CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP023455	Rhodobacteraceae bacterium QY30 plasmid unnamed, complete sequence	0 crisprs	NA	0	0	1	0
NZ_CP023454	Rhodobacteraceae bacterium QY30 chromosome, complete genome	1 crisprs	csa3,cas3,WYL	0	1	2	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

26307 : 36236

Staphylococcus_phage(28.57%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096520502.1\|26307_27090_+	ABC transporter ATP-binding protein	W5SAS9	Pithovirus	4.7e-11	25.7
WP_096520589.1\|27076_27811_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	8.8e-12	28.1
WP_096520503.1\|27916_28705_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_096520504.1\|28714_29767_+	phosphotransferase family protein	NA	NA	NA	NA
WP_096520505.1\|29786_30656_+	SDR family oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	5.0e-14	26.1
WP_096520506.1\|30662_32303_+	AMP-binding protein	A0A2H4PQM9	Staphylococcus_phage	1.3e-34	26.2
WP_096520507.1\|32308_33085_+	3-ketoacyl-ACP reductase	Q06VL0	Trichoplusia_ni_ascovirus	1.4e-12	28.8
WP_096520508.1\|33121_34786_-	AMP-binding protein	A0A2H4PQM9	Staphylococcus_phage	3.9e-39	27.2
WP_096520509.1\|34939_35155_-	hypothetical protein	NA	NA	NA	NA
WP_096520510.1\|35303_36236_-	3-keto-5-aminohexanoate cleavage protein	A0A1V0SL81	Klosneuvirus	3.4e-16	23.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP023454

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP023454_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023454_1

1242815-1242920

Orphan

Consensus_repeat	Method
AGTGTCCGAAATCCGGACACGGC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP023454_1

>merge|NZ_CP023454|1|1242815-1242920|CRISPRCasFinder
AGTGTCCGAAATCCGGACACGGCTTTCGGCATTTTCCGGACACGGCTCGGCCGGAAAACCGGACACGGCTTCCGCCTCATCCCCGTGTCCGAAATCCGGACACGGC

