGGGCTTAGTCTTTCAAAACTATGCCCTGTTTCCTCATCTGACAGTAGCCCAAAACGTTGCCTTTGGTTTACAGCATCTCCCTGCCAAGCAGCGATCGCGGCGGGTTCAGGAGCAGTTGAGGTTGGTACATTTAGACGAGATGGGCGATCGCTATCCTCGTCAGTTATCCGGTGGGCAACAACAGCGCGTCGCCCTGGCGAGAGCCCTAGCACCGGAACCCGATGTATTGCTATTAGATGAGCCCTTTTCTGCCCTAGATACCCATCTCCGCAATGAACTGGAAAAGCAACTGCTCAAAACCCTCTCTAACTACAAAGGAGTCACCCTTTTCGTCAGTCATAATTTAGAAGAAGCCTATCGAGTGTGTCAGCAATTACTCGTCCTTGACCAGGGGAAAGTCGTGGCAGCAGGAGATAAACAAGCCATTTTTGATCGCCCCAACACCCTCACCGTTGCCCGACTGACTGGCTGCAAAAATTACTCCCGAATTCAACCCACCGATCGCCACACGCTCCGCGCCCTAGACTGGGGCTGCACCCTCAAAACCAATGATCCCGTTTCTCCTTTACAAACTCACATCGGAATTCGCGCCCATCAAATTACCTTCCTCGATACTTCTGAGCAACCCCACCCCCCAGTCAACACATTTCCAGGCTGGGTTGTTTGGACTAGCGAAACCCCTCATCGCATGACTATCTACCTAAAGCTAGAATCACCACCCATCAATACAGACGACTACCATCTACAGGCAGAAGTTTTCAAAGAGAAATGGGAAATTTTGCGGCATCGCCCACTGCCCTGGTCTGTGCAGTTGGACTCATCGCGTCTGATGCTCTTTTCTGATGAACTACGATATACGTAATGGGGCTAGTTCATATAAGCGGCAAATTTACCCCAGGACACCGGGGGAGAAACCATGGCCGCTGACTCCATAGCATAGGACGTCTGCCTCTATGATGAACGACTGATTAGACGATGCCATATTTCGCGGCGCACTTCTTAAAATCAAGCGGAATTGAGTCCACCCATGGCGGGGAGGTAATTGGCACTGCCATCGGTTTCATTAGCATGGAGATAATTAGAAGTGACACTGATATTGCTGTGACCGAGGTTGTCACTGAGAAGCTTGAGAGGACATCCCCCCGCAAGGCTATGGGTGGCATGGCTATGGCGCAGGTAGTGGGGCGAAAGTCTGATATTGAGGCGATCGCCTAAACTTTTAATGATGTTGTAGACCTGCTGCCGCGTTAACTGTGGCCCTTGACGCGAGCGAAACACATAGGGAGAATCCCCCCGCAATCGCTGTAAATATTGATAGAGATGGTCCGGGATATTGATGTGCCGCTGCTTATTCCCCTTACCAATGACCCGGAGGCGCATCCCTGTATCCGTTGGGCTGAAATCTGACCATTTCATCTCCACCAACTCACTGACCCGTAGACCGAGAGTGTATAAAGTCTGGGCAATCAACTCATTGCGATCGCTGTCCGCATGGAGCACCACAGCCTCCACCTGGGATTTAGTCAAAATCCGTTCATGGAGACAAGGGTGAGCATTGGGGGTTTTCAAGAGTACCACCGGATTAACCTGTAGATAGCCAGCCCGGTGGGCAAAATTGAAGAGACTTTTAATAATCGAAACTTTGCTGCGTTGGGTATTTTGGCTGTAGCGGAGAGAGAGCATTTGTTGCCACTGAATGAGGTCTTCGAGGGTAATCCGGTGGAGGGGCGCAAACTCAAAATGAAGCTGAAATTGACGAATAGTGGTGTGATAGGTCTGGCGGGAGCGAAGATTAACCCGAGAGAGCCAAAGCTCAATGACATTGTCATCCTGGGCAGCACGGATGAGTTGTTGAGTAGGTGATGAGAGGGATGACATTGGAGCGAAGCTAAGGTCTTCGCCCATTGTACTGGCCTTTCATACAGCATTAAAATCTAGCAGTTGTCTGAAAAGAAGAAAATCTGCACCTTCAATCCAGCAAATCATATTTTTTCTGGCTTTTAATGAGGACTTGAGTACAAAATGCATCAGGTCCTTCTTAGTGCGTACATTCGTTAACCGAAAGGCCTCTTCAAGCAGTTGATCATCGAGCGCTACATTATCAGTTCACATCGTTTTTTGTGTAAAAAGTATTAGTTTACGTGTATTAAATATGGCTCAAGGCCGACGGTCTTTAAGATCGGATTTATTTGTAGGACAAGCTGACTAGATAGGCAACTCTAAAGATAATTCCCATATGCAATCATCTAGACAAAGTGTTACAAAAACATTTTTTTGCACCTTTGGGACTTGATTGACAAAAAACATATGTACTACTAACAGGTCAGCGCCTAAATTTAGAGGAGACAATAAATCACACTAAGTTGAGCATGATGCCTGGTGGCAAATTTCTAGCTGAATTTATTTATAGGTGCGTTGGAATTTTCAGCCTGTTCAGCAAGCAAAAGCGCAAAATTAAAACTTGTATGTCAGCTTAACAAAAGAAACGTTTTGTCAAGCTTAGGCTGATTTAACTTTACTTATATGTAGTTCTGTCTGACAATCAAACAACTACAGCAATATTCATTTAGAGAGAGAGCGATTTTTTATCTTTTGGGGGTAACTTAAGCTAAAAGTGCTTTAATATCCCAAATTTTCAGATTATCTAAAATTTTTATGAAAATCACTCAAGATAGTTCTATTCTCGTTACAGGAGGGACAGGGTCGTTTGGGAAACAGTTTGTCGCCACGGTACTCCGGCATTTCCCGCAGATTCGACGCTTAGTGATCTACTCGCGAGACGAACTCAAGCAATTTGAGATGTCTCAAGTTTTTTCACCTAGGGAATATCCTGGTCTGAGGTATTTTATCGGCGATGTGCGAGACCAAGCACGCTTAAGACGAGCATTTGAACAAATCGACATTGTGGTACATGCGGCAGCGCTTAAACAAGTGCCGACAGCAGAGTACAACCCCATGGAATGTATTCGTACTAATGTGCTGGGGGCAGAAAATGTCATTCAAGCAGCACTGGATATGAGAGTGAAACGGGTGGTGGCATTATCTACGGATAAAGCGGCAGCTCCCGTGAATCTCTATGGTGCGAGTAAGCTTTGCTCAGATAAACTTTTTATTGCGGCAAATAATATCCGGGGGGGACGTGAAATTAACTTTAGTGTGGTGCGCTATGGCAATGTCATGGGTTCTCGGGGATCGGTTATTCCTTTTTTCCTACAAAAGCGTTCTGAGGGGAAATTGCCGATTACAGACCGCCGAATGACCCGTTTTAATATTTCCCTTGAAGAAGGGGTAGAAATGGTACTTTGGGCGATCGCCAATGGTTGGGGGGGAGAAATTTTTGTACCGAAAATACCTTCCTATCGAATTACAGATGTAGCCACGGCAATTTGTCCTGAGTGTGAGCAGGTAGATGTGGGCATTCGTCCTGGGGAGAAAATCCATGAGGAAATGATTACGGCTTCGGATTCCTACACCACCGTAGATTTGGGTAAATACTACGCAATTTTACCGATCAATGAGCGTTATTCTGTGGAGGATTATTGTCAGGCTACGGGCGCGAAACAAGTGCCCATTGGCATGAGCTATAACTCTGGTGATAATGAGCAGTTTTTAACTGTGGAAGAATTACGAGAACTCATCCACAGCCATGTTGAGTCTAGTTTTTCCTGATGAGTAGCTATATTCCCTATGGACGGCAAGATATTAACCAAGCAGATATTGATGCCGTGATCGAGGTGTTGCGTTCTGATTGGCTTACCCAAGGCCCAATGATCGAACGATTTGAACAGACTGTGGCGAATTATTGTGGGGCAAAATATGCCGTTGCTGTCTCGAGTGCCACTGCAGGTTTACATTTAGCCTGTTTAGCAGCAGGTTTGGGGGAAGGGGATTACTTCTGGACTTCGCCGATTACCTTTGTTGCTTCTGCGAATTGTGGCCTGTACTGTGGGGCACAGGTGGATTTTGTAGACATCGATCCACGCACCTACAACATGAGTGTTGAGCGTCTTGAAGAAAAACTGATCACCGCCGAAAAAACAGGAAAATTACCCAAATTGGTCATTCCAGTTCACCTCGCTGGACAATCCTGTGCGATGGAACGGATTTATCAATTATCTCAAAAATATAGTTTTCAGATTCTAGAGGATGCATCCCATGGCATCGGAGGGAAATATCAAGGCAAACCGGTGGGCAGTTGTGAATTTTCGGATATGGCGGTGTTTAGTTTTCATCCTGTCAAAATTATCACCACAGGCGAAGGCGGCATGATCCTCACCAACAGAGAGGATTTATATGAGAAACTGATTCGCTTGCGATCGCATGGCATTACCCGTGAACCCGACCTGATGACAGAACCTTCCCATGGGCCTTGGTATTATCAGCAACTGGAATTGGGCTATAACTACCGGATGACAGACATTCAAGCAGCCTTAGGGATTAGTCAAATGGAGCGATTAGATACATTTGTTGAGCGGCGGCGCTTTTTGGCTGGACGGTATGATGAATTGCTTTCTGATTTACCCTTAACGCTTCCTTGGCAACATCCTGATACAGAATCGAGTTGGCACCTATATATTATTCGTCTGCAATTAGAGAAGCTTTATAAAACCCATCGTCAAGTGTTTGAAGAATTGCGGGAAGTAGGTATTGGTGCAAATTTACATTATATTCCAGTCCATACTCAACCCTACTATCAACAATTAGGTTATGAGTGGCAAAATTTGGCAGCGGCCAAAGCATACTATCAAATGGCAATTAGCATTCCTCTGTATTATGGCTTGAGTTCAGAAAATCAAGATCAAGTCTATAAAAATCTCAAGCAATTACTCCAATGAAAGTTGTAATTATTGTACAAGCTAGGATGACCTCAACACGCTTACCAGGCAAGGTCTTAAAGGAAGTTTTAGGAAAATCTTTATTAGAGTATCAGATTGAAAGATTAAAACAGGTTAAATCAGCAGAAAATATTATTATTGCAACGACAGTTAATGAGGCAGACCAGCCTATTATAGAATTATGTAAACGGCTGAGTATTGATTATTTTCGTGGCTCTGAAACTGATGTTTTATCCAGATATTATCAAGCAGCTTTAGCTCACCGGGCTGATGTTGTGGTGAGGGTTACATCGGATTGTCCTTTGATTGATCCTTGGGTCATTAATCAAGTTATTCAGTATTATTTAGACAACCAGCTTGAATATGATTATGTTTCTAACAGTTTAGAGCGGACTTATCCACGAGGAATGGACACCGAAGTTTTCTCTTTTAAGGCATTAAAAGAGGCTTTTCAAGAAGCAACTGCACAACCAGATAGAGAACATGTCACACCATTTATTCATCGACAACCAGAACGATATCATTTAGGACATGTTAAGTATTCTGAAGACTATAGTCATTATCGTTGGACAGTTGACACACTGGAAGATTTCGAATTGGTTCAGAAAATAATTGAAGCACTTTATCCAAGCAATCCTGAATTCACTTTAGAGGATTGTTTAAGACTACTTAAAAGATATCCAAGCTGGTCAAAAATTAATTCTCATATTGAGCAAAAGCAGTATGGGCAATAAATAAATTAAAAAAATCAATTTATTTCCAATCTTGAGAAGTGCTGCAGAGAAAATCATCGGCGATCGCCTTTTCAAAGTCCTAGGGACACTGCTTAGGGAAAGTTTTTAATGGCAAATCTGTTTCTCGTAAAGCCAGATCAATACCTGCTTCAAAACTATCCTCTAGGGCATCATCAAGACGAGATTTCAAGCTGGGATTACGCCGCAAATGGCGCTTGATAGCCCGTCGCTGCTCCCGAATAATCAGGAACCAACTGCGCGATCGCCGTTCTGGTTGATATTCCCACTTAAGCAGATGTCCGATTAAAGCAGTAAGGCGACTGACAAGTTCTCGATATTCTTCTTGTCTCCCCAAGGCTTCTAGCTCCTCCTGTAAATTTTGCCAGTCTAACTCCGAGACTTTTCTCTGGGCGATCGCCTGAACCTGCCACTGTGTCCAGCCATAAAAATCTTGTTCATATTGAGAAACGGTGTCGGATTTTAT