>NZ_CP023454|1|1|1242815-1242920|CRISPRCasFinder
AGTGTCCGAAATCCGGACACGGC	TTTCGGCATTTTCCGGACACGGC
TCGGCCGGAAAACCGGACACGGC	TTCCGCCTCATCCC
CGTGTCCGAAATCCGGACACGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023454.1\|WP_096518225.1\|1225498_1226059_+\|DUF3489-domain-containing-protein	unknown	unknown	gnl\|CDD\|371839
NZ_CP023454.1\|WP_096518240.1\|1251171_1252833_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|214861
NZ_CP023454.1\|WP_096518238.1\|1247071_1250269_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023454.1\|WP_096518231.1\|1237531_1240525_+\|type-I-restriction-endonuclease-subunit-R	unknown	unknown	gnl\|CDD\|223683
NZ_CP023454.1\|WP_096518241.1\|1252832_1253873_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271175
NZ_CP023454.1\|WP_096518236.1\|1243936_1244194_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NZ_CP023454.1\|WP_096518234.1\|1243305_1243701_-\|VRR-NUC-domain-containing-protein	unknown	unknown	gnl\|CDD\|214959
NZ_CP023454.1\|WP_096518223.1\|1223496_1224725_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP023454.1\|WP_096518232.1\|1241228_1242296_-\|DNA-cytosine-methyltransferase	unknown	unknown	gnl\|CDD\|223348
NZ_CP023454.1\|WP_096518227.1\|1231845_1233867_+\|SAM-dependent-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|223363
NZ_CP023454.1\|WP_096518237.1\|1245411_1246683_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271177
NZ_CP023454.1\|WP_157748765.1\|1234943_1236932_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|341135
NZ_CP023454.1\|WP_096518244.1\|1254916_1255825_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379352
NZ_CP023454.1\|WP_096518228.1\|1234041_1234947_+\|Abi-family-protein	unknown	unknown	gnl\|CDD\|377910
NZ_CP023454.1\|WP_157748766.1\|1254365_1254581_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023454.1\|WP_157748767.1\|1254538_1254886_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023454.1\|WP_096518239.1\|1250272_1250983_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023454.1\|WP_096518226.1\|1226317_1231426_+\|RecQ-family-ATP-dependent-DNA-helicase	unknown	unknown	gnl\|CDD\|223588
NZ_CP023454.1\|WP_096518230.1\|1236962_1237535_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023454.1\|WP_096518224.1\|1225175_1225403_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP023454.1\|WP_096518240.1\|1251171_1252833_-\|recombinase-family-protein	gnl\|CDD\|214861	smart00857, Resolvase, Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.	1.0805e-34
NZ_CP023454.1\|WP_096518231.1\|1237531_1240525_+\|type-I-restriction-endonuclease-subunit-R	gnl\|CDD\|223683	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].	1.28786e-86
NZ_CP023454.1\|WP_096518241.1\|1252832_1253873_-\|site-specific-integrase	gnl\|CDD\|271175	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine based site-specific recombinases (integrases) that share the same fold in their catalytic domain containing conserved active site residues. The best-studied members of this diverse superfamily include Human topoisomerase I, the bacteriophage lambda integrase, the bacteriophage P1 Cre recombinase, the yeast Flp recombinase, and the bacterial XerD/C recombinases. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. The enzymes differ in that topoisomerases cleave and then rejoin the same 5' and 3' termini, whereas a site-specific recombinase transfers a 5' hydroxyl generated by recombinase cleavage to a new 3' phosphate partner located in a different duplex region. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	0.000890975
NZ_CP023454.1\|WP_096518236.1\|1243936_1244194_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	1.33819e-05
NZ_CP023454.1\|WP_096518234.1\|1243305_1243701_-\|VRR-NUC-domain-containing-protein	gnl\|CDD\|214959	smart00990, VRR_NUC, This model contains proteins with the VRR-NUC domain. It is associated with members of the PD-(D/E)XK nuclease superfamily, which include the type III restriction modification enzymes, for example StyLTI.	1.48895e-06
NZ_CP023454.1\|WP_096518223.1\|1223496_1224725_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	9.49563e-119
NZ_CP023454.1\|WP_096518232.1\|1241228_1242296_-\|DNA-cytosine-methyltransferase	gnl\|CDD\|223348	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair].	2.3044e-41
NZ_CP023454.1\|WP_096518227.1\|1231845_1233867_+\|SAM-dependent-DNA-methyltransferase	gnl\|CDD\|223363	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms].	3.94376e-75
NZ_CP023454.1\|WP_096518237.1\|1245411_1246683_-\|site-specific-integrase	gnl\|CDD\|271177	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain. Rci protein is a tyrosine recombinase specifically involved in Shufflon type of DNA rearrangement in bacteria. The shufflon of plasmid R64 consists of four invertible DNA segments which are separated and flanked by seven 19-bp repeat sequences. RCI recombinase facilitates the site-specific recombination between any inverted repeats results in an inversion of the DNA segment(s) either independently or in groups. HP1 integrase promotes site-specific recombination of the HP1 genome into that of Haemophilus influenza. Bacteriophage Hp1_like integrases are tyrosine based site specific recombinases. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	4.79275e-39
NZ_CP023454.1\|WP_096518228.1\|1234041_1234947_+\|Abi-family-protein	gnl\|CDD\|377910	pfam07751, Abi_2, Abi-like protein. This family, found in various bacterial species, contains sequences that are similar to the Abi group of proteins, which are involved in bacteriophage resistance mediated by abortive infection in Lactococcus species. The proteins are thought to have helix-turn-helix motifs, found in many DNA-binding proteins, allowing them to perform their function.	2.84866e-72
NZ_CP023454.1\|WP_096518244.1\|1254916_1255825_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379352	pfam13730, HTH_36, Helix-turn-helix domain.	2.45092e-13
NZ_CP023454.1\|WP_096518226.1\|1226317_1231426_+\|RecQ-family-ATP-dependent-DNA-helicase	gnl\|CDD\|223588	COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair].	3.81741e-109
NZ_CP023454.1\|WP_157748765.1\|1234943_1236932_+\|hypothetical-protein	gnl\|CDD\|341135	cd17246, RMtype1_S_SonII-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Shewanella oneidensis MR-1 S subunit (S.SonII) TRD2-CR2. This model contains Shewanella oneidensis MR-1 S subunit (S.SonII) TRD2-CR2 and similar TRD-CR's. S.SonII recognizes 5'... GTCANNNNNNRTCA ... 3'. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases. S.SonII TRD1-CR1 does not belong to this subfamily.	1.1088e-21
NZ_CP023454.1\|WP_096518225.1\|1225498_1226059_+\|DUF3489-domain-containing-protein	gnl\|CDD\|371839	pfam11994, DUF3489, Protein of unknown function (DUF3489). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 84 to 211 amino acids in length. This protein has a single completely conserved residue W that may be functionally important.	3.93752e-28

>NZ_CP023454.1|WP_096518232.1|1241228_1242296_-|DNA-cytosine-methyltransferase
MVSRPLHGLSLCAGGGGLDLGVMLAEPGYHTRAFVEWEDWPRAVLIAAQRAGYFAPAPIWTDLRSFDARPFRGAFDAILAGYPCQPFSAAGKRGGADDPRHLWPDVARVIGECRPQWVFLENVAGHVTLGLETVLRELWGLGYTPAAGLFSAAEVGAPHERLRIFILAHTDEPAPRHRPLQPGREQRLYPEGGSAGAGHREGPAEPMADPGRPELEGIQRGQHHPRRRQIPDGPAALPGGAGLHPPGPGDLAGWATVLAARPDLAPALGFDDCLAWARRLAADPEGQVAAAAESALRRMVDGLAHRARALRLLGNGVHPLAAAHAWRTLAAAHGLGPVDLATDRCGPAPGADGFP
>NZ_CP023454.1|WP_096518231.1|1237531_1240525_+|type-I-restriction-endonuclease-subunit-R
MTSPNIRREKLHTEEAVEIHLVDQLVSNQGWRERPYTAFDRANAIDPEMAAEFVRKTQPQAWSRLNDQYPGRAEAELARQIASRLGAVGTLEVLRQGITIVPGIRISLCGFRPASGMNPDLVRSYEGNILTAMRQVRYSRSSENAIDVVLFVNGIPVITLEIKNTLTGSTYQTAETQYRRDRSPNGEPLLTFKRGALVHFALDQDNVSMTTHLENGRTRFLPFNRGRDGGAGNPDVEGEFRIAYLYRDVTGSKAVWSREVLLDIIHKFVLVSEVEEPGGKVKRTTIWPRFHQLDAVRRLCADAKQMGAGRNYLFQHSAGSGKSNTIAWVAHQLATLHDDQDRPIFDSVIIVTDRVVLDRQLQNTVKSFAQTANYVKAIDGTSRQLRAAIEQGAKIIISTIHKFSTDQMSVLKNEAQRRFAILIDEAHSSQSGKHADSMARVLADGGISEEDERDEVEQALLELQRLRGPQANLSYLAFTATPRNVTMERFGISGPDGLPAPFHLYSMRQAIEEGFILDVLQNYQTYQAYFALEKAIDEDPELLERKSRRKVARYVDFHETAMDQKAEVIVEHFRRHALPELAGHAKAMVVTASREHAIRTHQAISRYIVAQGYDDVHSLVAFSGEISVDGQAYSEPGMNGFPETELPRRFDGAEFNVLVVAEKYQTGFDQPKLVAMYIDRKLDGLQAVQTLSRLNRTFPTKTRTFILDFRNAVDEIQEAFRPYFNATGMEDRSDPNQIYNLQARLNAFGILQQDEIDRFVARFLGNRQAADERPVLEGIVRQAVDRFEAQLAEDEQEEFRQLLASFLRFYSFIAQVVSLQDTGLEKLHVYGSWLKRLLPSRAAPEGEDITDDMLQLTAYRLQDQGVADGRLQRDETASLSPIDRFGANAYTEEEQRALSEIIDAFNARHGTNFTEEDYIRFEAVNEAILDDDAWVEILRNNAPEVVKDRFNAEFMRRAIHVFQRDNQMRNAFMQDKEARDMLMGLMFRRVMRAARAA
>NZ_CP023454.1|WP_096518230.1|1236962_1237535_+|hypothetical-protein
MTDGTAHLRFTPLFSDMGDRAARDDEWSYPKGILRDGMVALDENKRGLADQYFDAAEAVVKLVNDNQVADYTVSSPILYLYRHSFELYLKCLIEASGGKPGREHDLAKLLAMAPCLPDWMRNRILELHAVDPRSTHLRYGHESGQFPGPEGWAEMNFLRDAMHALRDHFVDLIERLRLNVPTGSARGRNS
>NZ_CP023454.1|WP_157748765.1|1234943_1236932_+|hypothetical-protein
MKTLQERVHSAPKPDSWKLDKLHRVLRVRQGFKNVGMVEDNLLSLSYGRIKRKDIDGAGGLLPESFETYQIVESGNIVLRLTDLQNDKRSIRQGLVTERGIITSAYDALEATRGNEARFWAYALLALDLAKYYYSLGGGVRQSIKFSDFPNDWVYLPDLAIQKQIADFLDAEIARIDALIDKKQRFSDILMSNRTDAVLQVFERFNAPVMQITPETYATDIRTDGWSVRRVKHVISFMTSGSRGWSDLISDEGELFLQSGNIGRSMEVVLDTAQRIQPQSGAEAKRTRLQAKDVLVCITGGRTGAVGYLEQITEPAYINQHVCLLRARPALMEPKLLAHILYSRIGQKQLDFFQYGLKQGLGFSQVGEVRVPVPPRNLQNEILREIDQALMKIDRLLDRQSASIIKLREYRAALITAAVTGQIDVAAHARPMETVPRRAVAEVVQLHPSLQPTSLPDRRTIRVLVAADVVHRLGADPYLGRTKLQKLMFLAEAHANINDIAGRYQRYRYGPYDDAMVQEIELGLRQDGYYDTREGTGVDREKVAFQQMSRAGGHRDALAAALGGKTDTLRQLVDLFKGKDTEATEAVATLYAVWNDALIDGKQPDDAAIIRGFLQDWHPEKGKFKQADLQTWLGWMRRHGLVPKGTGPRTVSTNTPSLFERE
>NZ_CP023454.1|WP_096518228.1|1234041_1234947_+|Abi-family-protein
MKFTKPATSITDQLALLRRRGMVIDDEPAARHYLQHISYYRLRAYWLTYEAPAAVGDHAFRPGTRFEDVLALYVFDRQLRLLVMDAIERVEVALRAGWAHHMAMTYGSHGYLDPAHHDSVANHANGLDDLAKEIRRSNDTFVHHYRRKYTDPDLPPVWMAAEIISFGQLSMWIGNLKLRADRQAISKPFGLDEKALVSFAHHMSYVRNICAHHGRLWNKRFTVTMAVPKFPAKLPIAMRGAHDRMLHNTLVMLDHLLGVVAPDSGWRGRLVALIDGCPQADPAAMGFPADWRARAAWRVAT
>NZ_CP023454.1|WP_096518227.1|1231845_1233867_+|SAM-dependent-DNA-methyltransferase
MSQEAIKTNAAYIWSIAEILRGDFKQSEYGKIVLPFTVLRRLDCLLEPTKLAVLETASTLPEETDDEARAMILTAIASPGGQIYNESQFTFASLRGQDPRQLRANLIDYIAKFSPNVRDIFIEKFEFTEALKKLDNAGILWAVFDRVSQIDLHPEAVSNLEMGYLFEELIRRFSEMSNETAGEHFTPREVVRLMVDLLIANDQGALSGRHIVRRIYDPACGTGGMLSIAEERMVEMNPTLHVDLFGQELNAESFAICKSDMLVKGHDASRIAFGNTLIQDAHKGQTFHYMLSNPPYGVDWKKYADPIKEEAADRGMKGRFGAGLPRISDGQLLFLQHMIAKMRDDENGSRIGIVMNGSPLFTGGAASGESEIRRWMLENDWVEAIIALPTDIFYNTGIQTYVWILTNRKPVDRRGRVQLIDASGERFWRSMRKSLGSKRREITDEARAEIVRIYGEYLNGHAGYGDVSKIFPTTDFGYREIRVERPLRLRFDVTDEALIALAQDRAMEKLTAPERQDLLVALKADLGGEVFMDRGDFDKALTRMLREAKLKIGAPVRKAILAQFGTPDEEAAICRDKDGNPEPDTSLRDHELVPLLEDWQAYFDREVRPFVPDAWVDTAYTDDRDGQVGRVGYEINFNRYFYRYVPPRPLAEIDAELKSLESEIATLLSEVTV