Protein sequences of DBSCAN-SWA_1

>NZ_AP017960|2217:9265|5867_6881_+|WP_096419069.1|DBSCAN-SWA
MKITQDSSILVTGGTGSFGKQFVATVLRHFPQIRRLVIYSRDELKQFEMSQVFSPREYPGLRYFIGDVRDQARLRRAFEQIDIVVHAAALKQVPTAEYNPMECIRTNVLGAENVIQAALDMRVKRVVALSTDKAAAPVNLYGASKLCSDKLFIAANNIRGGREINFSVVRYGNVMGSRGSVIPFFLQKRSEGKLPITDRRMTRFNISLEEGVEMVLWAIANGWGGEIFVPKIPSYRITDVATAICPECEQVDVGIRPGEKIHEEMITASDSYTTVDLGKYYAILPINERYSVEDYCQATGAKQVPIGMSYNSGDNEQFLTVEELRELIHSHVESSFS
>NZ_AP017960|2217:9265|8043_8781_+|WP_096419071.1|DBSCAN-SWA
MKVVIIVQARMTSTRLPGKVLKEVLGKSLLEYQIERLKQVKSAENIIIATTVNEADQPIIELCKRLSIDYFRGSETDVLSRYYQAALAHRADVVVRVTSDCPLIDPWVINQVIQYYLDNQLEYDYVSNSLERTYPRGMDTEVFSFKALKEAFQEATAQPDREHVTPFIHRQPERYHLGHVKYSEDYSHYRWTVDTLEDFELVQKIIEALYPSNPEFTLEDCLRLLKRYPSWSKINSHIEQKQYGQ
>NZ_AP017960|2217:9265|8860_9265_-|WP_096419153.1|DBSCAN-SWA
MKSDTVSQYEQDFYGWTQWQVQAIAQRKVSELDWQNLQEELEALGRQEEYRELVSRLTALIGHLLKWEYQPERRSRSWFLIIREQRRAIKRHLRRNPSLKSRLDDALEDSFEAGIDLALRETDLPLKTFPKQCP
>NZ_AP017960|2217:9265|6880_8047_+|WP_096419070.1|DBSCAN-SWA
MSSYIPYGRQDINQADIDAVIEVLRSDWLTQGPMIERFEQTVANYCGAKYAVAVSSATAGLHLACLAAGLGEGDYFWTSPITFVASANCGLYCGAQVDFVDIDPRTYNMSVERLEEKLITAEKTGKLPKLVIPVHLAGQSCAMERIYQLSQKYSFQILEDASHGIGGKYQGKPVGSCEFSDMAVFSFHPVKIITTGEGGMILTNREDLYEKLIRLRSHGITREPDLMTEPSHGPWYYQQLELGYNYRMTDIQAALGISQMERLDTFVERRRFLAGRYDELLSDLPLTLPWQHPDTESSWHLYIIRLQLEKLYKTHRQVFEELREVGIGANLHYIPVHTQPYYQQLGYEWQNLAAAKAYYQMAISIPLYYGLSSENQDQVYKNLKQLLQ
>NZ_AP017960|2217:9265|2217_4074_+|WP_096419067.1|DBSCAN-SWA
MVTDLTPLWISLKTAGLATVVTFVLGIGAAYWMLGDRRRWKSLIENIFIAPLILPPTVVGFLLLLLFGNNGPLGKLSAQFDFTIVFTWYAAVVTATIVSFPLMYKTTLGAFEQVDRHLLQVAQTLGASRGSIFWRVLLPLSMPGILAATTLAFARSLGEFGATLMLAGNIPGQTQTIPMAIYFAVEAGAMGEAWLWVGVILVISWSGIVATNIWQGYDQGRRSHPQQGRNQLVISPQETSKNGLFFGSNQQVSTPSISVNIQKQLAQFTLNIAFEAQQGTLGLLGASGSGKSMMLRCIAGIETPTQGQIILNGRTLFDSKRGINLPSHQRKVGLVFQNYALFPHLTVAQNVAFGLQHLPAKQRSRRVQEQLRLVHLDEMGDRYPRQLSGGQQQRVALARALAPEPDVLLLDEPFSALDTHLRNELEKQLLKTLSNYKGVTLFVSHNLEEAYRVCQQLLVLDQGKVVAAGDKQAIFDRPNTLTVARLTGCKNYSRIQPTDRHTLRALDWGCTLKTNDPVSPLQTHIGIRAHQITFLDTSEQPHPPVNTFPGWVVWTSETPHRMTIYLKLESPPINTDDYHLQAEVFKEKWEILRHRPLPWSVQLDSSRLMLFSDELRYT
>NZ_AP017960|2217:9265|4217_5090_-|WP_096419068.1|integrase|DBSCAN-SWA
MSSLSSPTQQLIRAAQDDNVIELWLSRVNLRSRQTYHTTIRQFQLHFEFAPLHRITLEDLIQWQQMLSLRYSQNTQRSKVSIIKSLFNFAHRAGYLQVNPVVLLKTPNAHPCLHERILTKSQVEAVVLHADSDRNELIAQTLYTLGLRVSELVEMKWSDFSPTDTGMRLRVIGKGNKQRHINIPDHLYQYLQRLRGDSPYVFRSRQGPQLTRQQVYNIIKSLGDRLNIRLSPHYLRHSHATHSLAGGCPLKLLSDNLGHSNISVTSNYLHANETDGSANYLPAMGGLNSA

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096419067.1|2217_4074_+	molybdate ABC transporter permease subunit	W8CYL7	Bacillus_phage	6.1e-09	29.5
2319:2331	attL	NA	NA	NA	NA
WP_096419068.1|4217_5090_-|integrase	tyrosine-type recombinase/integrase	A0A0E3T6D9	Bacillus_phage	1.8e-16	29.4
WP_096419069.1|5867_6881_+	UDP-N-acetylglucosamine 4,6-dehydratase (inverting)	L7Y3T9	Megavirus	1.9e-41	34.8
WP_096419070.1|6880_8047_+	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	A0A2K9L0G1	Tupanvirus	3.9e-38	34.0
WP_096419071.1|8043_8781_+	glycosyltransferase family protein	A0A0F7L2F7	uncultured_marine_virus	9.4e-14	27.6
WP_096419153.1|8860_9265_-	DUF29 domain-containing protein	A0JC30	Ralstonia_phage	5.0e-17	40.8
8838:8850	attR	NA	NA	NA	NA

2. NZ_AP017959

CRISPR-Cas detection and classification

Crispr_ID: NZ_AP017959_1

• CRISPR_ID: NZ_AP017959_1
• CRISPR_location: 1151223-1151305
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_AP017959_1

Consensus_repeat	Method
GTGATTTATCCGGGGGTAGAAATTGGCGA	CRISPRCasFinder

spacers of NZ_AP017959_1

>1.1|1151252|25|NZ_AP017959|CRISPRCasFinder
TCGCACCTGCATCATGGCCAATGCC

CRISPR arrays and Neighbor proteins around NZ_AP017959_1

CRISPR arrays

The CRISPR arrays of NZ_AP017959_1

>merge|NZ_AP017959|1|1151223-1151305|CRISPRCasFinder
GTGATTTATCCGGGGGTAGAAATTGGCGATCGCACCTGCATCATGGCCAATGCCGTGATTTATCCGGGGGTAAAAATTGGCGA

>NZ_AP017959|1|1|1151223-1151305|CRISPRCasFinder
GTGATTTATCCGGGGGTAGAAATTGGCGA	TCGCACCTGCATCATGGCCAATGCC
GTGATTTATCCGGGGGTAAAAATTGGCGA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP017959.1|WP_096417089.1|1160120_1160879_+|6-phosphogluconolactonase	unknown	unknown	gnl|CDD|376480
NZ_AP017959.1|WP_024544687.1|1157488_1158130_-|transcription-antitermination-protein-NusB	unknown	unknown	gnl|CDD|182007
NZ_AP017959.1|WP_024544697.1|1147412_1147847_+|Holliday-junction-resolvase-RuvX	unknown	unknown	gnl|CDD|234639
NZ_AP017959.1|WP_024544702.1|1140503_1141226_+|UMP-kinase	unknown	unknown	gnl|CDD|239787
NZ_AP017959.1|WP_024544701.1|1141212_1141761_+|ribosome-recycling-factor	unknown	unknown	gnl|CDD|178850
NZ_AP017959.1|WP_096418962.1|1148415_1150098_-|GTPase-HflX	unknown	unknown	gnl|CDD|274455
NZ_AP017959.1|WP_096417072.1|1145232_1146111_+|hypothetical-protein	unknown	unknown	gnl|CDD|139494
NZ_AP017959.1|WP_024544689.1|1155859_1156567_-|response-regulator-transcription-factor	unknown	unknown	gnl|CDD|223816
NZ_AP017959.1|WP_024544686.1|1158185_1158950_-|DUF502-domain-containing-protein	unknown	unknown	gnl|CDD|225480
NZ_AP017959.1|WP_096417069.1|1142214_1144743_-|NTP-transferase-domain-containing-protein	unknown	unknown	gnl|CDD|100097
NZ_AP017959.1|WP_096417083.1|1152929_1154672_-|EAL-domain-containing-protein	unknown	unknown	gnl|CDD|238923
NZ_AP017959.1|WP_096417075.1|1146193_1147381_+|GNAT-family-N-acetyltransferase	unknown	unknown	gnl|CDD|379228
NZ_AP017959.1|WP_096417066.1|1141838_1142099_+|hypothetical-protein	unknown	unknown	unknown
NZ_AP017959.1|WP_096417092.1|1160917_1161754_+|FHA-domain-containing-protein	unknown	unknown	gnl|CDD|224630
NZ_AP017959.1|WP_096417081.1|1151860_1152889_-|tRNA-dihydrouridine-synthase-DusB	unknown	unknown	gnl|CDD|129820
NZ_AP017959.1|WP_096417086.1|1156797_1157418_+|molecular-chaperone-DnaJ	unknown	unknown	gnl|CDD|371751
NZ_AP017959.1|WP_024544694.1|1150247_1150820_-|TerD-family-protein	unknown	unknown	gnl|CDD|376767
NZ_AP017959.1|WP_024544682.1|1161910_1163029_+|NADH-quinone-oxidoreductase-subunit-NuoH	unknown	unknown	gnl|CDD|214341
NZ_AP017959.1|WP_024544696.1|1147843_1148293_-|hypothetical-protein	unknown	unknown	unknown
NZ_AP017959.1|WP_024544690.1|1154705_1155713_-|PhoH-family-protein	unknown	unknown	gnl|CDD|224616

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_AP017959.1|WP_096417089.1|1160120_1160879_+|6-phosphogluconolactonase	gnl|CDD|376480	pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase.	5.84504e-96
NZ_AP017959.1|WP_024544687.1|1157488_1158130_-|transcription-antitermination-protein-NusB	gnl|CDD|182007	PRK09634, nusB, transcription antitermination protein NusB; Provisional.	1.74302e-102
NZ_AP017959.1|WP_024544697.1|1147412_1147847_+|Holliday-junction-resolvase-RuvX	gnl|CDD|234639	PRK00109, PRK00109, Holliday junction resolvase RuvX.	7.17474e-58
NZ_AP017959.1|WP_024544702.1|1140503_1141226_+|UMP-kinase	gnl|CDD|239787	cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).	4.21438e-149
NZ_AP017959.1|WP_024544701.1|1141212_1141761_+|ribosome-recycling-factor	gnl|CDD|178850	PRK00083, frr, ribosome recycling factor; Reviewed.	2.38748e-101
NZ_AP017959.1|WP_096418962.1|1148415_1150098_-|GTPase-HflX	gnl|CDD|274455	TIGR03156, GTP_HflX, GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). [Unknown function, General].	0
NZ_AP017959.1|WP_096417072.1|1145232_1146111_+|hypothetical-protein	gnl|CDD|139494	PRK13335, PRK13335, superantigen-like protein; Reviewed.	0.00568119
NZ_AP017959.1|WP_024544689.1|1155859_1156567_-|response-regulator-transcription-factor	gnl|CDD|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.46751e-88
NZ_AP017959.1|WP_024544686.1|1158185_1158950_-|DUF502-domain-containing-protein	gnl|CDD|225480	COG2928, COG2928, Uncharacterized conserved protein [Function unknown].	6.31269e-78
NZ_AP017959.1|WP_096417083.1|1152929_1154672_-|EAL-domain-containing-protein	gnl|CDD|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	2.09002e-74
NZ_AP017959.1|WP_096417075.1|1146193_1147381_+|GNAT-family-N-acetyltransferase	gnl|CDD|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	4.0163e-07
NZ_AP017959.1|WP_096417069.1|1142214_1144743_-|NTP-transferase-domain-containing-protein	gnl|CDD|100097	cd05805, MPG1_transferase, GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity. The protein contains an N-terminal NTP transferase domain, an L-beta-H domain, and a C-terminal PGM-like domain that belongs to the alpha-D-phosphohexomutase superfamily. This subfamily is limited to bacteria and archaea. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this group appear to lack conserved residues necessary for metal binding and catalytic activity. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NZ_AP017959.1|WP_096417092.1|1160917_1161754_+|FHA-domain-containing-protein	gnl|CDD|224630	COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms].	1.72498e-16
NZ_AP017959.1|WP_096417081.1|1151860_1152889_-|tRNA-dihydrouridine-synthase-DusB	gnl|CDD|129820	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family. This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. [Unknown function, General].	1.94102e-158
NZ_AP017959.1|WP_096417086.1|1156797_1157418_+|molecular-chaperone-DnaJ	gnl|CDD|371751	pfam11833, CPP1-like, Protein CHAPERONE-LIKE PROTEIN OF POR1-like. This entry includes proteins from bacteria and eukaryotes. The plant member, CHAPERONE-LIKE PROTEIN OF POR1 (CPP1), is an essential protein for chloroplast development, plays a role in the regulation of POR (light-dependent protochlorophyllide oxidoreductase) stability and function.	1.7002e-53
NZ_AP017959.1|WP_024544694.1|1150247_1150820_-|TerD-family-protein	gnl|CDD|376767	pfam02342, TerD, TerD domain. The TerD domain is found in TerD family proteins that include the paralogous TerD, TerA, TerE, TerF and TerZ proteins It is found in a stress response operon with TerB and TerC. TerD has a maximum of two calcium-binding sites depending on the conservation of aspartates. It has various fusions to nuclease domains, RNA binding domains, ubiquitin related domains, and metal binding domains. The ter gene products lie at the centre of membrane-linked metal recognition complexes with regulatory ramifications encompassing phosphorylation-dependent signal transduction, RNA-dependent regulation, biosynthesis of nucleoside-like metabolites and DNA processing linked to novel pathways.	1.19863e-104
NZ_AP017959.1|WP_024544682.1|1161910_1163029_+|NADH-quinone-oxidoreductase-subunit-NuoH	gnl|CDD|214341	CHL00032, ndhA, NADH dehydrogenase subunit 1.	0
NZ_AP017959.1|WP_024544690.1|1154705_1155713_-|PhoH-family-protein	gnl|CDD|224616	COG1702, PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms].	1.29906e-140