>NZ_CP023454.1|WP_096518226.1|1226317_1231426_+|RecQ-family-ATP-dependent-DNA-helicase
MTLDPAPFLSCCVSVDLEVDPKSARLFAFAAVRGERAVVHKGAALDPALDRLEALCEGAAHLVGHNILRHDLPYLVANRARLAGLGAAPIDTLWLNPLAFPRNPYHHLVKHYQDGRLQVGHVNDPEQDARLALQVLADQIASFTRLAQEAPDAVLAYHNLTTRGEASAGFDALFQFLRGPAPGEAAAHAAIRRLLDGRACNHRLEQTLGRLSDPRNGWPMAYALSWISVAGGDSVMPPWVRMQFPQAGRIVRHLRDTNCEDPACAWCVEKNNPNAALERWFGFPSFRPQPVDDMGRPLQERIVAEAMAGKSVLGILPTGTGKSVCYQIPALSRFDKTGALTVVISPLVALMADQVQGLARAGISSAVTVNGMLSLPERHDALEKVRMGDAAMLLISPEQLRSPSIRTVLQQREVGLWVLDEAHCISKWGHDFRPDYRYVSRFIKEFSGDSPAPVLCLTATAKPEVVRDIRDHFQTRLAVDLMLLDGGAVRTNLSFAVLPTQKATKLTDILSAIEANLPPEGASGAVVYCATRGATEKVAEFLKGQGLAADYFHAGLPPDRKRDVQEAFRTGQLRVIAATNAFGMGIDKPDIRLVVHGDIPGSLENYLQEAGRAGRDRGPANCVLLFSPEDVERQFSLSARSRLARHEIGAILKALRRMEKHKSGEVVATPGEIVREEKDQEFERDKTTDDTRVKTAVAWLEEATLLSREENRVQVFPSSLRIRSVDEAAAILERAQITGVRRTQLMDLVRHVMNAPVDAGVSTDDLTGACGLSGRELHKAFADLEVLGIASNDTGITVYVHLGVEDASARRLDHAGRMEADLIALMQESVPDAEGSEAQPLNLTETCQFLRDKGHAQVRPDLVETILRGIAQDGRDQDGGRGNLTLRKVSRNTIFVRLERSWLVVARTAELRRQGAHALLAHLTGKVSKGTRGKDIQVETTLGAMLDALNGDALLRSEVKDMTRLMDRALLWLHEQQVATLGRGLTVFRPAITVHLNPKGGPFTVQHFAPLEEHYSETTIQTHVMAAYAEKGLEAMDQAQRLSEDYFVLDRDAFLRRWLPGRGTEIRRQTTGTSWKTIVDALDNPVQAEIVRDEREQTNVLVLAGPGSGKTRVLVHRIAYLIRVKREDPRGILVLTYNRHAAAEIRERLRRLIGEDAAGVTVSTCHALAMRLMGASFAGDHEGLRDFDGIVMQAVALLRGDGLTKVEAEALRETLIQGYRWLLVDEYQDIGPEEYALIGAVAGRSLEDDLRISLFAVGDDDQNIYAFAGASIDFIRRFEADYAAKPVWLTENYRSTAHITAAANAVIGPAAQRMKAGHDITVNRARAKAMPGGDWAALDPVAQGRVTLLDAGGDTAQAVAALDELQRLSRLAPDWSWRRCAVIARDWRRLEPVRAYAEALGIPIDMANEKPLTLWRMREMQGFVRALLADRTRLLTISDLVAILNAQPQSRWTDLIGEGIGTLARELVEKAAPVPDIVQWFGEWARDVRGEQRGLLLMTAHRAKGLEFDHVAILNGGWDRPSRGEDSDAPRRLFYVAMTRARATLTVLTDGPHAFVRPGDAVLARRVTPETAALPRTRLRYVPPDPKLVDLSFAGRLRPGDPSLAAIAAARPGDPVHLVRDGERWRIDDARGQTLARLSRAFAPPDGSIFVRGEVSAILNWRREDGDEEYNHLLRRDEWEVVLPELVFEAGAQAVILDQNGS
>NZ_CP023454.1|WP_096518225.1|1225498_1226059_+|DUF3489-domain-containing-protein
MTTPSDTQSLILSRAASRPGNLALPLPEGLVGAAAKMVVGKMIARGWLEEVEANLRRREPMWRETGDGHGTTLVATEAGLEAIGIEPVVASAVARALKANLEPAQTPDDAGAAKPVAIRAGTKQAQIIGMLQRPEGATVAEMVAATGWLDHTVRGSISGTLKKKLGLPISAEKAEGRGTVYRLDTL
>NZ_CP023454.1|WP_096518224.1|1225175_1225403_+|hypothetical-protein
MTTRRSTDNTKALDAFMAAKAEIDLMLDRLQDLSDDHFATHPDEIHWGHVGTLEHYAGLLRQITDSAFKEGEHAA
>NZ_CP023454.1|WP_096518223.1|1223496_1224725_-|IS3-family-transposase
MSKTTNKFSPEVRERAVRLVFDNEGQHGSRWQAVVSIAAKIGCSAHTLNEWVKKAEVDSGKRAGIPTEMAEKMKALERENRELRQANDILRKASAYFCDGGARPPVEVMVGFIDAHRDAHGVEPICSVLPIAPSTYYDHLAKRADRSRLSDRARRDEALRPEILRVFEENWRVYGVRKIWRQLGREGFDVARCTVARLMKSMGIQGVIRGKPHRTTLPDKRAPCPLDRVNRQFRVPAPNMLWVSDFTYVATWKGFVYVAFVIDAYARRIVGWRVSTSAHAGFVLDALEQAVHDRRPGKGMGLVHHSDRGSQYLSIKYTERLAEAGIEPSVGSVGDSYDNALAETINGLFKAEVIHRRGPWRSFEAVEYATLEWVDWFNNRRLLEPIGNIPPTEAEANFYAALETEPMAA
>NZ_CP023454.1|WP_096518234.1|1243305_1243701_-|VRR-NUC-domain-containing-protein
MMRRGTPEADLQRAVVQALRIALPSSAIIHHCANEITEAGPRGAKRQAILVGMGVHAGFADLMVICDGRVLFLELKAPKGRLRPEQEAFRDAVLAQGFGWAFVRSLDDALGALADHGFTTRIAAPPRRPAP
>NZ_CP023454.1|WP_096518236.1|1243936_1244194_-|helix-turn-helix-domain-containing-protein
MEQPMKDIQTDPDEDIPDLLADWISREQLARALGLTPDTLSRWEARRQGPPCTRIGRKTFYRRAAIQEWIRAQEQAHPLRKTRGR
>NZ_CP023454.1|WP_096518237.1|1245411_1246683_-|site-specific-integrase
MVKRLKLNEKTLREAEPKPGVSYQIFDTEVIGFAARVQASGARTFTIDYRHAGRQRRMTIGRWPEWSVTAARERAKELRRAIDEGQDPLAARDEWRGAPRVTDMIDRYIAEHLPKLAKTNAGDQVSMLKKMVEPAWGNRLVTEITKSDVARFLDFVAEGRPRPCKAKPNNRARKLQGHKPTPIRANRMGEVLRKMFTLAMEWDWRTDNPAQGFHRRIEHARERFLSPEELTRLAAVLDAAEDQRAAAIIRICMLTGARVGEVRTARFEQFNLDYAIWSKPASTTKQRKIHRVPISQDVAAIVRLRQQAVPSGNPWLFPGDTVGQPVREIRRFWAKVQKDAGLADVRIHDLRHTFASLLVSGGASLEMIGKLLGHSQMQTTQRYAHLMDSPLRAGVDTVANLLRPRPRLVHDAAQDGADLPKSA
>NZ_CP023454.1|WP_096518238.1|1247071_1250269_+|hypothetical-protein
MSSITEGLQVLAPEALPILAELDSRDASLWLLNSFADTAGPEATARLLSLPWECVLSETASAELLKSIDALDSAIENPLVRRRGLVHVLDVPPSQVVLPPRCLPIFLLNGRTEAEKAGFAARARRMEMIMELQQRGVRNLVVLGGPDLTLPIELGQLWLDGFQCGLIIVSDDPEAQQKISVWQASAGARRVILLPTPAAHFAEVLHERYTGRADNRLIIRIRDVQGTRHRVDLSGRDDPEYPLLSNYELLSEAHLEYVTPEGLSAEEINGFFRDPSASWRPYAAQMPWSRDERARNTLTKALRDLDRNGPEASRIFYIRAESGAGATTFIRDLAFGAAMDGYPTLIATQAAFSPNGRSVVNFINSCLNGIAAADLGKGLRQYEVPWLIVFDRSQWEGREADIASFSHQITQAGRRICVVFVTDALLPIAIYAEKRLENLCDLSHEISQDAAMALGRHLNRYLLPLGTARDAREWQAFVNHSLVGPASGRSVFWIALAFWLQRQIDLTETLQGWLYDQFRQKVTDRVVQRAIIDIAAMSTVRQLLPETLLPPSEGFPTRDKLSDLQSTVGALGVVRQRFDTVSHWAMIHDQLGRFLLTGLFHDAPARQAAGLAAAQNPDHLRLMVLARIASNPMIAHPDLVELAETFATSIFKIDPGQGRADFALYWREALEALDAMPKTFRMTSRTFLHHGSISRRRIAKDEVMFPITDDERADLLRRAAADIEAALSLEHDPGGEPDLNLYNSLAHAYHDLAEVEERRGTSADQLAALRSKANKATSSAYKLNPDNSYVLELYVRDRLSGAEEDPDGPASVALEVLGIVYGAMQRETAELRRNALSRLADKAFDLLLRSADKMHDTEPATEGDAIQQALSALGEGMAQREGMALADFPRVNRIDAAARLGHPLLRSNAQAVRLRYILVCLDQPKDFGVQLELLETLDGNRAILSPQLELELAILMHQRNRHHEASRRFQKLRQLWARGEHYVEVPDRLRWLLDQVTGQRRQVRARIASGGDGARLHANVQELQNDRVPFRTAEFDNTQLRPGSNLSGLISFGHNGPLLRPLTAG
>NZ_CP023454.1|WP_096518239.1|1250272_1250983_+|hypothetical-protein
MIGLVETYANGKGWNVGTANVLVEGTSDVLYLRLARDLWKRESKHDLFGSGFAVFEAGLRDDGGVQGVVRELQALRQMASLDTAGRMAERKFVGLFDNDDAGRRHASMLCKMDFRVKLYRDVFLLNPVMPESNGALGADLQRRTEAQNRSCAGLDWEIEDFLPEDLVRGFCNANPGALERERRLAGRVHRDFSKDGKRQLQAYIKREAVVEDMLDVIRLICALRDYLGLEYKTMLP
>NZ_CP023454.1|WP_096518240.1|1251171_1252833_-|recombinase-family-protein
MLRAAIYARFSSQLQREASIEDQVRLCQERASREGWQVTEVFSDMALSGAALLRPGLQSLLDRAGRGEIDVILAEALDRLSRDQADVATLYKRLSFYGVQIVTLAEGAVSELHVGLKGTMNQLFLKDLAAKTRRGLRGRVEAGASGGGNSYGYDVVRRLGSDGLPITGERRINAAEAAIIRRIFTDFAAGQSPKAIAKALNAEKVPGPRGSAWRDTAIRGHRQRGTGILNNELYIGKLTWNRLRYVKDPETGKRVSRLNPKAEWITTEVPDLRIMDDALWAGVKRRQGEIDAEPRVQAIKATRFWEQKRKTHLLTGLLRCGSCGGGFAAVGKDYLACSAARKLGTCSQKRSFRRDDLEALVLDLLRERLMQPEAVAAFVAAYGKQVNAGRADESAKRARLESEQAQLSRHLNGLYEAIADGLRTPGLKAKLEDLEARKAAIETALDAPLPSPVRLHPGLSEIYRRKVTDLAATLSDPAIRSQALDAIRGLIESVTVVQTAAGTILELQGALTAMLAFAQNAKSKPGEELAEADVVGSVKVVAGAGFEPATFRL
>NZ_CP023454.1|WP_096518241.1|1252832_1253873_-|site-specific-integrase
MSLVLPYAGWPEPDRRMWEALCRDAGPLDDPGALARLRATSRHSLFLRYGRWLQWLATTDPGVLSLPPADRASLPRLQAWLADLAHCAPMTQLMFIDALLRLLRAAAPERDWTAELRLRALLKRQAGRGDPTRKRGRILSSKVLLEAGLHHAGAHADAAATPLEALKRRRDGTMIALLALLPMRRRSFCELTLGHSVHVTPTEVTISLSETMTKTGVPWETAVPAQVDPLLRRYITEVRPALMARGTNRHDRLWVGKKGEVLEGDYLTQRIAKLTLALTGKRVPPHFFRDAAATTLARISPDSARLIRPVLAHSGFRTAERHYIHAQTIEAGRDYAALIRKLKGDR
>NZ_CP023454.1|WP_157748766.1|1254365_1254581_-|hypothetical-protein
MRSTAWRRWVAALLTISKKLEKLDKTKAKGKDAKPLTAIARTTPRESGAETEDNRPDPSNFGRDTFPGFDA
>NZ_CP023454.1|WP_157748767.1|1254538_1254886_-|hypothetical-protein
MRMTPREIEDRLEEAAYTLRNLPEKDRPRGYGNSWPPVVHDAKHAYGYTPERPMRVIPSAAAISRMEECFDWLLLLDPEDARIVCSEPRVLAGGRCASGLVWCDPRPGAAGWPLC
>NZ_CP023454.1|WP_096518244.1|1254916_1255825_-|helix-turn-helix-domain-containing-protein
MSHRATNWAIQQRGLAPATKLVLWHLCDRHNPDYGCFPSQDQLAADAEISRASLNTHLDKLEQAGLIRRERRLDDDTKRQRTTRYFLGFEEEFTPKPCPDSGHGSTPEPCPDLAKSRVQNLDTNPVSKEPVITTARDAGATREGRAEVSAGDDGPDLDAAEIACLATCGERMTPAARAAITATSATIGAWLKAGYDLELDVLPVIAERTAKPRGSPIRTWEYFSQAIAARHARRIAQAARPKGAGEAGAGPALSSDDRLARLAAWLNSGAYVPPSAVTNTQRDALLRAGFVTEATLRAHQVY