Protein sequences

>NZ_AP017959.1|WP_024544694.1|1150247_1150820_-|TerD-family-protein
MTINLNKGQGISLKKAAPSLTAAFIGLGWDVKQGSGGDFDLDASIFMLGANGKLISDQHFIFYNNLTSPDPEQSVKLMGDNRTGAGDGDDEVIIIDFRKIPSNVAKLVIIISIYDAETRRQNFGQVQNAYVRLVNVETKGEVLRYSLQEHFSTETALVMAEVVNEAGEWRLNAVGDGYQGGLQTLLDRYQ
>NZ_AP017959.1|WP_096418962.1|1148415_1150098_-|GTPase-HflX
MDTIHGNLKGLKSSQLKQLQRLYQQSVPGDRLTTPELAQRIAAISSELNQPVSIYLNRRGKVIRVGVGAPRETQIPPLELPRYGAERLSGIRCLTASPKDHPPNEACLTSMVLQRLDALVTFTLSGSGSTQRGRGSVGYIKNVYLSHLLPQNHPSHAYWQVSEAQSLEAIAQQDFLDLVENLEAEFRRDFTAQRVEAGHDRVILVGLQTEGIGDRRFQDGLTELERLVDTAGGEVLLKMEQKRAKPHPQTLVGSGKVEEIALQVQTLGANLVVFDQDLSPAQGRNIERQLGVKVCDRTEVILDIFAQRAQSQAGKLQVELAQLEYMLPRLVGRGQAMSRLGGGIGTRGPGETKLETERRTIQSRLSRLQKEVDQLQAHRSRMRSQRQRQDVPTFAIVGYTNAGKSTLINALTNAEVYAADQLFATLDPTTRRLTLTDENHATQTILLTDTVGFIHELPPALVDAFRATLEEVTEADALIHVVDLSHPAWRHQLTSVEKILADMPIMPAQALLVFNKLDQVSSEALQDAKLLHPNAVYISASDRLGFETLRQRLAQMLKQL
>NZ_AP017959.1|WP_024544696.1|1147843_1148293_-|hypothetical-protein
MNASERALGVDLATKIASVVNLFRAEFPDARADLKPWRNDPETREWVDPDSIDIGFHLPGWSPRFQGRSMLVQIRFFTDPADQVQKFIGIETAGFNHEGEAWRLSTIAQWQLVGNYQPAQDVCDRLQRFSQRAFELFAPSVADDADSVA
>NZ_AP017959.1|WP_024544697.1|1147412_1147847_+|Holliday-junction-resolvase-RuvX
MTTVAALGLDIGRKRIGVAGCDRLGLLATALTTIERTTLEEDLAAIGHWVEQRQIEILVVGLPYAMDGTIGKQAKHTQKFARKLEAAFNLPLAYVDERLTSVEAETQLKAAKQYDRQQKGLVDQRAAQIILQQWLEARRVAVMP
>NZ_AP017959.1|WP_096417075.1|1146193_1147381_+|GNAT-family-N-acetyltransferase
MTAGMSKQGKVSIRPVQYRDLAAIANFATEAELDGTSPLDITLADHLENTKNFYGLVKLLSIFPNPRQYSFHGYVIEVDSRLVGFVKISPFNSSQSTWRVEQVIVDPSFPKLQYHGAARDPGSALLRYCFDHVVEARNWVLEVNVNAQQTLSLYRQNGFQPLANLTYWAIAPEILGELALQEPALPNLMPVGNADARLLYQLDTASMPPMLRQVFDRHVQDFKSDPLSNLVCRVQHWTQHVDAVEGYVFEPQRKAAIGYFAVQLAKQDHKPHHGRLTVHPAYTWLYPELMIKMAQIAQIRPEQPLLTTSTDYQPEREEFFETVGASPMEHTLLMSRSVWHKVRESQPFEALQLSGVLQGLQPMRSPIPSRINWFKNHPSLKLPKEHHQQDFSPEN
>NZ_AP017959.1|WP_096417072.1|1145232_1146111_+|hypothetical-protein
MSQADPQASLVRLKQALAQLQQVVSNLEADPTEIPAAALDILSNDTESLIQQLQRERPETTPEVITPVVEVPVNTPGIEVPVTPVPKVKPRRVEPVPRRPRRQPWWQQQKIWIGVATVAIAFIFIWKFTIQTPQVSEEVAQSPGTESTEEVIPVTPQPEAPAPKVAPNISEPTPTPLPSAASPKPLTPEQRLIAAIQNQLDEVTQPYGDNIVRSIQADFETNTLRITVGDAWYLLREGLQDRLGMDVLELAQLLDFKKMVVEDLAGNFVARNPVVGDRLVIVRRYQDFQGDS
>NZ_AP017959.1|WP_096417069.1|1142214_1144743_-|NTP-transferase-domain-containing-protein
MRAVLMAGGSGTRLRPLTCDLPKPMVPVLNRPIAEHILNLLKRHNITEVIATLHYVPDVMRDYFQDGRDFGVKMHYAVEEDHPLGTAGCVKNIEELLTETFVVISGDSVTDFDLSAAIAFHKEKGSKATLVLTRVPNPVEFGVVITDEGGRICRFLEKPSTSEIFSDTVNTGTYILEPEVLQYLPAQEESDFSKDLFPLLLDRGELMYGYVAEGYWCDVGHLDAYRKAQYDALARKVQVQYSYEERSPGIWIGHNTFIDDSAQIHPPAMIGDNCRIGARVQIEPGTVIGDNVTVGADSDLKRPILWNGVTLGEEVQLRACTVVRGSRIDRRAHILEGAVVGALSTVEEEAHIGTGVRIWPNKRIEAGAIVNINLIWGSTAQRNLFGQRGVSGLANIDITPEFAVKLGAAYGSTLKTGSMVIVSRDQRSVSRMVSRSLIAGLMSAGVCVQNLQATAIPIARTMTSIFDVEGSIHVRLHPERSDHLLIEFLDSQGINISKAKEKKIEGAYFKDDLRRVAIAEIGEMSYPAQIIEQYSQRFEDHLNVGALTHSGSKVVIDYAYAVSGAVLPTLLNKFGCDAVVLNASLKQSSPVGPEKESLLLQLGHVVEALGASMGVQVAANGEQLTLVDESGLSIQGERLTALLVSILLMARPRGSVVVPVYASSAIEQIARRHDGHVIRTKANPTALMEACRNNPNVVLGGSGDMGFIFPELHPGFDAMFTIAKLIEMLTIQERSLGQIRAELPMVFHKSYTIRCPWRIKGSLMRHLVEIHASDRLELIDGVKIIDPVSDNWVLVLPDAGEPLVHIYANSDSREWVEESLRDYRHKVQAFIEREQSGDLTDF
>NZ_AP017959.1|WP_096417066.1|1141838_1142099_+|hypothetical-protein
MNELKSDLTQIDSLELAQALAAKLAIAPNDWHRLKGNRKAQASQQLTAALVFLLNDNPEAALIHLEQAKGWLDRSLSAPPCPSHGR
>NZ_AP017959.1|WP_024544701.1|1141212_1141761_+|ribosome-recycling-factor
MQLSELKDNMTKTIEATQRSFNTLRTGRASAALLDRITVEYYGVDTPLKSLANISTPDSSTIMIQPFDRGSMNTIERAISMSDLGLTPSNDGQNIRLNIPPLTKERRQELVKTASKLAEEGKVALRNIRRDAIDDVRKQEKNSDISEDEARSLQDDIQKVTDEFTKKIDELLKVKEKDIMTV
>NZ_AP017959.1|WP_024544702.1|1140503_1141226_+|UMP-kinase
MAYQRVLLKLSGEALMGDLGYGIDPQIVSDIAKDIAAVVASGVQVAIVVGGGNIFRGVQASAKGMDRATADYIGMIATVMNAMTLQDALEQIDIPTRVQTAIAMQEVAEPYIRRRAIRHLEKGRVVIFGAGSGNPFFTTDTTAALRAAEIDAEVIFKATKVDGIYDSDPAKNPQAKRYESLTYSHVLANDLRVMDGTAIALCKENDIPIMVFNLFEKSNIVRAVQGEPVGTIVGGSCAVK
>NZ_AP017959.1|WP_096417081.1|1151860_1152889_-|tRNA-dihydrouridine-synthase-DusB
MTFDAPLKIGPVTLQSRVLQAPLSGVTDLVFRRLVRRYAPNSMMYTEMVRAQEVHHLATLPRLMEIDPGEQPISIQLFDCRPDFMGEAAKKAVAEGAQTIDINMGCPVNKITRKGGGSSLLRQPDVAEAIVRAVVEAVDVPVTVKTRLGWSEEEIVILDFAKRLEAAGAQMLTVHGRTRAQGYTGKAQWQWIKKVKAALSIPVIANGDIFSVEAAIACLEETGADGVMCSRGTLGYPFLVGEIDHFLKTGQRRPQPTVVELLECAKEHLDGLWAYKGQKGIYQARKHLTWYCRDFAGAAEFRDHLNKINTVPEGQALLDAAIETIQNTQEPCPIQSPQMAMI
>NZ_AP017959.1|WP_096417083.1|1152929_1154672_-|EAL-domain-containing-protein
MTTILIIEDDEIVRKLIRKILSQKQYEVLEAAEGQGGVRLAMMARPDLIICDVMMPGIDGYGVLQQLQSQPETAMIPFIFLTACAERQDIRQGMRLGADDYLTKPFTKEDLLSAIAARLSKVSSFQQHFEPQDINFECPPEPAQQEGNGYCDDRFRLQEIFEAIACNFPDATQGQLSLLTIRLAGYGAVCAHRDVSKRASLDQGIVGRLTEICRQQGWLVRLAEDQFCALLSAPQTHDQIEAIAQAIVKIFQDPLTLGGEQLSLPATVGIAQYPADADNLADLVAQAQAAQGPKGYQWASRHPPTQLVYPSDIDLAKDLQNALQHEQLTILYQPQFDLGSGAMVGAETLLHWEHPLRGAISIPELLAIAKDNNLLDTLDQYKLNQICRQLRHWQIPASPAYQIMINLSAAQFNQANFHQELSRLFIENALTPACLTLEFAEATLLKNPATSIRRLKAIKTLGVKIALTGFGQGYSSLDYLKKFPFDYLKLDPALIRNLHQNQAQKTLVSTLITTAHGQQRQAIAEGIEHQAELDCLRQLHCDYGQGFLLGYPIHGAEFERLAFDPTIFRCNLVTFDAPNS
>NZ_AP017959.1|WP_024544690.1|1154705_1155713_-|PhoH-family-protein
MSEASQTIPLPSLESAIALSGIKEENLKFLAQHTGTSVVLRGQDILVRGREKAVDRCIKALYFLQPFWETAQHISQPDFLTAFHAIDTHQVEEYQDLQKQTLGKTRRGEYIRAKTFRQRQYVQLIQKHDITFGIGPAGTGKTFLAAVLAVQALLQDQVERLILTRPAVEAGEKLGFLPGDLQQKVDPFLRPLYDALYQFIDPLKLPELMEKGRIEIAPLAYMRGRTLSNSFVIVDEAQNTTPAQLKMVLTRLGFGSKMVITGDITQTDLPSHQSSGLITASKVLKSVEGIGFCYLTDADVVRHPLVQKIVGAYERFENYGPASPKRFSGNQTRGE
>NZ_AP017959.1|WP_024544689.1|1155859_1156567_-|response-regulator-transcription-factor
MASAKILVVDDDPAIRTLISRFLSQRGYAVSEAGDGQSAWETFQSLDPDLVILDINLPDTLGYALCEQMQASKDTYILMLTSRADATDKVRGFSQGADDYLTKPFDIIELEHRVQAILRRRRSPAATPQTPVQNFTCGALTIDSMRHAVSIHGEPISLTALEFNLLYFLATHADKVWRRAELIQAVWGYDYVGDQRVVDVHIGQIRRKLEALMEHQTPIKTIRGVGYIFETNPTG
>NZ_AP017959.1|WP_096417086.1|1156797_1157418_+|molecular-chaperone-DnaJ
MSEQNPYKTLGLVETASFEEIQAAKQKLSTQYQGDRAVVDELEAAYDAIIMDRLRQRQQGTLEVPDQIRFAETPPKEAKVAPVTLDMGRLPQWLTDLRDTPEPQTLNLALGINGAIAIVGLFLSPELASTILTAALMVNIYLIYRKEQRFGRAALISVVALILGIGLGSGLNALLSSLNVTLAIATEQILLIASSLTFGLSTSLLR
>NZ_AP017959.1|WP_024544687.1|1157488_1158130_-|transcription-antitermination-protein-NusB
MPARKQPRSVAREIALLSLSQIKGNPEKLEAVELDELMLAAVRALNGEIHDALEDAASEVSRAEDQLLRSETLAVNVKSARTMVQDALTLTRAAINRLGHVVELPEFLQLTRQHEVRGFALDILTTLRRRNEQIKETIEQSLVDWQYHRLPRLDRDILRIAVAEILFLETPYKVAINEAVELAKRYSDEDGHRFINGVLRRVTDRMRTEGSPE
>NZ_AP017959.1|WP_024544686.1|1158185_1158950_-|DUF502-domain-containing-protein
MLERLKQDLKNDLIAGLLVVIPLATTIWLTITIATWVINFLTQIPKQINPFDGLDPILTNALNIGVGITVPLTFILVIGLMARNFVGRWLLDLGEQILQGIPLAGAIYKTLKQLLETLLRDSQSRFRRVVMVEYPRPGVWTLGFVTGAVSPQLQAQVSDPLLSVFIPTTPNPTSGWYAMVPENEVINISMSIEDAFKILISGGIVSPDLEADRKPMRATMPLNLNRRKKPRELERSLDDLNTPQVDMLSLEEEV
>NZ_AP017959.1|WP_096417089.1|1160120_1160879_+|6-phosphogluconolactonase
MTKYLEILDDQLELIKRSRRIVVSRIQEAIARRGICTIALAGGSTPKPLYEKLAQENLPWEQIHIFWGDERYVPADHPDSNQRMARQVWLDQVPIPPDNIHPMPTDAADPYLDAATYDATLRAFFGDQTWPAFDIILLGMGDDGHTASLFPQTAALAVSDRLITVGEKQGEPRLTFTVPLINAAHHIIFLVAGHNKQEALQQIFHSEADGFAYPSKLIEPDHGILWWLLDAAAGDRLTPHDTIYQTNPHPAL
>NZ_AP017959.1|WP_096417092.1|1160917_1161754_+|FHA-domain-containing-protein
MISCPNCNHQNPDGAVQCEACYTPLPQAAVCPQCGATVQSNAAFCGQCGFNLKQAVANITSELPPTVIPNPPTAPTSPPELDLNFPEVPDLELPDFPDFFEAEEAANPTVALGTPEPSNFDILETPDSPSFPPEVPLEAEMGFGSAVEMPNASSPSMATSPPVAATQIQVQTASLLHVQTDVSLEIPAHLTVIHIGKPNDTVPPDIDVSGFPNSEVVSRIHADLRQEAGIYYVEDTGSSNGTYINHAPLPVGNRHRLRPGDRLGLGKGDKVTFIFQMS
>NZ_AP017959.1|WP_024544682.1|1161910_1163029_+|NADH-quinone-oxidoreductase-subunit-NuoH
MNSGIDLQGSFIETLQSLGLPHEIAKTIWLPLPLLLMIIGATVGVLVVVWLERKISAAAQQRVGPEYAGPLGVLQPVADGLKLVFKEDVVPAKTDPWLFTLGPALVVIPVFLSYLIVPFGQNLVITDLNVGIFLWISLSSIAPIGLLMSGYSSNNKYALLGGLRAAAQSISYEIPLALAVLAIAMMSNSLSTIDIVEQQSGYGILGWNIWRQPIGFLIFWISALAECERLPFDLPEAEEELVAGYQTEYSGMKFGLFYVGSYVNLVLSALIVSILYLGGWEFPIPLDKLANWLSIDPNTPWLQLITASLGIIMTLVKTYALVFIAVLLRWTLPRVRIDQLLNFGWKFLLPVALVNLLLTAALKLAFPFAFGG