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP023454_1	1.1\|1242838\|23\|NZ_CP023454\|CRISPRCasFinder	1242838-1242860	23	NZ_CP045329	Labrenzia sp. THAF191b plasmid pTHAF191b_a, complete sequence	132376-132398	2	0.913
NZ_CP023454_1	1.1\|1242838\|23\|NZ_CP023454\|CRISPRCasFinder	1242838-1242860	23	NZ_CP045335	Labrenzia sp. THAF191a plasmid pTHAF191a_b, complete sequence	424140-424162	2	0.913
NZ_CP023454_1	1.1\|1242838\|23\|NZ_CP023454\|CRISPRCasFinder	1242838-1242860	23	NZ_CP045345	Labrenzia sp. THAF187b plasmid pTHAF187b_a, complete sequence	273223-273245	2	0.913
NZ_CP023454_1	1.1\|1242838\|23\|NZ_CP023454\|CRISPRCasFinder	1242838-1242860	23	NC_009427	Novosphingobium aromaticivorans DSM 12444 plasmid pNL2, complete sequence	207913-207935	3	0.87

1. spacer 1.1|1242838|23|NZ_CP023454|CRISPRCasFinder matches to NZ_CP045329 (Labrenzia sp. THAF191b plasmid pTHAF191b_a, complete sequence) position: , mismatch: 2, identity: 0.913