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	1256549 : 1264348	7	Prochlorococcus_phage(33.33%)	tRNA,transposase	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NZ_AP017959|1256549:1264348|DBSCAN-SWA
CCTAGCGGGGAGAAACGGGCACATCCGCATCCTTTACCACTAGCTCACCGGAAGTAAATTCTTTTAGAGCAGCTAAAGGCCAAGCAAAAGCAGCCAACATCAAGCCAAAGGCGAGGGGCACATTGATGATGATTTCTGCCATTGCCGCGTCTTTTTCTTTACGGACAGCGATCAGATAAGAGCGGCCAGCCCAACCAATCCAACCTGCAATGTAGAGGAAGAGAATGCTCGGGATCAAAAATTCACCAGCGTGATCTAAGCGACCATCGACGATGAGGTGGGGCAAACCTTCGGGGCCACAGAGGGCTTCAGAATAGGCTGCGGCCCGGTTTTGACCAGAGTTTGGGTCTGCGGTGGTGTTGCGGAAGTTCTTTGCTCTTTGTTTATAAGCGGCGGACTGACTACAGGGCGTCAGGTGAGAAAGAGAATCTGCTTTCACGGGGGAAGCGAAACCCAGCCACAAAGTTAAAGAGAGAGCAAAGGCGCAAACAACAGCTACGAAACGTTGCATAAGTTTGTTTCCTTTTGTTACAAAATAGTAAAGTTTTTTGTACAAAAGATACGCCAATCCATTTGTACTTTGGAAGCAATATTACTGTGACCAGCGTATCGAGTAAAGGCAAAAAAGGTTAAAGTTGTTAACTTAAATCTAAGTTATACCGATATATGAGCATTGTTTTGGCAATCGAAACAAGTTGTGATGAAACTGCCGTTGCAATTGTTAAAAATCGTAAAGTTCTTGGTAATGTGGTTGCCTCTCAAATTGATATTCACCGGGAATTTGGTGGGGTTGTACCGGAGGTGGCATCACGATATCACCTCGAAAGTATCAATGCTTGTATCGACACCGCCCTTGCACAGGCGGGTTTAGGTTGGCATGAAATTGAGGCGATCGCCACCACCTGTGCGCCGGGATTGGTGGGCGCTCTCCTAGTGGGGGCCGCCGCCGGAAAAACCCTAGCCATGGTACACAACAAGCCCTTTATCGCTGTCCATCACTTAGAAGGTCATATTTACGCTAGTTATTTGAGTCAACCGGAGTTGGAGCCGCCTTTTCTTTGTCTCTTGGTTTCGGGAGGACATACAAGCTTCATTGAGGTGCGCGGTTGCGGTGAGTATGAACTGTTGGGGGAAACCCGCGATGATGCCGCCGGGGAAGCCTTTGATAAGGTGGCGCGGTTACTGAAGGTCGGTTATCCCGGTGGCCCGGTGATCGATCGCCTTGCCAAAACAGGAAATCCCCAAGCCTTTAAATTACCCGAAGGAAAAATTTCTCTCCCTGGGGGCGGCTATCATCCCTATGACTGCAGTTTTAGCGGCCTGAAAACAGCGGTTTTGCGCTTGGTGCAGCAGCTCGAAGCGACGGGCCAAGACATTCCGGTGGCCGACATTGCCGCCAGTTTCCAATACACCGTCGCCCAGGCTTTAACAAAACGGGCAGTCCGCTGTGCGGGCGATCGCCAACTGAAAACCATTGTGGTCGGTGGTGGTGTCGCGGCAAACAGTGGCCTCCGGGAGTCATTGACGACAGCCGCCGAAAAAGCCGGGATTCAAGTTTATTTTCCCCCCTTGAAATTTTGTACCGACAACGCCGCGATGATCGCCTGTGCCGCAGCGGAACATTTCGAGAGAGGCGATCGCTCGTCCTTAGATTTGCCTGTTGCCTCCCGTTTGCCCATCACCCAAGTGCAGACTTTGTATAAGTGAACCTTGAGGAAAAGTTGATTAAGCAAAAACGGCGGTACGGTTACCGTAAACCAAAACGCGGTTTTGTAAATGTAGGCGGACGGCCCGAGACAGGACAATCCGCTCTAAATCTTTCCCTTTGCGAATCAAATCTTTGACATCATCCCGGTGGCTGACCCGCACCACATCCTGTTCGATAATCGGCCCTTCATCGAGATCCTGGGTGACATAGTGGGCCGTTGCGCCAATGATTTTTACGCCCCGCTCGTAGGCCCGGTGGTAGGGTTTCGCCCCCGCAAAGGCAGGCAGAAAAGAATGGTGAATATTGATCACCTGGTTAAATTTCCCCAAAAAATCAGGACTAAGCACCTGCATATATTTAGCGAGGATCACCAGATCGATGTTGTATTCCTTCAGTAGGGCCAGCTGTTTTGCTTCCTGTTCTGCTTTGGTGGCTTTGGTGATCGGGATGTGGTGAAAATCGATGTTGAACTGTTGGGCGATCGCCTCCAGCTCTGGGTGATTACTCATAATCAGAGGGATTTCCGCCTTGAGTTCCTTCGCCTGTTGTCGCCAGAGCAGATCCAAGAGGCAATGGTCCTGTTTCGTCACCCAGATCGCGAGTCGGGGCACTTGGTCAGAAAAATGCAGGCTGTAGGTGGCCCCCAAGGGTTTGGCGATCGCCCCAAAGGCCGGCTCGATCACATCCCGGGGTAGATTGAACCCAGTCAGCTCCCACTCAATGCGCGTTAAAAACAGGCCCACACTAAAATCGGTGTGTTGATCGGCATGGATAATGTTGCCGCCGTTGGCATAGATAAAATTGGCGATTTTCGCAACCAGACCTTGTTGATCCGGACAAGACACCAGAAGAGTAGCAGTGGGCATTGCTGTTTATAAAAGTTAAATTATTCGCAAAACTCTAATATTGTAAGGGTTTCAGCTCCAAAATAAAGACCAGCGGCACAATCTCATCCCTTAGAAATCATGATCCAGCCATGGAATCAAGTGCAACAAACTTTCCAGGCCATTTGGGGCTATACAGACTTTCGGCCACCCCAGGATCAAGTTATTCGTAGCTTATTGTCTGGGCAAGATGCCCTGATTGTGATGCCCACTGGCGGGGGGAAATCCATTTGCTTCCAATTACCTGCGCTATTGCAAACGGGTTTAACCCTCGTCATTTCGCCCCTAGTGGCCCTGATGGAAAATCAAGTGCAGGATCTGCGCGCTAAAGGTCTTCCCGCCCAGGTGCTCCACAGTCAATTGTCAAAGCTGGAGCGGCGGCAAACCCTGACAGCCCTCGAAAAAAAGCAACTGCGGCTCCTGTATCTTTCGCCAGAAACGTTACTCAGCTTGCCAGTGTGGGAACGCCTCATTTGGCCAGATTTACAGATTAACGGCCTGATCCTCGATGAAGCCCATTGTTTGGTGCAGTGGGGCGATACCTTTCGGCCCGCCTATCGTCGTTTGGGGGCTGTGCGCCCTGCCCTGCTCAAGCATAAACCCAAGGGCAGTACCATGGCGATCGCCGCTTTTACGGCCACGGCTGATCCCCAAGCTCAACGGGCGATTTGTCAAACCCTCCAGCTAAAAAGTCCGAAAAAATTTCTCCAGAGCCCCTACCGCCCTAATTTAAACTTGGCCTGTCGCACCATCTGGACACCGAAAGGGAAACGGGATCAGGTGCAAAAATTTATTCGATCCCAGAGCAATCAATCGGGATTGATCTATGTGCGCTCCCGCCAGGATGCGGAAACCCTTGTGACGGAATTACGACAAAATCAACATAAAACAGTCGCTTATCATGCAGGCCTCAGTCCAGGCGATCGCCGCCAACGGGAAAAAGATTGGCTCACGGGGAAACTGCAATTTGTGGTGTGTACCAACGCCTTTGGGATGGGCATCGATAAAGCCGATGTGCGTTGGATTCTCCACTACCATCCCCCCAGTCTGTTGGCGGAATATATCCAAGAAATTGGGCGAGCGGGACGAGACGGGAAAAAGAGTGTAGCCTTGAGTTTGGTCAGTGAAGCCAGTGGTTTGTTTAATCCAGAGGACAAAAATCGGGCCCGTTTCTTTTGGCAAAATCTCCAAAAAACAATTCGTCAAGCGGAAAAGCTCGCCCATAACCTGCCCCCTCAGGGAAATATTGCTGATTTTGATTCTCCCCAAGCCGCCTTAGGTTTGGCGATTCTGCACAGCACAGGCCAACTACACTGGCGAGACCCCTTTACCTATGAACAGCGCTCATCCCCCCATACTCAAACATTTATCCAGCTGAGGACACAACAAGCACAGACGTTCCAGCAAATGCAAAATTTTTGGCCCCATAAAGGCTGTCGCTGGCATTATTTGCTCCAAAGTTTTGGGTTTCCCCAGAAAGCGGGAAATTTTCGTTGTGGCCATTGCGATCGCTGCGAAAAATCTCGATGATCGAAATTAGTGGCATAAGTTCAGGAGAAACCCATGTACGTTCTAATCGGTGGCGCTGGCTTGATGGGGCGCGATCTCGCGAAAACCCTCCAGCGGATGCAGTATACCGTTGCGGTGATTGATACAAACCCTGCCATTTGCCAGGAAGCCCGGGAAAAAATTGGTGTGATGGCCTTTGAAGGAAGTGCCGTTAAAACGAGTGTTTTGATCGAAGCGGGGATCCTTAAAGCCAACGCAGTGATCGCCACCCTCCGAGACGATGCCCTCAACCTGGCCCTGGTGACCCTCTGTAAGCATTATGGCGTCCCCCAAATTATTGTCCGGATGCGCGATCGCGACTTTACTGAACCTTACAAACTGGCCGGGGCGACCCACATTATCAGCACCACAGAATTAGCGATGAATCGGGTGATCAATGCGATCGAATATCCCGAAGTGGATGCGATGATGCACTTTGAACAGGGACAAATTGAAGTCCTGAAGCTTTCCATTCCTGAAAATTGCACCATTGTTAGGCGCAGTATTGCGGAATTGGCCCAGGATCCGCGCTTTCCGGCGGGCACTCTCATTATTGGTTACCAAGCCCACCCCCATGAGGAACTCCACATCCCCAACGGCAATACCCTCCTTGAGGGGGGCTCAACGATTCTGGCCGTGACAAAACCGGAACTCGTCCACCAACTTGTCGATTTCATGGGGTTATGTGGGACTTAATGATCCCGGAGGTTGATAATCTCTTGGTTTAAGGCTTGGATGTAAGGCCGGGCCGTTTCTTCGGTGATCAGTCCTTTGAGGATTGCCCCATTGATCGCACTTTTTTCAGCGAGAAAAAGACGCAGGCGCACCCCATTGAGATAGGCTTGATTCTCAAATTGGCTTAACCTTTGGCTCAGGCGCTGGTTGTAGAGCCCCCGCAGCTCCTCCTCGGCATTGGCAATGCGGGCCTGGTAAGTGGCAAACAGTTCCTCATAGAGAAATTTTGGGAGGCTGCCGCTCTGTAATAACTCCTTGAGTTCCTCCTGGGCCGATTTTGCGGCAATCAAGTTCAATTGCAGGGTTTCTAAGCGTTGGCGCACAGGAGAAGGCTTTGCCAGCTGGAGTTTTTTCACGCACCAAGGCAGACTTAGCCCTTGGCCAATTAGAGACACCAAAACGGTACTAAACACCAGAGTGACCACCTGCGATCGCCCGGCGAGGGTCAAGGGTAAACCAAGGGCGAGGGCCATAGATAGAGAGCCTTTCACATTCCCGAGAATCAACACATGTTGCCAACGAAGCGGCAGGGGGCGGTCAAAAAACTTCAGCCCCCAGAGCAGCGGATAAATCGAAAAAATTCGCCCCGTTTGGTAGGCCAAAATCGCCAACAGCGCTGCTGGAATACTCTGCAGAAGGGCCTGGGGTTCCACTTCGATGCCCACGAATAGGAAAATAAATGTATTGACCCCAAAACCCGCATATTCCCAAAAATTTAACAGAGTAATCGTCATGGAGCCAGAGCTTTCCCGCAGGGCAACATTACCAATTAGCAGCCCCGCAATCAGCACGGCGATCGCACTGGAAACCCCGAGCAATTGCCCAATTTGGAATGTGCCAAGGGACACTGCCACAGTCAACAAAATATTACTAAGGGGATCATCCAACTGCCGGAACAGGCCAATACAGAGATAGCCTAAACCCAAGCCCAACAGACCGCCCCCCACAAAGGCAATCAGGATTTGTTCAATGCCTTGGCCAACGCTAAAAGAACCCTGTAGGTGGATCGTCGTAACAACATTCAGCAAAACCAGGGCAATCCCGTCATTAAATAAACTTTCTCCTTCCACAATGGTGGCCAAGCGTCCCGGCACTGGCACCGTCCGAAAAGCCGCAATGACAGAAACTGTATCAGTGATCGTCAAAATGACTCCCACAGCACAGGCCGTTAACCAAGCCAGATCTAAACTAACCTTGAGCAAATAGGCGGTGATCGTGGCAGCCAAGAGAACCCCTGGCCCCGCTAAAAGAGTAATCGGTTTAATGGTGCTGCGTAACCGACTGATATCTGTATTGATCGCGGCCTCAAAGATCAAAATCGGCAGAAATAAATTCAAAATCACATCAGGATTTAAACCAATGGCCTCTGCTAGTAGCTGTCTGGGAATTAACAAACCCGCGAGCACAAGCCCAATCACATAGGGAATCCTCAGCCAGCGAGTCACCAGAGCTACCACCGTCGCGACTAGCAGTAACAAAATCAAGGTATCGACCAGTCCCGTAAAAGCATTATTCGGCAGAGAAACCGCTTGTCCGAACAGGAAGCTATGGCGCACAATAATCAGGTGGGGATCAAGCACAGTGAGAGATATCCTTAGGGATAAAAAGACCGCAATATAGTCATCAAAAATCTCCGAGAGATCCTGTCTTAAAATGACAGGGAGTAATACGAGTGTCAGTCAATCCGTTCGATGCTGCGAAGACTGACAAATAATCTATATTGCTCACAGAATCAAGCATTATAATGTGAGTATGACACAACGTGCTTTTAAGTATCGCTTCTATCCTACCCCTGAACAGGAATCCCTGTTGAGACGGACGATGGGCTGTACTCGTTTGGTCTACAATCGCGCCCTTGCCGTGAGAACCCAGGCTTGGTCCGAAGAGAAAAAACAAGTTGGCTACAGCGATACTTCGGCAATGCTGACGGCTTGGAAAAAGCAAGATGACCTCCAATTTTTGAATGAGGTGAGCTGTGTCCCCTTGCAACAGGGATTGAGACATCTTCAGAAAGCATTCCGTAACTTTTTTCAAGGACGGGCCAAATACCCAACCTTCAAGAAAAAACGGAACGGTGGCAGTGCAGAGTTTACGAAATCTGCGTTCAAGTGGAGGGATGGGCAAGTTTTTCTGGCCAAGTGTTCTGAGCCACTGGCCATCCGTTGGAGCCGAGCATTACCCAAGGGCGCAAATCCCTCGACAATTACCGTGAAGCTTTCGCCGGCTGGAAGATGGACAATCTCTCTGTTGGTGGATGTTGATGTCGACCCATTGCCGCCATCCCCAAATCAAATTGGCATTGATTTGGGCGTGACCAGTTTGGCGGCCCTGAGCAATGGAGATAAGATTGCGAATCCCAAAAACTTCAATACTAAACGCCGCAAACTGAAGAAAGCTCAGAAGGCATTGGCACGAAAGCAGAAAGGGTCGAACAATCGCCACAAGGCTCGTTTAAAAGTGGCTAAGGTGCATCAGGAAATCGCTGATGCCAGAAAGGATTTTCTTCACAAGCTGACGACTCGATGGGTACGCGAAAACCAAACGATCGCCGTTGAGGACTTGGTGGTGAAGAACATGGTAAAGAACCAAAAACTGGCGCTCTCGATTAGTGATGCGAGTTGGGGCGAGCTGGTCAGACAACTTGAGTACAAGTGCGACTGGTATGGCCGCAGGTTGATCAAGATTGACCGCTGGTTTCCGAGTTCTAGGCGGTGTGGTAGTTGTGGTCACATTATTGAAAAACTGCCGTTAAATGTCCGTGCATGGGATTGCCTCAACTGTGGGGCACACCATGACCGGGATATCAACGCTGCCAAAAACATTCTTGCCGCAGGGCTTGCGGTGAAAGTCTGTGGAGCAAACGTAAGACCAGAAAGGCATAAATCTGATGGCAGTTGCAATGAAACAGAAAGGTCTAGGAAGTGA