tttcggcattttccggacacggc	CRISPR spacer
tttcggcaatttccggacccggc	Protospacer
******** ********* ****

2. spacer 1.1|1242838|23|NZ_CP023454|CRISPRCasFinder matches to NZ_CP045335 (Labrenzia sp. THAF191a plasmid pTHAF191a_b, complete sequence) position: , mismatch: 2, identity: 0.913

tttcggcattttccggacacggc	CRISPR spacer
tttcggcaatttccggacccggc	Protospacer
******** ********* ****

3. spacer 1.1|1242838|23|NZ_CP023454|CRISPRCasFinder matches to NZ_CP045345 (Labrenzia sp. THAF187b plasmid pTHAF187b_a, complete sequence) position: , mismatch: 2, identity: 0.913

tttcggcattttccggacacggc	CRISPR spacer
tttcggcaatttccggacccggc	Protospacer
******** ********* ****

4. spacer 1.1|1242838|23|NZ_CP023454|CRISPRCasFinder matches to NC_009427 (Novosphingobium aromaticivorans DSM 12444 plasmid pNL2, complete sequence) position: , mismatch: 3, identity: 0.87

tttcggcattttccggacacggc	CRISPR spacer
tttcggcattttccggacaccat	Protospacer
******************** ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1166645 : 1186798

Emiliania_huxleyi_virus(28.57%)

portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096518176.1\|1166645_1167281_-	hypothetical protein	F8TVB6	EBPR_siphovirus	1.1e-58	55.8
WP_096518177.1\|1167514_1169398_-	DUF2793 domain-containing protein	A0A1V0DY81	Dinoroseobacter_phage	5.4e-21	36.4
WP_096518178.1\|1169410_1173382_-	hypothetical protein	A0A0B5A7K5	Paracoccus_phage	4.3e-254	40.3
WP_096518179.1\|1173387_1173831_-	peptidase	F4YXU4	Roseobacter_phage	2.4e-28	43.5
WP_096518180.1\|1173823_1174729_-	DUF2163 domain-containing protein	A0A1V0DY93	Dinoroseobacter_phage	1.3e-60	43.1
WP_096518181.1\|1174725_1175025_-	hypothetical protein	NA	NA	NA	NA
WP_096518182.1\|1175021_1175648_-	DUF2460 domain-containing protein	A0A0B5A2K3	Paracoccus_phage	2.1e-62	56.8
WP_096518183.1\|1175648_1177745_-	hypothetical protein	A0A0B5A0F2	Paracoccus_phage	3.3e-19	29.1
WP_096518184.1\|1177741_1177945_-	hypothetical protein	G8DH53	Emiliania_huxleyi_virus	7.5e-06	62.5
WP_096518185.1\|1178013_1178421_-	hypothetical protein	NA	NA	NA	NA
WP_096518186.1\|1178443_1179388_-	hypothetical protein	G8DH51	Emiliania_huxleyi_virus	9.1e-86	51.4
WP_096518187.1\|1179417_1179858_-	acyl-CoA transferase	G8DH50	Emiliania_huxleyi_virus	7.3e-30	52.5
WP_096518188.1\|1179997_1180681_-	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA
WP_157748761.1\|1180677_1181757_-	hypothetical protein	NA	NA	NA	NA
WP_096518190.1\|1181939_1182578_-	hypothetical protein	G8DH49	Emiliania_huxleyi_virus	1.7e-43	49.3
WP_096518191.1\|1182574_1182889_-	hypothetical protein	NA	NA	NA	NA
WP_023916751.1\|1182890_1183229_-	DUF2190 family protein	A0A2I7QRW1	Vibrio_phage	2.1e-05	37.6
WP_096518192.1\|1183254_1185273_-	peptidase U35	A0A2I7QRU0	Vibrio_phage	7.9e-71	30.2
WP_096518193.1\|1185277_1186798_-\|portal	phage portal protein	B7SYD6	Stenotrophomonas_phage	4.0e-83	39.5