Protein sequences of DBSCAN-SWA_1

>NZ_AP017959|1256549:1264348|1257214_1258255_+|WP_096417259.1|tRNA|DBSCAN-SWA
MSIVLAIETSCDETAVAIVKNRKVLGNVVASQIDIHREFGGVVPEVASRYHLESINACIDTALAQAGLGWHEIEAIATTCAPGLVGALLVGAAAGKTLAMVHNKPFIAVHHLEGHIYASYLSQPELEPPFLCLLVSGGHTSFIEVRGCGEYELLGETRDDAAGEAFDKVARLLKVGYPGGPVIDRLAKTGNPQAFKLPEGKISLPGGGYHPYDCSFSGLKTAVLRLVQQLEATGQDIPVADIAASFQYTVAQALTKRAVRCAGDRQLKTIVVGGGVAANSGLRESLTTAAEKAGIQVYFPPLKFCTDNAAMIACAAAEHFERGDRSSLDLPVASRLPITQVQTLYK
>NZ_AP017959|1256549:1264348|1263175_1264348_+|WP_096417271.1|transposase|DBSCAN-SWA
MTQRAFKYRFYPTPEQESLLRRTMGCTRLVYNRALAVRTQAWSEEKKQVGYSDTSAMLTAWKKQDDLQFLNEVSCVPLQQGLRHLQKAFRNFFQGRAKYPTFKKKRNGGSAEFTKSAFKWRDGQVFLAKCSEPLAIRWSRALPKGANPSTITVKLSPAGRWTISLLVDVDVDPLPPSPNQIGIDLGVTSLAALSNGDKIANPKNFNTKRRKLKKAQKALARKQKGSNNRHKARLKVAKVHQEIADARKDFLHKLTTRWVRENQTIAVEDLVVKNMVKNQKLALSISDASWGELVRQLEYKCDWYGRRLIKIDRWFPSSRRCGSCGHIIEKLPLNVRAWDCLNCGAHHDRDINAAKNILAAGLAVKVCGANVRPERHKSDGSCNETERSRK
>NZ_AP017959|1256549:1264348|1256549_1257059_-|WP_024544597.1|DBSCAN-SWA
MQRFVAVVCAFALSLTLWLGFASPVKADSLSHLTPCSQSAAYKQRAKNFRNTTADPNSGQNRAAAYSEALCGPEGLPHLIVDGRLDHAGEFLIPSILFLYIAGWIGWAGRSYLIAVRKEKDAAMAEIIINVPLAFGLMLAAFAWPLAALKEFTSGELVVKDADVPVSPR
>NZ_AP017959|1256549:1264348|1260703_1261384_+|WP_024544594.1|DBSCAN-SWA
MYVLIGGAGLMGRDLAKTLQRMQYTVAVIDTNPAICQEAREKIGVMAFEGSAVKTSVLIEAGILKANAVIATLRDDALNLALVTLCKHYGVPQIIVRMRDRDFTEPYKLAGATHIISTTELAMNRVINAIEYPEVDAMMHFEQGQIEVLKLSIPENCTIVRRSIAELAQDPRFPAGTLIIGYQAHPHEELHIPNGNTLLEGGSTILAVTKPELVHQLVDFMGLCGT
>NZ_AP017959|1256549:1264348|1261380_1263003_-|WP_096417268.1|DBSCAN-SWA
MLDPHLIIVRHSFLFGQAVSLPNNAFTGLVDTLILLLLVATVVALVTRWLRIPYVIGLVLAGLLIPRQLLAEAIGLNPDVILNLFLPILIFEAAINTDISRLRSTIKPITLLAGPGVLLAATITAYLLKVSLDLAWLTACAVGVILTITDTVSVIAAFRTVPVPGRLATIVEGESLFNDGIALVLLNVVTTIHLQGSFSVGQGIEQILIAFVGGGLLGLGLGYLCIGLFRQLDDPLSNILLTVAVSLGTFQIGQLLGVSSAIAVLIAGLLIGNVALRESSGSMTITLLNFWEYAGFGVNTFIFLFVGIEVEPQALLQSIPAALLAILAYQTGRIFSIYPLLWGLKFFDRPLPLRWQHVLILGNVKGSLSMALALGLPLTLAGRSQVVTLVFSTVLVSLIGQGLSLPWCVKKLQLAKPSPVRQRLETLQLNLIAAKSAQEELKELLQSGSLPKFLYEELFATYQARIANAEEELRGLYNQRLSQRLSQFENQAYLNGVRLRLFLAEKSAINGAILKGLITEETARPYIQALNQEIINLRDH
>NZ_AP017959|1256549:1264348|1258273_1259122_-|WP_096417261.1|DBSCAN-SWA
MPTATLLVSCPDQQGLVAKIANFIYANGGNIIHADQHTDFSVGLFLTRIEWELTGFNLPRDVIEPAFGAIAKPLGATYSLHFSDQVPRLAIWVTKQDHCLLDLLWRQQAKELKAEIPLIMSNHPELEAIAQQFNIDFHHIPITKATKAEQEAKQLALLKEYNIDLVILAKYMQVLSPDFLGKFNQVINIHHSFLPAFAGAKPYHRAYERGVKIIGATAHYVTQDLDEGPIIEQDVVRVSHRDDVKDLIRKGKDLERIVLSRAVRLHLQNRVLVYGNRTAVFA
>NZ_AP017959|1256549:1264348|1259221_1260670_+|WP_096417265.1|DBSCAN-SWA
MIQPWNQVQQTFQAIWGYTDFRPPQDQVIRSLLSGQDALIVMPTGGGKSICFQLPALLQTGLTLVISPLVALMENQVQDLRAKGLPAQVLHSQLSKLERRQTLTALEKKQLRLLYLSPETLLSLPVWERLIWPDLQINGLILDEAHCLVQWGDTFRPAYRRLGAVRPALLKHKPKGSTMAIAAFTATADPQAQRAICQTLQLKSPKKFLQSPYRPNLNLACRTIWTPKGKRDQVQKFIRSQSNQSGLIYVRSRQDAETLVTELRQNQHKTVAYHAGLSPGDRRQREKDWLTGKLQFVVCTNAFGMGIDKADVRWILHYHPPSLLAEYIQEIGRAGRDGKKSVALSLVSEASGLFNPEDKNRARFFWQNLQKTIRQAEKLAHNLPPQGNIADFDSPQAALGLAILHSTGQLHWRDPFTYEQRSSPHTQTFIQLRTQQAQTFQQMQNFWPHKGCRWHYLLQSFGFPQKAGNFRCGHCDRCEKSR

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024544597.1|1256549_1257059_-	photosystem I reaction center subunit III	A0A0K0KWQ1	Prochlorococcus_phage	1.8e-16	51.1
WP_096417259.1|1257214_1258255_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	5.0e-69	43.0
WP_096417261.1|1258273_1259122_-	formyltetrahydrofolate deformylase	E3SNR5	Prochlorococcus_phage	8.6e-19	36.8
WP_096417265.1|1259221_1260670_+	ATP-dependent DNA helicase RecQ	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	1.8e-48	36.1
WP_024544594.1|1260703_1261384_+	TrkA family potassium uptake protein	NA	NA	NA	NA
WP_096417268.1|1261380_1263003_-	sodium:proton antiporter	A0A2H4J178	uncultured_Caudovirales_phage	5.5e-14	29.7
WP_096417271.1|1263175_1264348_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A0R8V9X2	Thermobifida_phage	5.9e-127	61.5

3. NZ_AP017963

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	0 : 3736	2	Clostridium_virus(50.0%)	NA	NA
DBSCAN-SWA_2	9726 : 13158	4	Aeribacillus_phage(33.33%)	NA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NZ_AP017963|0:3736|DBSCAN-SWA

Protein sequences of DBSCAN-SWA_1

>NZ_AP017963|0:3736|319_1234_-|WP_096419277.1|DBSCAN-SWA
MQYNKPPLTFQGQISLLQSRGLIIKDLGFAEQTLKRISYYRLSAYLHFFQEQNSPNHQYRSGTTFESVLNLYKFDKSLRMLVFNATESIEVAIRTQMIYQLSHEYGSHWYVDSALFDDVQKHQELISFITQYCNSRKVEEFIEHYRNKYTHPPLPPSYMALEIISFGQLSRMYANLKPCNARSAVHNYFQIPHKFFISWLRSLSHIRNICAHHSRLWNVQLGESPKLPNRLQEDWLSQAIITEINQNNRRKIFKGLCCIQYLLDRIKPEHKFVKHLQVTFDMYPDVDIKNMGFPESWKSQALWQ
>NZ_AP017963|0:3736|2320_3736_-|WP_096419278.1|DBSCAN-SWA
MDKFQLRPYQSEMVSEILSSLSHHDSVVGQLPTGGGKTIILSAIAHEFIKRGSPVLLLSHREELVIQGAEKLAAVSGEPVGIIKANYPDNGDRLIQSASILSLVRRLHRYHPERFGAIIIDECHHAAAATYRKVLEHFDAAYVLGFSATPTRADGAGLDDLFSHMVTGPSIRDLIDAGHLSPYRYLAAAQSMVIKGAKVRRGDYTSKSLAALNPRDQLAADLVSSYRQHCDGLRCLVFAIDRDYSKATAAMYQAAGIAAIHLDGKTPSEVRKTALEAFQAGEIKVVCNVGLFTEGTDIPAIEALQLARPTKSLPLFLQMVGRGLRPFPGKNEAIILDHADNWIEHGLPCGDRQWTLEGIAKPKGRKRYVKTAQGEIVEWEPVEILETKVTTREITPNSMAIAPALDGFWKTALDELLDERKTNGYKPGWVGFRLGELAPPLEVWQAAAPILGYQPGWAWHQWKKYQSRNVA

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096419277.1|319_1234_-	Abi family protein	A3QSC6	Clostridium_virus	3.7e-36	31.8
WP_096419278.1|2320_3736_-	DEAD/DEAH box helicase	A0A2I5ARD8	Synechococcus_phage	1.2e-65	40.3

Sequences of DBSCAN-SWA_2

Nucleotide sequences of DBSCAN-SWA_2

>NZ_AP017963|9726:13158|DBSCAN-SWA
CTCATGCCTGTAGCCGCTCTTCTCGCTTGATGATGTTGCTCACTGTCATCGGATACCACTTACCACCCCGCGCGGTTTGGATGCCCTCACCATTGAGATGATCGGCGATCGCCTGTAGGGTTTTCCCTTCATTGCGTAGCTTTTGGATCAGCTCAACGGCTTTATATTCCTTGGTTTTAGCCAGCTTCTTACCAGTAACCCTGTAGCCAAAACCTACACCCCCGATATGTTCACCTTGGGATTTTTTGTGTTGTAGAGCCGCGCTAGTCCTTTCTCCAATGGTTTCTCTCTCCCATTGAGCCACACTCATCAAGACATTGAGAACCAGGCGGCCCGAGGCGGTGCGGGTGTCTACCTGCTCAGATACAGACATCAGAGAGAATTTATCTGCGAAATAATTCTCTAGCAGCCAATCGAGATCCTTAACAGAACGGGTAAGGCGATCGAGCTTAACGATTACCATCGCTTTCACATCGCCACTGTCTAACATTCCAAGGGCTTTCTCCAAACCAGGGCGCTGTAGGCTTTTCGCGCTCACCCCGGCATCAATGACAATCTCTACCAGTTCGACATCGTACAACCCGGCATAGGCTTCTAGTTTAGCCTTCTGGGCATCTAGGCTCACGCCCTGGGTTGCCTGCTCTTCTGTGCTGACTCTGATGTATCCGATGGCTTTCATGGCTTGGGTTTAATTGTTAGATTGATCCTTAAAAAAATAATACCTTAAATATATAAAGGTTTAATACCTTAATTGAATTACTGGATGCTTGAAGTCTTGAAATCCCAAGTATCCTAGCGATATAAAAGAAAACCCATAAAGGTTTAATGCCTTAATGCTTTAATGATTATTTCTGTATTCAATTTCAAAGGGGGGGTAGGAAAATCTACTACCGTCGCCAACTTAGGGGCAGCCCTAGCCACCCAAAAACGAAAAGTCTTAGTAATTGATCTTGATGCTCAAAGAACATTAAGTTTCTCTCTGGCAACGGAGGGAAAATACCCAACAGTGATCGATTGGCTTAATGGATCTAACCAAGCGATTGAAACCAGTCGTCATAACCTCTGGGCGATCGCCGGAAGTTTTGAGATTCTAAACTACCCGATGACTGAAGGCTTAATGGCAAAAACCCTTAAACGTTTAATAGGTTATGATGTGATTCTATTAGACTGCCCGCCTGCGATTAACGCGATTTCAGTGGAAGCGATTTTGAATTGCGATCGCCTCATTATCCCCATCGTCTCCGAGCCGGCAGTGATCAAAGGATTAGCCGAAGCGGTAGAGCTGGTGAGGGAGGAAGATCCTAATTTGCCTATCGATGTCCTTCGGGGTCGTTACCGTTCGCGGTTAGTGATTACCAAGGAATATGACGGGATGCTCGAAAACGGAGCCAAGGATCTAGGGTTCAATCTGCTCAAAACGACGATTCCCGAAAATGTGGCGATCGCCGAAGCGGTTTCTACCCAAGTCTCGGTACTGGATTACGCGAAAAATAGTATCGGAGCCAAAGCCTTCAGAAAGTTAGCAAAGGAAATTATTCATGGGTAGACTCAAACAAACGGGCCTCGGAGATAAATCTGGGTTAAGCCAAGACGGTATGGCGAAACCTGAACGCAAAACTTCTGGACGGAAACAGACAGAAGTCTTAGTACCCATCAATATCAAAATCCCTAGGGCATCTAAGCAATGGCTTGCGGATAAAGCGCAACAGGTGAGGGATAACAACACTGATCCTGTTCCCCCAAAGGAGCGGGTTTACCCTCAACATCTGATCAATCTGGCGATCGCCCTGCTCCAAGATACGGATATCGATTGGTCTAGCGTCCGCAGTATCCAAGATTTAGAGAGGCAATTAGACCTATAAAAGTCTAAGAGGTTAAAGATTTTAACCTTAGTTGCCATGGCGATCGTCGTCTCGAATCTTCATAATAATTGGAGCTGTAAAAGGAATCGGGTAATATTTCTGGGTTCTCTATTCCCCCGGCCATGTTTGAGCAGACCTTTAAAAATATTGATGATGTGCTTCGGAAAGAGGCGGGCTGTGCGACGGAGCTTGATTATGCGGAACAGATTTCCTGGATTCTCTTTCTGAAATATTTGGATGATTTGGAGACGGATCGGGAAAGTAAGGCTCTTTTAACTGGGGAAACTTATGAGCCGTTATTGGATGAGCCGTATCGCTGGAAATCATGGGCTTACCCAAAAGATGAAAAAGGGGAATTATTGAAAACAGCACCCGTTGGGCAAGATCTGATCGAGTTTGTTGATAAGGAACTATTTCCTTATTTCCGGGCATTTAAGGACTACGTAGAACCGGGCACTTTCGGGGCGAAGATTGGTGAAATCTTTTCGGGGGTCAGCAATAAATTTCAGAGTGGTTACAATCTCCGAGACGTTTTAGAAAGCATTGATGGGCTTCAGTTTCAGACCCAGCAGGAAAAACATGAACTGTCTGACCTCTACGAAACGCGCATCAATAACATGGGAAATGCGGGACGTAATGGTGGGGAATATTACACGCCACGTCCTCTGATTCGGGCAATGATTAGGGTGATTAAGCCGCAGCTTGGGGAGACGATCTACGATGGGGCGTGCGGTTCGGCGGGGTTCCTTTGTGAAGCCTATGAGTTTTTGCGTCCGATGGTGAACAGTGCGGCGGAATTGGAACGACTCCAAACGGCGACGCTCTACGGTAAGGAAAAGAAGGGGTTAGCCTACATCATCGGGGTGATGAATATGATCCTCCATGGGATCGAGACGCCAAATATTACCCAAGCAAATACCCTTGCTGAGAATATCCAAGATTTTCAAGAGAAGGATCGCTTCGATGTGATCCTTGCTAATCCGCCGTTTGGGGGTAAGGAACGGGCGGAAATCAAGCAAAATTTCACGATCTCCACAGGGGAGACGGCATTTCTATTTCTACAGCATTTTATTAAGCGGCTTAAGGCCGGAGGTCGGGCGGCGATCGTCATTAAGAATACGTTCCTGTCGAATGCGGATAATGCGTCACGGGCGTTACGGCAGGAGCTTACGTCGTCCTGTAATCTCCATACGGTGTTGGATTGTCCGGCGAAAACGTTCCTAGGGGCGGGGGTGAAGACGGTTGTCCTATTTTTTGAGAAGGGGAAACCGACGGAAAAAATTTGGTTTTATCAGCTTGATGTGGGTCGGAGTCTGGGGAAAACGAATCCGCTCAATGATGATGATCTAAAGGAATTTGTCGAGTTTCAATCAACTTTTAAGGAGTCGGAACGGTCTTGGTTTTTGGATCTGAAGGATGTTGACCCGGAATCGTTTGATCTGTCGGTAAAGAATCCGAATGCGCCGGAGGATGACCCGTTACGGGAACCGGAGGAGATTTTAGCGGAAATTGCAGATCTTGATCAAGAAAGTGCGGAAATTTTAGCGGCGATCGGGGAGATGTTGGCATGA

Protein sequences of DBSCAN-SWA_2

>NZ_AP017963|9726:13158|11263_11587_+|WP_096419285.1|DBSCAN-SWA
MGRLKQTGLGDKSGLSQDGMAKPERKTSGRKQTEVLVPINIKIPRASKQWLADKAQQVRDNNTDPVPPKERVYPQHLINLAIALLQDTDIDWSSVRSIQDLERQLDL
>NZ_AP017963|9726:13158|10566_11271_+|WP_096419284.1|DBSCAN-SWA
MIISVFNFKGGVGKSTTVANLGAALATQKRKVLVIDLDAQRTLSFSLATEGKYPTVIDWLNGSNQAIETSRHNLWAIAGSFEILNYPMTEGLMAKTLKRLIGYDVILLDCPPAINAISVEAILNCDRLIIPIVSEPAVIKGLAEAVELVREEDPNLPIDVLRGRYRSRLVITKEYDGMLENGAKDLGFNLLKTTIPENVAIAEAVSTQVSVLDYAKNSIGAKAFRKLAKEIIHG
>NZ_AP017963|9726:13158|11709_13158_+|WP_096419286.1|DBSCAN-SWA
MFEQTFKNIDDVLRKEAGCATELDYAEQISWILFLKYLDDLETDRESKALLTGETYEPLLDEPYRWKSWAYPKDEKGELLKTAPVGQDLIEFVDKELFPYFRAFKDYVEPGTFGAKIGEIFSGVSNKFQSGYNLRDVLESIDGLQFQTQQEKHELSDLYETRINNMGNAGRNGGEYYTPRPLIRAMIRVIKPQLGETIYDGACGSAGFLCEAYEFLRPMVNSAAELERLQTATLYGKEKKGLAYIIGVMNMILHGIETPNITQANTLAENIQDFQEKDRFDVILANPPFGGKERAEIKQNFTISTGETAFLFLQHFIKRLKAGGRAAIVIKNTFLSNADNASRALRQELTSSCNLHTVLDCPAKTFLGAGVKTVVLFFEKGKPTEKIWFYQLDVGRSLGKTNPLNDDDLKEFVEFQSTFKESERSWFLDLKDVDPESFDLSVKNPNAPEDDPLREPEEILAEIADLDQESAEILAAIGEMLA
>NZ_AP017963|9726:13158|9726_10404_-|WP_096419283.1|DBSCAN-SWA
MKAIGYIRVSTEEQATQGVSLDAQKAKLEAYAGLYDVELVEIVIDAGVSAKSLQRPGLEKALGMLDSGDVKAMVIVKLDRLTRSVKDLDWLLENYFADKFSLMSVSEQVDTRTASGRLVLNVLMSVAQWERETIGERTSAALQHKKSQGEHIGGVGFGYRVTGKKLAKTKEYKAVELIQKLRNEGKTLQAIADHLNGEGIQTARGGKWYPMTVSNIIKREERLQA

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096419283.1|9726_10404_-	recombinase family protein	A0A1L2JY12	Aeribacillus_phage	4.1e-32	37.7
WP_096419284.1|10566_11271_+	ParA family protein	E2ELL2	Clostridium_phage	2.2e-07	27.4
WP_096419285.1|11263_11587_+	hypothetical protein	NA	NA	NA	NA
WP_096419286.1|11709_13158_+	N-6 DNA methylase	J7I0U9	Acinetobacter_phage	2.3e-24	27.3

4. NZ_AP017962

CRISPR-Cas detection and classification

Crispr_ID: NZ_AP017962_1

• CRISPR_ID: NZ_AP017962_1
• CRISPR_location: 52392-52863
• CRISPR_type: Unclear
• Repeat_type: I-A,I-B,II-B
• Spacer_info: 6 spacers
• Cas_protein_info: cas2,cas1,cas5,cas7,cas8b3,cas3,WYL

Consensus repeat of NZ_AP017962_1

Consensus_repeat	Method
GGTATCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	CRISPRCasFinder
GTATCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	PILER-CR
GTATCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	CRT

spacers of NZ_AP017962_1

>1.1|52429|33|NZ_AP017962|CRISPRCasFinder
CACCTTCCACGGCACGAAACAAGGCTATGAAGT
>1.2|52499|35|NZ_AP017962|CRISPRCasFinder
CAAGGGCAATTAAACCTTGAGGAGGACGAGGGGAA
>1.3|52571|35|NZ_AP017962|CRISPRCasFinder
TTGGCGAGGAAGTTTTTTCGCCGTGCCGATAAATG
>1.4|52643|36|NZ_AP017962|CRISPRCasFinder
ATCGCTACGTTTATATTCAGGCCCAAGGGCGACCGG
>1.5|52716|38|NZ_AP017962|CRISPRCasFinder
TGCATCACAACATCATATTTAGCCGGAGCCTTGGGAAA
>1.6|52791|36|NZ_AP017962|CRISPRCasFinder
TCAAAAAAAGACTAACAAAAACCAAGGTCATCAGAA
>1.7|52429|34|NZ_AP017962|PILER-CR,CRT
CACCTTCCACGGCACGAAACAAGGCTATGAAGTG
>1.8|52499|36|NZ_AP017962|PILER-CR,CRT
CAAGGGCAATTAAACCTTGAGGAGGACGAGGGGAAG
>1.9|52571|36|NZ_AP017962|PILER-CR,CRT
TTGGCGAGGAAGTTTTTTCGCCGTGCCGATAAATGG
>1.10|52643|37|NZ_AP017962|PILER-CR,CRT
ATCGCTACGTTTATATTCAGGCCCAAGGGCGACCGGA
>1.11|52716|39|NZ_AP017962|PILER-CR,CRT
TGCATCACAACATCATATTTAGCCGGAGCCTTGGGAAAC
>1.12|52791|37|NZ_AP017962|PILER-CR,CRT
TCAAAAAAAGACTAACAAAAACCAAGGTCATCAGAAA

CRISPR arrays and Neighbor proteins around NZ_AP017962_1

CRISPR arrays

The CRISPR arrays of NZ_AP017962_1

>merge|NZ_AP017962|1|52392-52863|CRISPRCasFinder,PILER-CR,CRT
TGTATCCAAACCATTGATGCCGTAAGGCGTTGAGCACCACCTTCCACGGCACGAAACAAGGCTATGAAGTGGTATCCAAACCATTGATGCCGTAAGGCGTTGAGCACCAAGGGCAATTAAACCTTGAGGAGGACGAGGGGAAGGTATCCAAACCATTGATGCCGTAAGGCGTTGAGCACTTGGCGAGGAAGTTTTTTCGCCGTGCCGATAAATGGGTATCCAAACCATTGATGCCGTAAGGCGTTGAGCACATCGCTACGTTTATATTCAGGCCCAAGGGCGACCGGAGTATCCAAACCATTGATGCCGTAAGGCGTTGAGCACTGCATCACAACATCATATTTAGCCGGAGCCTTGGGAAACGTATCCAAACCATTGATGCCGTAAGGCGTTGAGCACTCAAAAAAAGACTAACAAAAACCAAGGTCATCAGAAAGTATCCAAACCATTGATGCCGTAAGGCGTTGAGCAC

>NZ_AP017962|1|1|52392-52863|CRISPRCasFinder
TGTATCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	CACCTTCCACGGCACGAAACAAGGCTATGAAGT
GGTATCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	CAAGGGCAATTAAACCTTGAGGAGGACGAGGGGAA
GGTATCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	TTGGCGAGGAAGTTTTTTCGCCGTGCCGATAAATG
GGTATCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	ATCGCTACGTTTATATTCAGGCCCAAGGGCGACCGG
AGTATCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	TGCATCACAACATCATATTTAGCCGGAGCCTTGGGAAA
CGTATCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	TCAAAAAAAGACTAACAAAAACCAAGGTCATCAGAA
AGTATCCAAACCATTGATGCCGTAAGGCGTTGAGCAC

>NZ_AP017962|1|1|52393-52863|PILER-CR
GTATCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	CACCTTCCACGGCACGAAACAAGGCTATGAAGTG
GTATCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	CAAGGGCAATTAAACCTTGAGGAGGACGAGGGGAAG
GTATCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	TTGGCGAGGAAGTTTTTTCGCCGTGCCGATAAATGG
GTATCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	ATCGCTACGTTTATATTCAGGCCCAAGGGCGACCGGA
GTATCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	TGCATCACAACATCATATTTAGCCGGAGCCTTGGGAAAC
GTATCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	TCAAAAAAAGACTAACAAAAACCAAGGTCATCAGAAA
GTATCCAAACCATTGATGCCGTAAGGCGTTGAGCAC

>NZ_AP017962|1|1|52393-52863|CRT
GTATCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	CACCTTCCACGGCACGAAACAAGGCTATGAAGTG
GTATCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	CAAGGGCAATTAAACCTTGAGGAGGACGAGGGGAAG
GTATCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	TTGGCGAGGAAGTTTTTTCGCCGTGCCGATAAATGG
GTATCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	ATCGCTACGTTTATATTCAGGCCCAAGGGCGACCGGA
GTATCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	TGCATCACAACATCATATTTAGCCGGAGCCTTGGGAAAC
GTATCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	TCAAAAAAAGACTAACAAAAACCAAGGTCATCAGAAA
GTATCCAAACCATTGATGCCGTAAGGCGTTGAGCAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP017962.1|WP_030008038.1|57784_58066_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl|CDD|226079
NZ_AP017962.1|WP_096419269.1|56634_57345_+|hypothetical-protein	unknown	unknown	unknown
NZ_AP017962.1|WP_096419260.1|47173_48034_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl|CDD|187818
NZ_AP017962.1|WP_096419258.1|43344_45639_+|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl|CDD|224124
NZ_AP017962.1|WP_096419270.1|58258_58573_-|hypothetical-protein	unknown	unknown	unknown
NZ_AP017962.1|WP_096419276.1|58578_64386_-|DEAD/DEAH-box-helicase-family-protein	unknown	unknown	gnl|CDD|372771
NZ_AP017962.1|WP_096419262.1|48276_48663_+|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl|CDD|350220
NZ_AP017962.1|WP_096419268.1|53866_56632_+|hypothetical-protein	unknown	unknown	gnl|CDD|274279
NZ_AP017962.1|WP_096419266.1|52998_53520_+|hypothetical-protein	unknown	unknown	unknown
NZ_AP017962.1|WP_096419257.1|41715_42693_+|WYL-domain-containing-transcriptional-regulator	WYL	COG2378_WYL_CAS-I:CAS-III	gnl|CDD|379100
NZ_AP017962.1|WP_096419275.1|51843_52137_+|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl|CDD|378256
NZ_AP017962.1|WP_096419265.1|50182_51841_+|type-I-MYXAN-CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|274899
NZ_AP017962.1|WP_024546922.1|57461_57776_-|HigA-family-addiction-module-antidote-protein	unknown	unknown	gnl|CDD|274228
NZ_AP017962.1|WP_096419261.1|48049_48280_+|hypothetical-protein	unknown	unknown	unknown
NZ_AP017962.1|WP_096419267.1|53525_53867_+|hypothetical-protein	unknown	unknown	unknown
NZ_AP017962.1|WP_096419263.1|48679_49309_+|CRISPR-associated-protein-Cas5	cas5	cd09688_cas5_CAS-I-B	gnl|CDD|187819
NZ_AP017962.1|WP_096419264.1|49327_49588_+|hypothetical-protein	unknown	unknown	unknown
NZ_AP017962.1|WP_096419259.1|45635_47129_+|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1	cas8b3	cd09713_cas8b3_CAS-I-B	gnl|CDD|132524

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_AP017962.1|WP_096419265.1|50182_51841_+|type-I-MYXAN-CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	4.7e-90	296.5	0.0
NZ_AP017962.1|WP_096419257.1|41715_42693_+|WYL-domain-containing-transcriptional-regulator	WYL	COG2378_WYL_CAS-I:CAS-III	3.3e-43	143.1	3.5
NZ_AP017962.1|WP_096419258.1|43344_45639_+|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	6.5e-41	135.2	0.0
NZ_AP017962.1|WP_096419260.1|47173_48034_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	2.8e-34	113.4	0.2
NZ_AP017962.1|WP_096419263.1|48679_49309_+|CRISPR-associated-protein-Cas5	cas5	cd09688_cas5_CAS-I-B	4e-47	155.0	0.0
NZ_AP017962.1|WP_096419275.1|51843_52137_+|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	7.4e-22	72.3	0.2
NZ_AP017962.1|WP_096419259.1|45635_47129_+|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1	cas8b3	cd09713_cas8b3_CAS-I-B	5.6e-42	138.1	0.1

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_AP017962.1|WP_030008038.1|57784_58066_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl|CDD|226079	COG3549, HigB, Plasmid maintenance system killer protein [General function prediction only].	8.16039e-36
NZ_AP017962.1|WP_096419260.1|47173_48034_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl|CDD|187818	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Cst2/DevR family.	2.801e-34
NZ_AP017962.1|WP_096419258.1|43344_45639_+|CRISPR-associated-helicase/endonuclease-Cas3	gnl|CDD|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	5.78707e-36
NZ_AP017962.1|WP_024546922.1|57461_57776_-|HigA-family-addiction-module-antidote-protein	gnl|CDD|274228	TIGR02607, Virulence-associated_protein_I, addiction module antidote protein, HigA family. Members of this family form a distinct clade within the larger family HTH_3 of helix-turn-helix proteins, described by pfam01381. Members of this clade are strictly bacterial and nearly always shorter than 110 amino acids. This family includes the characterized member HigA, without which the killer protein HigB cannot be cloned. The hig (host inhibition of growth) system is noted to be unusual in that killer protein is uncoded by the upstream member of the gene pair. [Regulatory functions, DNA interactions, Regulatory functions, Protein interactions, Mobile and extrachromosomal element functions, Other].	7.88061e-35
NZ_AP017962.1|WP_096419276.1|58578_64386_-|DEAD/DEAH-box-helicase-family-protein	gnl|CDD|372771	pfam13871, Helicase_C_4, C-terminal domain on Strawberry notch homolog. Strawberry notch proteins carry DExD/H-box groups upstream of this domain. The function of this domain is not known. These proteins promote the expression of diverse targets, potentially through interactions with transcriptional activator or repressor complexes.	1.49899e-16
NZ_AP017962.1|WP_096419262.1|48276_48663_+|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl|CDD|350220	cd09872, PIN_Sll0205-like, VapC-like PIN domain of Sll0205 protein and homologs. Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of the Synechocystis sp. (strain PCC 6803) Sll0205 protein and other uncharacterized homologs are included in this subfamily. They are similar to the PIN domains of the Mycobacterium tuberculosis VapC and Neisseria gonorrhoeae FitB toxins of the prokaryotic toxin/antitoxin operons, VapBC and FitAB, respectively, which are believed to be involved in growth inhibition by regulating translation. These toxins are nearly always co-expressed with an antitoxin, a cognate protein inhibitor, forming an inert protein complex. Disassociation of the protein complex activates the ribonuclease activity of the toxin by an, as yet undefined mechanism. The PIN domain belongs to a large nuclease superfamily. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	4.18546e-42
NZ_AP017962.1|WP_096419268.1|53866_56632_+|hypothetical-protein	gnl|CDD|274279	TIGR02746, hypothetical_protein, type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.	0.000121774
NZ_AP017962.1|WP_096419275.1|51843_52137_+|CRISPR-associated-endonuclease-Cas2	gnl|CDD|378256	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages.	4.61588e-18
NZ_AP017962.1|WP_096419257.1|41715_42693_+|WYL-domain-containing-transcriptional-regulator	gnl|CDD|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	1.0788e-42
NZ_AP017962.1|WP_096419265.1|50182_51841_+|type-I-MYXAN-CRISPR-associated-endonuclease-Cas1	gnl|CDD|274899	TIGR03983, hypothetical_protein_LA3181, CRISPR-associated endonuclease Cas1, subtype MYXAN. Members of this protein are the Cas1 endonuclease, or Cas1 domain in Cas4/Cas1 fusion proteins, of the MYXAN subtype of CRISPR/Cas systems. These systems typically feature repeats and spacers each about 36 base pairs in length. Species with this type of CRISPR system include Myxococcus xanthus, Cyanothece sp., Leptospira interrogans, Sorangium cellulosum, Anabaena variabilis ATCC 29413, etc.	0
NZ_AP017962.1|WP_096419263.1|48679_49309_+|CRISPR-associated-protein-Cas5	gnl|CDD|187819	cd09688, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	5.86711e-50
NZ_AP017962.1|WP_096419259.1|45635_47129_+|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1	gnl|CDD|132524	TIGR03485, hypothetical_protein_L8106_30105, CRISPR-associated protein Cas8a1/Csx13, MYXAN subtype. Members of this family are found among cas (CRISPR-Associated) genes close to CRISPR repeats in Leptospira interrogans (a spirochete), Myxococcus xanthus (a delta-proteobacterium), and Lyngbya sp. PCC 8106 (a cyanobacterium). It is found with other cas genes in Anabaena variabilis ATCC 29413. In Lyngbya sp., the protein is split into two tandem genes. This model corresponds to the N-terminal region or upstream gene; the C-terminal region is described by TIGR03486. CRISPR/cas systems are associated with prokaryotic acquired resistance to phage and other exogenous DNA.	1.12644e-39

Protein sequences

>NZ_AP017962.1|WP_096419275.1|51843_52137_+|CRISPR-associated-endonuclease-Cas2
MAELKHWYLVCYDIRSPKRWRKAYKLLEGYGERIQYSIFRCWLTQRSREKLRWQLEEVLTKEDDLLLIRLSQQCVQDLPKYNRPNTWLFDEQTFKVL
>NZ_AP017962.1|WP_096419265.1|50182_51841_+|type-I-MYXAN-CRISPR-associated-endonuclease-Cas1
MFTSTIPETQPTIKVSGLHAIAYCPRLFYLEEVEGLYTQDAAVFAGRRLHVDLEQEEEGEWEDLYLESEDLGIRGRVDALRTRNGATFPYEHKRGKANRDAQKQPQPWESDRLQILAYCYLLEVSLDVEITEGRIRYHADNVLIHVPFNKTAKAEVREAIANARKLLDADFRPPVTENERLCARCSLAPICLPEEARLAHNKEWQPIRLFPKDDDRQILHILEPGTRVGRTGEQIKITHRDNTIEKFSVQQVSQVVLHSFSQISTQALHFLASHNVGIHWVSGGDRYVGSFDNRQGSIQRRIQQYRALSQSDFCVNLAKKLVGCRGQGQRKFLMRGQRGIKIASPQLAANIQQMKRVLKQVENANNLATLLGLEGNLASLYFGALPYLLTEMVADEMRFSGRNRRPPKDRFNALLSFGYSLLLKDVMNSIIAVGLEPALGFYHQPRTQASPLALDLMEIFRVPLVDMVVVASINRSQWNITEDFSIRGQQVWLSDSGRKKFIECYERRKAEAWKHPILGYSLSYARLIELEVRLLEKEWSGEAGLFGQLVVR
>NZ_AP017962.1|WP_096419264.1|49327_49588_+|hypothetical-protein
MSIAELIQKLSQYDPNLPIVIKGYEGGYNDVSIIEEVNLQLNANTENWYGAHEKIRDSETSDKPLCKAIRLAGLNPNCEDPQYSLH
>NZ_AP017962.1|WP_096419263.1|48679_49309_+|CRISPR-associated-protein-Cas5
MMETFYLECPYTSFPRSFARDYKETYLYPPPSTIYGFLLSLVGEEDLTTHLGVKVAIGLIGETPKISRIVRKQRHHKFSKTHAGTYPSSQFSKPNHQELLTDLNVAIQLDSSEEKATVTLTERVKIALSTPEKITRFSGLSLGESWAMVNGIRVYRPEDGEIRWLVTDNRGLIGLPVWIDRKTTQGTFRRFTLENNNFREEAWITIQNY
>NZ_AP017962.1|WP_096419262.1|48276_48663_+|type-II-toxin-antitoxin-system-VapC-family-toxin
MIILDTHAWIWWMTESPNLSPKAVEAIAQYSVIGIPSICCWEIAMLVAKSRLTLSLDVQDWLKLSLAHPKIRLLPLSPEIAVLSTRLPANFHSDPADRLIVATCLTYQVPLLSKDSLIQKWGHLEIIW
>NZ_AP017962.1|WP_096419261.1|48049_48280_+|hypothetical-protein
MLIQKIIDELHEIPEDKLNQVYELIHYFQLGLKQEQTNIPKNGMTQTWSQGNPLKDSVIFEDDILSPIDVIWDVQT
>NZ_AP017962.1|WP_096419260.1|47173_48034_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MAQHLFATIVTPTAVAANNRGEGDGSTLSTLQKITRGHDQYTTVSAEAIRWAYREYFQQHHSKETNRSFNPDKDLYAFQTEKFNAENFIDDDFFGYMDAKKGKDNENATTKRRGALEVSRAISLDPYWGDVAFGSKGGEKNKTSIHQTEVHCTAYQYTLAVTPAHLKKIERVNYLLDAMPAIRHVGGNHSRFLFEFRPESIILRVTEDPSPWIMGCFERVGESIGCPKLVRLVEVNDIPAKELIVAGEIADTPYGKRLEALGVNICRGVKEAIALTKQSLETKLEA
>NZ_AP017962.1|WP_096419259.1|45635_47129_+|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1
MTKMILSLFNPNSLLPHRSGVAGLALALSAMDPTDAPLQWEVTEDEVKLFWDCPDKEAIQWLLSETYQIKDGYLNVKALRLDDQSRYVFTEGVTTTFLQHSKQRTLDKQTITKNFQVDEGQPEIQINYRQLLSCYYTGDFKEAFTSKGQFKKLIPLKGHHVPGLVEDFANGAYQESPENYLALLFLPIACHYYRLPNFLSGLVIPSVNNLQAWVQRRKVYTAKTVTKLKPYGEFRANGAGESALRFLLQEKLIDDTRDFKVNYCEVYRLGKQPWDGNQSYLKQGVYRVHATDEMLQIYQDAWGLFPSVVRKNDKGETWLAQSKILPWIADNLINGDRWHQGFFEFRKSNDIYERTGLVNMTKIENALTPQEQTFFDAIQGGFSTFLRGQIEQATKQGRQLDYSQVTKKVIYRFQRPSTQQEFASAVVDFLSQFRSKAARGSGSDIYLWLHRDRQWKKARDLALLAIATYEGKNKQGETEVPEEILDQASDEPFEDTL
>NZ_AP017962.1|WP_096419258.1|43344_45639_+|CRISPR-associated-helicase/endonuclease-Cas3
MQPKLKPNCLLAKSYEPGHWKGSYSLVGHTVDVVNAVTTLVDNLGNRLITQFDLTCSFEYLRNTARLTAYLHDWGKANDHFQGMVRASIPDTSPRRNREQHQMIRHEIASVLLAWEFKEWLEQAEDDFYTALVAAGGHHLKLGGKEGRATDDLGEIRQSGDRQLYLYALQKKEGKIAYHPQFKGLLKYGVKVLGLPKNIKLSKAPSFAWTRQDIEKKQREIRDYLTLDWEGDPTFIAVVKALLVAGDCAGSALAKEDVSLQQWIQEELKTTLDENKLDRVIQSRLGNHKLRPFQQRLGEVKSRVAIARAGCGTGKTLGAYNWAKTHALGRKLFFCYPTTGTSTEGFIDYVHGKVEAELFHSRYQVDLEMMKTGEEDQLEDNNASEAAIKLESFRAWGAESIVCTVDTVLGLFQCNRRPLYCFPAIANGAFVFDEVHCYDAKLFGTLLRFLQVVKAPVLLMSASVLPWQKAAIEAAAGEPVEIIEGAKDLEALPRYRFHVLNQPDWERVEQELQTGGKVLWVCNQVNTAIEIYEEAKQRGLDALLYHSRYRYGDRVNHHRAVVDAFKPEQKKPIIAICTQVAEMSLDLSATLLVSHITDPAGLIQRLGRLNRRYCGHVLDALFYPDEKAGFPYKQEQLTNGLTMVQSFTGDVSQAELAQWLEKFTPEPNQKDEEQGSVWLDGQWKTYPASLREGGHNVTVLLAEDLPSIKKLPAKEIPRYTVPIPNRGWKSQEKYKFYPIAPSDIWGYSEEKGAFDLRKQGGGAA
>NZ_AP017962.1|WP_096419257.1|41715_42693_+|WYL-domain-containing-transcriptional-regulator
MSRQLERLLEIDRLLRSPERQTQGSMAQALEISERTIRNDIAFLKDRFHAPLEFNKTHGWHYTDLTWRLPSIPMTQGELFALTLGARMLQSYSGSVYQSLLQSAIARLVERLPEKVTFDLQQLANERIHFRVGGEIQLDPEIWRQLMEASERSQSVSMRYYSPKSQQESERVFDPYELDIYRASNPYVWGYCHLRQEVRQFRIDRIRELKKLEQTFERRPFNLQEKLGTSFQYEVGGKTYDVAIAFDKQTAPYITERLWHKTQTIETHADGSITLQFTASGLNDMKRWILGYGRGAIAKSPPELVRMLQRETEQMARQNETGEFE
>NZ_AP017962.1|WP_096419266.1|52998_53520_+|hypothetical-protein
MSHSIYLKPTRLAETLTIPLSLLLLRLEQPLWAMVPLCIYAILFIPKGLRAFQRLKSRTKFLAALSALAMLSLCISPPVMAIEYSFLLQATQTAMETCIFSQIAGLSVLSGLIFTAIRGGVVLGLAFVAFEAWQEKRKQQDSSEQIKTIVYAIVSIVVVGAIEPLIMGSGCGS
>NZ_AP017962.1|WP_096419267.1|53525_53867_+|hypothetical-protein
MSVKNTKVNKSFRRRANFFVFSPEHIIPFGLSLFFGFIVVGVWFQAGFIWVMVYTCAPFITWLIVAGQSPARTAAKYQHPPRWRRGRGRHSVWLKRKPTPAISQQILRQEKLR
>NZ_AP017962.1|WP_096419268.1|53866_56632_+|hypothetical-protein
MGLATAIQALRGDIPTDYLPAIENFLDLAKVVCLRKGGHDIWAIANTQGDLTQFSFSASYQCIHTNEAHEPSMAGLLSVLKGLAEQEKLTFSTQVNSHFEASPADHLPNPAAQLLWLNKDSTRRNLAHSKQRKQITYRIDSTFTVDGAAVDSENGVEKFFSKVIRRWEALFTDAEYEREYDTLLTLFQSAYRAGIEFEKTLYATLKLDQAQLYDGDRLWHLLNQAIGGNSALPYYLFVDLDDPHPEILEFNRAGEKLMGQPLALLSQLFTDENFPRAHQEHLWLPARQQYCAILGFEDLPDEFTSPEHKYRWLWDCLISLDLSDYDLITQYSYASVDGVRKSLQNYTKQQLRTSNKNGQADQTAVVTSEEAMEAQRLIQQGDYPVYVGVAILVYAPDLDILRDKLTLIRKGFNRPTRLFQERDYVWRIWLQTLPIKLELLWRCTGFVTGDYRLSINASAALGLVNLTGIVNQAETGTEFISIQGGVPFRASLEDEFGSPRHGVVYGRTASGKSVLVGDMLVEAAFTGAQITSMDLVVPSETETAEETQKTSSTYSALIKFLGGTEFDPSREASNILELPDLSHFSIQIQQERRDAFGESIEAMMQALVLDGVTDSGLATQVEFILTTAIARFYRDPDILERIETAQKQGINSAGWLAYPTLQDFYERVNYSLVQNDDEGQRQAVNFIRSALMSWIEGAMGKQIAQPSSVDFFHTPYLQFSCLKPSSEKKARILGLMICNIAQRRALQCSRSIFYIDEASIWLEYAGLAKYVGVQMATARKSGLTVILTTQDPVIIETNAASAKIRTNLSLRITGRINGDDIDHYQRIHRTPEAIISENVASTFKADRRRGTSQWLVDGDRRYTHGRYFASPILVGLLANNKEQVIARDRFFEQYPNPLEAAARWGAHFQTCMQQGKPLEDF
>NZ_AP017962.1|WP_096419269.1|56634_57345_+|hypothetical-protein
MKTKKILLILPLATGIILISSAKSEASVLDILKNTWNQTTQIISSTFETYVGSHFENFLQVYVPQGIQAITGALGLPDPSGIFADIRDDAALNQTDINDIAEGILRQSEVAAGTSSTLGEIIFSAEGQQNTEQLAETATQISSSSGELAEQCQSLNITQEVMKCMTLQMANETQLSRIQIEQNQQILQQLAANNIAQANVVKTLTRDERTKQAAQDQAANQILREVQFNNALVDDL
>NZ_AP017962.1|WP_024546922.1|57461_57776_-|HigA-family-addiction-module-antidote-protein
MTEEKLLPIHPGEILLEEFLKPMNLSQNKLALAIRVPARRINEIVQGKRRITADTALRLALYFNMSSRFWLGLQMDYDLDITEDKIGEQLHKEVVALNLENIAV
>NZ_AP017962.1|WP_030008038.1|57784_58066_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MIRNFKDKEAQKIFERQRSRKLPSDIQQVALRKLRMLNRAETLQDLKVPPANRLEALKGDRQGQYSIRINNQWRICFSWEEGEVIDVEIVDYH
>NZ_AP017962.1|WP_096419270.1|58258_58573_-|hypothetical-protein
MNDQQKTVHELNQAVLATALSKLVSNLQSCQSRLDYAYARAARSQNAHIQGKLSAASLKLSEMVEILDDEAIQSLVNVHPERDLLRELMTGTTVQPLAHEEINF
>NZ_AP017962.1|WP_096419276.1|58578_64386_-|DEAD/DEAH-box-helicase-family-protein
MLGATPENCTVNELNPDRAAQLRIQGFTVTEHDATKYLPAGLHDVVVMNPPFGRVKGKRFRLAGDVGTTSQIDQAIALQSLQAMRDDGRAVLILGGKPETTPSERAEAYNSLETRRFFYVLQQHYNVTDHFTISGDLYRKQGAGWAIDIIQIARRGKSERPLPAVEPPRIYTSFNQLRGFLHDYLQHHPIAELQRVSDRRASMDSSDRRGSSVIYGANSAGVNESGFSDVPRTDEGAGGMDVPRVDQKLQIRSLTSRIGRNFATTQSDSDGSFALSGRGDRTDLDLGKRLGRKSGGIRPDMAELVAGDQLGNRVSRFINGATTESQSHGTARRSDNFAISVGTQNTFLINEGKIMSEEFNIPYQPRSQGRSPQTLIPTNMAMAAQKALDNFEAAHGNIDDFVCQRLGYPSKSAMFEVLYAEQIDSLALAFVQKDQGKIFLNGDQTGNGKGRFGAANIIDAKRQGYIPVFVTQKPNLYAAMLEDLADIGQDGLTPFMTNNNEKLILKNGAVLTTGDKASQEAEMFQLAQGNGLGKYDAIFTTYNQLQTVNNKEPYRREFLRAIAHRAVFIFDEAHEAGGGQSETWRSGQAPNRAEFVRELVDLSAGAVFMSATATKNPAVMDLYARGTDAIHAVESMYRLENTLKAGGIPLQQMMATQFVSAGNMLRRERSFDNISFDAKIVPVDQEIADNISAVMRAIDRFDAAKSEAMKDLRKEVKAEAKSLSEDNSIGQAGVKSVNFTSLMHNVIDQGLLAQKAEATVQEAIAALERGEKPLIALSNTMDSFIREYTEDQGIEAGEAIQVTFGDVLNRYLERSRDVVITDYLGKRTRVPMAAEQLGEEAIAAFEEAKEILANADFSKIPLSSIDYMKYRLAQEGYRVDEITGRSSILQYNDEGMTYALRSAKDTSPQAKIDIVNRFNSGQLDVVILNRSGATGISLHASEKFSDQRPRHMIVAQAERDINQMMQMLGRANRFGQVIEPKFTLVMADVPAEKRLGAILAKKMASLNANTTAGRDSALSVGNVIDFMNTAGEEVITELLEENPELDAMLSYPTRGSLDGNTALIERVTGRIPLLPLADQEELYGIIEAETEALIKQKEAMGENILAADKLDLDARTVAMMEVVPADSQRVSEFTGAVMLEVVDAKVINKPPSQLQVMNLVRESLGQAKVKAIEEHDLGRMQAIAQQQGSEKLQALQAAMTAYRERVFAQLKSAETLGKTEEKLNQQLDAVQKLIEQFPVGEPVQFFSLGLEDVKVSSGVVVDIAQKSRAIGSPSAPTNWTMQIISLEGKLLSLPFSKINTGRASSITLNSVDPDRNIYGEFDRLQQAQRTEMQVFTGNLLKAYEKFPKGKFVNFTDSQGQTRQGLLMHQDFDIVKQLQQQPVSFENPEQVRLFLTEWSHYRGVVESAEQDLTIKANGNARLNGKPPEYYVVQVPEATSRGGKYFLNEALLQAAQEEFYSVGGRMEMRVQPKDLEAVVKVLMAELQIKLVVHDPSYKELLRNHIGHSLPTLQQITPSVGQQEVTEQLQIFSTMPPEKVSPPVVELPDFVQVIPVSENPAPVQTSTIQGQGILSSEKQGSQAAKYVAQLLHEGGFAEIVLQSDNFHQRFEQRSYLPFVIERHGEQLYLSHYAELNGDHYIDAEMVFQIGQRGNLSLLETASYNPVTGGELRNKDYSFAELFSGNLLAQGWAEVMLASRQSFAPEPEIPEPMETVVASQELTVATSEQVVEETAQSSSKDLVVSPENWLTVAQAIAKPPAYLQRIQEVITKPLQEKAVTAMEKDFAAFQQSMTALRQWYHCARCIDKTVTYLQGIQAIAEQFKAGQPLSEAVHRVMWEDRRVATFEQLAMGLDRQHPETFLQNVAQRGLQKGLQPQELAATLLQGDPALRDIYKIQPQSTQTYLQKILTTAEQLFTREQPQPISIKASSEKRNHHPKL

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_AP017962_1	1.1|52429|33|NZ_AP017962|CRISPRCasFinder	52429-52461	33	NZ_AP017962	Synechococcus sp. NIES-970 plasmid plasmid3 DNA, complete sequence	52429-52461	0	1.0
NZ_AP017962_1	1.2|52499|35|NZ_AP017962|CRISPRCasFinder	52499-52533	35	NZ_AP017962	Synechococcus sp. NIES-970 plasmid plasmid3 DNA, complete sequence	52499-52533	0	1.0
NZ_AP017962_1	1.3|52571|35|NZ_AP017962|CRISPRCasFinder	52571-52605	35	NZ_AP017962	Synechococcus sp. NIES-970 plasmid plasmid3 DNA, complete sequence	52571-52605	0	1.0
NZ_AP017962_1	1.4|52643|36|NZ_AP017962|CRISPRCasFinder	52643-52678	36	NZ_AP017962	Synechococcus sp. NIES-970 plasmid plasmid3 DNA, complete sequence	52643-52678	0	1.0
NZ_AP017962_1	1.5|52716|38|NZ_AP017962|CRISPRCasFinder	52716-52753	38	NZ_AP017962	Synechococcus sp. NIES-970 plasmid plasmid3 DNA, complete sequence	52716-52753	0	1.0
NZ_AP017962_1	1.6|52791|36|NZ_AP017962|CRISPRCasFinder	52791-52826	36	NZ_AP017962	Synechococcus sp. NIES-970 plasmid plasmid3 DNA, complete sequence	52791-52826	0	1.0
NZ_AP017962_1	1.7|52429|34|NZ_AP017962|PILER-CR,CRT	52429-52462	34	NZ_AP017962	Synechococcus sp. NIES-970 plasmid plasmid3 DNA, complete sequence	52429-52462	0	1.0
NZ_AP017962_1	1.8|52499|36|NZ_AP017962|PILER-CR,CRT	52499-52534	36	NZ_AP017962	Synechococcus sp. NIES-970 plasmid plasmid3 DNA, complete sequence	52499-52534	0	1.0
NZ_AP017962_1	1.9|52571|36|NZ_AP017962|PILER-CR,CRT	52571-52606	36	NZ_AP017962	Synechococcus sp. NIES-970 plasmid plasmid3 DNA, complete sequence	52571-52606	0	1.0
NZ_AP017962_1	1.10|52643|37|NZ_AP017962|PILER-CR,CRT	52643-52679	37	NZ_AP017962	Synechococcus sp. NIES-970 plasmid plasmid3 DNA, complete sequence	52643-52679	0	1.0
NZ_AP017962_1	1.11|52716|39|NZ_AP017962|PILER-CR,CRT	52716-52754	39	NZ_AP017962	Synechococcus sp. NIES-970 plasmid plasmid3 DNA, complete sequence	52716-52754	0	1.0
NZ_AP017962_1	1.12|52791|37|NZ_AP017962|PILER-CR,CRT	52791-52827	37	NZ_AP017962	Synechococcus sp. NIES-970 plasmid plasmid3 DNA, complete sequence	52791-52827	0	1.0

1. spacer 1.1|52429|33|NZ_AP017962|CRISPRCasFinder matches to NZ_AP017962 (Synechococcus sp. NIES-970 plasmid plasmid3 DNA, complete sequence) position: , mismatch: 0, identity: 1.0

caccttccacggcacgaaacaaggctatgaagt	CRISPR spacer
caccttccacggcacgaaacaaggctatgaagt	Protospacer
*********************************

2. spacer 1.2|52499|35|NZ_AP017962|CRISPRCasFinder matches to NZ_AP017962 (Synechococcus sp. NIES-970 plasmid plasmid3 DNA, complete sequence) position: , mismatch: 0, identity: 1.0

caagggcaattaaaccttgaggaggacgaggggaa	CRISPR spacer
caagggcaattaaaccttgaggaggacgaggggaa	Protospacer
***********************************

3. spacer 1.3|52571|35|NZ_AP017962|CRISPRCasFinder matches to NZ_AP017962 (Synechococcus sp. NIES-970 plasmid plasmid3 DNA, complete sequence) position: , mismatch: 0, identity: 1.0

ttggcgaggaagttttttcgccgtgccgataaatg	CRISPR spacer
ttggcgaggaagttttttcgccgtgccgataaatg	Protospacer
***********************************

4. spacer 1.4|52643|36|NZ_AP017962|CRISPRCasFinder matches to NZ_AP017962 (Synechococcus sp. NIES-970 plasmid plasmid3 DNA, complete sequence) position: , mismatch: 0, identity: 1.0

atcgctacgtttatattcaggcccaagggcgaccgg	CRISPR spacer
atcgctacgtttatattcaggcccaagggcgaccgg	Protospacer
************************************

5. spacer 1.5|52716|38|NZ_AP017962|CRISPRCasFinder matches to NZ_AP017962 (Synechococcus sp. NIES-970 plasmid plasmid3 DNA, complete sequence) position: , mismatch: 0, identity: 1.0

tgcatcacaacatcatatttagccggagccttgggaaa	CRISPR spacer
tgcatcacaacatcatatttagccggagccttgggaaa	Protospacer
**************************************

6. spacer 1.6|52791|36|NZ_AP017962|CRISPRCasFinder matches to NZ_AP017962 (Synechococcus sp. NIES-970 plasmid plasmid3 DNA, complete sequence) position: , mismatch: 0, identity: 1.0

tcaaaaaaagactaacaaaaaccaaggtcatcagaa	CRISPR spacer
tcaaaaaaagactaacaaaaaccaaggtcatcagaa	Protospacer
************************************

7. spacer 1.7|52429|34|NZ_AP017962|PILER-CR,CRT matches to NZ_AP017962 (Synechococcus sp. NIES-970 plasmid plasmid3 DNA, complete sequence) position: , mismatch: 0, identity: 1.0

caccttccacggcacgaaacaaggctatgaagtg	CRISPR spacer
caccttccacggcacgaaacaaggctatgaagtg	Protospacer
**********************************

8. spacer 1.8|52499|36|NZ_AP017962|PILER-CR,CRT matches to NZ_AP017962 (Synechococcus sp. NIES-970 plasmid plasmid3 DNA, complete sequence) position: , mismatch: 0, identity: 1.0

caagggcaattaaaccttgaggaggacgaggggaag	CRISPR spacer
caagggcaattaaaccttgaggaggacgaggggaag	Protospacer
************************************

9. spacer 1.9|52571|36|NZ_AP017962|PILER-CR,CRT matches to NZ_AP017962 (Synechococcus sp. NIES-970 plasmid plasmid3 DNA, complete sequence) position: , mismatch: 0, identity: 1.0

ttggcgaggaagttttttcgccgtgccgataaatgg	CRISPR spacer
ttggcgaggaagttttttcgccgtgccgataaatgg	Protospacer
************************************

10. spacer 1.10|52643|37|NZ_AP017962|PILER-CR,CRT matches to NZ_AP017962 (Synechococcus sp. NIES-970 plasmid plasmid3 DNA, complete sequence) position: , mismatch: 0, identity: 1.0

atcgctacgtttatattcaggcccaagggcgaccgga	CRISPR spacer
atcgctacgtttatattcaggcccaagggcgaccgga	Protospacer
*************************************

11. spacer 1.11|52716|39|NZ_AP017962|PILER-CR,CRT matches to NZ_AP017962 (Synechococcus sp. NIES-970 plasmid plasmid3 DNA, complete sequence) position: , mismatch: 0, identity: 1.0

tgcatcacaacatcatatttagccggagccttgggaaac	CRISPR spacer
tgcatcacaacatcatatttagccggagccttgggaaac	Protospacer
***************************************

12. spacer 1.12|52791|37|NZ_AP017962|PILER-CR,CRT matches to NZ_AP017962 (Synechococcus sp. NIES-970 plasmid plasmid3 DNA, complete sequence) position: , mismatch: 0, identity: 1.0

tcaaaaaaagactaacaaaaaccaaggtcatcagaaa	CRISPR spacer
tcaaaaaaagactaacaaaaaccaaggtcatcagaaa	Protospacer
*************************************