DBSCAN-SWA_2

2058416 : 2106029

Acinetobacter_phage(12.5%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096518900.1\|2058416_2059546_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	8.1e-57	43.9
WP_096518901.1\|2060355_2061975_-	5-guanidino-2-oxopentanoate decarboxylase	E5EQ70	Micromonas_sp._RCC1109_virus	9.0e-25	26.7
WP_096518902.1\|2061983_2062802_-	ABC transporter permease	NA	NA	NA	NA
WP_096518903.1\|2062798_2063620_-	ABC transporter permease	NA	NA	NA	NA
WP_096520356.1\|2063673_2064789_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_096518904.1\|2064851_2065925_-	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	2.6e-20	52.7
WP_096518905.1\|2066027_2066912_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_096518906.1\|2067114_2068707_+	peptidase M20	NA	NA	NA	NA
WP_096518907.1\|2068726_2069650_+	amidinotransferase	NA	NA	NA	NA
WP_096518908.1\|2069698_2071051_+	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_157748798.1\|2071116_2071377_-	hypothetical protein	NA	NA	NA	NA
WP_157748799.1\|2071516_2071780_-	hypothetical protein	NA	NA	NA	NA
WP_096518910.1\|2072088_2072808_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_096518911.1\|2072819_2073707_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_096518912.1\|2073706_2075041_+	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_096518914.1\|2075216_2077793_-	aconitate hydratase AcnA	NA	NA	NA	NA
WP_096518915.1\|2077789_2078677_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_096518916.1\|2078694_2080194_-	tripartite tricarboxylate transporter TctA	NA	NA	NA	NA
WP_096518917.1\|2080201_2080684_-	tricarboxylic transporter	NA	NA	NA	NA
WP_096518918.1\|2080735_2081698_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_096518919.1\|2081799_2082876_+	AbrB family transcriptional regulator	NA	NA	NA	NA
WP_157748800.1\|2083256_2083457_+	hypothetical protein	NA	NA	NA	NA
WP_157748874.1\|2083493_2085449_-	type VI secretion system ATPase TssH	H6X3M6	Enterobacteria_phage	2.2e-54	26.4
WP_096518223.1\|2086176_2087404_+\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	3.3e-104	66.5
WP_096518920.1\|2087889_2088207_+	DUF1153 domain-containing protein	NA	NA	NA	NA
WP_096518921.1\|2088203_2089025_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_096518922.1\|2089576_2090152_-	HupE/UreJ family protein	NA	NA	NA	NA
WP_096518923.1\|2090367_2090679_+	urease subunit gamma	NA	NA	NA	NA
WP_096520357.1\|2090767_2091205_+	urease subunit beta	NA	NA	NA	NA
WP_096518924.1\|2091246_2092959_+	urease subunit alpha	NA	NA	NA	NA
WP_096518925.1\|2092965_2093556_+	hypothetical protein	NA	NA	NA	NA
WP_096518926.1\|2093552_2094275_+	hypothetical protein	NA	NA	NA	NA
WP_096518927.1\|2094296_2094911_+	urease accessory protein UreG	NA	NA	NA	NA
WP_096518928.1\|2094912_2095779_+	urease accessory protein UreD	NA	NA	NA	NA
WP_096518921.1\|2095847_2096669_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_096518920.1\|2096665_2096983_-	DUF1153 domain-containing protein	NA	NA	NA	NA
WP_157748801.1\|2097279_2098107_+	hypothetical protein	A0A1I9KF49	Aeromonas_phage	8.1e-14	32.4
WP_096518930.1\|2098332_2099037_-	ABC transporter ATP-binding protein	A0A1M7XV31	Cedratvirus	9.0e-14	30.0
WP_096518931.1\|2099039_2099795_-	ABC transporter ATP-binding protein	A0A2H4UUX5	Bodo_saltans_virus	2.1e-08	23.8
WP_096518932.1\|2099794_2100913_-	urea ABC transporter permease	NA	NA	NA	NA
WP_096518933.1\|2100918_2101809_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_096518934.1\|2101870_2103139_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_096518935.1\|2103676_2103889_+	DUF1153 domain-containing protein	NA	NA	NA	NA
WP_096518920.1\|2103930_2104248_+	DUF1153 domain-containing protein	NA	NA	NA	NA
WP_096518921.1\|2104244_2105066_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_096518921.1\|2105207_2106029_+\|transposase	IS3 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP023455

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP023454

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection