CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_AP017615	Escherichia coli strain 20Ec-P-124 plasmid pMRY16-002_5, complete sequence	0 crisprs	NA	0	0
NZ_AP017614	Escherichia coli strain 20Ec-P-124 plasmid pMRY16-002_4, complete sequence	0 crisprs	NA	0	0
NZ_AP017613	Escherichia coli strain 20Ec-P-124 plasmid pMRY16-002_3, complete sequence	0 crisprs	NA	0	1
NZ_AP017610	Escherichia coli strain 20Ec-P-124	3 crisprs	DinG,cas3,DEDDh,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	16	10
NZ_AP017616	Escherichia coli strain 20Ec-P-124 plasmid pMRY16-002_6, complete sequence	0 crisprs	NA	0	0
NZ_AP017611	Escherichia coli strain 20Ec-P-124 plasmid pMRY16-002_1, complete sequence	0 crisprs	NA	0	1
NZ_AP017612	Escherichia coli strain 20Ec-P-124 plasmid pMRY16-002_2, complete sequence	1 crisprs	DEDDh	3	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_AP017610_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP017610_1

841369-841510

Orphan

Consensus_repeat	Method
GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGAAATGCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP017610_1

>merge|NZ_AP017610|1|841369-841510|CRISPRCasFinder
GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGAAATGCAGAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAAACAGCGCCGGATGCGGCGTGAATGCCTTATCCGGCCTACAAAAGAAATGCAG

>NZ_AP017610|1|1|841369-841510|CRISPRCasFinder
GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGAAATGCAG	AAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAAACAGC
GCCGGATGCGGCGTGAATGCCTTATCCGGCCTACAAAAGAAATGCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP017610.1\|WP_000025458.1\|846976_847846_+\|succinate--CoA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|180194
NZ_AP017610.1\|WP_000099823.1\|844499_845717_+\|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase	unknown	unknown	gnl\|CDD\|235571
NZ_AP017610.1\|WP_000263347.1\|838079_838484_+\|succinate-dehydrogenase-cytochrome-b556-subunit	unknown	unknown	gnl\|CDD\|181900
NZ_AP017610.1\|WP_000472419.1\|835146_835713_-\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|226069
NZ_AP017610.1\|WP_000785834.1\|836102_837386_-\|citrate-(Si)-synthase	unknown	unknown	gnl\|CDD\|180164
NZ_AP017610.1\|WP_072252819.1\|832636_835096_-\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|225729
NZ_AP017610.1\|WP_000538731.1\|848085_849201_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_AP017610.1\|WP_000034602.1\|853380_853674_+\|cyd-operon-protein-YbgE	unknown	unknown	gnl\|CDD\|236721
NZ_AP017610.1\|WP_000143536.1\|831890_832622_-\|molecular-chaperone	unknown	unknown	gnl\|CDD\|225663
NZ_AP017610.1\|WP_000254365.1\|838477_838825_+\|succinate-dehydrogenase-membrane-anchor-subunit	unknown	unknown	gnl\|CDD\|181901
NZ_AP017610.1\|WP_001272438.1\|830832_831894_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|366088
NZ_AP017610.1\|WP_001098384.1\|853823_854228_+\|tol-pal-system-associated-acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|182742
NZ_AP017610.1\|WP_001181473.1\|841683_844485_+\|2-oxoglutarate-dehydrogenase-E1-component	unknown	unknown	gnl\|CDD\|236499
NZ_AP017610.1\|WP_001235263.1\|840606_841323_+\|succinate-dehydrogenase-iron-sulfur-subunit-SdhB	unknown	unknown	gnl\|CDD\|235652
NZ_AP017610.1\|WP_001305582.1\|837591_837699_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017610.1\|WP_000775540.1\|838824_840591_+\|succinate-dehydrogenase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|181594
NZ_AP017610.1\|WP_000270282.1\|853267_853381_+\|cytochrome-bd-I-oxidase-subunit-CydX	unknown	unknown	gnl\|CDD\|227227
NZ_AP017610.1\|WP_000884361.1\|850529_852098_+\|cytochrome-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|185052
NZ_AP017610.1\|WP_001048602.1\|845810_846977_+\|ADP-forming-succinate--CoA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234813
NZ_AP017610.1\|WP_000568275.1\|852113_853253_+\|cytochrome-d-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|184965

Protein	Function_ID	Function_description	E-value
NZ_AP017610.1\|WP_000025458.1\|846976_847846_+\|succinate--CoA-ligase-subunit-alpha	gnl\|CDD\|180194	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated.	0
NZ_AP017610.1\|WP_000263347.1\|838079_838484_+\|succinate-dehydrogenase-cytochrome-b556-subunit	gnl\|CDD\|181900	PRK09487, sdhC, succinate dehydrogenase cytochrome b556 subunit.	3.00507e-82
NZ_AP017610.1\|WP_000472419.1\|835146_835713_-\|type-1-fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	2.40726e-36
NZ_AP017610.1\|WP_000785834.1\|836102_837386_-\|citrate-(Si)-synthase	gnl\|CDD\|180164	PRK05614, gltA, citrate synthase.	0
NZ_AP017610.1\|WP_072252819.1\|832636_835096_-\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|225729	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion].	0
NZ_AP017610.1\|WP_000538731.1\|848085_849201_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	6.43887e-18
NZ_AP017610.1\|WP_000034602.1\|853380_853674_+\|cyd-operon-protein-YbgE	gnl\|CDD\|236721	PRK10588, PRK10588, hypothetical protein; Provisional.	9.30037e-57
NZ_AP017610.1\|WP_000143536.1\|831890_832622_-\|molecular-chaperone	gnl\|CDD\|225663	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion].	1.28071e-73
NZ_AP017610.1\|WP_000254365.1\|838477_838825_+\|succinate-dehydrogenase-membrane-anchor-subunit	gnl\|CDD\|181901	PRK09488, sdhD, succinate dehydrogenase membrane anchor subunit.	5.54037e-58
NZ_AP017610.1\|WP_001272438.1\|830832_831894_-\|fimbrial-protein	gnl\|CDD\|366088	pfam00419, Fimbrial, Fimbrial protein.	0.000216347
NZ_AP017610.1\|WP_001098384.1\|853823_854228_+\|tol-pal-system-associated-acyl-CoA-thioesterase	gnl\|CDD\|182742	PRK10800, PRK10800, acyl-CoA thioesterase YbgC; Provisional.	7.48363e-91
NZ_AP017610.1\|WP_001181473.1\|841683_844485_+\|2-oxoglutarate-dehydrogenase-E1-component	gnl\|CDD\|236499	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed.	0
NZ_AP017610.1\|WP_001235263.1\|840606_841323_+\|succinate-dehydrogenase-iron-sulfur-subunit-SdhB	gnl\|CDD\|235652	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed.	3.48257e-167
NZ_AP017610.1\|WP_000099823.1\|844499_845717_+\|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase	gnl\|CDD\|235571	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase.	0
NZ_AP017610.1\|WP_000270282.1\|853267_853381_+\|cytochrome-bd-I-oxidase-subunit-CydX	gnl\|CDD\|227227	COG4890, COG4890, Predicted outer membrane lipoprotein [Function unknown].	4.51563e-12
NZ_AP017610.1\|WP_000775540.1\|838824_840591_+\|succinate-dehydrogenase-flavoprotein-subunit	gnl\|CDD\|181594	PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed.	0
NZ_AP017610.1\|WP_001048602.1\|845810_846977_+\|ADP-forming-succinate--CoA-ligase-subunit-beta	gnl\|CDD\|234813	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta.	0
NZ_AP017610.1\|WP_000568275.1\|852113_853253_+\|cytochrome-d-ubiquinol-oxidase-subunit-II	gnl\|CDD\|184965	PRK15003, PRK15003, cytochrome d ubiquinol oxidase subunit II.	0
NZ_AP017610.1\|WP_000884361.1\|850529_852098_+\|cytochrome-ubiquinol-oxidase-subunit-I	gnl\|CDD\|185052	PRK15097, PRK15097, cytochrome bd-I ubiquinol oxidase subunit CydA.	0

>NZ_AP017610.1|WP_001235263.1|840606_841323_+|succinate-dehydrogenase-iron-sulfur-subunit-SdhB
MRLEFSIYRYNPDVDDAPRMQDYTLEAEEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSDGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYLLNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLLQRNA
>NZ_AP017610.1|WP_000775540.1|838824_840591_+|succinate-dehydrogenase-flavoprotein-subunit
MKLPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMAIRAGVPVQDMEMWQFHPTGIAGAGVLVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREGRGCDGPWGPHAKLKLDHLGKEVLESRLPGILELSRTFAHVDPVKEPIPVIPTCHYMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESIAEQGALRDASESDVEASLDRLNRWNNNRNGEDPVAIRKALQECMQHNFSVFREGDAMAKGLEQLKVIRERLKNARLDDTSSEFNTQRVECLELDNLMETAYATAVSANFRTESRGAHSRFDFPDRDDENWLCHSLYLPESESMTRRSVNMEPKLRPAFPPKIRTY
>NZ_AP017610.1|WP_000254365.1|838477_838825_+|succinate-dehydrogenase-membrane-anchor-subunit
MVSNASALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASAFTKVFTLLALFSILIHAWIGMWQVLTDYVKPLALRLMLQLVIVVALVVYVIYGFVVVWGV
>NZ_AP017610.1|WP_000263347.1|838079_838484_+|succinate-dehydrogenase-cytochrome-b556-subunit
MWALFMIRNVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITVVLSLLAGVLVW
>NZ_AP017610.1|WP_001305582.1|837591_837699_-|hypothetical-protein
MRKSYEVGISPKINLCNSVEVLTNSFGTVISGRQV
>NZ_AP017610.1|WP_000785834.1|836102_837386_-|citrate-(Si)-synthase
MADTKAKLTLNGDTAVELDVLKGTLGQDVIDIRTLGSKGVFTFDPGFTSTASCESKITFIDGDEGILLHRGFPIDQLATDSNYLEVCYILLNGEKPTQEQYDEFKTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGALAAFYHDSLDVNNPRHREIAAFRLLSKMPTMAAMCYKYSIGQPFVYPRNDLSYAGNFLNMMFSTPCEPYEVNPILERAMDRILILHADHEQNASTSTVRTAGSSGANPFACIAAGIASLWGPAHGGANEAALKMLEEISSVKHIPEFVRRAKDKNDSFRLMGFGHRVYKNYDPRATVMRETCHEVLKELGTKDDLLEVAMELENIALNDPYFIEKKLYPNVDFYSGIILKAMGIPSSMFTVIFAMARTVGWIAHWSEMHSDGMKIARPRQLYTGYEKRDFKSDIKR
>NZ_AP017610.1|WP_000472419.1|835146_835713_-|type-1-fimbrial-protein
MFKGQKTLAALAVSLLFTAPVYAADEGSGEIHFKGEVIEAPCEIHQDDIDKEVELGQVTTSHINQSHHSDAVAVDLRLVNCDLENSNNGSGGKISKVAVTFDSSAKTTGADPILNNTSTGEATGVGVRLMNKDQSNIVLGTATPDIDLAPTSSEQTLNFFAWMEQIDQATPVTPGAVTANATYVLDYK
>NZ_AP017610.1|WP_072252819.1|832636_835096_-|fimbrial-biogenesis-outer-membrane-usher-protein
MDTVNIYRLSFISCLVMAIPSALAVEFNLNVLDKSMRDRIDISLLKEKGGIAPGEYFVSVTVNNNQISNGQKIDWKKNGDQTIPCINDLLVDKFGLKPEVRQSLPRLNQCVDFSSRPEILFIFDQASQQLNITIPQAWLAWHSDNWTPPSTWKEGVAGVLMDYNLFASSYRPQDGSNSTNLNAYGTAGINAGAWRLRSDYQLNQTDSDDNHEQSGEISRTYLFRPLPQLGSKLTLGETDFSSNIFDGFSYTGAALASDDRMLPWELRGYAPQISGIAQTNATVTVSHSGRVIYQKKVPPGPFIIDDLNQSVQGTLDVKVTEEDGRANNFQVSAASTPFLTRQGQVRYKLAAGQPRTSMSHQTENETFFSNEVSWGMLSNTSLYGGLLISGDDYHSAAMGIGQNMLWLGALSFDVTWASSQFDTQQDERGLSYRFNYSKQVDATDSTISLAAYRFSDRHFHSYANYLDHKYNNSDAQDEKQTISLSVGQPITPLNLNLYANLLHQTWWNADASTTANITAGFNVDIGNWRDISISTSFNTTHYEDKDRDNQIYLSISLPFGNGGRVGYDMQNSSHSTTHRMSWNDTLDERNSWGMSTGLQSDRPDNGVQVSGNYQHLSSAGEWDISGTYAANDYSSVSSSWSGSFTATQYGAAFHRRSSTNEPRLMVSTDGVADIPVQGNLDYTNHFGIAVVPLISSYQPSTVAVNMNDLPDGVTVAENVIKETWIEGAIGYKSLASRSGKDVNVIIRNASGQFPPLGADIRQDNSGISVGMVGEEGHAWLSGVAENQMLTVVWGDSQHCSLHLPEHMEDTANRLILPCH
>NZ_AP017610.1|WP_000143536.1|831890_832622_-|molecular-chaperone
MTFMKGLPLLLLVASLCSHAALQPDRTRIVFNANDKATSLRVDNRSDKLPYLAYSWLENEKGEKSDDLLVALPPIQRLEPKATTQVRIVKQASTTKLPGDRETLFFYNMREIPPSPEKNSGHAVLQVAIQSRIKVFWRPAALRKKAGEKVELQLQVSQQGNQLTLKNPTAYYLTIAYLGRNEKGVLPGFKTVMVAPFSTVITNTGSYSGSQFYLGYMDDYGALRMTTLNCSGQCRLQAVEAKK
>NZ_AP017610.1|WP_001272438.1|830832_831894_-|fimbrial-protein
MSAGKGVLLVICLVFLPLKSALALNCYFGTSGGTVEKSEAIQPFAVPGNAKPGDKIWESDDIKIPVYCDNNTNGNFESEHVYAWVNPYPGVQDRYYQLGVTYNGVDYDASLGKSRIDTNQCIDSKNINIYTPEQIIAMGWQNKICSGDPANIHMSRTFLARMRLYVKIREMPPHDYQSTLSDYIVVQFDGAGSVNEDPTAQNLKYHITGLENIRVLDCSVNFSISPETQVIDFGKFNLLDIRRHTMSKTFSIKTTKSQNDQCTDGFKVSSSFYTEETLIEEDKALLIGNGLKLRLLDENSSPYTFNKYSEYADFTSDMLIYEKTYTAELSSIPGTPIEAGPFDTVVLFKINYN
>NZ_AP017610.1|WP_001181473.1|841683_844485_+|2-oxoglutarate-dehydrogenase-E1-component
MQNSALKAWLDSSYLSGANQSWIEQLYEDFLTDPDSVDANWRSTFQQLPGTGVKPDQFHSQTREYFRRLAKDASRYSSTISDPDTNVKQVKVLQLINAYRFRGHQHANLDPLGLWQQDKVADLDPSFHDLTEADFQETFNVGSFASGKETMKLGELLEALKQTYCGPIGAEYMHITSTEEKRWIQQRIESGRATFNSEEKKRFLSELTAAEGLERYLGAKFPGAKRFSLEGGDALIPMLKEMIRHAGNSGTREVVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIVSPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSNPLDARSTPYCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEPSATQPLMYQKIKKHPTPRKIYADKLEQEKVATLEDATEMVNLYRDALDAGDCVVAEWRPMNMHSFTWSPYLNHEWDEEYPNKVEMKRLQELAKRISTVPEAVEMQSRVAKIYGDRQAMAAGEKLFDWGGAENLAYATLVDEGIPVRLSGEDSGRGTFFHRHAVIHNQSNGSTYTPLQHIHNGQGAFRVWDSVLSEEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVIDQFISSGEQKWGRMCGLVMLLPHGYEGQGPEHSSARLERYLQLCAEQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELANGTFLPAIGEIDELDPKGVKRVVMCSGKVYYDLLEQRRKNNQHDVAIVRIEQLYPFPHKAMQEVLQQFAHVKDFVWCQEEPLNQGAWYCSQHHFREVIPFGASLRYAGRPASASPAVGYMSVHQKQQQDLVNDALNVE
>NZ_AP017610.1|WP_000099823.1|844499_845717_+|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase
MSSVDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLREGNSAGKETSAKSEEKASTPAQRQQASLEEQNNDALSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLAKAPAKESAPAAAAPAAQPALAARSEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV
>NZ_AP017610.1|WP_001048602.1|845810_846977_+|ADP-forming-succinate--CoA-ligase-subunit-beta
MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRELAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQPDLREMRDQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKGLTDAAQQVVAAVEGK
>NZ_AP017610.1|WP_000025458.1|846976_847846_+|succinate--CoA-ligase-subunit-alpha
MSILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMIGPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVTKPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK
>NZ_AP017610.1|WP_000538731.1|848085_849201_+|tetratricopeptide-repeat-protein
MGVNSDVYAADVNIDILSATVKDKRIEGVSVTLQRNGAQSVSGTTNASGSVNLGSTFADDQDALLIVKKEGYSNLVVKCSCAGMTYAISPAMTSLDGMRVVLSWGEKPFDLDSHLIFPGGHIYFDSKEGTDANLDVDDTDSYGSETVTISKKHFGESYIYAVQDYSNKGLPNSNYLSASKAKVFVYVGSSLVRSYSVPAGKRGNIWTVFKLNPNGEFEDINSVTSANFNDTTLGVRDLATVIMPATGSSTPASPAMQNSGDTQLARKYNREGEAVYKTGQLEQAIQLFQQATELDGNYGQAFSNLGLAYQKNGNIAEAIWANRKAISLASGANAATMRANSYYNIAKIYETAGQDADALQYYQLALHDAIL
>NZ_AP017610.1|WP_000884361.1|850529_852098_+|cytochrome-ubiquinol-oxidase-subunit-I
MLDIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSGKQIYKDMTKFWGKLFGINFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGLFFFGWDRLGKVQHMCVTWLVALGSNLSALWILVANGWMQNPIASDFNFETMRMEMVSFSELVLNPVAQVKFVHTVASGYVTGAMFILGISAWYMLKGRDFAFAKRSFAIAASFGMAAVLSVIVLGDESGYEMGDVQKTKLAAIEAEWETQPAPAAFTLFGIPDQEEETNKFAIQIPYALGIIATRSVDTPVIGLKELMVQHEERIRNGMKAYSLLEQLRSGSTDQAVRDQFNSMKKDLGYGLLLKRYTPNVADATEAQIQQATKDSIPRVAPLYFAFRIMVACGFLLLAIIALSFWSVIRNRIGEKKWLLRAALYGIPLPWIAVEAGWFVAEYGRQPWAIGEVLPTAVANSSLTAGDLIFSMVLICGLYTLFLVAELFLMFKFARLGPSSLKTGRYHFEQSSTTTQPAR
>NZ_AP017610.1|WP_000568275.1|852113_853253_+|cytochrome-d-ubiquinol-oxidase-subunit-II
MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITKEDIERNTHSLY
>NZ_AP017610.1|WP_000270282.1|853267_853381_+|cytochrome-bd-I-oxidase-subunit-CydX
MWYFAWILGTLLACSFGVITALALEHVESGKAGQEDI
>NZ_AP017610.1|WP_000034602.1|853380_853674_+|cyd-operon-protein-YbgE
MSKIIATLYAVMDKRPLRALSFVMALLLAGCMFWDPSRFAAKTSELEIWHGLLLMWAVCAGVIHGVGFRPQKVLWQGIFCPLLADIVLIVGLIFFFF
>NZ_AP017610.1|WP_001098384.1|853823_854228_+|tol-pal-system-associated-acyl-CoA-thioesterase
MNTTLFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAENTLLNEAEVLVVCVDPLKMKPRALPKSIVAEFKQ

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Crispr_ID: NZ_AP017610_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP017610_2

2978719-2979967

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder

20 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_AP017610_2

>merge|NZ_AP017610|2|2978719-2979967|CRT,PILER-CR,CRISPRCasFinder
GGGAGTTCTACCGCAGGGGCGGGGAATTCTAAGTGATATCCATCATCGCATCCAGTGCGTCCGGTTTATCCCCGCTGACGCGGGGAACACACATGAATGTCGGTTCAGACCGTGTTTTTACCCGGTTTATCCCCGCTGGCGCGGGGAACACAGCGCGGGCTAATGTCTGCTCTGAATCATCACCGGTTTATCCCCGCTGGCGCGGGGAACACCATGCTGCCGTCGTTTACGCCGTTCTTAATTTCGGTTTATCCCCGCTGGCGCGGGGAACACATCAAACTGCTGCAACGGCCAGCGCAGCCACGCGGTTTATCCCCGCTGGCGCGGGGAACACTCGTTTTGTTAGCCAGCCGTCGCGCACCAGTTCGGTTTATCCCCGCTGGCGCGGGGAACACGTATTGAATCGTGTGTAAATTCGCGGCGGCCCCGGTTTATCCCCGCTGGCGCGGGGAACACACATTCGCTGGCGCGGCTGAATCAACTATCGCCGGTTTATCCCCGCTGGCGCGGGGAACACAGTGAGTATTTCGCGGACCTCTTCACCGATCGCGGTTTATCCCCGCTGGCGCGGGGAACACGCGGAAACAGCTTCCTGGATGCTGCGTTATTGCGGTTTATCCCCGCTGGCGCGGGGAACACGGTGGACGGATTTTCTATATTCCCACCGTCCGCGGTTTATCCCCGCTGGCGCGGGGAACACTCGATCGCAAATATGCTCCGATTGATGAAAAGCGGTTTATCCCCGCTGGCGCGGGGAACACTGACTAAATCAGCGCCCGGTCCGGGATATTGTCGGTTTATCCCCGCTGGCGCGGGGAACACAGTGGCAGGCCGGTAATATGAAAACAACCGAGCGGTTTATCCCCGCTGGCGCGGGGAACACCCCTTGTATTTATGCACCCAGTCGTTTACCGACGGTTTATCCCCGCTGGCGCGGGGAACACTGGCTAAGAGCAAAAACAGGGGTATGCAGACGCGGTTTATCCCCGCTGGCGCGGGGAACACCTTTGACCGAGTCTGATATTGCCCGTGCCTGCCGGTTTATCCCCGCTGGCGCGGGGAACACGCGGGCGCGCATTCAACTGGACGCTATCAGGGCGGTTTATCCCCGCTGGCGCGGGGAACACACTCACGGGAAGGAAGTGCCCAGCGGCGGCACCGGTTTATCCCCGCTGGCGCGGGGAACACCAAAAAATAAAATAAAGGCAATGTTTTCAATGCGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_AP017610|2|1|2978719-2979967|CRT
GGGAGTTCTACCGCAGGGGCGGGGAATTC	TAAGTGATATCCATCATCGCATCCAGTGCGTC
CGGTTTATCCCCGCTGACGCGGGGAACAC	ACATGAATGTCGGTTCAGACCGTGTTTTTACC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCGCGGGCTAATGTCTGCTCTGAATCATCAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CATGCTGCCGTCGTTTACGCCGTTCTTAATTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCAAACTGCTGCAACGGCCAGCGCAGCCACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCGTTTTGTTAGCCAGCCGTCGCGCACCAGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTATTGAATCGTGTGTAAATTCGCGGCGGCCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACATTCGCTGGCGCGGCTGAATCAACTATCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGTGAGTATTTCGCGGACCTCTTCACCGATCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGGAAACAGCTTCCTGGATGCTGCGTTATTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTGGACGGATTTTCTATATTCCCACCGTCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCGATCGCAAATATGCTCCGATTGATGAAAAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGACTAAATCAGCGCCCGGTCCGGGATATTGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGTGGCAGGCCGGTAATATGAAAACAACCGAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCCTTGTATTTATGCACCCAGTCGTTTACCGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGCTAAGAGCAAAAACAGGGGTATGCAGACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTTTGACCGAGTCTGATATTGCCCGTGCCTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGGGCGCGCATTCAACTGGACGCTATCAGGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACTCACGGGAAGGAAGTGCCCAGCGGCGGCAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAAAAAATAAAATAAAGGCAATGTTTTCAATG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_AP017610|2|1|2978780-2979967|PILER-CR
CGGTTTATCCCCGCTGACGCGGGGAACAC	ACATGAATGTCGGTTCAGACCGTGTTTTTACC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCGCGGGCTAATGTCTGCTCTGAATCATCAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CATGCTGCCGTCGTTTACGCCGTTCTTAATTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCAAACTGCTGCAACGGCCAGCGCAGCCACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCGTTTTGTTAGCCAGCCGTCGCGCACCAGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTATTGAATCGTGTGTAAATTCGCGGCGGCCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACATTCGCTGGCGCGGCTGAATCAACTATCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGTGAGTATTTCGCGGACCTCTTCACCGATCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGGAAACAGCTTCCTGGATGCTGCGTTATTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTGGACGGATTTTCTATATTCCCACCGTCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCGATCGCAAATATGCTCCGATTGATGAAAAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGACTAAATCAGCGCCCGGTCCGGGATATTGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGTGGCAGGCCGGTAATATGAAAACAACCGAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCCTTGTATTTATGCACCCAGTCGTTTACCGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGCTAAGAGCAAAAACAGGGGTATGCAGACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTTTGACCGAGTCTGATATTGCCCGTGCCTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGGGCGCGCATTCAACTGGACGCTATCAGGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACTCACGGGAAGGAAGTGCCCAGCGGCGGCAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAAAAAATAAAATAAAGGCAATGTTTTCAATG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_AP017610|2|2|2978780-2979967|CRISPRCasFinder
CGGTTTATCCCCGCTGACGCGGGGAACAC	ACATGAATGTCGGTTCAGACCGTGTTTTTACC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCGCGGGCTAATGTCTGCTCTGAATCATCAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CATGCTGCCGTCGTTTACGCCGTTCTTAATTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCAAACTGCTGCAACGGCCAGCGCAGCCACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCGTTTTGTTAGCCAGCCGTCGCGCACCAGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTATTGAATCGTGTGTAAATTCGCGGCGGCCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACATTCGCTGGCGCGGCTGAATCAACTATCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGTGAGTATTTCGCGGACCTCTTCACCGATCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGGAAACAGCTTCCTGGATGCTGCGTTATTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTGGACGGATTTTCTATATTCCCACCGTCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCGATCGCAAATATGCTCCGATTGATGAAAAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGACTAAATCAGCGCCCGGTCCGGGATATTGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGTGGCAGGCCGGTAATATGAAAACAACCGAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCCTTGTATTTATGCACCCAGTCGTTTACCGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGCTAAGAGCAAAAACAGGGGTATGCAGACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTTTGACCGAGTCTGATATTGCCCGTGCCTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGGGCGCGCATTCAACTGGACGCTATCAGGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACTCACGGGAAGGAAGTGCCCAGCGGCGGCAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAAAAAATAAAATAAAGGCAATGTTTTCAATG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP017610.1\|WP_000490430.1\|2977660_2978698_+\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_AP017610.1\|WP_000517479.1\|2973588_2973900_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_AP017610.1\|WP_000372392.1\|2976500_2977409_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_AP017610.1\|WP_000039853.1\|2989236_2989971_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_AP017610.1\|WP_000063170.1\|2980063_2980357_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_AP017610.1\|WP_001295182.1\|2970592_2971354_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_AP017610.1\|WP_000144858.1\|2980353_2981277_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_AP017610.1\|WP_000085058.1\|2981905_2982652_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_AP017610.1\|WP_001173653.1\|2974466_2975072_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_AP017610.1\|WP_001219235.1\|2972380_2972860_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_AP017610.1\|WP_000281438.1\|2981273_2981924_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_AP017610.1\|WP_000956458.1\|2988820_2988973_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	unknown	unknown	gnl\|CDD\|366840
NZ_AP017610.1\|WP_000246133.1\|2972859_2973570_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_AP017610.1\|WP_001246104.1\|2974093_2974417_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_AP017610.1\|WP_001090371.1\|2975071_2976499_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_AP017610.1\|WP_000029335.1\|2983732_2984269_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_AP017610.1\|WP_000142617.1\|2985925_2988583_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_AP017610.1\|WP_000568955.1\|2971334_2972384_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_AP017610.1\|WP_000206444.1\|2982662_2983718_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_AP017610.1\|WP_001084113.1\|2984265_2985828_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192

Protein	Function_ID	Function_description	E-value
NZ_AP017610.1\|WP_000490430.1\|2977660_2978698_+\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_AP017610.1\|WP_000517479.1\|2973588_2973900_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	2.23098e-61
NZ_AP017610.1\|WP_000372392.1\|2976500_2977409_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_AP017610.1\|WP_000039853.1\|2989236_2989971_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.40583e-137
NZ_AP017610.1\|WP_000063170.1\|2980063_2980357_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	3.0872e-65
NZ_AP017610.1\|WP_001295182.1\|2970592_2971354_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
NZ_AP017610.1\|WP_000144858.1\|2980353_2981277_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.11358e-157
NZ_AP017610.1\|WP_000085058.1\|2981905_2982652_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	7.00414e-48
NZ_AP017610.1\|WP_001173653.1\|2974466_2975072_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	1.12214e-148
NZ_AP017610.1\|WP_001219235.1\|2972380_2972860_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.18126e-102
NZ_AP017610.1\|WP_000281438.1\|2981273_2981924_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	3.43159e-91
NZ_AP017610.1\|WP_000956458.1\|2988820_2988973_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	8.32243e-12
NZ_AP017610.1\|WP_000246133.1\|2972859_2973570_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.47016e-121
NZ_AP017610.1\|WP_001246104.1\|2974093_2974417_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
NZ_AP017610.1\|WP_001090371.1\|2975071_2976499_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_AP017610.1\|WP_000029335.1\|2983732_2984269_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	4.62446e-29
NZ_AP017610.1\|WP_000142617.1\|2985925_2988583_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	3.08303e-179
NZ_AP017610.1\|WP_000568955.1\|2971334_2972384_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_AP017610.1\|WP_000206444.1\|2982662_2983718_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	3.45361e-154
NZ_AP017610.1\|WP_001084113.1\|2984265_2985828_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0

>NZ_AP017610.1|WP_000490430.1|2977660_2978698_+|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEVFDKAGIAVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>NZ_AP017610.1|WP_000372392.1|2976500_2977409_-|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>NZ_AP017610.1|WP_001090371.1|2975071_2976499_-|sulfate-adenylyltransferase-subunit-CysN
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEETFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFSGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>NZ_AP017610.1|WP_001173653.1|2974466_2975072_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTPQQREQHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>NZ_AP017610.1|WP_001246104.1|2974093_2974417_-|DUF3561-family-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>NZ_AP017610.1|WP_000517479.1|2973588_2973900_-|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNNDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>NZ_AP017610.1|WP_000246133.1|2972859_2973570_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKHVVIAISPGDSRFAQLPLANHPQITVVDGGEERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAETGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>NZ_AP017610.1|WP_001219235.1|2972380_2972860_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALEDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYALGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>NZ_AP017610.1|WP_000568955.1|2971334_2972384_-|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVMEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGALRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAEETELQTLLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>NZ_AP017610.1|WP_001295182.1|2970592_2971354_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW
>NZ_AP017610.1|WP_000063170.1|2980063_2980357_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAIWLLEVRAGVYVGDTSKRIREMIWQQISQLAGCGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVDNQ
>NZ_AP017610.1|WP_000144858.1|2980353_2981277_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLSPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLAATVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALTEDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRQTYALLAKQYGVKWNGRKYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYDIADIIKFDSVVPKAFEIAARQPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPETLGDSGHRGRGG
>NZ_AP017610.1|WP_000281438.1|2981273_2981924_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTGQLSPAQLLHLVDRGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQERPAESDIFTIECRPFAPELRTGQSLCFNLRANPTICKAGKRHDLLMEAKRQVRGQVEGSDVWLHQQQAALDWLAAQGERSGFTLLDTSVDAYRQQQLRRENSRQLIQFSSVDYTGMLTVTDPGLFLQRLSQGYGKSRAFGCGLMLIKPGAEA
>NZ_AP017610.1|WP_000085058.1|2981905_2982652_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTVQMPKEVRKARYFSRREELSAPDLLSAIISRRDYYTDAWWMVAVATTPDAPYSLEQLQDGLRHPVFPLYLGRKSHPLALPLAPLLLEGNASDVLRNAYQQYQDSFRELKVSLPKLQDECWWEGEHDGLVASKILRRRDVPLNRQQWLFGERTINQGPWLSKEEPCTSQE
>NZ_AP017610.1|WP_000206444.1|2982662_2983718_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRVSSQSLKRAWRTSALFEQALAGHIGIRSGRIAREAATILIEKGIEEKKAIEWAAKIADYLGKAKNDKKPKDPLTNAETEQLVHISPAEFDAVKALAHQLAEEKRAPKEEDLALLRKDRMAVDIAMFGRMLANKPEFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASEDAGAGHLGETGFGSALFYTYICIDKDLLVENLGGDEALANQTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTEQPRSLAAAFYEPINGTLQLDVAVQRITTLRENMNTVYEQKTECASFDVMNKQGSMKDVLDFICA
>NZ_AP017610.1|WP_000029335.1|2983732_2984269_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVKEEHKATLRKWHEELQEKRGNRASLRRSTTVNDVCLSEGFRSLLMQTHTLWKIESQEWRFTALALVAAVAANVKAIDERQPFAAQLAAVMSEGRFTRLSAVKTPDELLRQLRRAVKLLNGSVNLISLADDIFRWCQESDDLLNHHRRQQRPTEFIRIRWALEYYQAGDADNEQN
>NZ_AP017610.1|WP_001084113.1|2984265_2985828_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNSFSLLTTPWLPVRFKDGTTGKLAPVHLADENVVDIAAPRADLQGAAWQFLLGLLQTSFAPKDHRRWDDIWEDGLEAEKLREALLPLEHAFQFGPDSPSFMQDFEALTGDKVPVASLLPEIPGVQTTKFNKDHFIKRGVTEHLCPQCSALALFSLQLNAPSGGKGYRTGLRGGGPMTTLIELQEYQGNQQTPLWRKMWLNVMPQDEADLPLPKKFDGLVFPWLGPTRTSELAGAVVTDDQVNKLQAYWGMPRRIRIDFNTTTVGNCDICGEQNDALLSLMTTKNYGANYAMWQHPLTPYRIPLKEGGEFYSVKPQPGGLIWRDWLGLIETGKSENNTELPALVVKLFNASSLKQAKVGLWGFGYDFDNMKARCWYEHHFPLLLNKKEGQIPKLRLAAQTASRILSLLRSALKEAWFSDPKGVRGDFSFVDIDFWNKTQHRFLRLVRQIEEGQDADELLGKWQKEIWLFARQDFDERVFTNPYEPVDLKRVMTARKKYFTTSAEKQSAKAAREKKQEAAE
>NZ_AP017610.1|WP_000142617.1|2985925_2988583_-|CRISPR-associated-helicase/endonuclease-Cas3
MTFFYFWGKTRRGEKDGGEDYHLLCWHSLDVAAMGYLMVKSNCFGLAGYFRQLGFADTELAAQFFAWLLCWHDIGKFARSFQQLYLHPQLKVPEGARKNYEKISHSTLGYWLWNHYLSECQELLPSSSLSPRKLKRVMEMWMPMTTGHHGRPPERMDELDNFLPEDKGAARDFLLAIKVLFPLIEIPTFWDDDEGVELIKQLSWYISATVVLADWTGSSTRYFPRVAQAMDIEDYWQKTLVQAQNALTVFPPKAESAPFTGINTLFPFIENPTPLQQKVLDLDISQPGPQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLFFGLPTMATANAMYDRLVKTWLAFYSPESRPSLVLAHSARTLMDRFNESLWSGDLVGSEEPDEQTFSQGCAAWFADSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQRDKLVAAFARGIEGQQEAPLLEKDDYPWLTHVTKSDVHSHRVATRKDVERSVSVGWLHSEQECIARIESAVSQGKCIAWIRNSVDDAIQVHRQLLARGVIPASSLSLFHSRFAFSDRQRIETETLARFGKEDCSQRAGKVLICTQVLEQSVDCDLDEMISDLAPVDLLIQRAGRLQRHIRDINGLLKRDGKDERSPPEFLILAPVWDDSPGDEWFGSAMRNSAYVYPDHGRIWLTQRVLREQGAIQMPHAARLLIESVYGEDVAMPEGFARSEQEQVGKYYCDRAMAKKFVLNFKPGYAANINDYLPEKLSTRLAEESVSLWLATCIDGVVKPYATGAHAWEMSVVRVRRSWWKKHRDEFALLEGDAFRQWCIEQRQDPEMANVILVTDDESCGYSAMEGLTGKVG
>NZ_AP017610.1|WP_000956458.1|2988820_2988973_-|type-I-toxin-antitoxin-system-Hok-family-toxin
MLTKYALVAIIVLCCTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK
>NZ_AP017610.1|WP_000039853.1|2989236_2989971_-|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG

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Crispr_ID: NZ_AP017610_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP017610_3

3005669-3006185

Unclear

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGACGTGGGGAACTC	CRISPRCasFinder
CGGTTTATCCCCGCTGNCGNGGGGAACTC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	PILER-CR
CGGTTTATCCCCGCTGACGTGGGGAACTC	PILER-CR

8 spacers

The CRISPR arrays of NZ_AP017610_3

>merge|NZ_AP017610|3|3005669-3006185|CRISPRCasFinder,CRT,PILER-CR,PILER-CR
TGGTTTATCCCCGCTGGTGCGGGGAACTCTGCGTGATCCCCTCGCTAACGTACATATCGATCGGTTTATCCCCGCTGGCGCGGGGAACTCGCAAAACCTGTCGATCTTGATACTGGTCGCTCCGGTTTATCCCCGCTGCCGCGGGGAACTCTTGCTGCAATTTTGTCTTTTAATTTATCCTAGCGGTTTATCCCCGCTGGCGCGGGGAACTCCGGACACCGTACACAGATTTATATCAATCATTCGGTTTATCCCCGCTGACGTGGGGAACTCTTCGACCGTCTCGACTTTTGACGAGTGACCAACGGTTTATCCCCGCTGACGTGGGGAACTCTCTTTCGCAGCATCTGGAACTAAATTAATTGCCGGTTTATCCCCGCTGACGTGGGGAACTCACAGCGCAAACCGGAGATCAAACCGGCGGAGCCGGTTTATCCCCGCTGACGTGGGGAACTCGTCGATAATATTTTGCTGTTGTTTTGTTACGTCGGTTTATCCCCGCTGACGTGGGGAACTC

>NZ_AP017610|3|3|3005669-3006185|CRISPRCasFinder
TGGTTTATCCCCGCTGGTGCGGGGAACTC	TGCGTGATCCCCTCGCTAACGTACATATCGAT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCAAAACCTGTCGATCTTGATACTGGTCGCTC
CGGTTTATCCCCGCTGCCGCGGGGAACTC	TTGCTGCAATTTTGTCTTTTAATTTATCCTAG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CGGACACCGTACACAGATTTATATCAATCATT
CGGTTTATCCCCGCTGACGTGGGGAACTC	TTCGACCGTCTCGACTTTTGACGAGTGACCAA
CGGTTTATCCCCGCTGACGTGGGGAACTC	TCTTTCGCAGCATCTGGAACTAAATTAATTGC
CGGTTTATCCCCGCTGACGTGGGGAACTC	ACAGCGCAAACCGGAGATCAAACCGGCGGAGC
CGGTTTATCCCCGCTGACGTGGGGAACTC	GTCGATAATATTTTGCTGTTGTTTTGTTACGT
CGGTTTATCCCCGCTGACGTGGGGAACTC

>NZ_AP017610|3|2|3005669-3006185|CRT
TGGTTTATCCCCGCTGGTGCGGGGAACTC	TGCGTGATCCCCTCGCTAACGTACATATCGAT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCAAAACCTGTCGATCTTGATACTGGTCGCTC
CGGTTTATCCCCGCTGCCGCGGGGAACTC	TTGCTGCAATTTTGTCTTTTAATTTATCCTAG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CGGACACCGTACACAGATTTATATCAATCATT
CGGTTTATCCCCGCTGACGTGGGGAACTC	TTCGACCGTCTCGACTTTTGACGAGTGACCAA
CGGTTTATCCCCGCTGACGTGGGGAACTC	TCTTTCGCAGCATCTGGAACTAAATTAATTGC
CGGTTTATCCCCGCTGACGTGGGGAACTC	ACAGCGCAAACCGGAGATCAAACCGGCGGAGC
CGGTTTATCCCCGCTGACGTGGGGAACTC	GTCGATAATATTTTGCTGTTGTTTTGTTACGT
CGGTTTATCCCCGCTGACGTGGGGAACTC

>NZ_AP017610|3|2|3005670-3005880|PILER-CR
GGTTTATCCCCGCTGGTGCGGGGAACTCT	GCGTGATCCCCTCGCTAACGTACATATCGATC
GGTTTATCCCCGCTGGCGCGGGGAACTCG	CAAAACCTGTCGATCTTGATACTGGTCGCTCC
GGTTTATCCCCGCTGCCGCGGGGAACTCT	TGCTGCAATTTTGTCTTTTAATTTATCCTAGC
GGTTTATCCCCGCTGGCGCGGGGAACTCCGGACACCGTACACAGATTTATATCAATCATTCGGTTTATCCCCGCTGACGTGGGGAACTC	TTCGACCGTCTCGACTTTTGACGAGTGACCAA
CGGTTTATCCCCGCTGACGTGGGGAACTC	TCTTTCGCAGCATCTGGAACTAAATTAATTGC
CGGTTTATCCCCGCTGACGTGGGGAACTC	ACAGCGCAAACCGGAGATCAAACCGGCGGAGC
CGGTTTATCCCCGCTGACGTGGGGAACTC	GTCGATAATATTTTGCTGTTGTTTTGTTACGT


>NZ_AP017610|3|3|3005913-3006185|PILER-CR
	GCGTGATCCCCTCGCTAACGTACATATCGATC
GGTTTATCCCCGCTGGCGCGGGGAACTCG	CAAAACCTGTCGATCTTGATACTGGTCGCTCC
GGTTTATCCCCGCTGCCGCGGGGAACTCT	TGCTGCAATTTTGTCTTTTAATTTATCCTAGC
GGTTTATCCCCGCTGGCGCGGGGAACTCCGGACACCGTACACAGATTTATATCAATCATTCGGTTTATCCCCGCTGACGTGGGGAACTC	TTCGACCGTCTCGACTTTTGACGAGTGACCAA
CGGTTTATCCCCGCTGACGTGGGGAACTC	TCTTTCGCAGCATCTGGAACTAAATTAATTGC
CGGTTTATCCCCGCTGACGTGGGGAACTC	ACAGCGCAAACCGGAGATCAAACCGGCGGAGC
CGGTTTATCCCCGCTGACGTGGGGAACTC	GTCGATAATATTTTGCTGTTGTTTTGTTACGT
CGGTTTATCCCCGCTGACGTGGGGAACTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP017610.1\|WP_000021322.1\|3001144_3001930_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187605
NZ_AP017610.1\|WP_000059315.1\|2999620_3001075_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_AP017610.1\|WP_000211791.1\|3020548_3021889_-\|glucarate-dehydratase	unknown	unknown	gnl\|CDD\|211799
NZ_AP017610.1\|WP_000046790.1\|3014842_3016144_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_AP017610.1\|WP_000036723.1\|3008423_3009722_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_AP017610.1\|WP_000098244.1\|3019187_3020528_-\|glucarate-dehydratase	unknown	unknown	gnl\|CDD\|211799
NZ_AP017610.1\|WP_001318007.1\|2998189_2999599_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_AP017610.1\|WP_000210878.1\|3009808_3011446_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_AP017610.1\|WP_001164575.1\|3002248_3003526_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NZ_AP017610.1\|WP_096488184.1\|3016200_3018957_+\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NZ_AP017610.1\|WP_001199973.1\|3006524_3007196_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_AP017610.1\|WP_000097082.1\|3021890_3023243_-\|galactarate/glucarate/glycerate-transporter-GudP	unknown	unknown	gnl\|CDD\|273326
NZ_AP017610.1\|WP_000226815.1\|3012560_3014795_-\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_AP017610.1\|WP_001071634.1\|3011673_3012465_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_AP017610.1\|WP_001318006.1\|2997432_2998212_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
NZ_AP017610.1\|WP_001318004.1\|2994314_2995586_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182194
NZ_AP017610.1\|WP_000039745.1\|3003552_3005031_+\|sugar-kinase	unknown	unknown	gnl\|CDD\|212662
NZ_AP017610.1\|WP_000109536.1\|2995576_2995837_+\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|225289
NZ_AP017610.1\|WP_001130278.1\|2995853_2996429_+\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|224865
NZ_AP017610.1\|WP_001318005.1\|2996575_2997436_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936

Protein	Function_ID	Function_description	E-value
NZ_AP017610.1\|WP_000021322.1\|3001144_3001930_-\|SDR-family-oxidoreductase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.9939e-139
NZ_AP017610.1\|WP_000059315.1\|2999620_3001075_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	1.16286e-81
NZ_AP017610.1\|WP_000211791.1\|3020548_3021889_-\|glucarate-dehydratase	gnl\|CDD\|211799	TIGR03247, glucar-dehydr, glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (GenProp0716). The E. coli enzyme has been well-characterized.	0
NZ_AP017610.1\|WP_000046790.1\|3014842_3016144_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_AP017610.1\|WP_000036723.1\|3008423_3009722_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_AP017610.1\|WP_000098244.1\|3019187_3020528_-\|glucarate-dehydratase	gnl\|CDD\|211799	TIGR03247, glucar-dehydr, glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (GenProp0716). The E. coli enzyme has been well-characterized.	0
NZ_AP017610.1\|WP_001318007.1\|2998189_2999599_-\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.06432e-52
NZ_AP017610.1\|WP_000210878.1\|3009808_3011446_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_AP017610.1\|WP_001164575.1\|3002248_3003526_+\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	7.00463e-29
NZ_AP017610.1\|WP_096488184.1\|3016200_3018957_+\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NZ_AP017610.1\|WP_001199973.1\|3006524_3007196_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.98248e-155
NZ_AP017610.1\|WP_000097082.1\|3021890_3023243_-\|galactarate/glucarate/glycerate-transporter-GudP	gnl\|CDD\|273326	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	6.41821e-161
NZ_AP017610.1\|WP_000226815.1\|3012560_3014795_-\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_AP017610.1\|WP_001071634.1\|3011673_3012465_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	6.42418e-159
NZ_AP017610.1\|WP_001318006.1\|2997432_2998212_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	7.49488e-64
NZ_AP017610.1\|WP_001318004.1\|2994314_2995586_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|182194	PRK10015, PRK10015, oxidoreductase; Provisional.	2.50386e-125
NZ_AP017610.1\|WP_000039745.1\|3003552_3005031_+\|sugar-kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	2.96639e-109
NZ_AP017610.1\|WP_000109536.1\|2995576_2995837_+\|ferredoxin-family-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	4.39108e-42
NZ_AP017610.1\|WP_001130278.1\|2995853_2996429_+\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	1.96043e-88
NZ_AP017610.1\|WP_001318005.1\|2996575_2997436_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	3.86737e-87

>NZ_AP017610.1|WP_000039745.1|3003552_3005031_+|sugar-kinase
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFASHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKTWAWSEDTAVMEKFNIPRQMLFDVQMPGTVLGHITRQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDAKAQDLSPEDLLNKKASCVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDKMVRVKDIFMPVESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGELGNADSIQSWSNA
>NZ_AP017610.1|WP_001164575.1|3002248_3003526_+|MFS-transporter
MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSASLKTVIIIYSVVYILLGILCWFFVSDNNNLRSTNNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSVLGLLALTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGYWQDTLPAAEAYRNMWLMGMAALAMVIIFTFLLFQKIRTADSAPAMASSK
>NZ_AP017610.1|WP_000021322.1|3001144_3001930_-|SDR-family-oxidoreductase
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGETKEMIEKQGVEVDFMQVDITAEGAPQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASQASNYVNGHLLVVDGGYLVR
>NZ_AP017610.1|WP_000059315.1|2999620_3001075_-|FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYVLEDMKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEGIAEIVARYPQCQRVDSKLIETWFNHLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIYPIEK
>NZ_AP017610.1|WP_001318007.1|2998189_2999599_-|MFS-transporter
MTGRCLFGFSGEKPFLLPDNEGVKMNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFIGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGVLLGAFSVVWTVGYVLASIAGHHFISESPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVATATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTANLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLAAVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>NZ_AP017610.1|WP_001318006.1|2997432_2998212_-|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNILLAFKAEPDAGMLAEKEWQAAAQGNSGPDVSLLRSLLGADEQAAAALLLAQRKNGTSMSLTALSMGDERALHWLRYLMALGFEEAVVLETAADLRFASEFVARHIAEWQRQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDAPFITLEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAELPAMQCLQLARAEQRRGATLIDGQTVAEKAQKLWQNYLRQRMQP
>NZ_AP017610.1|WP_001318005.1|2996575_2997436_-|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNITIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSMRKSHWGNALTATLQTEKRPLCLSLARQAGALKNATLPSGMQQLNIVPGAPPDWLISVENLKNVTRDPLAEARRVLVVGQGGEADNQEIAMLVEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKAVLEALVTTIHADCQ
>NZ_AP017610.1|WP_001130278.1|2995853_2996429_+|glycerol-3-phosphate-responsive-antiterminator
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISQIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>NZ_AP017610.1|WP_000109536.1|2995576_2995837_+|ferredoxin-family-protein
MSVARNLWRVADAPHIVPADSVERQTVQRLINACPAGLFSLTPEGDLRVDYRGCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG
>NZ_AP017610.1|WP_001318004.1|2994314_2995586_+|FAD-dependent-oxidoreductase
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLVERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERRITHESLSLLTPDGATTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGGICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLARFKTHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLLGDALRSCVNTGISVRGMDMALTGTQAAAQTLISACQHREPQNLFALYHHNVERSLLWDVLQRYQHVPALLQRPGWYRAWPALMQDISRDLWDQGDKPVPPLRQLFWRHLRRHGLWHLAGDVIRSLRCL
>NZ_AP017610.1|WP_001199973.1|3006524_3007196_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_AP017610.1|WP_000036723.1|3008423_3009722_-|phosphopyruvate-hydratase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_AP017610.1|WP_000210878.1|3009808_3011446_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>NZ_AP017610.1|WP_001071634.1|3011673_3012465_-|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADGSAGNSREVLARWEQIKTEERAQKAQHSALDDIPSSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQVVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>NZ_AP017610.1|WP_000226815.1|3012560_3014795_-|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>NZ_AP017610.1|WP_000046790.1|3014842_3016144_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKALFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAIRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK
>NZ_AP017610.1|WP_096488184.1|3016200_3018957_+|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSTEYGMSLQNRESIGQLISVLHRRHSDIVRAISVYDENNRLFVTSNFHLDPSSMQLGSNVPFPRQLTVTRDGDIMILRTPIISESYSPDESPSSDAKNSQNMLGYIALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLINEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREPLTMQHERLAKAVSMTDFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHHKQNTLLPVTDESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNLLLRYKPGSGISSRVVTPEVNEIVVNPNATLDWQLALRQAAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGENPEGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELLELLDEMDNVAREASKILG
>NZ_AP017610.1|WP_000098244.1|3019187_3020528_-|glucarate-dehydratase
MSSQFTTPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKTLGEYKNVLTLVRNTFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGNRKATPLPYQSQPDDKCDWYRLRHEEAMTPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAWSLNEAIKIGKYLKGSLAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGLTWGSHSNNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPLEIKGGLVQVPEKPGLGVEIDMDQVMKAHELYQKHGLGARDDAMGMQYLIPGWTFDNKRPCMVR
>NZ_AP017610.1|WP_000211791.1|3020548_3021889_-|glucarate-dehydratase
MTTQSSPVITDMKVIPVAGHDSMLLNIGGAHNAYFTRNIVVLTDNAGHTGIGEAPGGEVIYQTLVKAIPMVLGQEVARLNKVVQQVHKGNQAADFDTFGKGAWTFELRVNAVAALEAALLDLLGQALNVPVCELLGPGKQRDAITVLGYLFYIGDRTKTDLPYLENTSGNHEWYQLRHQKAMNSEAVVRLAEASQDRYGFKDFKLKGGVLPGEQEIDTVRALKKRFPDARITVDPNGAWLLDEAISLCKGLNDVLTYAEDPCGAEQGFSGREVMAEFRRATGLPVATNMIATNWREMGHAVMLNAVDIPLADPHFWTLSGAVRVAQLCDDWGLTWGCHSNNHFDISLAMFTHVGAAAPGNPTAIDTHWIWQEGDCRLTKNPLEIKNGKIAVPDAPGLGVELDWEQVQKAHEAYKRLPGGARNDAGPMQYLIPGWTFDRKRPVFGRH
>NZ_AP017610.1|WP_000097082.1|3021890_3023243_-|galactarate/glucarate/glycerate-transporter-GudP
MSSLSQAASSVEKRTNARYWIVVMLFIVTSFNYGDRATLSIAGSEMAKDIGLDPVGMGYVFSAFSWAYVIGQIPGGWLLDRFGSKRVYFWSIFIWSMFTLLQGFVDIFSGFGIIVALFTLRFLVGLAEAPSFPGNSRIVAAWFPAQERGTAVSIFNSAQYFATVIFAPIMGWLTHEVGWSHVFFFMGGLGIVISFIWLKVIHEPNQHPGVNQKELEYIAAGGALINMDQQNTKVKVPFSVKWGQIKQLLGSRMMIGVYIGQYCINALTYFFITWFPVYLVQARGMSILKAGFVASVPAVCGFIGGVLGGIISDWLMRRTGSLNIARKTPIVMGMLLSMVMVFCNYVNVEWMIIGFMALAFFGKGIGALGWAVMADTAPKEISGLSGGLFNMFGNISGIVTPIAIGYIVGTTGSFNGALIYVGVHALIAVLSYLVLVGDIKRIELKPVAGQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_AP017610_2	2.2\|2978809\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2978809-2978840	32	NZ_CP038506	Escherichia coli strain 28Eco12 plasmid p28Eco12, complete sequence	11835-11866	0	1.0
NZ_AP017610_2	2.2\|2978809\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2978809-2978840	32	NZ_CP019283	Escherichia coli strain 13P484A plasmid p13P484A-3, complete sequence	42147-42178	0	1.0
NZ_AP017610_2	2.2\|2978809\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2978809-2978840	32	CP042641	Escherichia coli strain NCYU-24-74 plasmid pNCYU-24-74-3, complete sequence	36520-36551	0	1.0
NZ_AP017610_2	2.2\|2978809\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2978809-2978840	32	NZ_CP034821	Salmonella sp. SSDFZ54 plasmid pTB502, complete sequence	1557-1588	0	1.0
NZ_AP017610_2	2.2\|2978809\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2978809-2978840	32	NZ_CP027443	Escherichia coli strain 2013C-3252 plasmid unnamed1, complete sequence	9506-9537	0	1.0
NZ_AP017610_2	2.2\|2978809\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2978809-2978840	32	NZ_CP027575	Escherichia coli strain 2013C-4081 plasmid unnamed2	94756-94787	0	1.0
NZ_AP017610_2	2.2\|2978809\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2978809-2978840	32	NZ_CP027223	Escherichia coli strain 2015C-3101 plasmid unnamed2	65534-65565	0	1.0
NZ_AP017610_2	2.2\|2978809\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2978809-2978840	32	NZ_CP030188	Salmonella enterica strain SA20094620 plasmid pSA20094620.3, complete sequence	61916-61947	0	1.0
NZ_AP017610_2	2.2\|2978809\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2978809-2978840	32	NZ_CP027590	Escherichia coli strain 2014C-3011 plasmid unnamed2	64165-64196	0	1.0
NZ_AP017610_2	2.2\|2978809\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2978809-2978840	32	NZ_CP039862	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014880 plasmid p16-6773.2, complete sequence	20286-20317	0	1.0
NZ_AP017610_2	2.2\|2978809\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2978809-2978840	32	NZ_CP033632	Escherichia coli isolate ECCNB12-2 plasmid pTB-nb1, complete sequence	119284-119315	0	1.0
NZ_AP017610_2	2.2\|2978809\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2978809-2978840	32	NZ_AP018798	Escherichia coli strain E2855 plasmid pE2855-2, complete sequence	85099-85130	0	1.0
NZ_AP017610_2	2.2\|2978809\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2978809-2978840	32	CP012494	Escherichia coli strain CFSAN004177 plasmid pCFSAN004177G_03, complete sequence	46688-46719	0	1.0
NZ_AP017610_2	2.2\|2978809\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2978809-2978840	32	CP027320	Escherichia coli strain 2014C-3084 plasmid unnamed1	42116-42147	0	1.0
NZ_AP017610_2	2.2\|2978809\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2978809-2978840	32	NC_013370	Escherichia coli O111:H- str. 11128 plasmid pO111_2, complete sequence	87237-87268	0	1.0
NZ_AP017610_2	2.2\|2978809\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2978809-2978840	32	NZ_CP026475	Escherichia coli strain KBN10P04869 plasmid pKBN10P04869B, complete sequence	81853-81884	0	1.0
NZ_AP017610_2	2.2\|2978809\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2978809-2978840	32	MN510445	Escherichia coli strain JIE250 plasmid pJIE250_3, complete sequence	70500-70531	0	1.0
NZ_AP017610_2	2.2\|2978809\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2978809-2978840	32	MN510447	Escherichia coli strain TZ20_1P plasmid pTZ20_1P, complete sequence	47861-47892	0	1.0
NZ_AP017610_2	2.2\|2978809\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2978809-2978840	32	NZ_CP012491	Escherichia coli strain CFSAN004176 plasmid pCFSAN004176P_03, complete sequence	62997-63028	0	1.0
NZ_AP017610_2	2.2\|2978809\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2978809-2978840	32	MH422554	Escherichia phage P1, complete genome	87194-87225	0	1.0
NZ_AP017610_2	2.2\|2978809\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2978809-2978840	32	NC_050152	Enterobacteria phage P7, complete genome	93995-94026	0	1.0
NZ_AP017610_2	2.2\|2978809\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2978809-2978840	32	MH445380	Escherichia virus P1 isolate transconjugant 2(L-II), complete genome	58645-58676	0	1.0
NZ_AP017610_2	2.2\|2978809\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2978809-2978840	32	NC_031129	Salmonella phage SJ46, complete genome	77363-77394	0	1.0
NZ_AP017610_2	2.2\|2978809\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2978809-2978840	32	MH445381	Escherichia virus P1, complete genome	56870-56901	0	1.0
NZ_AP017610_2	2.1\|2978748\|32\|NZ_AP017610\|CRT	2978748-2978779	32	LC542972	Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence	246937-246968	2	0.938
NZ_AP017610_2	2.2\|2978809\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2978809-2978840	32	NZ_KP453775	Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence	17440-17471	2	0.938
NZ_AP017610_2	2.2\|2978809\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2978809-2978840	32	NZ_CP017632	Escherichia coli strain SLK172 plasmid pSLK172-1, complete sequence	122310-122341	2	0.938
NZ_AP017610_2	2.2\|2978809\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2978809-2978840	32	NZ_CP030285	Escherichia coli strain E308 plasmid pLKSZ04, complete sequence	6029-6060	2	0.938
NZ_AP017610_2	2.2\|2978809\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2978809-2978840	32	NZ_CP036204	Escherichia coli strain L725 plasmid punnamed2, complete sequence	15121-15152	2	0.938
NZ_AP017610_2	2.2\|2978809\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2978809-2978840	32	MN510446	Escherichia coli strain SvETEC plasmid pSvP1_F, complete sequence	131402-131433	2	0.938
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	NZ_CP044141	Escherichia coli O157 strain AR-0430 plasmid pAR-0430-4	20912-20943	4	0.875
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	NZ_CP027575	Escherichia coli strain 2013C-4081 plasmid unnamed2	2888-2919	4	0.875
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	NZ_CP023368	Escherichia coli strain 1428 plasmid p48, complete sequence	16047-16078	4	0.875
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	AP012531	Stx2-converting phage Stx2a_F422 proviral DNA, complete genome	4184-4215	4	0.875
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	LC487997	Stx2-converting phage Stx2a F578 genes for Shiga toxin 2 production region, complete sequence	4171-4202	4	0.875
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	NC_004813	Enterobacteria phage BP-4795, complete genome	2984-3015	4	0.875
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	KP682385	Escherichia phage PA33, complete genome	4184-4215	4	0.875
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	KP682382	Escherichia phage PA29, complete genome	4184-4215	4	0.875
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	KP682389	Escherichia phage PA45, complete genome	4184-4215	4	0.875
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	KP682383	Escherichia phage PA30, complete genome	4184-4215	4	0.875
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	NC_000924	Enterobacteria phage 933W, complete genome	4184-4215	4	0.875
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	NC_049924	Stx2-converting phage Stx2a_F451 proviral DNA, complete genome	7343-7374	4	0.875
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	NC_004914	Stx2 converting phage II DNA, complete genome	36072-36103	4	0.875
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	KP682375	Escherichia phage PA11, complete genome	4184-4215	4	0.875
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	KP682387	Escherichia phage PA42, complete genome	4184-4215	4	0.875
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	AF125520	Bacteriophage 933W, complete genome	4184-4215	4	0.875
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	KJ909655	Escherichia Stx1-converting recombinant phage HUN/2013, complete genome	27408-27439	4	0.875
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	KU238068	Stx converting phage vB_EcoS_P32, complete genome	4184-4215	4	0.875
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	KU238070	Stx converting phage vB_EcoS_ST2-8624, complete genome	4184-4215	4	0.875
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	KP682384	Escherichia phage PA32, complete genome	4184-4215	4	0.875
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	KP682386	Escherichia phage PA36, complete genome	4184-4215	4	0.875
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	KP682376	Escherichia phage PA12, complete genome	4184-4215	4	0.875
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	AP000422	Enterobacteria phage VT2-Sakai genomic DNA, prophage inserted region in Escherichia coli O157:H7	4738-4769	4	0.875
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	KP682391	Escherichia phage PA51, complete genome	4184-4215	4	0.875
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	LC487996	Stx2-converting phage Stx2a 981509 genes for Shiga toxin 2 production region, complete sequence	6655-6686	4	0.875
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	KP682388	Escherichia phage PA44, complete genome	4184-4215	4	0.875
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	AP004402	Stx2 converting phage I DNA, complete genome	35932-35963	4	0.875
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	NC_008464	Stx2-converting phage 86, complete genome	43118-43149	4	0.875
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	KP682372	Escherichia phage PA4, complete genome	4184-4215	4	0.875
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	KP682377	Escherichia phage PA16, complete genome	4184-4215	4	0.875
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	NC_000902	Enterobacteria phage VT2-Sakai, complete genome	4183-4214	4	0.875
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	AP000363	Enterobacteria phage VT2-Sakai proviral DNA, complete genome	4183-4214	4	0.875
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	JQ182728	Enterobacteria phage mEp460, complete genome	27610-27641	4	0.875
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	KP682380	Escherichia phage PA27, complete genome	4184-4215	4	0.875
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	AP005153	Stx1 converting phage DNA, complete genome	36072-36103	4	0.875
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	KF030445	Escherichia phage 1720a-02, complete genome	43933-43964	4	0.875
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	KP682379	Escherichia phage PA21, complete genome	4184-4215	4	0.875
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	KP682373	Escherichia phage PA5, complete genome	4184-4215	4	0.875
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	AB255436	Stx2-converting phage 86 DNA, complete genome	43118-43149	4	0.875
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	KP682378	Escherichia phage PA18, complete genome	4184-4215	4	0.875
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	KU238069	Stx converting phage vB_EcoS_P22, complete genome	4184-4215	4	0.875
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	KP682390	Escherichia phage PA50, complete genome	4184-4215	4	0.875
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	AJ556162	Phage BP-4795 complete genome	2984-3015	4	0.875
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	NC_010237	Enterobacteria phage Min27, complete genome	4184-4215	4	0.875
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	KP682392	Escherichia phage PA52, complete genome	4184-4215	4	0.875
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	NC_049942	Escherichia phage JLK-2012, complete sequence	3791-3822	4	0.875
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	AP012529	Stx2-converting phage Stx2a_F403 proviral DNA, complete genome	4184-4215	4	0.875
NZ_AP017610_2	2.20\|2979907\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979907-2979938	32	NZ_CP022140	Salmonella enterica subsp. salamae serovar 55:k:z39 str. 1315K plasmid unnamed1, complete sequence	27735-27766	6	0.812
NZ_AP017610_2	2.10\|2979297\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979297-2979328	32	NZ_CP015205	Rhodococcus sp. 008 plasmid pR8C2, complete sequence	47221-47252	7	0.781
NZ_AP017610_2	2.10\|2979297\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979297-2979328	32	NZ_CP025960	Rhodococcus qingshengii strain djl-6-2 plasmid pDJL1, complete sequence	25136-25167	7	0.781
NZ_AP017610_1	1.1\|841416\|48\|NZ_AP017610\|CRISPRCasFinder	841416-841463	48	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	12111-12158	8	0.833
NZ_AP017610_1	1.1\|841416\|48\|NZ_AP017610\|CRISPRCasFinder	841416-841463	48	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	424237-424284	8	0.833
NZ_AP017610_2	2.1\|2978748\|32\|NZ_AP017610\|CRT	2978748-2978779	32	MK455769	Aeromonas phage MJG, complete genome	10369-10400	8	0.75
NZ_AP017610_2	2.5\|2978992\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2978992-2979023	32	NC_009717	Xanthobacter autotrophicus Py2 plasmid pXAUT01, complete sequence	288380-288411	8	0.75
NZ_AP017610_2	2.5\|2978992\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2978992-2979023	32	NZ_CP010657	Phaeobacter piscinae strain P71 plasmid pP71_a, complete sequence	57627-57658	8	0.75
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	NZ_KX426227	Acinetobacter lwoffii strain ED23-35 plasmid pALWED1.1, complete sequence	54048-54079	8	0.75
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	CP033569	Acinetobacter pittii strain 2014N21-145 plasmid p2014N21-145-1, complete sequence	260851-260882	8	0.75
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	NZ_CP033130	Acinetobacter wuhouensis strain WCHAW010062 plasmid pOXA23_010062, complete sequence	31060-31091	8	0.75
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	CP033531	Acinetobacter pittii strain 2014S07-126 plasmid p2014S07-126-1, complete sequence	55435-55466	8	0.75
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	NZ_CP042557	Acinetobacter baumannii strain E47 plasmid pE47_001, complete sequence	166438-166469	8	0.75
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	NZ_CP010351	Acinetobacter johnsonii XBB1 plasmid pXBB1-9, complete sequence	184349-184380	8	0.75
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	NZ_CP029396	Acinetobacter defluvii strain WCHA30 plasmid pOXA58_010030, complete sequence	76700-76731	8	0.75
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	NZ_CP048828	Acinetobacter baumannii strain ABF9692 plasmid pABF9692, complete sequence	206203-206234	8	0.75
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	NZ_CP032285	Acinetobacter sp. WCHA55 plasmid pOXA58_010055, complete sequence	199264-199295	8	0.75
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	NZ_CP042365	Acinetobacter pittii strain C54 plasmid pC54_001, complete sequence	97622-97653	8	0.75
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	NZ_MK134375	Acinetobacter baumannii strain 34AB plasmid p34AB, complete sequence	52241-52272	8	0.75
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	NZ_CP038010	Acinetobacter haemolyticus strain TJR01 plasmid pAHTJR1, complete sequence	158490-158521	8	0.75
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	NZ_CP043053	Acinetobacter pittii strain AP43 plasmid pAP43-OXA58-NDM1, complete sequence	87517-87548	8	0.75
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	NZ_MH220285	Acinetobacter ursingii strain RIVM0002 plasmid pRIVM0002_IMP-4_171109_B03, complete sequence	12023-12054	8	0.75
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	NZ_MH220287	Acinetobacter ursingii strain RIVM0061 plasmid pRIVM0061_IMP-4_171109_B01, complete sequence	17499-17530	8	0.75
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	NZ_CP043309	Acinetobacter johnsonii strain Acsw19 plasmid pAcsw19-2, complete sequence	253107-253138	8	0.75
NZ_AP017610_2	2.12\|2979419\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979419-2979450	32	NZ_MH220286	Acinetobacter ursingii strain RIVM0051 plasmid pRIVM0051_IMP-4, complete sequence	12023-12054	8	0.75
NZ_AP017610_2	2.20\|2979907\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979907-2979938	32	NZ_KP453775	Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence	70246-70277	8	0.75
NZ_AP017610_3	3.4\|3005881\|32\|NZ_AP017610\|CRISPRCasFinder,CRT	3005881-3005912	32	NZ_LT904880	Salmonella enterica subsp. enterica serovar Typhi strain ty3-193 genome assembly, plasmid: 3	100861-100892	8	0.75
NZ_AP017610_3	3.4\|3005881\|32\|NZ_AP017610\|CRISPRCasFinder,CRT	3005881-3005912	32	NZ_LT904895	Salmonella enterica subsp. enterica serovar Typhi strain ERL12960 genome assembly, plasmid: 2	32455-32486	8	0.75
NZ_AP017610_3	3.4\|3005881\|32\|NZ_AP017610\|CRISPRCasFinder,CRT	3005881-3005912	32	NZ_CP012254	Cronobacter sakazakii strain NCTC 8155 plasmid pCS1, complete sequence	90639-90670	8	0.75
NZ_AP017610_3	3.4\|3005881\|32\|NZ_AP017610\|CRISPRCasFinder,CRT	3005881-3005912	32	NZ_CP029647	Salmonella enterica subsp. enterica serovar Typhi strain 311189_217186 plasmid pHCM2, complete sequence	24048-24079	8	0.75
NZ_AP017610_3	3.4\|3005881\|32\|NZ_AP017610\|CRISPRCasFinder,CRT	3005881-3005912	32	NZ_LT904853	Salmonella enterica subsp. enterica serovar Typhi strain TY585 genome assembly, plasmid: 2	2158-2189	8	0.75
NZ_AP017610_3	3.4\|3005881\|32\|NZ_AP017610\|CRISPRCasFinder,CRT	3005881-3005912	32	NC_003385	Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM2, complete sequence	69550-69581	8	0.75
NZ_AP017610_3	3.4\|3005881\|32\|NZ_AP017610\|CRISPRCasFinder,CRT	3005881-3005912	32	NZ_CP029859	Salmonella enterica subsp. enterica serovar Typhi strain 343077_285138 plasmid pHCM2, complete sequence	33422-33453	8	0.75
NZ_AP017610_3	3.4\|3005881\|32\|NZ_AP017610\|CRISPRCasFinder,CRT	3005881-3005912	32	NZ_CP029847	Salmonella enterica subsp. enterica serovar Typhi strain 343078_273110 plasmid pHCM2, complete sequence	64890-64921	8	0.75
NZ_AP017610_3	3.4\|3005881\|32\|NZ_AP017610\|CRISPRCasFinder,CRT	3005881-3005912	32	NZ_CP029916	Salmonella enterica subsp. enterica serovar Typhi strain 343076_202113 plasmid pHCM2, complete sequence	3001-3032	8	0.75
NZ_AP017610_3	3.4\|3005881\|32\|NZ_AP017610\|CRISPRCasFinder,CRT	3005881-3005912	32	NZ_CP029893	Salmonella enterica subsp. enterica serovar Typhi strain 343076_252143 plasmid pHCM2, complete sequence	30210-30241	8	0.75
NZ_AP017610_3	3.4\|3005881\|32\|NZ_AP017610\|CRISPRCasFinder,CRT	3005881-3005912	32	NZ_CP029876	Salmonella enterica subsp. enterica serovar Typhi strain 343076_227128 plasmid pHCM2, complete sequence	21803-21834	8	0.75
NZ_AP017610_3	3.4\|3005881\|32\|NZ_AP017610\|CRISPRCasFinder,CRT	3005881-3005912	32	NZ_CP029884	Salmonella enterica subsp. enterica serovar Typhi strain 311189_268186 plasmid pHCM2, complete sequence	5429-5460	8	0.75
NZ_AP017610_3	3.4\|3005881\|32\|NZ_AP017610\|CRISPRCasFinder,CRT	3005881-3005912	32	NZ_CP029961	Salmonella enterica subsp. enterica serovar Typhi strain 343078_251131 plasmid pHCM2, complete sequence	76887-76918	8	0.75
NZ_AP017610_3	3.4\|3005881\|32\|NZ_AP017610\|CRISPRCasFinder,CRT	3005881-3005912	32	NZ_CP029849	Salmonella enterica subsp. enterica serovar Typhi strain 343078_211126 plasmid pHCM2, complete sequence	9632-9663	8	0.75
NZ_AP017610_3	3.4\|3005881\|32\|NZ_AP017610\|CRISPRCasFinder,CRT	3005881-3005912	32	NZ_CP029857	Salmonella enterica subsp. enterica serovar Typhi strain 343077_286126 plasmid pHCM2, complete sequence	17697-17728	8	0.75
NZ_AP017610_3	3.4\|3005881\|32\|NZ_AP017610\|CRISPRCasFinder,CRT	3005881-3005912	32	NZ_CP029929	Salmonella enterica subsp. enterica serovar Typhi strain 311189_216103 plasmid pHCM2, complete sequence	73527-73558	8	0.75
NZ_AP017610_3	3.4\|3005881\|32\|NZ_AP017610\|CRISPRCasFinder,CRT	3005881-3005912	32	NZ_CP029865	Salmonella enterica subsp. enterica serovar Typhi strain 343077_228157 plasmid pHCM2, complete sequence	87633-87664	8	0.75
NZ_AP017610_3	3.4\|3005881\|32\|NZ_AP017610\|CRISPRCasFinder,CRT	3005881-3005912	32	NZ_LT883154	Salmonella enterica subsp. enterica serovar Typhi strain ERL12148 genome assembly, plasmid: 2	32810-32841	8	0.75
NZ_AP017610_3	3.4\|3005881\|32\|NZ_AP017610\|CRISPRCasFinder,CRT	3005881-3005912	32	NZ_CP029905	Salmonella enterica subsp. enterica serovar Typhi strain 311189_231186 plasmid pHCM2, complete sequence	30728-30759	8	0.75
NZ_AP017610_3	3.4\|3005881\|32\|NZ_AP017610\|CRISPRCasFinder,CRT	3005881-3005912	32	NZ_CP029851	Salmonella enterica subsp. enterica serovar Typhi strain 343078_203125 plasmid pHCM2, complete sequence	44207-44238	8	0.75
NZ_AP017610_3	3.4\|3005881\|32\|NZ_AP017610\|CRISPRCasFinder,CRT	3005881-3005912	32	NZ_CP040567	Salmonella enterica subsp. enterica serovar Typhimurium strain SAP17-7299 plasmid pCFSAN059543, complete sequence	17468-17499	8	0.75
NZ_AP017610_3	3.4\|3005881\|32\|NZ_AP017610\|CRISPRCasFinder,CRT	3005881-3005912	32	NZ_CP029889	Salmonella enterica subsp. enterica serovar Typhi strain 343076_294172 plasmid pHCM2, complete sequence	17968-17999	8	0.75
NZ_AP017610_3	3.4\|3005881\|32\|NZ_AP017610\|CRISPRCasFinder,CRT	3005881-3005912	32	NZ_CP029891	Salmonella enterica subsp. enterica serovar Typhi strain 343076_253155 plasmid pHCM2, complete sequence	18575-18606	8	0.75
NZ_AP017610_3	3.4\|3005881\|32\|NZ_AP017610\|CRISPRCasFinder,CRT	3005881-3005912	32	NZ_CP029898	Salmonella enterica subsp. enterica serovar Typhi strain 343077_213147 plasmid pHCM2, complete sequence	21136-21167	8	0.75
NZ_AP017610_3	3.4\|3005881\|32\|NZ_AP017610\|CRISPRCasFinder,CRT	3005881-3005912	32	NZ_CP029951	Salmonella enterica subsp. enterica serovar Typhi strain 311189_205186 plasmid pHCM2, complete sequence	47286-47317	8	0.75
NZ_AP017610_3	3.4\|3005881\|32\|NZ_AP017610\|CRISPRCasFinder,CRT	3005881-3005912	32	NZ_CP029867	Salmonella enterica subsp. enterica serovar Typhi strain 343077_228140 plasmid pHCM2, complete sequence	33258-33289	8	0.75
NZ_AP017610_3	3.4\|3005881\|32\|NZ_AP017610\|CRISPRCasFinder,CRT	3005881-3005912	32	NZ_CP029901	Salmonella enterica subsp. enterica serovar Typhi strain 343076_232188 plasmid pHCM2, complete sequence	32901-32932	8	0.75
NZ_AP017610_3	3.4\|3005881\|32\|NZ_AP017610\|CRISPRCasFinder,CRT	3005881-3005912	32	NZ_CP029921	Salmonella enterica subsp. enterica serovar Typhi strain 311189_282186 plasmid pHCM2, complete sequence	100446-100477	8	0.75
NZ_AP017610_3	3.8\|3006125\|32\|NZ_AP017610\|CRISPRCasFinder,CRT,PILER-CR	3006125-3006156	32	MK448716	Streptococcus phage Javan249, complete genome	37558-37589	8	0.75
NZ_AP017610_2	2.1\|2978748\|32\|NZ_AP017610\|CRT	2978748-2978779	32	NC_047954	Pseudomonas phage Njord, complete genome	11435-11466	9	0.719
NZ_AP017610_2	2.5\|2978992\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2978992-2979023	32	NZ_CP014942	Rhodococcus sp. BH4 plasmid, complete sequence	418665-418696	9	0.719
NZ_AP017610_2	2.20\|2979907\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979907-2979938	32	NZ_CP011404	Lactobacillus salivarius str. Ren plasmid pR1, complete sequence	100759-100790	9	0.719
NZ_AP017610_2	2.20\|2979907\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979907-2979938	32	NZ_CP020859	Lactobacillus salivarius strain ZLS006 plasmid unnamed1, complete sequence	48192-48223	9	0.719
NZ_AP017610_2	2.20\|2979907\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979907-2979938	32	NZ_CP020859	Lactobacillus salivarius strain ZLS006 plasmid unnamed1, complete sequence	248214-248245	9	0.719
NZ_AP017610_2	2.20\|2979907\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979907-2979938	32	NZ_CP017108	Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence	140326-140357	9	0.719
NZ_AP017610_2	2.20\|2979907\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979907-2979938	32	NZ_CP017110	Lactobacillus salivarius strain CICC23174 plasmid pLS_3, complete sequence	20889-20920	9	0.719
NZ_AP017610_2	2.20\|2979907\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979907-2979938	32	NZ_CP029460	Clostridium novyi strain 150557 plasmid pCN2, complete sequence	45232-45263	9	0.719
NZ_AP017610_3	3.2\|3005759\|32\|NZ_AP017610\|CRISPRCasFinder,CRT	3005759-3005790	32	NZ_CP021994	Cryobacterium sp. LW097 plasmid unnamed1	33387-33418	9	0.719
NZ_AP017610_3	3.3\|3005820\|32\|NZ_AP017610\|CRISPRCasFinder,CRT	3005820-3005851	32	AP014399	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C110A-MedDCM-OCT-S26-C20, * SEQUENCING IN PROGRESS *, 2 ordered pieces	35411-35442	9	0.719
NZ_AP017610_3	3.3\|3005820\|32\|NZ_AP017610\|CRISPRCasFinder,CRT	3005820-3005851	32	AP013383	Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C110A-MedDCM-OCT-S24-C13	29583-29614	9	0.719
NZ_AP017610_3	3.8\|3006125\|32\|NZ_AP017610\|CRISPRCasFinder,CRT,PILER-CR	3006125-3006156	32	NZ_CP044347	Escherichia coli strain P225M plasmid pP225M-CTX-M-55, complete sequence	121862-121893	9	0.719
NZ_AP017610_3	3.8\|3006125\|32\|NZ_AP017610\|CRISPRCasFinder,CRT,PILER-CR	3006125-3006156	32	NZ_CP032533	Bacillus megaterium NCT-2 plasmid pNCT2_5, complete sequence	17401-17432	9	0.719
NZ_AP017610_3	3.10\|3005760\|32\|NZ_AP017610\|PILER-CR	3005760-3005791	32	NZ_CP021994	Cryobacterium sp. LW097 plasmid unnamed1	33387-33418	9	0.719
NZ_AP017610_3	3.11\|3005821\|32\|NZ_AP017610\|PILER-CR	3005821-3005852	32	AP014399	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C110A-MedDCM-OCT-S26-C20, * SEQUENCING IN PROGRESS *, 2 ordered pieces	35411-35442	9	0.719
NZ_AP017610_3	3.11\|3005821\|32\|NZ_AP017610\|PILER-CR	3005821-3005852	32	AP013383	Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C110A-MedDCM-OCT-S24-C13	29583-29614	9	0.719
NZ_AP017610_1	1.1\|841416\|48\|NZ_AP017610\|CRISPRCasFinder	841416-841463	48	NZ_CP044147	Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2	7391-7438	10	0.792
NZ_AP017610_1	1.1\|841416\|48\|NZ_AP017610\|CRISPRCasFinder	841416-841463	48	CP044351	Escherichia coli strain 194195 plasmid p194195_1, complete sequence	84215-84262	10	0.792
NZ_AP017610_1	1.1\|841416\|48\|NZ_AP017610\|CRISPRCasFinder	841416-841463	48	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	87125-87172	10	0.792
NZ_AP017610_2	2.1\|2978748\|32\|NZ_AP017610\|CRT	2978748-2978779	32	NC_047894	Pseudomonas phage uligo, complete genome	11353-11384	10	0.688
NZ_AP017610_2	2.5\|2978992\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2978992-2979023	32	NZ_CP048816	Caulobacter rhizosphaerae strain KCTC 52515 plasmid unnamed	34863-34894	10	0.688
NZ_AP017610_2	2.9\|2979236\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979236-2979267	32	NZ_CP031468	Paraburkholderia caffeinilytica strain CF1 plasmid p1, complete sequence	166221-166252	10	0.688
NZ_AP017610_2	2.9\|2979236\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979236-2979267	32	NZ_CP014580	Burkholderia sp. OLGA172 plasmid pOLGA1, complete sequence	2849-2880	10	0.688
NZ_AP017610_2	2.20\|2979907\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979907-2979938	32	NC_018511	Bacillus thuringiensis HD-789 plasmid pBTHD789-5, complete sequence	60-91	10	0.688
NZ_AP017610_2	2.20\|2979907\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979907-2979938	32	NC_001446	Bacillus thuringiensis sv israelensis HI4 plasmid pTX14-3, complete sequence	4548-4579	10	0.688
NZ_AP017610_2	2.20\|2979907\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979907-2979938	32	NZ_CP009345	Bacillus thuringiensis HD1002 plasmid 6, complete sequence	1165-1196	10	0.688
NZ_AP017610_2	2.20\|2979907\|32\|NZ_AP017610\|CRT,PILER-CR,CRISPRCasFinder	2979907-2979938	32	NZ_CP053657	Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence	105460-105491	10	0.688
NZ_AP017610_3	3.1\|3005698\|32\|NZ_AP017610\|CRISPRCasFinder,CRT	3005698-3005729	32	NZ_CP024940	Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence	1163456-1163487	10	0.688
NZ_AP017610_3	3.8\|3006125\|32\|NZ_AP017610\|CRISPRCasFinder,CRT,PILER-CR	3006125-3006156	32	NZ_CP045561	Acinetobacter nosocomialis strain AC1530 plasmid pAC1530, complete sequence	141094-141125	10	0.688
NZ_AP017610_3	3.8\|3006125\|32\|NZ_AP017610\|CRISPRCasFinder,CRT,PILER-CR	3006125-3006156	32	NZ_CP014478	Acinetobacter pittii strain AP_882 plasmid pNDM-AP_882, complete sequence	140150-140181	10	0.688
NZ_AP017610_3	3.9\|3005699\|32\|NZ_AP017610\|PILER-CR	3005699-3005730	32	NZ_CP024940	Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence	1163456-1163487	10	0.688
NZ_AP017610_1	1.1\|841416\|48\|NZ_AP017610\|CRISPRCasFinder	841416-841463	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229237-229284	11	0.771
NZ_AP017610_1	1.1\|841416\|48\|NZ_AP017610\|CRISPRCasFinder	841416-841463	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229338-229385	11	0.771
NZ_AP017610_1	1.1\|841416\|48\|NZ_AP017610\|CRISPRCasFinder	841416-841463	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229439-229486	11	0.771
NZ_AP017610_1	1.1\|841416\|48\|NZ_AP017610\|CRISPRCasFinder	841416-841463	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239731-239778	11	0.771
NZ_AP017610_1	1.1\|841416\|48\|NZ_AP017610\|CRISPRCasFinder	841416-841463	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239832-239879	11	0.771
NZ_AP017610_1	1.1\|841416\|48\|NZ_AP017610\|CRISPRCasFinder	841416-841463	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239933-239980	11	0.771
NZ_AP017610_1	1.1\|841416\|48\|NZ_AP017610\|CRISPRCasFinder	841416-841463	48	NZ_CP044307	Escherichia coli strain C27A plasmid pC27A-2, complete sequence	15006-15053	11	0.771
NZ_AP017610_1	1.1\|841416\|48\|NZ_AP017610\|CRISPRCasFinder	841416-841463	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230643-230690	11	0.771
NZ_AP017610_1	1.1\|841416\|48\|NZ_AP017610\|CRISPRCasFinder	841416-841463	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230744-230791	11	0.771
NZ_AP017610_1	1.1\|841416\|48\|NZ_AP017610\|CRISPRCasFinder	841416-841463	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230845-230892	11	0.771
NZ_AP017610_1	1.1\|841416\|48\|NZ_AP017610\|CRISPRCasFinder	841416-841463	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211613-211660	11	0.771
NZ_AP017610_1	1.1\|841416\|48\|NZ_AP017610\|CRISPRCasFinder	841416-841463	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211714-211761	11	0.771
NZ_AP017610_1	1.1\|841416\|48\|NZ_AP017610\|CRISPRCasFinder	841416-841463	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211815-211862	11	0.771
NZ_AP017610_1	1.1\|841416\|48\|NZ_AP017610\|CRISPRCasFinder	841416-841463	48	NZ_AP023207	Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence	31250-31297	11	0.771
NZ_AP017610_1	1.1\|841416\|48\|NZ_AP017610\|CRISPRCasFinder	841416-841463	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	3371-3418	12	0.75
NZ_AP017610_1	1.1\|841416\|48\|NZ_AP017610\|CRISPRCasFinder	841416-841463	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4012-4059	12	0.75
NZ_AP017610_1	1.1\|841416\|48\|NZ_AP017610\|CRISPRCasFinder	841416-841463	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4113-4160	12	0.75
NZ_AP017610_1	1.1\|841416\|48\|NZ_AP017610\|CRISPRCasFinder	841416-841463	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	208980-209027	12	0.75
NZ_AP017610_1	1.1\|841416\|48\|NZ_AP017610\|CRISPRCasFinder	841416-841463	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	3370-3417	12	0.75
NZ_AP017610_1	1.1\|841416\|48\|NZ_AP017610\|CRISPRCasFinder	841416-841463	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4011-4058	12	0.75
NZ_AP017610_1	1.1\|841416\|48\|NZ_AP017610\|CRISPRCasFinder	841416-841463	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4112-4159	12	0.75
NZ_AP017610_1	1.1\|841416\|48\|NZ_AP017610\|CRISPRCasFinder	841416-841463	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	219474-219521	12	0.75
NZ_AP017610_1	1.1\|841416\|48\|NZ_AP017610\|CRISPRCasFinder	841416-841463	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	3370-3417	12	0.75
NZ_AP017610_1	1.1\|841416\|48\|NZ_AP017610\|CRISPRCasFinder	841416-841463	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4011-4058	12	0.75
NZ_AP017610_1	1.1\|841416\|48\|NZ_AP017610\|CRISPRCasFinder	841416-841463	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4112-4159	12	0.75
NZ_AP017610_1	1.1\|841416\|48\|NZ_AP017610\|CRISPRCasFinder	841416-841463	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	210308-210355	12	0.75
NZ_AP017610_1	1.1\|841416\|48\|NZ_AP017610\|CRISPRCasFinder	841416-841463	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	3370-3417	12	0.75
NZ_AP017610_1	1.1\|841416\|48\|NZ_AP017610\|CRISPRCasFinder	841416-841463	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4011-4058	12	0.75
NZ_AP017610_1	1.1\|841416\|48\|NZ_AP017610\|CRISPRCasFinder	841416-841463	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4112-4159	12	0.75
NZ_AP017610_1	1.1\|841416\|48\|NZ_AP017610\|CRISPRCasFinder	841416-841463	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	191263-191310	12	0.75
NZ_AP017610_1	1.1\|841416\|48\|NZ_AP017610\|CRISPRCasFinder	841416-841463	48	MT230402	Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence	270-317	12	0.75
NZ_AP017610_1	1.1\|841416\|48\|NZ_AP017610\|CRISPRCasFinder	841416-841463	48	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	101195-101242	12	0.75
NZ_AP017610_1	1.1\|841416\|48\|NZ_AP017610\|CRISPRCasFinder	841416-841463	48	MT230312	Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence	158-205	13	0.729

1. spacer 2.2|2978809|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP038506 (Escherichia coli strain 28Eco12 plasmid p28Eco12, complete sequence) position: , mismatch: 0, identity: 1.0

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

2. spacer 2.2|2978809|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP019283 (Escherichia coli strain 13P484A plasmid p13P484A-3, complete sequence) position: , mismatch: 0, identity: 1.0

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

3. spacer 2.2|2978809|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to CP042641 (Escherichia coli strain NCYU-24-74 plasmid pNCYU-24-74-3, complete sequence) position: , mismatch: 0, identity: 1.0

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

4. spacer 2.2|2978809|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP034821 (Salmonella sp. SSDFZ54 plasmid pTB502, complete sequence) position: , mismatch: 0, identity: 1.0

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

5. spacer 2.2|2978809|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP027443 (Escherichia coli strain 2013C-3252 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

6. spacer 2.2|2978809|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP027575 (Escherichia coli strain 2013C-4081 plasmid unnamed2) position: , mismatch: 0, identity: 1.0

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

7. spacer 2.2|2978809|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP027223 (Escherichia coli strain 2015C-3101 plasmid unnamed2) position: , mismatch: 0, identity: 1.0

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

8. spacer 2.2|2978809|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP030188 (Salmonella enterica strain SA20094620 plasmid pSA20094620.3, complete sequence) position: , mismatch: 0, identity: 1.0

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

9. spacer 2.2|2978809|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP027590 (Escherichia coli strain 2014C-3011 plasmid unnamed2) position: , mismatch: 0, identity: 1.0

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

10. spacer 2.2|2978809|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039862 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014880 plasmid p16-6773.2, complete sequence) position: , mismatch: 0, identity: 1.0

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

11. spacer 2.2|2978809|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP033632 (Escherichia coli isolate ECCNB12-2 plasmid pTB-nb1, complete sequence) position: , mismatch: 0, identity: 1.0

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

12. spacer 2.2|2978809|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NZ_AP018798 (Escherichia coli strain E2855 plasmid pE2855-2, complete sequence) position: , mismatch: 0, identity: 1.0

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

13. spacer 2.2|2978809|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to CP012494 (Escherichia coli strain CFSAN004177 plasmid pCFSAN004177G_03, complete sequence) position: , mismatch: 0, identity: 1.0

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

14. spacer 2.2|2978809|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to CP027320 (Escherichia coli strain 2014C-3084 plasmid unnamed1) position: , mismatch: 0, identity: 1.0

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

15. spacer 2.2|2978809|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NC_013370 (Escherichia coli O111:H- str. 11128 plasmid pO111_2, complete sequence) position: , mismatch: 0, identity: 1.0

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

16. spacer 2.2|2978809|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP026475 (Escherichia coli strain KBN10P04869 plasmid pKBN10P04869B, complete sequence) position: , mismatch: 0, identity: 1.0

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

17. spacer 2.2|2978809|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to MN510445 (Escherichia coli strain JIE250 plasmid pJIE250_3, complete sequence) position: , mismatch: 0, identity: 1.0

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

18. spacer 2.2|2978809|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to MN510447 (Escherichia coli strain TZ20_1P plasmid pTZ20_1P, complete sequence) position: , mismatch: 0, identity: 1.0

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

19. spacer 2.2|2978809|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP012491 (Escherichia coli strain CFSAN004176 plasmid pCFSAN004176P_03, complete sequence) position: , mismatch: 0, identity: 1.0

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

20. spacer 2.2|2978809|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to MH422554 (Escherichia phage P1, complete genome) position: , mismatch: 0, identity: 1.0

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

21. spacer 2.2|2978809|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NC_050152 (Enterobacteria phage P7, complete genome) position: , mismatch: 0, identity: 1.0

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

22. spacer 2.2|2978809|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to MH445380 (Escherichia virus P1 isolate transconjugant 2(L-II), complete genome) position: , mismatch: 0, identity: 1.0

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

23. spacer 2.2|2978809|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NC_031129 (Salmonella phage SJ46, complete genome) position: , mismatch: 0, identity: 1.0

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

24. spacer 2.2|2978809|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to MH445381 (Escherichia virus P1, complete genome) position: , mismatch: 0, identity: 1.0

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

25. spacer 2.1|2978748|32|NZ_AP017610|CRT matches to LC542972 (Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence) position: , mismatch: 2, identity: 0.938

taagtgatatccatcatcgcatccagtgcgtc	CRISPR spacer
caagtgatgtccatcatcgcatccagtgcgtc	Protospacer
.*******.***********************

26. spacer 2.2|2978809|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NZ_KP453775 (Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence) position: , mismatch: 2, identity: 0.938

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaacgtgttttcacc	Protospacer
******************* ********.***

27. spacer 2.2|2978809|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP017632 (Escherichia coli strain SLK172 plasmid pSLK172-1, complete sequence) position: , mismatch: 2, identity: 0.938

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaacgtgttttcacc	Protospacer
******************* ********.***

28. spacer 2.2|2978809|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP030285 (Escherichia coli strain E308 plasmid pLKSZ04, complete sequence) position: , mismatch: 2, identity: 0.938

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgacggtttagaccgtgtttttacc	Protospacer
********* *****.****************

29. spacer 2.2|2978809|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP036204 (Escherichia coli strain L725 plasmid punnamed2, complete sequence) position: , mismatch: 2, identity: 0.938

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgacggtttagaccgtgtttttacc	Protospacer
********* *****.****************

30. spacer 2.2|2978809|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to MN510446 (Escherichia coli strain SvETEC plasmid pSvP1_F, complete sequence) position: , mismatch: 2, identity: 0.938

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcataacgtgtttttacc	Protospacer
***************** * ************

31. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP044141 (Escherichia coli O157 strain AR-0430 plasmid pAR-0430-4) position: , mismatch: 4, identity: 0.875

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttaatcgcaaatatgcaccgattgacgaaaag	Protospacer
*..************* ********.******

32. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP027575 (Escherichia coli strain 2013C-4081 plasmid unnamed2) position: , mismatch: 4, identity: 0.875

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttaatcgcaaatatgcaccgattgacgaaaag	Protospacer
*..************* ********.******

33. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP023368 (Escherichia coli strain 1428 plasmid p48, complete sequence) position: , mismatch: 4, identity: 0.875

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttaatcgcaaatatgcaccgattgacgaaaag	Protospacer
*..************* ********.******

34. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to AP012531 (Stx2-converting phage Stx2a_F422 proviral DNA, complete genome) position: , mismatch: 4, identity: 0.875

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttaatcgcaaatatgcaccgattgacgaaaag	Protospacer
*..************* ********.******

35. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to LC487997 (Stx2-converting phage Stx2a F578 genes for Shiga toxin 2 production region, complete sequence) position: , mismatch: 4, identity: 0.875

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttaatcgcaaatatgcaccgattgacgaaaag	Protospacer
*..************* ********.******

36. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NC_004813 (Enterobacteria phage BP-4795, complete genome) position: , mismatch: 4, identity: 0.875

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttaatcgcaaatatgcaccgattgacgaaaag	Protospacer
*..************* ********.******

37. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to KP682385 (Escherichia phage PA33, complete genome) position: , mismatch: 4, identity: 0.875

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttaatcgcaaatatgcaccgattgacgaaaag	Protospacer
*..************* ********.******

38. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to KP682382 (Escherichia phage PA29, complete genome) position: , mismatch: 4, identity: 0.875

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttaatcgcaaatatgcaccgattgacgaaaag	Protospacer
*..************* ********.******

39. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to KP682389 (Escherichia phage PA45, complete genome) position: , mismatch: 4, identity: 0.875

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttaatcgcaaatatgcaccgattgacgaaaag	Protospacer
*..************* ********.******

40. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to KP682383 (Escherichia phage PA30, complete genome) position: , mismatch: 4, identity: 0.875

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttaatcgcaaatatgcaccgattgacgaaaag	Protospacer
*..************* ********.******

41. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NC_000924 (Enterobacteria phage 933W, complete genome) position: , mismatch: 4, identity: 0.875

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttaatcgcaaatatgcaccgattgacgaaaag	Protospacer
*..************* ********.******

42. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NC_049924 (Stx2-converting phage Stx2a_F451 proviral DNA, complete genome) position: , mismatch: 4, identity: 0.875

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttaatcgcaaatatgcaccgattgacgaaaag	Protospacer
*..************* ********.******

43. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NC_004914 (Stx2 converting phage II DNA, complete genome) position: , mismatch: 4, identity: 0.875

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttaatcgcaaatatgcaccgattgacgaaaag	Protospacer
*..************* ********.******

44. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to KP682375 (Escherichia phage PA11, complete genome) position: , mismatch: 4, identity: 0.875

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttaatcgcaaatatgcaccgattgacgaaaag	Protospacer
*..************* ********.******

45. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to KP682387 (Escherichia phage PA42, complete genome) position: , mismatch: 4, identity: 0.875

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttaatcgcaaatatgcaccgattgacgaaaag	Protospacer
*..************* ********.******

46. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to AF125520 (Bacteriophage 933W, complete genome) position: , mismatch: 4, identity: 0.875

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttaatcgcaaatatgcaccgattgacgaaaag	Protospacer
*..************* ********.******

47. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to KJ909655 (Escherichia Stx1-converting recombinant phage HUN/2013, complete genome) position: , mismatch: 4, identity: 0.875

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttaatcgcaaatatgcaccgattgacgaaaag	Protospacer
*..************* ********.******

48. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to KU238068 (Stx converting phage vB_EcoS_P32, complete genome) position: , mismatch: 4, identity: 0.875

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttaatcgcaaatatgcaccgattgacgaaaag	Protospacer
*..************* ********.******

49. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to KU238070 (Stx converting phage vB_EcoS_ST2-8624, complete genome) position: , mismatch: 4, identity: 0.875

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttaatcgcaaatatgcaccgattgacgaaaag	Protospacer
*..************* ********.******

50. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to KP682384 (Escherichia phage PA32, complete genome) position: , mismatch: 4, identity: 0.875

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttaatcgcaaatatgcaccgattgacgaaaag	Protospacer
*..************* ********.******

51. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to KP682386 (Escherichia phage PA36, complete genome) position: , mismatch: 4, identity: 0.875

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttaatcgcaaatatgcaccgattgacgaaaag	Protospacer
*..************* ********.******

52. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to KP682376 (Escherichia phage PA12, complete genome) position: , mismatch: 4, identity: 0.875

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttaatcgcaaatatgcaccgattgacgaaaag	Protospacer
*..************* ********.******

53. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to AP000422 (Enterobacteria phage VT2-Sakai genomic DNA, prophage inserted region in Escherichia coli O157:H7) position: , mismatch: 4, identity: 0.875

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttaatcgcaaatatgcaccgattgacgaaaag	Protospacer
*..************* ********.******

54. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to KP682391 (Escherichia phage PA51, complete genome) position: , mismatch: 4, identity: 0.875

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttaatcgcaaatatgcaccgattgacgaaaag	Protospacer
*..************* ********.******

55. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to LC487996 (Stx2-converting phage Stx2a 981509 genes for Shiga toxin 2 production region, complete sequence) position: , mismatch: 4, identity: 0.875

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttaatcgcaaatatgcaccgattgacgaaaag	Protospacer
*..************* ********.******

56. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to KP682388 (Escherichia phage PA44, complete genome) position: , mismatch: 4, identity: 0.875

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttaatcgcaaatatgcaccgattgacgaaaag	Protospacer
*..************* ********.******

57. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to AP004402 (Stx2 converting phage I DNA, complete genome) position: , mismatch: 4, identity: 0.875

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttaatcgcaaatatgcaccgattgacgaaaag	Protospacer
*..************* ********.******

58. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NC_008464 (Stx2-converting phage 86, complete genome) position: , mismatch: 4, identity: 0.875

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttaatcgcaaatatgcaccgattgacgaaaag	Protospacer
*..************* ********.******

59. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to KP682372 (Escherichia phage PA4, complete genome) position: , mismatch: 4, identity: 0.875

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttaatcgcaaatatgcaccgattgacgaaaag	Protospacer
*..************* ********.******

60. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to KP682377 (Escherichia phage PA16, complete genome) position: , mismatch: 4, identity: 0.875

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttaatcgcaaatatgcaccgattgacgaaaag	Protospacer
*..************* ********.******

61. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NC_000902 (Enterobacteria phage VT2-Sakai, complete genome) position: , mismatch: 4, identity: 0.875

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttaatcgcaaatatgcaccgattgacgaaaag	Protospacer
*..************* ********.******

62. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to AP000363 (Enterobacteria phage VT2-Sakai proviral DNA, complete genome) position: , mismatch: 4, identity: 0.875

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttaatcgcaaatatgcaccgattgacgaaaag	Protospacer
*..************* ********.******

63. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to JQ182728 (Enterobacteria phage mEp460, complete genome) position: , mismatch: 4, identity: 0.875

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttaatcgcaaatatgcaccgattgacgaaaag	Protospacer
*..************* ********.******

64. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to KP682380 (Escherichia phage PA27, complete genome) position: , mismatch: 4, identity: 0.875

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttaatcgcaaatatgcaccgattgacgaaaag	Protospacer
*..************* ********.******

65. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to AP005153 (Stx1 converting phage DNA, complete genome) position: , mismatch: 4, identity: 0.875

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttaatcgcaaatatgcaccgattgacgaaaag	Protospacer
*..************* ********.******

66. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to KF030445 (Escherichia phage 1720a-02, complete genome) position: , mismatch: 4, identity: 0.875

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttaatcgcaaatatgcaccgattgacgaaaag	Protospacer
*..************* ********.******

67. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to KP682379 (Escherichia phage PA21, complete genome) position: , mismatch: 4, identity: 0.875

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttaatcgcaaatatgcaccgattgacgaaaag	Protospacer
*..************* ********.******

68. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to KP682373 (Escherichia phage PA5, complete genome) position: , mismatch: 4, identity: 0.875

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttaatcgcaaatatgcaccgattgacgaaaag	Protospacer
*..************* ********.******

69. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to AB255436 (Stx2-converting phage 86 DNA, complete genome) position: , mismatch: 4, identity: 0.875

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttaatcgcaaatatgcaccgattgacgaaaag	Protospacer
*..************* ********.******

70. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to KP682378 (Escherichia phage PA18, complete genome) position: , mismatch: 4, identity: 0.875

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttaatcgcaaatatgcaccgattgacgaaaag	Protospacer
*..************* ********.******

71. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to KU238069 (Stx converting phage vB_EcoS_P22, complete genome) position: , mismatch: 4, identity: 0.875

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttaatcgcaaatatgcaccgattgacgaaaag	Protospacer
*..************* ********.******

72. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to KP682390 (Escherichia phage PA50, complete genome) position: , mismatch: 4, identity: 0.875

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttaatcgcaaatatgcaccgattgacgaaaag	Protospacer
*..************* ********.******

73. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to AJ556162 (Phage BP-4795 complete genome) position: , mismatch: 4, identity: 0.875

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttaatcgcaaatatgcaccgattgacgaaaag	Protospacer
*..************* ********.******

74. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NC_010237 (Enterobacteria phage Min27, complete genome) position: , mismatch: 4, identity: 0.875

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttaatcgcaaatatgcaccgattgacgaaaag	Protospacer
*..************* ********.******

75. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to KP682392 (Escherichia phage PA52, complete genome) position: , mismatch: 4, identity: 0.875

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttaatcgcaaatatgcaccgattgacgaaaag	Protospacer
*..************* ********.******

76. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NC_049942 (Escherichia phage JLK-2012, complete sequence) position: , mismatch: 4, identity: 0.875

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttaatcgcaaatatgcaccgattgacgaaaag	Protospacer
*..************* ********.******

77. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to AP012529 (Stx2-converting phage Stx2a_F403 proviral DNA, complete genome) position: , mismatch: 4, identity: 0.875

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttaatcgcaaatatgcaccgattgacgaaaag	Protospacer
*..************* ********.******

78. spacer 2.20|2979907|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP022140 (Salmonella enterica subsp. salamae serovar 55:k:z39 str. 1315K plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

caaaaaataaaataaaggcaatgt-tttcaatg	CRISPR spacer
gaaaaaataaaatagagggaatgtgatttaat-	Protospacer
 *************.*** *****  **.***

79. spacer 2.10|2979297|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP015205 (Rhodococcus sp. 008 plasmid pR8C2, complete sequence) position: , mismatch: 7, identity: 0.781

gcggaaacagcttcctggatgctgcgttattg	CRISPR spacer
gtggaaacagcttcttcgatgctgcgctcgcg	Protospacer
*.************.* *********.*  .*

80. spacer 2.10|2979297|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP025960 (Rhodococcus qingshengii strain djl-6-2 plasmid pDJL1, complete sequence) position: , mismatch: 7, identity: 0.781

gcggaaacagcttcctggatgctgcgttattg	CRISPR spacer
gtggaaacagcttcttcgatgctgcgctcgcg	Protospacer
*.************.* *********.*  .*

81. spacer 1.1|841416|48|NZ_AP017610|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 8, identity: 0.833

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
gactcgtaggcctgataagacgcgccagcgtcgcatcaggcaccgaac	Protospacer
.* .********************* ****************   *.*

82. spacer 1.1|841416|48|NZ_AP017610|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 8, identity: 0.833

aaaccgtaggcctgataagacgcgcaagcgtcg-catcaggcaaacagc	CRISPR spacer
aacctgtaggcctgataagacgcgcaagcgtcgccatcaggcatctca-	Protospacer
** *.**************************** *********  . .

83. spacer 2.1|2978748|32|NZ_AP017610|CRT matches to MK455769 (Aeromonas phage MJG, complete genome) position: , mismatch: 8, identity: 0.75

-taagtgatatccatcatcgcatccagtgcgtc	CRISPR spacer
gcctccgat-tccatcattgcatacagtgcgtc	Protospacer
 .   .*** ********.**** *********

84. spacer 2.5|2978992|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NC_009717 (Xanthobacter autotrophicus Py2 plasmid pXAUT01, complete sequence) position: , mismatch: 8, identity: 0.75

atcaaactgctgcaacggccagcgcagccacg	CRISPR spacer
acggtcctgctgcaacggcaagcgcggccagg	Protospacer
*. .  ************* *****.**** *

85. spacer 2.5|2978992|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP010657 (Phaeobacter piscinae strain P71 plasmid pP71_a, complete sequence) position: , mismatch: 8, identity: 0.75

--atcaaactgctgcaacggccagcgcagccacg	CRISPR spacer
gaaccag--cgctgcaactgccagcgccgccaca	Protospacer
  *.**.  .******** ******** *****.

86. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NZ_KX426227 (Acinetobacter lwoffii strain ED23-35 plasmid pALWED1.1, complete sequence) position: , mismatch: 8, identity: 0.75

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttgatcgcaaatatggtccaattgaagctcat	Protospacer
*.************* ***.***** *   *

87. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to CP033569 (Acinetobacter pittii strain 2014N21-145 plasmid p2014N21-145-1, complete sequence) position: , mismatch: 8, identity: 0.75

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttgatcgcaaatatggtccaattgaagcgcat	Protospacer
*.************* ***.***** * . *

88. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP033130 (Acinetobacter wuhouensis strain WCHAW010062 plasmid pOXA23_010062, complete sequence) position: , mismatch: 8, identity: 0.75

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttgatcgcaaatatggtccaattgaagcgcat	Protospacer
*.************* ***.***** * . *

89. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to CP033531 (Acinetobacter pittii strain 2014S07-126 plasmid p2014S07-126-1, complete sequence) position: , mismatch: 8, identity: 0.75

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttgatcgcaaatatggtccaattgaagcgcat	Protospacer
*.************* ***.***** * . *

90. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP042557 (Acinetobacter baumannii strain E47 plasmid pE47_001, complete sequence) position: , mismatch: 8, identity: 0.75

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttgatcgcaaatatggtccaattgaagcgcat	Protospacer
*.************* ***.***** * . *

91. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP010351 (Acinetobacter johnsonii XBB1 plasmid pXBB1-9, complete sequence) position: , mismatch: 8, identity: 0.75

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttgatcgcaaatatggtccaattgaagcgcat	Protospacer
*.************* ***.***** * . *

92. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP029396 (Acinetobacter defluvii strain WCHA30 plasmid pOXA58_010030, complete sequence) position: , mismatch: 8, identity: 0.75

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttgatcgcaaatatggtccaattgaagcgcat	Protospacer
*.************* ***.***** * . *

93. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP048828 (Acinetobacter baumannii strain ABF9692 plasmid pABF9692, complete sequence) position: , mismatch: 8, identity: 0.75

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttgatcgcaaatatggtccaattgaagcgcat	Protospacer
*.************* ***.***** * . *

94. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP032285 (Acinetobacter sp. WCHA55 plasmid pOXA58_010055, complete sequence) position: , mismatch: 8, identity: 0.75

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttgatcgcaaatatggtccaattgaagcgcat	Protospacer
*.************* ***.***** * . *

95. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP042365 (Acinetobacter pittii strain C54 plasmid pC54_001, complete sequence) position: , mismatch: 8, identity: 0.75

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttgatcgcaaatatggtccaattgaagcgcat	Protospacer
*.************* ***.***** * . *

96. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NZ_MK134375 (Acinetobacter baumannii strain 34AB plasmid p34AB, complete sequence) position: , mismatch: 8, identity: 0.75

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttgatcgcaaatatggtccaattgaagcgcat	Protospacer
*.************* ***.***** * . *

97. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP038010 (Acinetobacter haemolyticus strain TJR01 plasmid pAHTJR1, complete sequence) position: , mismatch: 8, identity: 0.75

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttgatcgcaaatatggtccaattgaagcgcat	Protospacer
*.************* ***.***** * . *

98. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP043053 (Acinetobacter pittii strain AP43 plasmid pAP43-OXA58-NDM1, complete sequence) position: , mismatch: 8, identity: 0.75

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttgatcgcaaatatggtccaattgaagcgcat	Protospacer
*.************* ***.***** * . *

99. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NZ_MH220285 (Acinetobacter ursingii strain RIVM0002 plasmid pRIVM0002_IMP-4_171109_B03, complete sequence) position: , mismatch: 8, identity: 0.75

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttgatcgcaaatatggtccaattgaagcgcat	Protospacer
*.************* ***.***** * . *

100. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NZ_MH220287 (Acinetobacter ursingii strain RIVM0061 plasmid pRIVM0061_IMP-4_171109_B01, complete sequence) position: , mismatch: 8, identity: 0.75

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttgatcgcaaatatggtccaattgaagcgcat	Protospacer
*.************* ***.***** * . *

101. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP043309 (Acinetobacter johnsonii strain Acsw19 plasmid pAcsw19-2, complete sequence) position: , mismatch: 8, identity: 0.75

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttgatcgcaaatatggtccaattgaagcgcat	Protospacer
*.************* ***.***** * . *

102. spacer 2.12|2979419|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NZ_MH220286 (Acinetobacter ursingii strain RIVM0051 plasmid pRIVM0051_IMP-4, complete sequence) position: , mismatch: 8, identity: 0.75

tcgatcgcaaatatgctccgattgatgaaaag	CRISPR spacer
ttgatcgcaaatatggtccaattgaagcgcat	Protospacer
*.************* ***.***** * . *

103. spacer 2.20|2979907|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NZ_KP453775 (Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence) position: , mismatch: 8, identity: 0.75

caaaaaataaaataaaggcaatgttttcaatg	CRISPR spacer
taaaaaattaaataaagccaatgttttagcga	Protospacer
.******* ******** ********* .  .

104. spacer 3.4|3005881|32|NZ_AP017610|CRISPRCasFinder,CRT matches to NZ_LT904880 (Salmonella enterica subsp. enterica serovar Typhi strain ty3-193 genome assembly, plasmid: 3) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

105. spacer 3.4|3005881|32|NZ_AP017610|CRISPRCasFinder,CRT matches to NZ_LT904895 (Salmonella enterica subsp. enterica serovar Typhi strain ERL12960 genome assembly, plasmid: 2) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

106. spacer 3.4|3005881|32|NZ_AP017610|CRISPRCasFinder,CRT matches to NZ_CP012254 (Cronobacter sakazakii strain NCTC 8155 plasmid pCS1, complete sequence) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
tgataacgctacacagacttataacaatcatt	Protospacer
.*.  **  ********.***** ********

107. spacer 3.4|3005881|32|NZ_AP017610|CRISPRCasFinder,CRT matches to NZ_CP029647 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_217186 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

108. spacer 3.4|3005881|32|NZ_AP017610|CRISPRCasFinder,CRT matches to NZ_LT904853 (Salmonella enterica subsp. enterica serovar Typhi strain TY585 genome assembly, plasmid: 2) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

109. spacer 3.4|3005881|32|NZ_AP017610|CRISPRCasFinder,CRT matches to NC_003385 (Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

110. spacer 3.4|3005881|32|NZ_AP017610|CRISPRCasFinder,CRT matches to NZ_CP029859 (Salmonella enterica subsp. enterica serovar Typhi strain 343077_285138 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

111. spacer 3.4|3005881|32|NZ_AP017610|CRISPRCasFinder,CRT matches to NZ_CP029847 (Salmonella enterica subsp. enterica serovar Typhi strain 343078_273110 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

112. spacer 3.4|3005881|32|NZ_AP017610|CRISPRCasFinder,CRT matches to NZ_CP029916 (Salmonella enterica subsp. enterica serovar Typhi strain 343076_202113 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

113. spacer 3.4|3005881|32|NZ_AP017610|CRISPRCasFinder,CRT matches to NZ_CP029893 (Salmonella enterica subsp. enterica serovar Typhi strain 343076_252143 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

114. spacer 3.4|3005881|32|NZ_AP017610|CRISPRCasFinder,CRT matches to NZ_CP029876 (Salmonella enterica subsp. enterica serovar Typhi strain 343076_227128 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

115. spacer 3.4|3005881|32|NZ_AP017610|CRISPRCasFinder,CRT matches to NZ_CP029884 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_268186 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

116. spacer 3.4|3005881|32|NZ_AP017610|CRISPRCasFinder,CRT matches to NZ_CP029961 (Salmonella enterica subsp. enterica serovar Typhi strain 343078_251131 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

117. spacer 3.4|3005881|32|NZ_AP017610|CRISPRCasFinder,CRT matches to NZ_CP029849 (Salmonella enterica subsp. enterica serovar Typhi strain 343078_211126 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

118. spacer 3.4|3005881|32|NZ_AP017610|CRISPRCasFinder,CRT matches to NZ_CP029857 (Salmonella enterica subsp. enterica serovar Typhi strain 343077_286126 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

119. spacer 3.4|3005881|32|NZ_AP017610|CRISPRCasFinder,CRT matches to NZ_CP029929 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_216103 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

120. spacer 3.4|3005881|32|NZ_AP017610|CRISPRCasFinder,CRT matches to NZ_CP029865 (Salmonella enterica subsp. enterica serovar Typhi strain 343077_228157 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

121. spacer 3.4|3005881|32|NZ_AP017610|CRISPRCasFinder,CRT matches to NZ_LT883154 (Salmonella enterica subsp. enterica serovar Typhi strain ERL12148 genome assembly, plasmid: 2) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

122. spacer 3.4|3005881|32|NZ_AP017610|CRISPRCasFinder,CRT matches to NZ_CP029905 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_231186 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

123. spacer 3.4|3005881|32|NZ_AP017610|CRISPRCasFinder,CRT matches to NZ_CP029851 (Salmonella enterica subsp. enterica serovar Typhi strain 343078_203125 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

124. spacer 3.4|3005881|32|NZ_AP017610|CRISPRCasFinder,CRT matches to NZ_CP040567 (Salmonella enterica subsp. enterica serovar Typhimurium strain SAP17-7299 plasmid pCFSAN059543, complete sequence) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

125. spacer 3.4|3005881|32|NZ_AP017610|CRISPRCasFinder,CRT matches to NZ_CP029889 (Salmonella enterica subsp. enterica serovar Typhi strain 343076_294172 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

126. spacer 3.4|3005881|32|NZ_AP017610|CRISPRCasFinder,CRT matches to NZ_CP029891 (Salmonella enterica subsp. enterica serovar Typhi strain 343076_253155 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

127. spacer 3.4|3005881|32|NZ_AP017610|CRISPRCasFinder,CRT matches to NZ_CP029898 (Salmonella enterica subsp. enterica serovar Typhi strain 343077_213147 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

128. spacer 3.4|3005881|32|NZ_AP017610|CRISPRCasFinder,CRT matches to NZ_CP029951 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_205186 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

129. spacer 3.4|3005881|32|NZ_AP017610|CRISPRCasFinder,CRT matches to NZ_CP029867 (Salmonella enterica subsp. enterica serovar Typhi strain 343077_228140 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

130. spacer 3.4|3005881|32|NZ_AP017610|CRISPRCasFinder,CRT matches to NZ_CP029901 (Salmonella enterica subsp. enterica serovar Typhi strain 343076_232188 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

131. spacer 3.4|3005881|32|NZ_AP017610|CRISPRCasFinder,CRT matches to NZ_CP029921 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_282186 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

132. spacer 3.8|3006125|32|NZ_AP017610|CRISPRCasFinder,CRT,PILER-CR matches to MK448716 (Streptococcus phage Javan249, complete genome) position: , mismatch: 8, identity: 0.75

gtcgataatattttgctgttgttttgttacgt	CRISPR spacer
aactataatcttttgctgtcgttttgttatta	Protospacer
. * ***** *********.*********.

133. spacer 2.1|2978748|32|NZ_AP017610|CRT matches to NC_047954 (Pseudomonas phage Njord, complete genome) position: , mismatch: 9, identity: 0.719

taagtgatatccatcatcgcatccagtgcgtc	CRISPR spacer
gcctcggcctccatcatcgcatcgagtgcgtc	Protospacer
    .*.. ************** ********

134. spacer 2.5|2978992|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP014942 (Rhodococcus sp. BH4 plasmid, complete sequence) position: , mismatch: 9, identity: 0.719

atcaaactgctgcaacggccagcgcagccacg	CRISPR spacer
tgcccgccgctgcagcggccagcgccgccacc	Protospacer
  *  .*.******.********** *****

135. spacer 2.20|2979907|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP011404 (Lactobacillus salivarius str. Ren plasmid pR1, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaaataaaataaaggcaatgttttcaatg	CRISPR spacer
ttaataataaaattaaggcaatgtttattaaa	Protospacer
. ** ******** ************ . * .

136. spacer 2.20|2979907|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP020859 (Lactobacillus salivarius strain ZLS006 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaaataaaataaaggcaatgttttcaatg	CRISPR spacer
ttaataataaaattaaggcaatgtttattaaa	Protospacer
. ** ******** ************ . * .

137. spacer 2.20|2979907|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP020859 (Lactobacillus salivarius strain ZLS006 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaaataaaataaaggcaatgttttcaatg	CRISPR spacer
ttaataataaaattaaggcaatgtttattaaa	Protospacer
. ** ******** ************ . * .

138. spacer 2.20|2979907|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP017108 (Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence) position: , mismatch: 9, identity: 0.719

caaaaaataaaataaaggcaatgttttcaatg	CRISPR spacer
ttaataataaaattaaggcaatgtttattaaa	Protospacer
. ** ******** ************ . * .

139. spacer 2.20|2979907|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP017110 (Lactobacillus salivarius strain CICC23174 plasmid pLS_3, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaaataaaataaaggcaatgttttcaatg	CRISPR spacer
ttaataataaaattaaggcaatgtttattaaa	Protospacer
. ** ******** ************ . * .

140. spacer 2.20|2979907|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP029460 (Clostridium novyi strain 150557 plasmid pCN2, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaaataaaataaaggcaatgttttcaatg	CRISPR spacer
ttaaaaataaaataaatacaatgttctttttt	Protospacer
. ************** .*******.*.  *

141. spacer 3.2|3005759|32|NZ_AP017610|CRISPRCasFinder,CRT matches to NZ_CP021994 (Cryobacterium sp. LW097 plasmid unnamed1) position: , mismatch: 9, identity: 0.719

gcaaaacctgtcgatcttgatactggtcgctc	CRISPR spacer
tgaggtctggtcgatcttgctgctggtcgctc	Protospacer
  *.. *. ********** *.**********

142. spacer 3.3|3005820|32|NZ_AP017610|CRISPRCasFinder,CRT matches to AP014399 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C110A-MedDCM-OCT-S26-C20, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces) position: , mismatch: 9, identity: 0.719

ttgctgcaattttgtcttttaatttatcctag	CRISPR spacer
aatttgcaattatctcttttaatttatctgac	Protospacer
   .******* * **************. *

143. spacer 3.3|3005820|32|NZ_AP017610|CRISPRCasFinder,CRT matches to AP013383 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C110A-MedDCM-OCT-S24-C13) position: , mismatch: 9, identity: 0.719

ttgctgcaattttgtcttttaatttatcctag	CRISPR spacer
aatttgcaattatctcttttaatttatctgac	Protospacer
   .******* * **************. *

144. spacer 3.8|3006125|32|NZ_AP017610|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044347 (Escherichia coli strain P225M plasmid pP225M-CTX-M-55, complete sequence) position: , mismatch: 9, identity: 0.719

gtcgataatattttgctgttgttttgttacgt	CRISPR spacer
atgcataatatttcgctcttgttttgttctta	Protospacer
.*  *********.*** ********** .

145. spacer 3.8|3006125|32|NZ_AP017610|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032533 (Bacillus megaterium NCT-2 plasmid pNCT2_5, complete sequence) position: , mismatch: 9, identity: 0.719

gtcgataatattttgctgttgttttgttacgt	CRISPR spacer
tctcaccatattttactgtttttttgttacat	Protospacer
 .. *. *******.***** *********.*

146. spacer 3.10|3005760|32|NZ_AP017610|PILER-CR matches to NZ_CP021994 (Cryobacterium sp. LW097 plasmid unnamed1) position: , mismatch: 9, identity: 0.719

gcaaaacctgtcgatcttgatactggtcgctc	CRISPR spacer
tgaggtctggtcgatcttgctgctggtcgctc	Protospacer
  *.. *. ********** *.**********

147. spacer 3.11|3005821|32|NZ_AP017610|PILER-CR matches to AP014399 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C110A-MedDCM-OCT-S26-C20, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces) position: , mismatch: 9, identity: 0.719

ttgctgcaattttgtcttttaatttatcctag	CRISPR spacer
aatttgcaattatctcttttaatttatctgac	Protospacer
   .******* * **************. *

148. spacer 3.11|3005821|32|NZ_AP017610|PILER-CR matches to AP013383 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C110A-MedDCM-OCT-S24-C13) position: , mismatch: 9, identity: 0.719

ttgctgcaattttgtcttttaatttatcctag	CRISPR spacer
aatttgcaattatctcttttaatttatctgac	Protospacer
   .******* * **************. *

149. spacer 1.1|841416|48|NZ_AP017610|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 10, identity: 0.792

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
gttttgtaggcatgataagacgcgccagcgtcgcatcaggcatccggc	Protospacer
.  ..****** ************* ****************  *.**

150. spacer 1.1|841416|48|NZ_AP017610|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 10, identity: 0.792

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
gttttgtaggcatgataagacgcgccagcgtcgcatcaggcatccggc	Protospacer
.  ..****** ************* ****************  *.**

151. spacer 1.1|841416|48|NZ_AP017610|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 10, identity: 0.792

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
attttgtaggcctgataagacgcggcagcgtcgcatcaggcatcgtgc	Protospacer
*  ..*******************  ****************    **

152. spacer 2.1|2978748|32|NZ_AP017610|CRT matches to NC_047894 (Pseudomonas phage uligo, complete genome) position: , mismatch: 10, identity: 0.688

taagtgatatccatcatcgcatccagtgcgtc	CRISPR spacer
gcttctgcctccatcatcgcatcgagtgcgtc	Protospacer
    . .. ************** ********

153. spacer 2.5|2978992|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP048816 (Caulobacter rhizosphaerae strain KCTC 52515 plasmid unnamed) position: , mismatch: 10, identity: 0.688

atcaaactgctgcaacggccagcgcagccacg	CRISPR spacer
cctggcaagcggccacggccagcgcagccacg	Protospacer
 ....   ** ** ******************

154. spacer 2.9|2979236|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP031468 (Paraburkholderia caffeinilytica strain CF1 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.688

agtgagtatttcgcggacctcttcaccgatcg	CRISPR spacer
atctccgatttcgcggacgtcgtcaccgatta	Protospacer
* .    *********** ** ********..

155. spacer 2.9|2979236|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP014580 (Burkholderia sp. OLGA172 plasmid pOLGA1, complete sequence) position: , mismatch: 10, identity: 0.688

agtgagtatttcgcggacctcttcaccgatcg	CRISPR spacer
atctccgatttcgcggacgtcgtcaccgatta	Protospacer
* .    *********** ** ********..

156. spacer 2.20|2979907|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NC_018511 (Bacillus thuringiensis HD-789 plasmid pBTHD789-5, complete sequence) position: , mismatch: 10, identity: 0.688

caaaaaataaaataaaggcaatgttttcaatg	CRISPR spacer
aaaaaaataaaataaaagaaatgtaagaacga	Protospacer
 ***************.* *****    *  .

157. spacer 2.20|2979907|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NC_001446 (Bacillus thuringiensis sv israelensis HI4 plasmid pTX14-3, complete sequence) position: , mismatch: 10, identity: 0.688

caaaaaataaaataaaggcaatgttttcaatg	CRISPR spacer
aaaaaaataaaataaaagaaatgtaagaacga	Protospacer
 ***************.* *****    *  .

158. spacer 2.20|2979907|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP009345 (Bacillus thuringiensis HD1002 plasmid 6, complete sequence) position: , mismatch: 10, identity: 0.688

caaaaaataaaataaaggcaatgttttcaatg	CRISPR spacer
aaaaaaataaaataaaagaaatgtaagaacga	Protospacer
 ***************.* *****    *  .

159. spacer 2.20|2979907|32|NZ_AP017610|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP053657 (Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence) position: , mismatch: 10, identity: 0.688

caaaaaataaaataaaggcaatgttttcaatg	CRISPR spacer
atctaaataaaacaaaggaaatgttttaaggt	Protospacer
    ********.***** ******** *.

160. spacer 3.1|3005698|32|NZ_AP017610|CRISPRCasFinder,CRT matches to NZ_CP024940 (Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence) position: , mismatch: 10, identity: 0.688

tgcgtgatcccctcgctaacgtacatatcgat	CRISPR spacer
aggtcagtcccgtcgctaacgtaaatatcgcc	Protospacer
 *  ...**** *********** ****** .

161. spacer 3.8|3006125|32|NZ_AP017610|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045561 (Acinetobacter nosocomialis strain AC1530 plasmid pAC1530, complete sequence) position: , mismatch: 10, identity: 0.688

gtcgataatattttgctgttgttttgttacgt	CRISPR spacer
attttcaaaattttgctgttgtttttttatta	Protospacer
.*.  .** **************** ***.

162. spacer 3.8|3006125|32|NZ_AP017610|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014478 (Acinetobacter pittii strain AP_882 plasmid pNDM-AP_882, complete sequence) position: , mismatch: 10, identity: 0.688

gtcgataatattttgctgttgttttgttacgt	CRISPR spacer
attttcaaaattttgctgttgtttttttatta	Protospacer
.*.  .** **************** ***.

163. spacer 3.9|3005699|32|NZ_AP017610|PILER-CR matches to NZ_CP024940 (Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence) position: , mismatch: 10, identity: 0.688

tgcgtgatcccctcgctaacgtacatatcgat	CRISPR spacer
aggtcagtcccgtcgctaacgtaaatatcgcc	Protospacer
 *  ...**** *********** ****** .

164. spacer 1.1|841416|48|NZ_AP017610|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

165. spacer 1.1|841416|48|NZ_AP017610|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

166. spacer 1.1|841416|48|NZ_AP017610|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgca	Protospacer
** ..*******************. ****************  ..

167. spacer 1.1|841416|48|NZ_AP017610|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

168. spacer 1.1|841416|48|NZ_AP017610|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

169. spacer 1.1|841416|48|NZ_AP017610|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgca	Protospacer
** ..*******************. ****************  ..

170. spacer 1.1|841416|48|NZ_AP017610|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctggt	Protospacer
.. .******* ************* ****************  ..*.

171. spacer 1.1|841416|48|NZ_AP017610|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

172. spacer 1.1|841416|48|NZ_AP017610|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

173. spacer 1.1|841416|48|NZ_AP017610|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgca	Protospacer
** ..*******************. ****************  ..

174. spacer 1.1|841416|48|NZ_AP017610|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

175. spacer 1.1|841416|48|NZ_AP017610|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

176. spacer 1.1|841416|48|NZ_AP017610|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgca	Protospacer
** ..*******************. ****************  ..

177. spacer 1.1|841416|48|NZ_AP017610|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
cggctgtaggcctgataagacgcgacagcgtcgcatcaggcattgatt	Protospacer
 ..*.*******************  ****************   * .

178. spacer 1.1|841416|48|NZ_AP017610|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcg	Protospacer
.. .******* ************* ****************  ..

179. spacer 1.1|841416|48|NZ_AP017610|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgctagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

180. spacer 1.1|841416|48|NZ_AP017610|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

181. spacer 1.1|841416|48|NZ_AP017610|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgag	Protospacer
*.   *******************. ****************  ...

182. spacer 1.1|841416|48|NZ_AP017610|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcg	Protospacer
.. .******* ************* ****************  ..

183. spacer 1.1|841416|48|NZ_AP017610|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgctagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

184. spacer 1.1|841416|48|NZ_AP017610|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

185. spacer 1.1|841416|48|NZ_AP017610|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgag	Protospacer
*.   *******************. ****************  ...

186. spacer 1.1|841416|48|NZ_AP017610|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcg	Protospacer
.. .******* ************* ****************  ..

187. spacer 1.1|841416|48|NZ_AP017610|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgctagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

188. spacer 1.1|841416|48|NZ_AP017610|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

189. spacer 1.1|841416|48|NZ_AP017610|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgag	Protospacer
*.   *******************. ****************  ...

190. spacer 1.1|841416|48|NZ_AP017610|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcg	Protospacer
.. .******* ************* ****************  ..

191. spacer 1.1|841416|48|NZ_AP017610|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgctagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

192. spacer 1.1|841416|48|NZ_AP017610|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

193. spacer 1.1|841416|48|NZ_AP017610|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgag	Protospacer
*.   *******************. ****************  ...

194. spacer 1.1|841416|48|NZ_AP017610|CRISPRCasFinder matches to MT230402 (Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggtttgtaggcctgataagacgcgacagcgtcgcatcaggcattgatt	Protospacer
.. ..*******************  ****************   * .

195. spacer 1.1|841416|48|NZ_AP017610|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
taatacaaggcctgataagacgcgccagcgtcgcatcaggcgctgaat	Protospacer
 **.   ****************** ***************.   *..

196. spacer 1.1|841416|48|NZ_AP017610|CRISPRCasFinder matches to MT230312 (Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence) position: , mismatch: 13, identity: 0.729

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
gtctngtaggcctgataagacgcgtcagcgtcgcatcaggcttcaatt	Protospacer
.  . *******************. ***************    * .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

252256 : 328400

Enterobacteria_phage(27.27%)

transposase,integrase,protease

attL 246441:246457|attR 311230:311246

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
246441:246457	attL	NA	NA	NA	NA
WP_001305361.1\|252256_252859_+\|integrase	tyrosine-type recombinase/integrase	A0A1V0E036	Clostridioides_phage	1.8e-07	33.3
WP_000459982.1\|253182_253824_+	hypothetical protein	NA	NA	NA	NA
WP_001305362.1\|253941_254751_-	hypothetical protein	NA	NA	NA	NA
WP_000856947.1\|255233_257399_+	TonB-dependent receptor	NA	NA	NA	NA
WP_000778018.1\|257409_258399_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000217077.1\|258417_259476_+	iron ABC transporter permease	NA	NA	NA	NA
WP_000016205.1\|259472_260240_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-13	27.9
WP_001163787.1\|260293_260551_+	hypothetical protein	NA	NA	NA	NA
WP_000782654.1\|263083_263692_-	hypothetical protein	NA	NA	NA	NA
WP_001305352.1\|263779_263986_-	AlpA family transcriptional regulator	NA	NA	NA	NA
WP_001608035.1\|264369_265161_-	hypothetical protein	NA	NA	NA	NA
WP_072146520.1\|266226_266376_+	hemolysin activation protein	NA	NA	NA	NA
WP_000860849.1\|266607_267207_+	inovirus-type Gp2 protein	NA	NA	NA	NA
WP_000270955.1\|267578_267962_+	hypothetical protein	NA	NA	NA	NA
WP_001013326.1\|267958_268384_+	hypothetical protein	NA	NA	NA	NA
WP_000287897.1\|268855_269422_+	inovirus-type Gp2 protein	NA	NA	NA	NA
WP_001327840.1\|269526_269742_+	hypothetical protein	NA	NA	NA	NA
WP_001305346.1\|269809_270007_+	AlpA family transcriptional regulator	NA	NA	NA	NA
WP_000684812.1\|270325_270964_-	RpiB/LacA/LacB family sugar-phosphate isomerase	NA	NA	NA	NA
WP_001051732.1\|271214_272387_+	oligogalacturonate lyase	NA	NA	NA	NA
WP_000345753.1\|272416_273217_+	gluconate 5-dehydrogenase	NA	NA	NA	NA
WP_000497518.1\|273271_273595_+	cupin domain-containing protein	NA	NA	NA	NA
WP_001438615.1\|273960_275064_+	MFS transporter	NA	NA	NA	NA
WP_001608039.1\|275105_275474_+	hypothetical protein	NA	NA	NA	NA
WP_001032962.1\|275475_277710_+	exopolygalacturonate lyase	NA	NA	NA	NA
WP_001305344.1\|277817_278783_+	hypothetical protein	NA	NA	NA	NA
WP_001305343.1\|279102_279531_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_001529506.1\|279873_280332_-	hypothetical protein	NA	NA	NA	NA
WP_001305338.1\|281870_282653_-	DeoR family transcriptional regulator	NA	NA	NA	NA
WP_000350265.1\|282958_283879_+	ribokinase	NA	NA	NA	NA
WP_000998353.1\|283906_285223_+	L-fucose:H+ symporter permease	NA	NA	NA	NA
WP_000107474.1\|285234_286248_+	aldose 1-epimerase family protein	NA	NA	NA	NA
WP_001327567.1\|286669_286924_+\|transposase	transposase	Q6H9S5	Enterobacteria_phage	8.0e-21	62.2
WP_000345349.1\|287170_288427_-	PTS ascorbate transporter subunit IIC	NA	NA	NA	NA
WP_000705927.1\|288439_288727_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_000916811.1\|288742_289186_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_000416159.1\|289456_290488_+	LacI family DNA-binding transcriptional regulator	C6ZCU4	Enterobacteria_phage	2.3e-18	27.0
WP_001313589.1\|291242_291866_+	hypothetical protein	NA	NA	NA	NA
WP_001305333.1\|292087_293860_+	ShlB/FhaC/HecB family hemolysin secretion/activation protein	A0A0R6PI85	Moraxella_phage	1.0e-21	25.3
WP_000839181.1\|301490_301895_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	1.1e-69	99.3
WP_000612626.1\|301891_302239_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0
WP_000099202.1\|302287_303826_+\|transposase	IS66-like element ISEc22 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.3e-294	99.4
WP_000602704.1\|305971_306430_+	hypothetical protein	NA	NA	NA	NA
WP_001313590.1\|306505_306883_+	hypothetical protein	NA	NA	NA	NA
WP_001672744.1\|306895_307111_+	hypothetical protein	NA	NA	NA	NA
WP_001291700.1\|307381_307624_+	hypothetical protein	NA	NA	NA	NA
WP_001270785.1\|309365_309638_-	transcriptional regulator	NA	NA	NA	NA
WP_001045652.1\|309884_314000_-\|protease	serine protease autotransporter toxin Pic	Q9LA54	Enterobacteria_phage	0.0e+00	45.8
311230:311246	attR	NA	NA	NA	NA
WP_001304897.1\|318051_318354_+	PbsX family transcriptional regulator	NA	NA	NA	NA
WP_000823141.1\|318406_319654_+	TolC family protein	NA	NA	NA	NA
WP_000835430.1\|319678_321826_+	type I secretion system permease/ATPase	F2Y2R6	Organic_Lake_phycodnavirus	4.2e-22	26.9
WP_001304895.1\|321886_323134_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
WP_089541817.1\|327171_328400_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	2.7e-170	95.7

DBSCAN-SWA_2

619956 : 673661

Enterobacteria_phage(49.02%)

tRNA,tail,lysis,capsid,terminase,integrase,protease,holin,head,portal

attL 615365:615380|attR 644297:644312

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
615365:615380	attL	NA	NA	NA	NA
WP_000912345.1\|619956_621342_+\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.9e-45	34.8
WP_001143512.1\|621377_621899_-	metal-dependent hydrolase	NA	NA	NA	NA
WP_000190288.1\|622006_622219_-	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_000729156.1\|622220_623087_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.0e-30	37.5
WP_001317665.1\|623449_624613_-\|integrase	site-specific integrase	A0A088CD23	Shigella_phage	1.2e-199	86.3
WP_000206813.1\|624839_625145_-	hypothetical protein	U5P0J0	Shigella_phage	1.4e-48	95.0
WP_001242707.1\|625144_625507_-	phage protein	K7PH61	Enterobacteria_phage	4.4e-65	98.3
WP_000008164.1\|625515_626034_-	5'-deoxynucleotidase	U5P0T3	Shigella_phage	4.1e-96	98.3
WP_000081320.1\|626161_626986_-	DUF2303 family protein	U5P439	Shigella_phage	5.0e-149	99.6
WP_000135682.1\|627051_627414_-	hypothetical protein	U5P4J6	Shigella_phage	3.3e-60	100.0
WP_000559922.1\|627884_628400_+	hypothetical protein	NA	NA	NA	NA
WP_001020634.1\|628719_629412_-	helix-turn-helix transcriptional regulator	S5FUZ3	Shigella_phage	1.0e-126	100.0
WP_001191674.1\|629509_629770_+	helix-turn-helix transcriptional regulator	S5FKP1	Shigella_phage	7.1e-41	100.0
WP_000515847.1\|629762_630314_+	hypothetical protein	S5FXP0	Shigella_phage	2.9e-100	98.4
WP_001250269.1\|630489_630669_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	7.8e-15	68.5
WP_000104967.1\|630658_631600_+	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	1.3e-153	100.0
WP_001300314.1\|631596_632091_+	PerC family transcriptional regulator	A0A0P0ZCF0	Stx2-converting_phage	3.6e-86	98.1
WP_001317669.1\|632090_632744_+	phage N-6-adenine-methyltransferase	A5LH72	Enterobacteria_phage	9.6e-127	99.1
WP_000210187.1\|632740_633067_+	LexA family transcriptional regulator	A5LH73	Enterobacteria_phage	1.6e-53	100.0
WP_000767117.1\|633063_633453_+	RusA family crossover junction endodeoxyribonuclease	K7PH72	Enterobacteria_phage	7.1e-69	100.0
WP_001061438.1\|633472_634282_+	KilA-N domain-containing protein	A5LH75	Enterobacteria_phage	8.2e-152	100.0
WP_001535130.1\|634289_635279_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	3.6e-194	99.4
WP_001047122.1\|635292_636045_+	antitermination protein	Q8SBE4	Shigella_phage	8.4e-135	97.6
WP_000966854.1\|636199_636730_+	hypothetical protein	NA	NA	NA	NA
WP_001317671.1\|636912_637107_+	hypothetical protein	Q8SBE3	Shigella_phage	5.7e-27	95.3
WP_000799651.1\|637256_638318_+	site-specific DNA-methyltransferase	A5LH81	Enterobacteria_phage	2.7e-203	97.7
WP_000502162.1\|639196_639388_+	hypothetical protein	NA	NA	NA	NA
WP_000284486.1\|639410_639626_+\|holin	class II holin family protein	M1FN85	Enterobacteria_phage	1.0e-32	95.8
WP_000250557.1\|639630_639975_+	YdfR family protein	K7PGU6	Enterobacteria_phage	3.5e-35	90.5
WP_000370548.1\|639940_640213_-	hypothetical protein	NA	NA	NA	NA
WP_000992182.1\|640318_640852_+	lysozyme	K7PLY1	Enterobacteria_phage	2.6e-98	94.4
WP_001228695.1\|641068_641251_+\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	2.9e-17	98.3
WP_000738426.1\|641341_641635_-	increased serum survival lipoprotein Iss	C6ZCX3	Enterobacteria_phage	7.7e-44	90.7
WP_000830178.1\|642115_642442_+	TonB family protein	H6WZK5	Escherichia_phage	3.7e-39	72.2
WP_000881608.1\|642648_642831_+	hypothetical protein	NA	NA	NA	NA
WP_000453576.1\|643395_643941_+	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	4.7e-95	99.4
WP_001027289.1\|643915_645841_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.7
644297:644312	attR	NA	NA	NA	NA
WP_000198149.1\|645837_646044_+	gpW family protein	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
WP_001317723.1\|646040_647642_+\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	2.5e-309	98.9
WP_000123323.1\|647622_648942_+	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	2.1e-234	98.9
WP_001345004.1\|648951_649284_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	5.0e-55	99.1
WP_000063244.1\|649339_650365_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.8e-188	97.7
WP_000158868.1\|650406_650802_+	DNA-packaging protein FI	A0A2R9YJP4	Escherichia_phage	5.7e-58	95.5
WP_000752961.1\|650813_651188_+\|head,tail	head-tail joining protein	A0A2R9YJJ5	Escherichia_phage	8.0e-62	99.1
WP_000985135.1\|651178_651757_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	2.9e-79	98.4
WP_000683129.1\|651753_652149_+\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	8.5e-70	98.5
WP_001317730.1\|652156_652897_+\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	5.2e-129	97.2
WP_000479193.1\|652912_653335_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	2.2e-60	85.7
WP_000459457.1\|653316_653751_+\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	6.9e-65	100.0
WP_000840230.1\|653743_656305_+\|tail	phage tail tape measure protein	A0A0K2FI43	Enterobacteria_phage	0.0e+00	92.6
WP_000847345.1\|656301_656631_+\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	8.1e-58	98.2
WP_001152499.1\|656630_657329_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	7.8e-127	94.4
WP_096488154.1\|657334_658078_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	7.7e-149	97.2
WP_000090891.1\|658014_658647_+\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	2.2e-96	99.5
WP_096488155.1\|658707_662121_+	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	96.7
WP_001230523.1\|662191_662791_+	Ail/Lom family outer membrane beta-barrel protein	A0A0P0ZCF6	Stx2-converting_phage	1.8e-108	97.5
WP_096488156.1\|662855_665816_+\|tail	prophage tail fiber N-terminal domain-containing protein	A0A2D1UII2	Escherichia_phage	1.7e-58	99.1
WP_000885574.1\|665815_666400_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	1.2e-101	93.8
WP_000239881.1\|666454_667123_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_021525576.1\|667668_669153_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_001201825.1\|669339_670293_-\|protease	omptin family outer membrane protease OmpT	NA	NA	NA	NA
WP_000742375.1\|671807_672464_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_001357859.1\|672707_673661_-\|protease	omptin family outer membrane protease OmpT	NA	NA	NA	NA

DBSCAN-SWA_3

885934 : 939861

Enterobacteria_phage(57.14%)

tail,lysis,capsid,terminase,integrase,protease,head,portal

attL 877973:877989|attR 933179:933195

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
877973:877989	attL	NA	NA	NA	NA
WP_000533645.1\|885934_887005_-\|integrase	tyrosine-type recombinase/integrase	K7P6P6	Enterobacteria_phage	1.5e-201	99.7
WP_001303849.1\|886982_887201_-	excisionase	Q77WA4	Escherichia_phage	3.7e-35	100.0
WP_000545745.1\|887240_887408_-	hypothetical protein	A5VWB7	Enterobacteria_phage	2.9e-27	98.2
WP_000789830.1\|887644_888343_-	DUF1311 domain-containing protein	J9Q6K3	Salmonella_phage	1.6e-100	81.0
WP_001289879.1\|888473_889022_-	ead/Ea22-like family protein	K7PKY4	Enterobacterial_phage	7.7e-45	58.2
WP_000763363.1\|889018_889240_-	TraR/DksA family transcriptional regulator	A0A0N7C211	Escherichia_phage	6.4e-35	98.6
WP_001395510.1\|889338_889620_-	cell division protein ZapA	A0A0P0ZE02	Stx2-converting_phage	2.5e-47	100.0
WP_000548531.1\|889630_889822_-	DUF1382 family protein	A0A0P0ZC67	Stx2-converting_phage	7.3e-27	100.0
WP_000149532.1\|889794_889977_-	DUF1317 domain-containing protein	A0A0N7CHV0	Escherichia_phage	2.8e-28	96.7
WP_000186851.1\|889973_890654_-	YqaJ viral recombinase family protein	Q6H9Z0	Enterobacteria_phage	1.2e-132	100.0
WP_001317715.1\|890650_891436_-	phage recombination protein Bet	A0A0N7KZJ3	Stx2-converting_phage	4.1e-148	99.2
WP_000995439.1\|891441_891738_-	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	1.6e-49	100.0
WP_000358700.1\|891812_891956_-	host cell division inhibitory peptide Kil	A0A0N7C2U2	Escherichia_phage	1.8e-17	95.7
WP_001198858.1\|891948_892089_-\|protease	protease FtsH-inhibitory lysogeny factor CIII	Q776Q5	Enterobacteria_phage	3.3e-21	100.0
WP_000065373.1\|892161_892530_-	DUF2528 family protein	M1FPD2	Enterobacteria_phage	7.6e-65	99.2
WP_001278766.1\|892786_893281_+	hypothetical protein	K7P861	Enterobacteria_phage	1.4e-85	99.4
WP_001317717.1\|893273_893597_-	antitermination protein	K7P718	Enterobacteria_phage	1.0e-52	100.0
WP_000708836.1\|894078_894936_-	NYN domain-containing protein	A4JWQ6	Burkholderia_virus	5.8e-39	39.7
WP_001274756.1\|895063_895777_-	LexA family transcriptional regulator	A4KWV9	Enterobacteria_phage	3.5e-130	99.2
WP_000437875.1\|895877_896078_+	hypothetical protein	A4KWT7	Enterobacteria_phage	4.3e-30	100.0
WP_000251069.1\|896196_896490_+	hypothetical protein	A2SY75	Escherichia_phage	3.7e-46	100.0
WP_000185516.1\|896522_897422_+	replication protein	A0A0K2FJ31	Enterobacteria_phage	1.1e-173	99.7
WP_000788877.1\|897418_898120_+	Replication protein 14	K7P6G2	Enterobacteria_phage	9.9e-130	100.0
WP_000145926.1\|898116_898407_+	protein ren	O48423	Enterobacteria_phage	9.6e-47	100.0
WP_000736903.1\|898480_898921_+	recombination protein NinB	A0A220NRM1	Escherichia_phage	7.0e-81	100.0
WP_000153273.1\|898917_899445_+	phage N-6-adenine-methyltransferase	A0A1I9LJP9	Stx_converting_phage	1.4e-99	99.4
WP_001254223.1\|899441_899618_+	NinE family protein	K7PHE6	Enterobacteria_phage	1.4e-27	98.3
WP_000386641.1\|899620_899962_+	DUF2591 family protein	Q76H72	Enterobacteria_phage	6.2e-61	95.6
WP_001099702.1\|900168_900531_+	crossover junction endodeoxyribonuclease RusA	K7PM48	Enterobacteria_phage	3.6e-59	94.8
WP_000971055.1\|900527_900668_+	YlcG family protein	K7PHH3	Enterobacteria_phage	1.1e-08	69.8
WP_001204791.1\|900753_901137_+	antitermination protein QuuD	A0A088CD47	Shigella_phage	4.4e-55	83.3
WP_000737280.1\|901326_902424_-	porin OmpC	Q1MVN1	Enterobacteria_phage	6.7e-157	77.1
WP_000839597.1\|902996_903212_+\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	2.6e-33	100.0
WP_001135252.1\|903211_903709_+	lysozyme RrrD	A0A1B5FP97	Escherichia_phage	7.9e-89	95.8
WP_001228695.1\|903925_904108_+\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	2.9e-17	98.3
WP_000738421.1\|904198_904492_-	increased serum survival lipoprotein Iss	K7PL54	Enterobacteria_phage	5.9e-44	90.7
WP_001415975.1\|904853_905048_-	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	4.3e-27	96.9
WP_000453587.1\|905436_905982_+	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	1.4e-94	98.9
WP_001027289.1\|905956_907882_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.7
WP_000198149.1\|907878_908085_+	gpW family protein	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
WP_001317723.1\|908081_909683_+\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	2.5e-309	98.9
WP_000123323.1\|909663_910983_+	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	2.1e-234	98.9
WP_001338090.1\|910992_911325_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	6.5e-55	99.1
WP_000896725.1\|911788_913024_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4JB45	uncultured_Caudovirales_phage	1.1e-99	44.9
WP_000737991.1\|913025_913253_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_001049528.1\|913322_913859_-	hypothetical protein	NA	NA	NA	NA
WP_000179575.1\|914209_914515_-	hypothetical protein	NA	NA	NA	NA
WP_001390072.1\|914705_914903_+	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
WP_000920679.1\|914895_915081_+	hypothetical protein	NA	NA	NA	NA
WP_001156310.1\|915080_915272_+	hypothetical protein	A0A286S1P8	Klebsiella_phage	1.1e-11	59.3
WP_001091145.1\|915272_915494_+	hypothetical protein	NA	NA	NA	NA
WP_000425298.1\|915511_915811_+	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_000761770.1\|915807_917559_+	DNA primase	Q7M2A8	Enterobacteria_phage	2.2e-93	40.6
WP_000557480.1\|917848_918091_+	hypothetical protein	NA	NA	NA	NA
WP_001317725.1\|918102_918552_+	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_000228111.1\|918769_919810_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	5.7e-65	42.1
WP_000190778.1\|919819_920161_+\|head	head decoration protein	NA	NA	NA	NA
WP_001178671.1\|920172_920556_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_000158868.1\|923375_923771_+	DNA-packaging protein FI	A0A2R9YJP4	Escherichia_phage	5.7e-58	95.5
WP_000752961.1\|923782_924157_+\|head,tail	head-tail joining protein	A0A2R9YJJ5	Escherichia_phage	8.0e-62	99.1
WP_000985135.1\|924147_924726_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	2.9e-79	98.4
WP_000683129.1\|924722_925118_+\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	8.5e-70	98.5
WP_001317730.1\|925125_925866_+\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	5.2e-129	97.2
WP_000479193.1\|925881_926304_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	2.2e-60	85.7
WP_000459457.1\|926285_926720_+\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	6.9e-65	100.0
WP_000840230.1\|926712_929274_+\|tail	phage tail tape measure protein	A0A0K2FI43	Enterobacteria_phage	0.0e+00	92.6
WP_000847345.1\|929270_929600_+\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	8.1e-58	98.2
WP_004029407.1\|929599_930298_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	1.2e-127	94.8
WP_021525597.1\|930303_931047_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	5.6e-147	96.0
WP_050541368.1\|930983_931586_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	4.7e-88	85.1
WP_096488158.1\|931646_935144_+	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	98.0
933179:933195	attR	NA	NA	NA	NA
WP_001695589.1\|935214_935814_+	Ail/Lom family outer membrane beta-barrel protein	A0A0P0ZCF6	Stx2-converting_phage	4.1e-108	97.5
WP_096488159.1\|935878_939280_+\|tail	prophage tail fiber N-terminal domain-containing protein	X2KTY7	Enterobacteria_phage	8.2e-12	38.2
WP_001317842.1\|939279_939861_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	4.7e-101	93.2

DBSCAN-SWA_4

1687181 : 1743521

Enterobacteria_phage(42.86%)

tail,lysis,terminase,integrase,protease,portal

attL 1717242:1717258|attR 1748215:1748231

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000527790.1\|1687181_1688642_-	mannitol dehydrogenase family protein	G8DCZ3	Micromonas_pusilla_virus	5.1e-43	29.7
WP_000347482.1\|1688730_1690014_-	MHS family MFS transporter	NA	NA	NA	NA
WP_120795384.1\|1690618_1690732_+	Rac prophage; protein YnaM	A0A1C9IHU6	Salmonella_phage	8.4e-07	80.6
WP_000836768.1\|1690800_1691034_+	cold shock protein YdfK	A0A192Y6D5	Salmonella_phage	1.1e-32	88.3
WP_000086527.1\|1691350_1691941_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	1.6e-24	38.8
WP_000885611.1\|1692038_1692614_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	6.5e-103	95.3
WP_021524879.1\|1692613_1695685_-\|tail	prophage tail fiber N-terminal domain-containing protein	U5N099	Enterobacteria_phage	1.9e-68	82.1
WP_001230290.1\|1695749_1696349_-	Ail/Lom family outer membrane beta-barrel protein	A0A0P0ZCF6	Stx2-converting_phage	9.7e-110	98.0
WP_000515698.1\|1696418_1699832_-	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	97.1
WP_000741589.1\|1699892_1700540_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	1.9e-111	97.2
WP_000140751.1\|1700437_1701181_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	2.3e-148	97.6
WP_001152405.1\|1701186_1701885_-\|tail	phage minor tail protein L	A5LH40	Enterobacteria_phage	3.3e-133	98.7
WP_000447248.1\|1701894_1702224_-\|tail	phage tail protein	A0A291AWW9	Escherichia_phage	1.7e-60	100.0
WP_000372023.1\|1702223_1705289_-\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	0.0e+00	99.1
WP_001161009.1\|1705260_1705590_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	7.6e-56	100.0
WP_001341514.1\|1705598_1705985_-\|tail	phage minor tail protein G	K7PLV8	Enterobacteria_phage	5.2e-64	97.7
WP_000211132.1\|1706045_1706789_-\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	8.1e-130	97.2
WP_001079398.1\|1706799_1707201_-\|tail	tail protein	A0A291AWY2	Escherichia_phage	8.3e-73	100.0
WP_000677102.1\|1707197_1707776_-\|tail	phage tail protein	A5LH33	Enterobacteria_phage	1.2e-101	99.5
WP_001283153.1\|1707787_1708063_-	DNA breaking-rejoining protein	K7PH43	Enterobacteria_phage	2.3e-45	100.0
WP_001097039.1\|1708055_1708379_-	DUF2190 family protein	K7PLV6	Enterobacteria_phage	1.5e-51	99.1
WP_001136588.1\|1708465_1710493_-\|protease	Clp protease ClpP	K7PGT6	Enterobacteria_phage	0.0e+00	99.7
WP_000985958.1\|1710437_1711946_-\|portal	phage portal protein	A5LH29	Enterobacteria_phage	6.6e-288	99.4
WP_001072975.1\|1711945_1712158_-	hypothetical protein	A5LH28	Enterobacteria_phage	1.1e-31	100.0
WP_000934104.1\|1712154_1714257_-\|terminase	phage terminase large subunit family protein	A0A291AWY5	Escherichia_phage	0.0e+00	96.7
WP_000373430.1\|1714256_1714751_-	DUF1441 family protein	A0A291AWV8	Escherichia_phage	1.7e-83	99.4
WP_000548593.1\|1715303_1715510_-	hypothetical protein	A0A0K2FJ18	Enterobacteria_phage	3.4e-22	79.4
WP_001019206.1\|1715805_1715979_-	addiction module toxin, GnsA/GnsB family	NA	NA	NA	NA
WP_001443523.1\|1716151_1716307_-	hypothetical protein	NA	NA	NA	NA
WP_071526745.1\|1716454_1716643_-	cold-shock protein	NA	NA	NA	NA
WP_000066495.1\|1716653_1716866_-	cold shock protein CspI	A0A1W6JNX5	Morganella_phage	1.2e-22	74.3
WP_001071776.1\|1717229_1717727_-	DUF2514 domain-containing protein	NA	NA	NA	NA
1717242:1717258	attL	NA	NA	NA	NA
WP_001092966.1\|1717723_1718257_-	lysozyme	K7PLY1	Enterobacteria_phage	8.4e-97	93.2
WP_000196128.1\|1718253_1718565_-	DUF1327 domain-containing protein	K7PGU6	Enterobacteria_phage	1.5e-24	62.6
WP_000839562.1\|1718569_1718785_-\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	1.3e-32	94.4
WP_001348108.1\|1719036_1719411_-	hypothetical protein	NA	NA	NA	NA
WP_000562553.1\|1720376_1720508_-	DUF3927 family protein	H6WZJ7	Escherichia_phage	3.7e-06	100.0
WP_000762886.1\|1721403_1722225_-	antitermination protein	K7P7B9	Enterobacteria_phage	2.1e-78	59.0
WP_000904111.1\|1722239_1722596_-	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	6.1e-35	62.7
WP_001376415.1\|1722608_1723658_-	DUF968 domain-containing protein	U5P0K4	Shigella_phage	6.5e-109	54.6
WP_032140164.1\|1723659_1723938_-	hypothetical protein	A0A077KB22	Edwardsiella_phage	6.1e-06	37.1
WP_000980999.1\|1724004_1724256_-	hypothetical protein	NA	NA	NA	NA
WP_000887491.1\|1724472_1724685_-	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	1.7e-29	97.1
WP_001546200.1\|1724729_1724837_+	hypothetical protein	Q7Y2Q9	Escherichia_phage	2.5e-08	96.6
WP_000991111.1\|1725371_1726721_+	hypothetical protein	A0A1W6JNS5	Morganella_phage	4.4e-259	98.0
WP_001151189.1\|1727155_1727557_-	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	2.4e-64	95.5
WP_000054505.1\|1727597_1728563_-	hypothetical protein	U5P0A0	Shigella_phage	2.9e-55	61.2
WP_000705349.1\|1728543_1729065_-	hypothetical protein	NA	NA	NA	NA
WP_000476993.1\|1729048_1729276_-	transcriptional regulator	NA	NA	NA	NA
WP_001003381.1\|1729353_1729761_+	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	2.5e-24	46.2
WP_000379591.1\|1729953_1730106_+	DUF1391 family protein	M4QQ57	Salicola_phage	6.6e-07	53.2
WP_001241299.1\|1730105_1730483_+	hypothetical protein	NA	NA	NA	NA
WP_000159335.1\|1730451_1730652_-	hypothetical protein	NA	NA	NA	NA
WP_001317853.1\|1731154_1731343_+	hypothetical protein	NA	NA	NA	NA
WP_001090200.1\|1731339_1731531_+	DUF1482 family protein	NA	NA	NA	NA
WP_001555541.1\|1731623_1734095_+	exonuclease	A0A192Y6E0	Salmonella_phage	8.5e-59	57.5
WP_000005552.1\|1734167_1734419_+	excisionase family protein	S4TND0	Salmonella_phage	2.2e-15	50.0
WP_000876980.1\|1734453_1735734_+\|integrase	site-specific integrase	B6DZ48	Enterobacteria_phage	1.3e-156	62.6
WP_001389342.1\|1735735_1735864_-	hypothetical protein	NA	NA	NA	NA
WP_000836040.1\|1735921_1736941_-	Zn-dependent oxidoreductase	E3SJ82	Synechococcus_phage	3.3e-17	26.2
WP_001295394.1\|1736952_1738167_-	starvation-sensing protein RspA	Q6A202	Oenococcus_phage	1.4e-46	29.0
WP_001295395.1\|1738372_1738699_-	YnfA family protein	A0A218MNG8	uncultured_virus	7.6e-24	55.6
WP_000705195.1\|1738833_1739175_+	DUF1283 family protein	NA	NA	NA	NA
WP_001138584.1\|1739209_1739770_+	spermidine N1-acetyltransferase	NA	NA	NA	NA
WP_001445899.1\|1739772_1740483_-	YnfC family lipoprotein	NA	NA	NA	NA
WP_001317855.1\|1740590_1740896_+	DUF1161 domain-containing protein	NA	NA	NA	NA
WP_000041658.1\|1741094_1743521_+	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	3.8e-213	49.1
1748215:1748231	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2115027 : 2158521

Escherichia_phage(42.22%)

tail,capsid,terminase,integrase,protease,holin,head,portal

attL 2122041:2122055|attR 2160324:2160338

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000859544.1\|2115027_2115600_-	cytolethal distending toxin type I subunit CdtC	A5LH54	Enterobacteria_phage	5.3e-105	98.9
WP_000734593.1\|2115596_2116418_-	cytolethal distending toxin type I nuclease subunit CdtB	A5LH53	Enterobacteria_phage	1.5e-153	100.0
WP_000358619.1\|2116414_2117128_-	cytolethal distending toxin type I subunit CdtA	A5LH52	Enterobacteria_phage	2.9e-137	100.0
WP_000355702.1\|2117627_2117918_-	hypothetical protein	NA	NA	NA	NA
WP_001204579.1\|2117927_2118206_-	hypothetical protein	A0A0E3JSQ1	Enterobacteria_phage	7.9e-22	50.5
WP_096488173.1\|2118202_2120269_-\|tail	prophage tail fiber N-terminal domain-containing protein	A0A1X7QGG5	Escherichia_phage	1.1e-160	66.9
WP_001233170.1\|2120333_2120933_-	Ail/Lom family outer membrane beta-barrel protein	H6WZM8	Escherichia_phage	8.5e-106	94.0
WP_000515673.1\|2121000_2124699_-	DUF1983 domain-containing protein	A0A291AWT4	Escherichia_phage	0.0e+00	75.6
2122041:2122055	attL	NA	NA	NA	NA
WP_014639483.1\|2124759_2125368_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.9e-101	94.1
WP_000140743.1\|2125304_2126048_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	4.1e-150	97.6
WP_001152449.1\|2126053_2126752_-\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	1.3e-129	96.1
WP_001330090.1\|2126751_2127108_-\|tail	phage tail protein	A0A0P0ZDL9	Stx2-converting_phage	2.8e-40	66.7
WP_001552446.1\|2127085_2130313_-\|tail	phage tail tape measure protein	A0A1B5FPE2	Escherichia_phage	0.0e+00	96.0
WP_099156450.1\|2130359_2130638_-	DUF4035 domain-containing protein	A0A1B5FP87	Escherichia_phage	8.1e-43	96.7
WP_000164661.1\|2130661_2131033_-\|tail	tail assembly protein	A0A1B5FP91	Escherichia_phage	6.5e-64	100.0
WP_000097533.1\|2131047_2131752_-	hypothetical protein	A0A1B5FP82	Escherichia_phage	1.5e-117	96.2
WP_001209399.1\|2131811_2132156_-	DUF3168 domain-containing protein	A0A1B5FP84	Escherichia_phage	4.2e-57	100.0
WP_000347790.1\|2132152_2132599_-	HK97 gp10 family phage protein	S4TR46	Salmonella_phage	2.3e-63	80.4
WP_001147820.1\|2132598_2132937_-\|head	phage head closure protein	A0A1B5FP90	Escherichia_phage	1.6e-56	99.1
WP_000983037.1\|2132945_2133251_-\|head,tail	phage gp6-like head-tail connector protein	A0A1B5FP86	Escherichia_phage	9.2e-40	100.0
WP_000601355.1\|2133262_2133451_-	hypothetical protein	A0A1B5FP98	Escherichia_phage	7.2e-27	100.0
WP_000257488.1\|2133502_2134708_-\|capsid	phage major capsid protein	U5P0G9	Shigella_phage	3.8e-222	98.8
WP_001193631.1\|2134722_2135373_-\|head,protease	HK97 family phage prohead protease	U5P4H2	Shigella_phage	2.5e-119	100.0
WP_000466272.1\|2135350_2136592_-\|portal	phage portal protein	U5P411	Shigella_phage	1.3e-241	99.3
WP_000478567.1\|2136591_2136774_-	hypothetical protein	A0A1B5FP99	Escherichia_phage	1.1e-24	96.7
WP_001140901.1\|2136785_2138543_-\|terminase	terminase large subunit	A0A1B5FP96	Escherichia_phage	0.0e+00	99.3
WP_001317918.1\|2138542_2139025_-\|terminase	phage terminase small subunit P27 family	A0A1B5FPA0	Escherichia_phage	5.7e-84	97.5
WP_001140099.1\|2139173_2139524_-	HNH endonuclease	A0A1B5FP94	Escherichia_phage	1.2e-64	98.3
WP_000671994.1\|2139531_2139732_-	hypothetical protein	NA	NA	NA	NA
WP_001114684.1\|2139976_2140462_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001228685.1\|2140702_2140888_-	hypothetical protein	A0A0P0ZE50	Stx2-converting_phage	6.4e-20	80.3
WP_001274714.1\|2141104_2141638_-	lysozyme	K7PLY1	Enterobacteria_phage	5.1e-102	99.4
WP_000193273.1\|2141693_2142008_-	YdfR family protein	K7PGU6	Enterobacteria_phage	8.3e-52	99.0
WP_000839572.1\|2142012_2142228_-\|holin	class II holin family protein	M1FN85	Enterobacteria_phage	5.3e-34	98.6
WP_001064894.1\|2143024_2143714_-	antiterminator	I6PDF8	Cronobacter_phage	9.6e-61	51.1
WP_000904122.1\|2143710_2144070_-	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	4.6e-38	65.8
WP_024190197.1\|2144082_2145132_-	DUF968 domain-containing protein	U5P0K4	Shigella_phage	1.4e-108	54.6
WP_032348564.1\|2145133_2145406_-	hypothetical protein	I6PCV7	Cronobacter_phage	1.6e-11	49.2
WP_000813254.1\|2145573_2145729_-	type I toxin-antitoxin system toxin HokD	A0A0U2QV81	Escherichia_phage	1.5e-17	96.1
WP_000150294.1\|2145966_2146632_-	epoxyqueuosine reductase QueH	NA	NA	NA	NA
WP_001151224.1\|2146806_2147232_-	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	1.3e-63	94.0
WP_096488174.1\|2147272_2148343_-	phage replisome organizer	A0A088CD36	Shigella_phage	1.9e-63	65.2
WP_000693867.1\|2148414_2148840_-	Rha family transcriptional regulator	NA	NA	NA	NA
WP_000747951.1\|2148823_2149066_-	hypothetical protein	H9C161	Pectobacterium_phage	4.8e-07	55.8
WP_001397087.1\|2149457_2149796_+	peptidase S24-like family protein	H9C160	Pectobacterium_phage	2.5e-06	30.7
WP_000379575.1\|2150088_2150244_+	DUF1391 family protein	M4QQ57	Salicola_phage	3.0e-07	53.2
WP_001171946.1\|2150403_2150622_+	hypothetical protein	NA	NA	NA	NA
WP_000394536.1\|2150644_2150974_+	hypothetical protein	NA	NA	NA	NA
WP_001317923.1\|2150942_2151380_-	hypothetical protein	NA	NA	NA	NA
WP_000560212.1\|2151784_2152006_+	cell division protein FtsZ	A0A0U2RTC4	Escherichia_phage	4.3e-31	82.2
WP_021525674.1\|2152129_2154601_+	exonuclease	K7PLW7	Enterobacteria_phage	3.8e-59	60.9
WP_000096344.1\|2154659_2154863_+	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_000533615.1\|2154862_2155888_+\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	3.4e-102	57.9
WP_001300801.1\|2156123_2156921_+	DgsA anti-repressor MtfA	NA	NA	NA	NA
WP_000480162.1\|2157258_2158521_+\|integrase	tyrosine-type recombinase/integrase	A0A1B0VMI6	Pseudomonas_phage	2.6e-72	38.8
2160324:2160338	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2367164 : 2376605

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001292774.1\|2367164_2368301_+	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	1.1e-162	97.7
WP_001317947.1\|2368297_2370298_+	SWIM zinc finger family protein	Q9EYF6	Enterobacteria_phage	0.0e+00	96.1
WP_001295429.1\|2370422_2370884_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	1.9e-76	100.0
WP_000950409.1\|2370923_2371394_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	5.2e-82	100.0
WP_000598641.1\|2371440_2372160_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001295431.1\|2372156_2373842_-	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
WP_001240422.1\|2374063_2374795_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	6.3e-111	99.0
WP_001216963.1\|2374854_2374962_+	protein YohO	NA	NA	NA	NA
WP_000783120.1\|2374942_2375674_-	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_000569336.1\|2375678_2376605_-	glycine betaine ABC transporter ATP binding protein YehX	G3M9Y6	Bacillus_virus	4.8e-23	30.8

DBSCAN-SWA_7

2955285 : 2962425

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001272914.1\|2955285_2957847_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	7.8e-31	20.7
WP_001141285.1\|2957952_2958609_+	protein-serine/threonine phosphatase	A0A077SLQ6	Escherichia_phage	4.3e-50	46.1
WP_001318002.1\|2958659_2959427_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	7.4e-70	57.4
WP_000848000.1\|2959622_2960531_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	1.5e-117	76.5
WP_000590398.1\|2960527_2961790_+	3-oxo-tetronate kinase	A0A077SLJ7	Escherichia_phage	1.3e-135	61.4
WP_001278992.1\|2961786_2962425_+	aldolase	A0A077SK32	Escherichia_phage	1.8e-82	74.5

DBSCAN-SWA_8

3204040 : 3269488

Stx2-converting_phage(35.71%)

transposase,tRNA,integrase,protease

attL 3204910:3204927|attR 3262886:3262903

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001318028.1\|3204040_3204799_+\|protease	metalloprotease LoiP	NA	NA	NA	NA
WP_000105566.1\|3204889_3205810_-	agmatinase	NA	NA	NA	NA
3204910:3204927	attL	NA	NA	NA	NA
WP_000715526.1\|3205945_3206677_-	hypothetical protein	NA	NA	NA	NA
WP_001295380.1\|3206822_3208799_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA
WP_001297406.1\|3208807_3208939_-	acid stress response protein YqgB	NA	NA	NA	NA
WP_001331575.1\|3209074_3209290_+	hypothetical protein	NA	NA	NA	NA
WP_001062128.1\|3209593_3210748_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	4.0e-128	63.2
WP_001696135.1\|3211184_3212579_+	galactose/proton symporter	NA	NA	NA	NA
WP_001696137.1\|3212655_3213153_+\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA
WP_001305312.1\|3213247_3213955_+	deoxyribonuclease I	NA	NA	NA	NA
WP_001300912.1\|3214034_3214766_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_000593258.1\|3214778_3215729_+	glutathione synthase	NA	NA	NA	NA
WP_001318029.1\|3215837_3216401_+	YqgE/AlgH family protein	NA	NA	NA	NA
WP_000017111.1\|3216400_3216817_+	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_001696140.1\|3216990_3217971_-	type IV pilus twitching motility protein PilT	NA	NA	NA	NA
WP_000997795.1\|3217988_3218693_+	pyridoxal phosphate homeostasis protein	NA	NA	NA	NA
WP_001094831.1\|3218710_3219277_+	osmotic shock tolerance protein YggT	NA	NA	NA	NA
WP_001277194.1\|3219273_3219564_+	YggU family protein	NA	NA	NA	NA
WP_001174747.1\|3219571_3220165_+	XTP/dITP diphosphatase	NA	NA	NA	NA
WP_000239950.1\|3220157_3221294_+	radical SAM family heme chaperone HemW	NA	NA	NA	NA
WP_000784004.1\|3221609_3222596_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA
WP_000577036.1\|3222640_3223144_+	TRAP transporter small permease	NA	NA	NA	NA
WP_000378929.1\|3223143_3224445_+	TRAP transporter large permease subunit	NA	NA	NA	NA
WP_000745229.1\|3224500_3225508_-	DUF1202 family protein	NA	NA	NA	NA
WP_000394103.1\|3225624_3226671_-	L-asparaginase 2	NA	NA	NA	NA
WP_000984796.1\|3226846_3227566_-	DUF2884 domain-containing protein	NA	NA	NA	NA
WP_001107566.1\|3227749_3228076_-	YggL family protein	NA	NA	NA	NA
WP_000786911.1\|3228075_3228795_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_001318031.1\|3228955_3230008_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_000091700.1\|3230035_3230311_+	oxidative damage protection protein	NA	NA	NA	NA
WP_000760323.1\|3230375_3231455_+	membrane-bound lytic murein transglycosylase MltC	NA	NA	NA	NA
WP_001298251.1\|3231656_3232913_+	nucleoside permease NupG	NA	NA	NA	NA
WP_001318032.1\|3232958_3235094_-	ornithine decarboxylase	NA	NA	NA	NA
WP_000234526.1\|3235485_3236193_+	DUF554 domain-containing protein	NA	NA	NA	NA
WP_001218801.1\|3236571_3237834_+\|integrase	integrase arm-type DNA-binding domain-containing protein	A0A1B0VMI6	Pseudomonas_phage	2.0e-80	42.8
WP_000065819.1\|3238195_3238360_-	hypothetical protein	NA	NA	NA	NA
WP_000544016.1\|3238696_3240253_+	L-lactate permease	NA	NA	NA	NA
WP_001102089.1\|3240302_3241022_+	(Fe-S)-binding protein	NA	NA	NA	NA
WP_000054154.1\|3241033_3242449_+	iron-sulfur cluster-binding protein	NA	NA	NA	NA
WP_000431526.1\|3242453_3243152_+	lactate utilization protein C	NA	NA	NA	NA
WP_000058875.1\|3243556_3246811_-	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	2.3e-48	27.4
WP_000535329.1\|3246905_3248210_-	restriction endonuclease subunit S	A0A1V0S9X4	Catovirus	2.9e-05	31.9
WP_000101224.1\|3248199_3249819_-	type I restriction-modification system subunit M	A0A2H4UVW8	Bodo_saltans_virus	5.0e-07	21.9
WP_001260389.1\|3250155_3250794_-	hypothetical protein	NA	NA	NA	NA
WP_032148757.1\|3250882_3251374_-	hypothetical protein	NA	NA	NA	NA
WP_000952905.1\|3251502_3252750_-	two-component system response regulator PgtA	NA	NA	NA	NA
WP_000790444.1\|3252739_3254749_-	two-component system sensor histidine kinase PgtB	NA	NA	NA	NA
WP_001317576.1\|3254745_3255963_-	phosphoglycerate transport regulator PgtC	NA	NA	NA	NA
WP_089541817.1\|3256265_3257494_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	2.7e-170	95.7
WP_000948757.1\|3257697_3259062_+	phosphoglycerate transporter PgtP	NA	NA	NA	NA
WP_000993926.1\|3259353_3260004_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	3.4e-15	42.7
WP_000623562.1\|3260003_3260351_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	4.4e-46	75.7
WP_001254932.1\|3262337_3263489_+\|transposase	IS30-like element IS30 family transposase	W5R8L2	Staphylococcus_phage	2.0e-42	35.6
3262886:3262903	attR	NA	NA	NA	NA
WP_000099202.1\|3264002_3265541_-\|transposase	IS66-like element ISEc22 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.3e-294	99.4
WP_000612626.1\|3265589_3265937_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0
WP_000839181.1\|3265933_3266338_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	1.1e-69	99.3
WP_000177057.1\|3266948_3267206_+	hypothetical protein	NA	NA	NA	NA
WP_000175457.1\|3267763_3268531_-	Fe(3+) dicitrate ABC transporter ATP-binding protein FecE	G3M9Y6	Bacillus_virus	6.4e-13	24.8
WP_000684856.1\|3268531_3269488_-	Fe(3+) dicitrate ABC transporter permease subunit FecD	A0A2H4IY97	uncultured_Caudovirales_phage	1.1e-17	26.1

DBSCAN-SWA_9

3276319 : 3285245

Stx2-converting_phage(66.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001317570.1\|3276319_3279817_-	autotransporter outer membrane beta-barrel domain-containing protein	A0A2L1IV18	Escherichia_phage	3.5e-98	34.8
WP_000422709.1\|3282029_3282455_+	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	3.4e-48	97.9
WP_000624717.1\|3282451_3282802_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	1.2e-40	66.4
WP_001593684.1\|3282832_3284425_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.9e-181	63.4
WP_000612556.1\|3284520_3284868_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.8e-61	99.1
WP_001171523.1\|3284864_3285245_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	7.1e-66	99.2

DBSCAN-SWA_10

4531337 : 4578102

Enterobacteria_phage(50.91%)

tRNA,tail,lysis,terminase,integrase,protease,holin,portal

attL 4528482:4528496|attR 4583908:4583922

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4528482:4528496	attL	NA	NA	NA	NA
WP_000390071.1\|4531337_4531511_+	hypothetical protein	K7PJQ2	Enterobacteria_phage	4.9e-22	96.5
WP_001093916.1\|4531558_4531840_-	pyocin activator PrtN family protein	K7PGU0	Enterobacteria_phage	2.8e-43	96.8
WP_001061340.1\|4531876_4532449_-	3'-5' exoribonuclease	K7PLW7	Enterobacteria_phage	1.9e-107	97.4
WP_000208054.1\|4532448_4533015_-	DUF551 domain-containing protein	G9L6G3	Escherichia_phage	3.1e-97	93.0
WP_001014286.1\|4533017_4533206_-	hypothetical protein	G9L660	Escherichia_phage	2.2e-23	92.1
WP_096488191.1\|4533207_4533726_-	ead/Ea22-like family protein	A0A222YWM9	Escherichia_phage	7.1e-32	64.7
WP_061336294.1\|4533722_4534208_-	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	4.4e-68	77.1
WP_001242737.1\|4534204_4534555_-	hypothetical protein	A0A0P0ZBF8	Stx2-converting_phage	4.3e-57	96.6
WP_000008216.1\|4534545_4535082_-	5'-deoxynucleotidase	U5P0T3	Shigella_phage	9.7e-101	99.4
WP_000081297.1\|4535209_4536034_-	YfdQ family protein	Q8SBF9	Shigella_phage	4.6e-150	99.6
WP_000135680.1\|4536099_4536462_-	hypothetical protein	Q8SBF8	Shigella_phage	8.6e-61	100.0
WP_000917896.1\|4537062_4537359_-	hypothetical protein	Q8SBF7	Shigella_phage	1.2e-52	100.0
WP_000853321.1\|4537693_4538380_-	helix-turn-helix transcriptional regulator	A0A0N7C1P9	Escherichia_phage	2.3e-38	41.6
WP_000187186.1\|4538517_4538766_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000515872.1\|4538788_4539346_+	hypothetical protein	S5FXP0	Shigella_phage	3.5e-93	93.5
WP_001250270.1\|4539521_4539734_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	5.4e-15	68.5
WP_000054954.1\|4539690_4540683_+	hypothetical protein	U5P0A0	Shigella_phage	1.1e-92	96.4
WP_072178178.1\|4540679_4541174_+	PerC family transcriptional regulator	K7PJR0	Enterobacteria_phage	4.3e-87	98.8
WP_001318184.1\|4541173_4541827_+	phage N-6-adenine-methyltransferase	A5LH72	Enterobacteria_phage	3.6e-126	98.6
WP_000210164.1\|4541823_4542150_+	LexA family transcriptional regulator	A0A0N7KZF7	Stx2-converting_phage	9.2e-54	100.0
WP_000767113.1\|4542146_4542536_+	RusA family crossover junction endodeoxyribonuclease	A0A0P0ZD39	Stx2-converting_phage	7.1e-69	100.0
WP_001061438.1\|4542555_4543365_+	KilA-N domain-containing protein	A5LH75	Enterobacteria_phage	8.2e-152	100.0
WP_021038222.1\|4543372_4544362_+	DUF968 domain-containing protein	U5P0K4	Shigella_phage	8.9e-193	98.5
WP_001204822.1\|4544379_4544751_+	antitermination protein Q	Q777W5	Enterobacteria_phage	1.7e-59	85.4
WP_000489186.1\|4545064_4545472_+	hypothetical protein	A0A0U2KD34	Escherichia_phage	1.1e-43	63.2
WP_001318187.1\|4545507_4546239_+	pertussis toxin subunit ArtA	A0A0U2KD26	Escherichia_phage	5.2e-97	74.4
WP_024186198.1\|4546788_4547004_+\|holin	class II holin family protein	M1FN85	Enterobacteria_phage	2.2e-32	94.4
WP_000193274.1\|4547008_4547359_+	YdfR family protein	K7PGU6	Enterobacteria_phage	2.9e-37	95.2
WP_061336154.1\|4547422_4547956_+	lysozyme	K7PLY1	Enterobacteria_phage	1.1e-99	96.0
WP_001300226.1\|4547952_4548420_+\|lysis	lysis protein	K7PH77	Enterobacteria_phage	2.9e-77	100.0
WP_001139681.1\|4548407_4548560_+	hypothetical protein	K7PKL2	Enterobacteria_phage	4.7e-21	96.0
WP_000349509.1\|4549234_4549726_+	DUF1441 family protein	A0A291AWV8	Escherichia_phage	1.3e-72	87.2
WP_000934132.1\|4549725_4551828_+\|terminase	phage terminase large subunit family protein	A0A291AWY5	Escherichia_phage	0.0e+00	99.7
WP_061336311.1\|4551824_4552037_+	hypothetical protein	A5LH28	Enterobacteria_phage	2.1e-30	97.1
WP_001529531.1\|4552036_4553545_+\|portal	phage portal protein	K7PJP3	Enterobacteria_phage	2.3e-288	99.2
WP_001360054.1\|4553489_4555517_+\|protease	Clp protease ClpP	A5LH30	Enterobacteria_phage	0.0e+00	99.7
WP_001097050.1\|4555603_4555927_+	DUF2190 family protein	A0A291AWX2	Escherichia_phage	8.5e-52	100.0
WP_001283153.1\|4555919_4556195_+	DNA breaking-rejoining protein	K7PH43	Enterobacteria_phage	2.3e-45	100.0
WP_000677120.1\|4556206_4556797_+\|tail	phage tail protein	A5LH33	Enterobacteria_phage	7.2e-81	80.1
WP_001079411.1\|4556793_4557195_+\|tail	tail protein	A5LH34	Enterobacteria_phage	2.4e-72	98.5
WP_000211128.1\|4557205_4557949_+\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	1.6e-130	98.0
WP_096488195.1\|4558009_4558396_+\|tail	phage minor tail protein G	K7PLV8	Enterobacteria_phage	1.2e-65	99.2
WP_001161009.1\|4558404_4558734_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	7.6e-56	100.0
WP_023147899.1\|4558705_4561762_+\|tail	phage tail tape measure protein	A5LH38	Enterobacteria_phage	0.0e+00	97.6
WP_000447253.1\|4561761_4562091_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	1.7e-60	100.0
WP_001152393.1\|4562100_4562799_+\|tail	phage minor tail protein L	A5LH40	Enterobacteria_phage	9.5e-133	98.7
WP_000140719.1\|4562804_4563548_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	1.2e-149	97.6
WP_071779861.1\|4563484_4564117_+\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	3.2e-95	98.6
WP_096488192.1\|4564177_4567657_+	host specificity protein J	A5LH43	Enterobacteria_phage	0.0e+00	89.9
WP_001317546.1\|4567724_4568324_+	Ail/Lom family outer membrane beta-barrel protein	Q9EV15	Enterobacteria_phage	2.9e-98	90.5
WP_000741768.1\|4568388_4570767_+\|tail	prophage tail fiber N-terminal domain-containing protein	A0A1X7QGG5	Escherichia_phage	1.8e-170	69.7
WP_000654146.1\|4570766_4571048_+	hypothetical protein	A0A1X7QHA1	Escherichia_phage	5.3e-18	50.0
WP_000235969.1\|4571057_4572098_+\|tail	tail fiber domain-containing protein	A0A0E3M4A9	Enterobacteria_phage	6.6e-122	65.8
WP_024186159.1\|4572140_4572428_+	hypothetical protein	NA	NA	NA	NA
WP_001217539.1\|4572545_4572794_-	DinI-like family protein	A5LH55	Enterobacteria_phage	1.1e-38	100.0
WP_000332271.1\|4572855_4573953_-\|integrase	site-specific integrase	S5MDN5	Escherichia_phage	9.5e-212	99.7
WP_000543830.1\|4574041_4575079_+\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_000891406.1\|4575212_4575455_+	envelope stress response protein PspG	NA	NA	NA	NA
WP_000235522.1\|4575620_4576604_-	quinone oxidoreductase	NA	NA	NA	NA
WP_000918363.1\|4576686_4578102_+	replicative DNA helicase	O80281	Escherichia_phage	4.8e-200	78.3
4583908:4583922	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_AP017611

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1262 : 87199

Enterobacteria_phage(20.0%)

integrase,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001066953.1\|1262_2003_-\|integrase	site-specific integrase	I3WFA4	Macacine_betaherpesvirus	2.0e-24	57.6
WP_014640565.1\|2123_2312_-	hypothetical protein	NA	NA	NA	NA
WP_001312822.1\|2685_3588_-	antimicrobial resistance protein Mig-14	NA	NA	NA	NA
WP_000771475.1\|3656_4766_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_000280980.1\|5198_6152_-\|protease	omptin family outer membrane protease	NA	NA	NA	NA
WP_001312823.1\|7424_7583_-\|transposase	transposase	NA	NA	NA	NA
WP_172424395.1\|7766_8979_+\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	4.3e-165	97.3
WP_000450494.1\|12419_13613_-	GTP-binding protein	NA	NA	NA	NA
WP_000738422.1\|16698_16992_+	increased serum survival lipoprotein Iss	K7PL54	Enterobacteria_phage	5.9e-44	90.7
WP_001318220.1\|20139_21255_+	salmochelin biosynthesis C-glycosyltransferase IroB	NA	NA	NA	NA
WP_001111199.1\|21394_25054_+	salmochelin/enterobactin export ABC transporter IroC	W8CYL7	Bacillus_phage	1.2e-45	30.0
WP_000933675.1\|25157_26387_+	catecholate siderophore esterase IroD	NA	NA	NA	NA
WP_000271276.1\|26471_27428_+	catecholate siderophore esterase IroE	NA	NA	NA	NA
WP_001222186.1\|27472_29650_-	siderophore salmochelin receptor IroN	A0A0P0I887	Acinetobacter_phage	9.6e-06	31.8
WP_096488198.1\|30504_31539_-	3-deoxy-7-phosphoheptulonate synthase	A0A0B6VT43	Edwardsiella_phage	5.7e-73	42.6
WP_001311056.1\|32745_33228_-	hypothetical protein	NA	NA	NA	NA
WP_050439874.1\|34193_34418_-	hypothetical protein	NA	NA	NA	NA
WP_001172748.1\|34717_35107_-	cytochrome b562 family protein	NA	NA	NA	NA
WP_016242784.1\|35150_37358_-	catalase/peroxidase KatP	NA	NA	NA	NA
WP_096488199.1\|37570_38265_-\|transposase	IS1 family transposase	A0A0U2RK18	Escherichia_phage	4.3e-133	98.7
WP_024241464.1\|38329_38917_-	bfpT-regulated chaperone	NA	NA	NA	NA
WP_096488200.1\|39086_39728_+	DUF1076 domain-containing protein	B6ETE1	Enterobacteria_phage	4.3e-39	40.1
WP_000422741.1\|40644_41070_+	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	1.5e-48	99.0
WP_074514505.1\|41066_41417_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.4e-39	65.5
WP_071594104.1\|42819_46911_-	autotransporter outer membrane beta-barrel domain-containing protein	Q9LA58	Enterobacterial_phage	1.1e-297	44.0
WP_000124086.1\|47790_48156_+	hypothetical protein	NA	NA	NA	NA
WP_001180116.1\|49721_49937_-	hypothetical protein	NA	NA	NA	NA
WP_000356546.1\|49926_50172_-	hypothetical protein	NA	NA	NA	NA
WP_001181903.1\|50216_50540_-	hypothetical protein	A0A0K1LL53	Rhodobacter_phage	9.2e-14	46.1
WP_000220560.1\|50685_50967_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A2H4JBF4	uncultured_Caudovirales_phage	3.8e-24	62.4
WP_000121743.1\|50956_51208_-	plasmid stabilization protein	NA	NA	NA	NA
WP_001239324.1\|52260_53115_+	replication initiation protein	NA	NA	NA	NA
WP_021532249.1\|53139_53586_+	hypothetical protein	NA	NA	NA	NA
WP_096488222.1\|53722_54079_+	DNA distortion polypeptide 3	NA	NA	NA	NA
WP_058678168.1\|54130_54727_-	YcxB family protein	NA	NA	NA	NA
WP_001185480.1\|55161_55446_-	hypothetical protein	NA	NA	NA	NA
WP_000516402.1\|55545_56208_-	peptidyl-arginine deiminase	E5FFJ3	Burkholderia_phage	2.6e-07	25.2
WP_096488201.1\|56588_57233_+	recombinase family protein	A0A1V0E035	Clostridioides_phage	7.5e-07	28.3
WP_096488202.1\|57557_59300_-	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	9.4e-20	22.9
WP_096488203.1\|59302_60844_-	lasso peptide isopeptide bond-forming cyclase	NA	NA	NA	NA
WP_096488223.1\|60846_61473_-	lasso peptide biosynthesis B2 protein	NA	NA	NA	NA
WP_096488204.1\|61812_61989_+	lasso peptide microcin J25	NA	NA	NA	NA
WP_000124086.1\|64030_64396_+	hypothetical protein	NA	NA	NA	NA
WP_096488207.1\|66269_67807_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_000650705.1\|69024_69444_+	polymer-forming cytoskeletal protein	NA	NA	NA	NA
WP_071829867.1\|70129_70750_-	autotransporter outer membrane beta-barrel domain-containing protein	Q9LA58	Enterobacterial_phage	5.3e-42	42.2
WP_145955109.1\|71217_72446_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	2.8e-172	96.7
WP_112936990.1\|72495_73617_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	1.9e-42	35.6
WP_000124086.1\|83132_83498_+	hypothetical protein	NA	NA	NA	NA
WP_021533574.1\|84867_85149_-	hypothetical protein	NA	NA	NA	NA
WP_001620845.1\|85254_85530_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_001178089.1\|85529_85814_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_001067858.1\|86494_87199_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_AP017612

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CRISPR-Cas detection and classification

Crispr_ID: NZ_AP017612_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP017612_1

1593-1847

Orphan

Consensus_repeat	Method
GTATGCTGTCAGCGGT	PILER-CR

3 spacers

The CRISPR arrays of NZ_AP017612_1

>merge|NZ_AP017612|1|1593-1847|PILER-CR
GTATGCTGTCAGCGGTGTTTTATTGAGGAATTTTTGTTTGGATATGCTATCAGCGGTAATTAATGGCATATGTCAGACATTCGTATGCTGCCAGCGGTAATTTTGTTCTGGTTATACCCATACCGGTACACATTATTCATGCAATGTCTTAAGTATGCTGTCAGCGGTAAAAAAACGAGTAAAGTATGCTGTGAGCGGTGAGATAGACTCTCGATATGCTATCAGCGGTAGTTGATTGTGTATGCTGTCAGCGGT

>NZ_AP017612|1|1|1593-1847|PILER-CR
GTATGCTGTCAGCGGT	GTTTTATTGAGGAATTTTTGTTTGGATATGCTATCAGCGGTAATTAATGGCATATGTCAGACATTC
GTATGCTGCCAGCGGT	AATTTTGTTCTGGTTATACCCATACCGGTACACATTATTCATGCAATGTCTTAA
GTATGCTGTCAGCGGT	AAAAAAACGAGTAAAGTATGCTGTGAGCGGTGAGATAGACTCTCGATATGCTATCAGCGGTAGTTGATTGT
GTATGCTGTCAGCGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP017612.1\|WP_024180339.1\|100_1315_+\|RepB-family-plasmid-replication-initiator-protein	unknown	unknown	unknown
NZ_AP017612.1\|WP_089546095.1\|4279_4669_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017612.1\|WP_001229345.1\|1894_2107_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017612.1\|WP_000644408.1\|2106_2442_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017612.1\|WP_001265407.1\|2657_2933_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017612.1\|WP_162755224.1\|2988_3414_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|177336
NZ_AP017612.1\|WP_096488224.1\|7229_7430_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017612.1\|WP_032203371.1\|4689_5430_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017612.1\|WP_094276198.1\|6395_7226_-\|serine-protease	unknown	unknown	gnl\|CDD\|366488
NZ_AP017612.1\|WP_052904267.1\|5475_6300_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375832
NZ_AP017612.1\|WP_089546098.1\|3699_4116_-\|DUF2591-family-protein	unknown	unknown	gnl\|CDD\|378491

>NZ_AP017612.1|WP_024180339.1|100_1315_+|RepB-family-plasmid-replication-initiator-protein
MLPAVIDSLSTVRRMLPTVFGMLPAANQVCCQRLNDKGVHMSTKNKKGKNNKEVEDNLDNFEEGSLELYTGELVPNSNNTVQPIALMRLGLFVPTLKGTKYSKRNKPNEIDASKELVQLEVARSEGYSDIKITGPRLDMDHDFKTWVGVVRSLAEYGEPNGRVELSITKFAKFCGYPSSQIRKTLRDRLTNSLLKIMRTTLSFQRTYEEKNVDGSNKISLLMVHLINSVDYNEQKDTVVFYAEPKLAELYRFDHKVLLQLKVINKLPRKETAQALYTFIESLPTKPAPVSLARLRARLNLSSRNVSSQNQTIRNGLKALQDLGYLEYSEIKRGRSIYIQIHSRNPKLKVAPPKPEDIEPKKPDEKAGEIDAKQNIINKITELSQNLTPENIKMIEILSNSLKLL
>NZ_AP017612.1|WP_001229345.1|1894_2107_-|hypothetical-protein
MALTLAGLEIEKTSGYWRAKGFKQPGILERLEREDGYIVHQRREWRMYDPETGKLTTKAGTLWGLLKKIH
>NZ_AP017612.1|WP_000644408.1|2106_2442_-|hypothetical-protein
MKAIPFALLFLSSIVVADTTVYQCEMSVADVKNGALTDVIKAPYGAMVVDSGDQFYVVRDDRVLSSPYLTNRNGKLTGVGEDHFVYNKYKGFYGVHASQQSYLFDDCKEVG
>NZ_AP017612.1|WP_001265407.1|2657_2933_-|hypothetical-protein
MRVLVRIVTSTVYDVFPLFMVKADGLNDEETDALIQRILVEYTGHDADSVMVDDDGVCWHNGNCWYVEETQQISDEDAAHLERILSISTFE
>NZ_AP017612.1|WP_162755224.1|2988_3414_-|hypothetical-protein
MAAIKKLYDAANAALNVIDDEVSKGFPEPDWAHQLRNAIAEMNPPAPTTDETDWQRFIRMYAQEIGPTPTAEQAMLLKYFKEAGEDLPIDDSAYWFHCAWRKYDVIFTQGMGSKDMVVWHLLHIDTAVDRVIEQFFPKQED
>NZ_AP017612.1|WP_089546098.1|3699_4116_-|DUF2591-family-protein
MIATDFSKLSDFEINRRVCEALDMEEYFFIPDDEADFDSEIPTDERGPVWQTSKRDINGFRASNGNCFNPCNNPADAKPIIVENRIGIIPAPENGLWKAAHRKVGNDNTPYHMTQNVNPLRAAMIVFLMMKESESCTD
>NZ_AP017612.1|WP_089546095.1|4279_4669_-|hypothetical-protein
MLLIQPGFGLKIKKGHMFGERDSKRKILSIRLPFITIHWLNRESTDYWYKCARAAFNDPDWFIENHHAVRQAKRKANTTYMKAYQDAWEEHRGRYQKNIEKLESENMDLRRKLGEARRDIEAYKRLVSE
>NZ_AP017612.1|WP_032203371.1|4689_5430_-|hypothetical-protein
MKRKIEEPKTTLNKHGEKIQTHPAFGLVKTSRVSTTGIRLFDSELEHRDYIEIGVYEAELSLDNERTRPQRSSNRRPLVEIRLSQAQWAAMVSSFGVGEGVPCTISYKTIGDSIRVHDIAEQKSIRQKFNDQIKAATNSEIDRLNQQVSELGELVKKGRAGKRDLEELYRKLASAVANLPENLCFATELMQEQMDEIVSSGKAEIEAYVAGTVMRKGLAALGTESCINDDPTVSITKMESGKELLP
>NZ_AP017612.1|WP_052904267.1|5475_6300_-|hypothetical-protein
MPNHITNEIRVIGGTNKQRLDFIRAITNKKGLIDFNTICRRPKSIEMEENNHIRRMASAMAGETVYDYMFGELKTPEQVELAMRESGMTRKEIRKIKEQALMRLENYRRYGYYSWFDWSRANWGTKWNAYNIEMPVKRIPTRIKYGHNFRHTHVRAYAKRIYKKRLARHAATGGELVIRFETAWSMPKPIYQAMARKFPHLEFVIRYADEDFGNNCGFILLRNGKWEYDYIAPANNEQSSEEKIKWRKFAFELCCPGITPQEYGLNEEYEYAGY
>NZ_AP017612.1|WP_094276198.1|6395_7226_-|serine-protease
MKKRLSVIALAAICTMGIIGYDRVEPGFVGIKVNKVGEDKGIGEVVGVGHQWVGINTELYVFPTFKQMKIYDEPFTFQMSDGTAIGHKIGVTYLVNRDKVTTVFQTYRKGVDDITESDLRQKIADSLNRLASRMTTDSFIDGGKAQLLDNALKDIQKEMSPVGIEVLSLSWVGKPDYPKTVIESINAKVTANQRTLQRQQEVEQRKAEANMLREQANGEADAIRARAQAEADAIRLRGEALRQNPNVMELEAINKWNGQLPQYMTQGANTPFITVK
>NZ_AP017612.1|WP_096488224.1|7229_7430_-|hypothetical-protein
MIKIYLLAVATGLSVALIYGLLVPSLISAKSDLAVMLGVLVGFGAPVIGLIGGRKFINSLIKTKEK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_AP017612_1	1.2\|1691\|54\|NZ_AP017612\|PILER-CR	1691-1744	54	NZ_KY515225	Escherichia coli strain 244 plasmid AnCo2, complete sequence	18820-18873	0	1.0
NZ_AP017612_1	1.2\|1691\|54\|NZ_AP017612\|PILER-CR	1691-1744	54	NZ_CP050499	Escherichia coli strain RM13322 plasmid pRM13322, complete sequence	69808-69861	0	1.0
NZ_AP017612_1	1.2\|1691\|54\|NZ_AP017612\|PILER-CR	1691-1744	54	NZ_AP017612	Escherichia coli strain 20Ec-P-124 plasmid pMRY16-002_2, complete sequence	1691-1744	0	1.0
NZ_AP017612_1	1.2\|1691\|54\|NZ_AP017612\|PILER-CR	1691-1744	54	CP022461	Shigella sonnei strain 2015C-3807 plasmid unnamed2, complete sequence	21467-21520	0	1.0
NZ_AP017612_1	1.2\|1691\|54\|NZ_AP017612\|PILER-CR	1691-1744	54	NZ_CP024271	Escherichia coli strain F8111-1SC3 plasmid unnamed2	75091-75144	0	1.0
NZ_AP017612_1	1.2\|1691\|54\|NZ_AP017612\|PILER-CR	1691-1744	54	NZ_CP048306	Escherichia coli strain 9 plasmid p009_B, complete sequence	1471-1524	0	1.0
NZ_AP017612_1	1.2\|1691\|54\|NZ_AP017612\|PILER-CR	1691-1744	54	MK125034	Escherichia coli O25b:H4-ST131 plasmid p7.2.1, complete sequence	1691-1744	0	1.0
NZ_AP017612_1	1.2\|1691\|54\|NZ_AP017612\|PILER-CR	1691-1744	54	MK125035	Escherichia coli O25b:H4-ST131 plasmid pB20 clone ST131-Rx_O25b:fimH30, complete sequence	1691-1744	0	1.0
NZ_AP017612_1	1.2\|1691\|54\|NZ_AP017612\|PILER-CR	1691-1744	54	NZ_CP027358	Escherichia coli strain 2013C-4991 plasmid unnamed3, complete sequence	53856-53909	0	1.0
NZ_AP017612_1	1.2\|1691\|54\|NZ_AP017612\|PILER-CR	1691-1744	54	NZ_CP041423	Escherichia coli strain STEC409 plasmid pSTEC409_1, complete sequence	18343-18396	0	1.0
NZ_AP017612_1	1.2\|1691\|54\|NZ_AP017612\|PILER-CR	1691-1744	54	CP053753	Shigella sonnei strain 506 plasmid pMHMC-002, complete sequence	75450-75503	0	1.0
NZ_AP017612_1	1.2\|1691\|54\|NZ_AP017612\|PILER-CR	1691-1744	54	NC_018651	Escherichia coli O104:H4 str. 2009EL-2050 plasmid p09EL50, complete sequence	62156-62209	0	1.0
NZ_AP017612_1	1.2\|1691\|54\|NZ_AP017612\|PILER-CR	1691-1744	54	NZ_CP024264	Escherichia coli O169:H41 strain F6326-C1 plasmid unnamed1	36034-36087	0	1.0
NZ_AP017612_1	1.2\|1691\|54\|NZ_AP017612\|PILER-CR	1691-1744	54	NZ_CP010153	Escherichia coli strain D9 plasmid A, complete genome	71601-71654	0	1.0
NZ_AP017612_1	1.2\|1691\|54\|NZ_AP017612\|PILER-CR	1691-1744	54	NZ_CP027369	Escherichia coli strain 2014C-3307 plasmid unnamed1, complete sequence	83050-83103	0	1.0
NZ_AP017612_1	1.2\|1691\|54\|NZ_AP017612\|PILER-CR	1691-1744	54	NZ_CP010144	Escherichia coli strain D4 plasmid A, complete genome	71679-71732	0	1.0
NZ_AP017612_1	1.2\|1691\|54\|NZ_AP017612\|PILER-CR	1691-1744	54	NZ_CP019027	Escherichia coli strain Ecol_881 plasmid pEC881_2, complete sequence	83835-83888	0	1.0
NZ_AP017612_1	1.2\|1691\|54\|NZ_AP017612\|PILER-CR	1691-1744	54	NZ_CP019002	Escherichia coli strain Ecol_AZ155 plasmid pECAZ155_2, complete sequence	94582-94635	0	1.0
NZ_AP017612_1	1.2\|1691\|54\|NZ_AP017612\|PILER-CR	1691-1744	54	CP045933	Shigella sonnei strain AUSMDU00010534 plasmid pAUSMDU00010534_01, complete sequence	1471-1524	0	1.0
NZ_AP017612_1	1.2\|1691\|54\|NZ_AP017612\|PILER-CR	1691-1744	54	NZ_CP041451	Escherichia coli strain YPE3 plasmid pYPE3-114k, complete sequence	1471-1524	0	1.0
NZ_AP017612_1	1.2\|1691\|54\|NZ_AP017612\|PILER-CR	1691-1744	54	NZ_CP034165	Escherichia albertii strain 2014C-4015 plasmid p2014C-4015-1, complete sequence	37107-37160	0	1.0
NZ_AP017612_1	1.2\|1691\|54\|NZ_AP017612\|PILER-CR	1691-1744	54	NZ_CP022085	Escherichia coli O104:H4 strain FDAARGOS_348 plasmid unnamed1, complete sequence	96917-96970	0	1.0
NZ_AP017612_1	1.2\|1691\|54\|NZ_AP017612\|PILER-CR	1691-1744	54	NZ_CP014490	Escherichia coli strain G749 plasmid pG749_2, complete sequence	85747-85800	0	1.0
NZ_AP017612_1	1.2\|1691\|54\|NZ_AP017612\|PILER-CR	1691-1744	54	NC_023916	Escherichia coli H89 plasmid pECOH89, complete sequence	1691-1744	0	1.0
NZ_AP017612_1	1.2\|1691\|54\|NZ_AP017612\|PILER-CR	1691-1744	54	NZ_LR213459	Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 2	1471-1524	0	1.0
NZ_AP017612_1	1.2\|1691\|54\|NZ_AP017612\|PILER-CR	1691-1744	54	NZ_KY515224	Escherichia coli strain 243 plasmid AnCo1, complete sequence	106949-107002	0	1.0
NZ_AP017612_1	1.2\|1691\|54\|NZ_AP017612\|PILER-CR	1691-1744	54	MF554642	uncultured bacterium clone AA-105 plasmid pTIC, complete sequence	31093-31146	0	1.0
NZ_AP017612_1	1.2\|1691\|54\|NZ_AP017612\|PILER-CR	1691-1744	54	CP054387	Escherichia phage CMS-2020a, complete genome	1471-1524	0	1.0
NZ_AP017612_1	1.2\|1691\|54\|NZ_AP017612\|PILER-CR	1691-1744	54	NZ_CP025883	Escherichia coli strain 503440 plasmid p503440_100, complete sequence	64261-64314	1	0.981
NZ_AP017612_1	1.2\|1691\|54\|NZ_AP017612\|PILER-CR	1691-1744	54	NZ_CP025894	Escherichia coli strain 503025 plasmid p503025_100, complete sequence	86946-86999	1	0.981
NZ_AP017612_1	1.2\|1691\|54\|NZ_AP017612\|PILER-CR	1691-1744	54	NZ_CP025868	Escherichia coli strain 504211 plasmid p504211_100, complete sequence	28914-28967	1	0.981
NZ_AP017612_1	1.2\|1691\|54\|NZ_AP017612\|PILER-CR	1691-1744	54	NZ_CP025870	Escherichia coli strain 503829 plasmid p503829_100, complete sequence	633-686	1	0.981
NZ_AP017612_1	1.2\|1691\|54\|NZ_AP017612\|PILER-CR	1691-1744	54	NZ_CP019283	Escherichia coli strain 13P484A plasmid p13P484A-3, complete sequence	70427-70480	1	0.981
NZ_AP017612_1	1.2\|1691\|54\|NZ_AP017612\|PILER-CR	1691-1744	54	NZ_CP045191	Escherichia coli strain NT1F31 plasmid pNT1F31-113kb, complete sequence	1471-1524	1	0.981
NZ_AP017612_1	1.2\|1691\|54\|NZ_AP017612\|PILER-CR	1691-1744	54	NZ_CP041426	Escherichia coli strain STEC388 plasmid pSTEC388_1, complete sequence	82641-82694	1	0.981
NZ_AP017612_1	1.2\|1691\|54\|NZ_AP017612\|PILER-CR	1691-1744	54	CP025897	Escherichia coli strain 500465 plasmid p500465_152, complete sequence	137199-137252	1	0.981
NZ_AP017612_1	1.2\|1691\|54\|NZ_AP017612\|PILER-CR	1691-1744	54	NZ_CP022167	Escherichia coli strain M160133 plasmid pM160133_p3, complete sequence	1471-1524	1	0.981
NZ_AP017612_1	1.2\|1691\|54\|NZ_AP017612\|PILER-CR	1691-1744	54	NZ_CP015915	Escherichia coli strain 210205630 isolate 210205630 plasmid pSLy3, complete sequence	75929-75982	1	0.981
NZ_AP017612_1	1.2\|1691\|54\|NZ_AP017612\|PILER-CR	1691-1744	54	NZ_CP012114	Escherichia coli strain PSUO78 plasmid pPSUO78_2, complete sequence	63380-63433	1	0.981
NZ_AP017612_1	1.2\|1691\|54\|NZ_AP017612\|PILER-CR	1691-1744	54	NZ_CP023851	Escherichia coli strain 4/0 plasmid p4_0.2, complete sequence	2682-2735	2	0.963
NZ_AP017612_1	1.2\|1691\|54\|NZ_AP017612\|PILER-CR	1691-1744	54	NZ_CP045278	Escherichia coli strain LAU-OXA plasmid pLAU-OXA1, complete sequence	1471-1524	2	0.963
NZ_AP017612_1	1.2\|1691\|54\|NZ_AP017612\|PILER-CR	1691-1744	54	NZ_CP019013	Escherichia coli strain Ecol_AZ162 plasmid pECAZ162_2, complete sequence	7833-7886	2	0.963
NZ_AP017612_1	1.2\|1691\|54\|NZ_AP017612\|PILER-CR	1691-1744	54	CP025888	Escherichia coli strain 503046 plasmid p503046_111, complete sequence	1472-1525	2	0.963
NZ_AP017612_1	1.2\|1691\|54\|NZ_AP017612\|PILER-CR	1691-1744	54	NZ_CP031136	Escherichia coli strain CFSAN064035 plasmid pGMI17-003_2, complete sequence	104450-104503	2	0.963
NZ_AP017612_1	1.2\|1691\|54\|NZ_AP017612\|PILER-CR	1691-1744	54	CP053388	Escherichia phage CMS-2020a, complete sequence	1471-1524	2	0.963
NZ_AP017612_1	1.1\|1609\|66\|NZ_AP017612\|PILER-CR	1609-1674	66	NZ_CP050499	Escherichia coli strain RM13322 plasmid pRM13322, complete sequence	69878-69943	6	0.909
NZ_AP017612_1	1.1\|1609\|66\|NZ_AP017612\|PILER-CR	1609-1674	66	NZ_AP017612	Escherichia coli strain 20Ec-P-124 plasmid pMRY16-002_2, complete sequence	1609-1674	6	0.909
NZ_AP017612_1	1.1\|1609\|66\|NZ_AP017612\|PILER-CR	1609-1674	66	CP022461	Shigella sonnei strain 2015C-3807 plasmid unnamed2, complete sequence	21385-21450	6	0.909
NZ_AP017612_1	1.1\|1609\|66\|NZ_AP017612\|PILER-CR	1609-1674	66	CP053753	Shigella sonnei strain 506 plasmid pMHMC-002, complete sequence	75520-75585	6	0.909
NZ_AP017612_1	1.1\|1609\|66\|NZ_AP017612\|PILER-CR	1609-1674	66	NC_018651	Escherichia coli O104:H4 str. 2009EL-2050 plasmid p09EL50, complete sequence	62074-62139	6	0.909
NZ_AP017612_1	1.1\|1609\|66\|NZ_AP017612\|PILER-CR	1609-1674	66	CP045933	Shigella sonnei strain AUSMDU00010534 plasmid pAUSMDU00010534_01, complete sequence	1389-1454	6	0.909
NZ_AP017612_1	1.1\|1609\|66\|NZ_AP017612\|PILER-CR	1609-1674	66	NZ_CP022085	Escherichia coli O104:H4 strain FDAARGOS_348 plasmid unnamed1, complete sequence	96835-96900	6	0.909
NZ_AP017612_1	1.1\|1609\|66\|NZ_AP017612\|PILER-CR	1609-1674	66	NZ_LR213459	Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 2	1389-1454	6	0.909
NZ_AP017612_1	1.1\|1609\|66\|NZ_AP017612\|PILER-CR	1609-1674	66	CP054387	Escherichia phage CMS-2020a, complete genome	1389-1454	6	0.909
NZ_AP017612_1	1.1\|1609\|66\|NZ_AP017612\|PILER-CR	1609-1674	66	NZ_CP048306	Escherichia coli strain 9 plasmid p009_B, complete sequence	1389-1454	6	0.909
NZ_AP017612_1	1.1\|1609\|66\|NZ_AP017612\|PILER-CR	1609-1674	66	NZ_CP019283	Escherichia coli strain 13P484A plasmid p13P484A-3, complete sequence	70345-70410	6	0.909
NZ_AP017612_1	1.1\|1609\|66\|NZ_AP017612\|PILER-CR	1609-1674	66	NZ_CP019002	Escherichia coli strain Ecol_AZ155 plasmid pECAZ155_2, complete sequence	94500-94565	6	0.909
NZ_AP017612_1	1.1\|1609\|66\|NZ_AP017612\|PILER-CR	1609-1674	66	NZ_CP041451	Escherichia coli strain YPE3 plasmid pYPE3-114k, complete sequence	1389-1454	6	0.909
NZ_AP017612_1	1.1\|1609\|66\|NZ_AP017612\|PILER-CR	1609-1674	66	MF554642	uncultured bacterium clone AA-105 plasmid pTIC, complete sequence	31011-31076	6	0.909
NZ_AP017612_1	1.1\|1609\|66\|NZ_AP017612\|PILER-CR	1609-1674	66	NZ_CP045278	Escherichia coli strain LAU-OXA plasmid pLAU-OXA1, complete sequence	1389-1454	7	0.894
NZ_AP017612_1	1.1\|1609\|66\|NZ_AP017612\|PILER-CR	1609-1674	66	CP025888	Escherichia coli strain 503046 plasmid p503046_111, complete sequence	1390-1455	7	0.894
NZ_AP017612_1	1.1\|1609\|66\|NZ_AP017612\|PILER-CR	1609-1674	66	CP053388	Escherichia phage CMS-2020a, complete sequence	1389-1454	7	0.894
NZ_AP017612_1	1.1\|1609\|66\|NZ_AP017612\|PILER-CR	1609-1674	66	NZ_CP025883	Escherichia coli strain 503440 plasmid p503440_100, complete sequence	64331-64396	7	0.894
NZ_AP017612_1	1.1\|1609\|66\|NZ_AP017612\|PILER-CR	1609-1674	66	NZ_CP025894	Escherichia coli strain 503025 plasmid p503025_100, complete sequence	86864-86929	7	0.894
NZ_AP017612_1	1.1\|1609\|66\|NZ_AP017612\|PILER-CR	1609-1674	66	NZ_CP025868	Escherichia coli strain 504211 plasmid p504211_100, complete sequence	28832-28897	7	0.894
NZ_AP017612_1	1.1\|1609\|66\|NZ_AP017612\|PILER-CR	1609-1674	66	NZ_KY515225	Escherichia coli strain 244 plasmid AnCo2, complete sequence	18890-18955	7	0.894
NZ_AP017612_1	1.1\|1609\|66\|NZ_AP017612\|PILER-CR	1609-1674	66	NZ_CP024271	Escherichia coli strain F8111-1SC3 plasmid unnamed2	75161-75226	7	0.894
NZ_AP017612_1	1.1\|1609\|66\|NZ_AP017612\|PILER-CR	1609-1674	66	NZ_CP025870	Escherichia coli strain 503829 plasmid p503829_100, complete sequence	551-616	7	0.894
NZ_AP017612_1	1.1\|1609\|66\|NZ_AP017612\|PILER-CR	1609-1674	66	NZ_CP045191	Escherichia coli strain NT1F31 plasmid pNT1F31-113kb, complete sequence	1389-1454	7	0.894
NZ_AP017612_1	1.1\|1609\|66\|NZ_AP017612\|PILER-CR	1609-1674	66	NZ_CP041426	Escherichia coli strain STEC388 plasmid pSTEC388_1, complete sequence	82559-82624	7	0.894
NZ_AP017612_1	1.1\|1609\|66\|NZ_AP017612\|PILER-CR	1609-1674	66	MK125034	Escherichia coli O25b:H4-ST131 plasmid p7.2.1, complete sequence	1609-1674	7	0.894
NZ_AP017612_1	1.1\|1609\|66\|NZ_AP017612\|PILER-CR	1609-1674	66	MK125035	Escherichia coli O25b:H4-ST131 plasmid pB20 clone ST131-Rx_O25b:fimH30, complete sequence	1609-1674	7	0.894
NZ_AP017612_1	1.1\|1609\|66\|NZ_AP017612\|PILER-CR	1609-1674	66	NZ_CP027358	Escherichia coli strain 2013C-4991 plasmid unnamed3, complete sequence	53774-53839	7	0.894
NZ_AP017612_1	1.1\|1609\|66\|NZ_AP017612\|PILER-CR	1609-1674	66	NZ_CP041423	Escherichia coli strain STEC409 plasmid pSTEC409_1, complete sequence	18413-18478	7	0.894
NZ_AP017612_1	1.1\|1609\|66\|NZ_AP017612\|PILER-CR	1609-1674	66	NZ_CP024264	Escherichia coli O169:H41 strain F6326-C1 plasmid unnamed1	36104-36169	7	0.894
NZ_AP017612_1	1.1\|1609\|66\|NZ_AP017612\|PILER-CR	1609-1674	66	NZ_CP010153	Escherichia coli strain D9 plasmid A, complete genome	71519-71584	7	0.894
NZ_AP017612_1	1.1\|1609\|66\|NZ_AP017612\|PILER-CR	1609-1674	66	CP025897	Escherichia coli strain 500465 plasmid p500465_152, complete sequence	137269-137334	7	0.894
NZ_AP017612_1	1.1\|1609\|66\|NZ_AP017612\|PILER-CR	1609-1674	66	NZ_CP022167	Escherichia coli strain M160133 plasmid pM160133_p3, complete sequence	1389-1454	7	0.894
NZ_AP017612_1	1.1\|1609\|66\|NZ_AP017612\|PILER-CR	1609-1674	66	NZ_CP027369	Escherichia coli strain 2014C-3307 plasmid unnamed1, complete sequence	82968-83033	7	0.894
NZ_AP017612_1	1.1\|1609\|66\|NZ_AP017612\|PILER-CR	1609-1674	66	NZ_CP010144	Escherichia coli strain D4 plasmid A, complete genome	71597-71662	7	0.894
NZ_AP017612_1	1.1\|1609\|66\|NZ_AP017612\|PILER-CR	1609-1674	66	NZ_CP019027	Escherichia coli strain Ecol_881 plasmid pEC881_2, complete sequence	83753-83818	7	0.894
NZ_AP017612_1	1.1\|1609\|66\|NZ_AP017612\|PILER-CR	1609-1674	66	NZ_CP015915	Escherichia coli strain 210205630 isolate 210205630 plasmid pSLy3, complete sequence	75999-76064	7	0.894
NZ_AP017612_1	1.1\|1609\|66\|NZ_AP017612\|PILER-CR	1609-1674	66	NZ_CP034165	Escherichia albertii strain 2014C-4015 plasmid p2014C-4015-1, complete sequence	37177-37242	7	0.894
NZ_AP017612_1	1.1\|1609\|66\|NZ_AP017612\|PILER-CR	1609-1674	66	NZ_CP014490	Escherichia coli strain G749 plasmid pG749_2, complete sequence	85665-85730	7	0.894
NZ_AP017612_1	1.1\|1609\|66\|NZ_AP017612\|PILER-CR	1609-1674	66	NC_023916	Escherichia coli H89 plasmid pECOH89, complete sequence	1609-1674	7	0.894
NZ_AP017612_1	1.1\|1609\|66\|NZ_AP017612\|PILER-CR	1609-1674	66	NZ_KY515224	Escherichia coli strain 243 plasmid AnCo1, complete sequence	107019-107084	7	0.894
NZ_AP017612_1	1.1\|1609\|66\|NZ_AP017612\|PILER-CR	1609-1674	66	NZ_CP023851	Escherichia coli strain 4/0 plasmid p4_0.2, complete sequence	2600-2665	8	0.879
NZ_AP017612_1	1.1\|1609\|66\|NZ_AP017612\|PILER-CR	1609-1674	66	NZ_CP019013	Escherichia coli strain Ecol_AZ162 plasmid pECAZ162_2, complete sequence	7903-7968	8	0.879
NZ_AP017612_1	1.1\|1609\|66\|NZ_AP017612\|PILER-CR	1609-1674	66	NZ_CP031136	Escherichia coli strain CFSAN064035 plasmid pGMI17-003_2, complete sequence	104520-104585	8	0.879
NZ_AP017612_1	1.1\|1609\|66\|NZ_AP017612\|PILER-CR	1609-1674	66	NZ_CP012114	Escherichia coli strain PSUO78 plasmid pPSUO78_2, complete sequence	63450-63515	8	0.879
NZ_AP017612_1	1.3\|1761\|71\|NZ_AP017612\|PILER-CR	1761-1831	71	NZ_AP017612	Escherichia coli strain 20Ec-P-124 plasmid pMRY16-002_2, complete sequence	1761-1831	11	0.845
NZ_AP017612_1	1.3\|1761\|71\|NZ_AP017612\|PILER-CR	1761-1831	71	NZ_CP019027	Escherichia coli strain Ecol_881 plasmid pEC881_2, complete sequence	83906-83976	11	0.845
NZ_AP017612_1	1.3\|1761\|71\|NZ_AP017612\|PILER-CR	1761-1831	71	NZ_CP024264	Escherichia coli O169:H41 strain F6326-C1 plasmid unnamed1	35947-36017	11	0.845
NZ_AP017612_1	1.3\|1761\|71\|NZ_AP017612\|PILER-CR	1761-1831	71	NZ_CP034165	Escherichia albertii strain 2014C-4015 plasmid p2014C-4015-1, complete sequence	37020-37090	11	0.845
NZ_AP017612_1	1.3\|1761\|71\|NZ_AP017612\|PILER-CR	1761-1831	71	NZ_CP023851	Escherichia coli strain 4/0 plasmid p4_0.2, complete sequence	2752-2822	12	0.831
NZ_AP017612_1	1.3\|1761\|71\|NZ_AP017612\|PILER-CR	1761-1831	71	CP022461	Shigella sonnei strain 2015C-3807 plasmid unnamed2, complete sequence	21537-21607	12	0.831
NZ_AP017612_1	1.3\|1761\|71\|NZ_AP017612\|PILER-CR	1761-1831	71	NZ_CP045191	Escherichia coli strain NT1F31 plasmid pNT1F31-113kb, complete sequence	1541-1611	12	0.831
NZ_AP017612_1	1.3\|1761\|71\|NZ_AP017612\|PILER-CR	1761-1831	71	NZ_CP045278	Escherichia coli strain LAU-OXA plasmid pLAU-OXA1, complete sequence	1541-1611	12	0.831
NZ_AP017612_1	1.3\|1761\|71\|NZ_AP017612\|PILER-CR	1761-1831	71	NZ_CP041426	Escherichia coli strain STEC388 plasmid pSTEC388_1, complete sequence	82711-82781	12	0.831
NZ_AP017612_1	1.3\|1761\|71\|NZ_AP017612\|PILER-CR	1761-1831	71	NZ_CP027358	Escherichia coli strain 2013C-4991 plasmid unnamed3, complete sequence	53926-53996	12	0.831
NZ_AP017612_1	1.3\|1761\|71\|NZ_AP017612\|PILER-CR	1761-1831	71	NC_018651	Escherichia coli O104:H4 str. 2009EL-2050 plasmid p09EL50, complete sequence	62226-62296	12	0.831
NZ_AP017612_1	1.3\|1761\|71\|NZ_AP017612\|PILER-CR	1761-1831	71	NZ_CP010153	Escherichia coli strain D9 plasmid A, complete genome	71671-71741	12	0.831
NZ_AP017612_1	1.3\|1761\|71\|NZ_AP017612\|PILER-CR	1761-1831	71	CP025888	Escherichia coli strain 503046 plasmid p503046_111, complete sequence	1542-1612	12	0.831
NZ_AP017612_1	1.3\|1761\|71\|NZ_AP017612\|PILER-CR	1761-1831	71	NZ_CP022167	Escherichia coli strain M160133 plasmid pM160133_p3, complete sequence	1541-1611	12	0.831
NZ_AP017612_1	1.3\|1761\|71\|NZ_AP017612\|PILER-CR	1761-1831	71	NZ_CP027369	Escherichia coli strain 2014C-3307 plasmid unnamed1, complete sequence	83120-83190	12	0.831
NZ_AP017612_1	1.3\|1761\|71\|NZ_AP017612\|PILER-CR	1761-1831	71	NZ_CP010144	Escherichia coli strain D4 plasmid A, complete genome	71749-71819	12	0.831
NZ_AP017612_1	1.3\|1761\|71\|NZ_AP017612\|PILER-CR	1761-1831	71	NZ_CP019002	Escherichia coli strain Ecol_AZ155 plasmid pECAZ155_2, complete sequence	94652-94722	12	0.831
NZ_AP017612_1	1.3\|1761\|71\|NZ_AP017612\|PILER-CR	1761-1831	71	CP045933	Shigella sonnei strain AUSMDU00010534 plasmid pAUSMDU00010534_01, complete sequence	1541-1611	12	0.831
NZ_AP017612_1	1.3\|1761\|71\|NZ_AP017612\|PILER-CR	1761-1831	71	NZ_CP022085	Escherichia coli O104:H4 strain FDAARGOS_348 plasmid unnamed1, complete sequence	96987-97057	12	0.831
NZ_AP017612_1	1.3\|1761\|71\|NZ_AP017612\|PILER-CR	1761-1831	71	NZ_LR213459	Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 2	1541-1611	12	0.831
NZ_AP017612_1	1.3\|1761\|71\|NZ_AP017612\|PILER-CR	1761-1831	71	CP054387	Escherichia phage CMS-2020a, complete genome	1541-1611	12	0.831
NZ_AP017612_1	1.3\|1761\|71\|NZ_AP017612\|PILER-CR	1761-1831	71	CP053388	Escherichia phage CMS-2020a, complete sequence	1541-1611	12	0.831
NZ_AP017612_1	1.3\|1761\|71\|NZ_AP017612\|PILER-CR	1761-1831	71	NZ_CP050499	Escherichia coli strain RM13322 plasmid pRM13322, complete sequence	69721-69791	12	0.831
NZ_AP017612_1	1.3\|1761\|71\|NZ_AP017612\|PILER-CR	1761-1831	71	NZ_CP041423	Escherichia coli strain STEC409 plasmid pSTEC409_1, complete sequence	18256-18326	12	0.831
NZ_AP017612_1	1.3\|1761\|71\|NZ_AP017612\|PILER-CR	1761-1831	71	NZ_CP019013	Escherichia coli strain Ecol_AZ162 plasmid pECAZ162_2, complete sequence	7746-7816	12	0.831
NZ_AP017612_1	1.3\|1761\|71\|NZ_AP017612\|PILER-CR	1761-1831	71	CP053753	Shigella sonnei strain 506 plasmid pMHMC-002, complete sequence	75363-75433	12	0.831
NZ_AP017612_1	1.3\|1761\|71\|NZ_AP017612\|PILER-CR	1761-1831	71	NZ_CP015915	Escherichia coli strain 210205630 isolate 210205630 plasmid pSLy3, complete sequence	75842-75912	12	0.831
NZ_AP017612_1	1.3\|1761\|71\|NZ_AP017612\|PILER-CR	1761-1831	71	NZ_CP025894	Escherichia coli strain 503025 plasmid p503025_100, complete sequence	87016-87086	12	0.831
NZ_AP017612_1	1.3\|1761\|71\|NZ_AP017612\|PILER-CR	1761-1831	71	NZ_CP025868	Escherichia coli strain 504211 plasmid p504211_100, complete sequence	28984-29054	12	0.831
NZ_AP017612_1	1.3\|1761\|71\|NZ_AP017612\|PILER-CR	1761-1831	71	NZ_CP025870	Escherichia coli strain 503829 plasmid p503829_100, complete sequence	703-773	12	0.831
NZ_AP017612_1	1.3\|1761\|71\|NZ_AP017612\|PILER-CR	1761-1831	71	NZ_CP048306	Escherichia coli strain 9 plasmid p009_B, complete sequence	1541-1611	12	0.831
NZ_AP017612_1	1.3\|1761\|71\|NZ_AP017612\|PILER-CR	1761-1831	71	NZ_CP019283	Escherichia coli strain 13P484A plasmid p13P484A-3, complete sequence	70497-70567	12	0.831
NZ_AP017612_1	1.3\|1761\|71\|NZ_AP017612\|PILER-CR	1761-1831	71	NZ_CP041451	Escherichia coli strain YPE3 plasmid pYPE3-114k, complete sequence	1541-1611	12	0.831
NZ_AP017612_1	1.3\|1761\|71\|NZ_AP017612\|PILER-CR	1761-1831	71	MF554642	uncultured bacterium clone AA-105 plasmid pTIC, complete sequence	31163-31233	12	0.831
NZ_AP017612_1	1.3\|1761\|71\|NZ_AP017612\|PILER-CR	1761-1831	71	NZ_CP025883	Escherichia coli strain 503440 plasmid p503440_100, complete sequence	64174-64244	12	0.831
NZ_AP017612_1	1.3\|1761\|71\|NZ_AP017612\|PILER-CR	1761-1831	71	CP025897	Escherichia coli strain 500465 plasmid p500465_152, complete sequence	137112-137182	12	0.831
NZ_AP017612_1	1.3\|1761\|71\|NZ_AP017612\|PILER-CR	1761-1831	71	NZ_CP024271	Escherichia coli strain F8111-1SC3 plasmid unnamed2	75004-75074	13	0.817
NZ_AP017612_1	1.3\|1761\|71\|NZ_AP017612\|PILER-CR	1761-1831	71	NZ_CP031136	Escherichia coli strain CFSAN064035 plasmid pGMI17-003_2, complete sequence	104363-104433	13	0.817
NZ_AP017612_1	1.3\|1761\|71\|NZ_AP017612\|PILER-CR	1761-1831	71	NZ_CP012114	Escherichia coli strain PSUO78 plasmid pPSUO78_2, complete sequence	63294-63364	13	0.817

1. spacer 1.2|1691|54|NZ_AP017612|PILER-CR matches to NZ_KY515225 (Escherichia coli strain 244 plasmid AnCo2, complete sequence) position: , mismatch: 0, identity: 1.0

aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	CRISPR spacer
aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
******************************************************

2. spacer 1.2|1691|54|NZ_AP017612|PILER-CR matches to NZ_CP050499 (Escherichia coli strain RM13322 plasmid pRM13322, complete sequence) position: , mismatch: 0, identity: 1.0

aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	CRISPR spacer
aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
******************************************************

3. spacer 1.2|1691|54|NZ_AP017612|PILER-CR matches to NZ_AP017612 (Escherichia coli strain 20Ec-P-124 plasmid pMRY16-002_2, complete sequence) position: , mismatch: 0, identity: 1.0

aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	CRISPR spacer
aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
******************************************************

4. spacer 1.2|1691|54|NZ_AP017612|PILER-CR matches to CP022461 (Shigella sonnei strain 2015C-3807 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	CRISPR spacer
aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
******************************************************

5. spacer 1.2|1691|54|NZ_AP017612|PILER-CR matches to NZ_CP024271 (Escherichia coli strain F8111-1SC3 plasmid unnamed2) position: , mismatch: 0, identity: 1.0

aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	CRISPR spacer
aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
******************************************************

6. spacer 1.2|1691|54|NZ_AP017612|PILER-CR matches to NZ_CP048306 (Escherichia coli strain 9 plasmid p009_B, complete sequence) position: , mismatch: 0, identity: 1.0

aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	CRISPR spacer
aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
******************************************************

7. spacer 1.2|1691|54|NZ_AP017612|PILER-CR matches to MK125034 (Escherichia coli O25b:H4-ST131 plasmid p7.2.1, complete sequence) position: , mismatch: 0, identity: 1.0

aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	CRISPR spacer
aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
******************************************************

8. spacer 1.2|1691|54|NZ_AP017612|PILER-CR matches to MK125035 (Escherichia coli O25b:H4-ST131 plasmid pB20 clone ST131-Rx_O25b:fimH30, complete sequence) position: , mismatch: 0, identity: 1.0

aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	CRISPR spacer
aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
******************************************************

9. spacer 1.2|1691|54|NZ_AP017612|PILER-CR matches to NZ_CP027358 (Escherichia coli strain 2013C-4991 plasmid unnamed3, complete sequence) position: , mismatch: 0, identity: 1.0

aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	CRISPR spacer
aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
******************************************************

10. spacer 1.2|1691|54|NZ_AP017612|PILER-CR matches to NZ_CP041423 (Escherichia coli strain STEC409 plasmid pSTEC409_1, complete sequence) position: , mismatch: 0, identity: 1.0

aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	CRISPR spacer
aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
******************************************************

11. spacer 1.2|1691|54|NZ_AP017612|PILER-CR matches to CP053753 (Shigella sonnei strain 506 plasmid pMHMC-002, complete sequence) position: , mismatch: 0, identity: 1.0

aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	CRISPR spacer
aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
******************************************************

12. spacer 1.2|1691|54|NZ_AP017612|PILER-CR matches to NC_018651 (Escherichia coli O104:H4 str. 2009EL-2050 plasmid p09EL50, complete sequence) position: , mismatch: 0, identity: 1.0

aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	CRISPR spacer
aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
******************************************************

13. spacer 1.2|1691|54|NZ_AP017612|PILER-CR matches to NZ_CP024264 (Escherichia coli O169:H41 strain F6326-C1 plasmid unnamed1) position: , mismatch: 0, identity: 1.0

aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	CRISPR spacer
aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
******************************************************

14. spacer 1.2|1691|54|NZ_AP017612|PILER-CR matches to NZ_CP010153 (Escherichia coli strain D9 plasmid A, complete genome) position: , mismatch: 0, identity: 1.0

aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	CRISPR spacer
aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
******************************************************

15. spacer 1.2|1691|54|NZ_AP017612|PILER-CR matches to NZ_CP027369 (Escherichia coli strain 2014C-3307 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	CRISPR spacer
aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
******************************************************

16. spacer 1.2|1691|54|NZ_AP017612|PILER-CR matches to NZ_CP010144 (Escherichia coli strain D4 plasmid A, complete genome) position: , mismatch: 0, identity: 1.0

aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	CRISPR spacer
aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
******************************************************

17. spacer 1.2|1691|54|NZ_AP017612|PILER-CR matches to NZ_CP019027 (Escherichia coli strain Ecol_881 plasmid pEC881_2, complete sequence) position: , mismatch: 0, identity: 1.0

aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	CRISPR spacer
aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
******************************************************

18. spacer 1.2|1691|54|NZ_AP017612|PILER-CR matches to NZ_CP019002 (Escherichia coli strain Ecol_AZ155 plasmid pECAZ155_2, complete sequence) position: , mismatch: 0, identity: 1.0

aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	CRISPR spacer
aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
******************************************************

19. spacer 1.2|1691|54|NZ_AP017612|PILER-CR matches to CP045933 (Shigella sonnei strain AUSMDU00010534 plasmid pAUSMDU00010534_01, complete sequence) position: , mismatch: 0, identity: 1.0

aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	CRISPR spacer
aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
******************************************************

20. spacer 1.2|1691|54|NZ_AP017612|PILER-CR matches to NZ_CP041451 (Escherichia coli strain YPE3 plasmid pYPE3-114k, complete sequence) position: , mismatch: 0, identity: 1.0

aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	CRISPR spacer
aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
******************************************************

21. spacer 1.2|1691|54|NZ_AP017612|PILER-CR matches to NZ_CP034165 (Escherichia albertii strain 2014C-4015 plasmid p2014C-4015-1, complete sequence) position: , mismatch: 0, identity: 1.0

aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	CRISPR spacer
aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
******************************************************

22. spacer 1.2|1691|54|NZ_AP017612|PILER-CR matches to NZ_CP022085 (Escherichia coli O104:H4 strain FDAARGOS_348 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	CRISPR spacer
aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
******************************************************

23. spacer 1.2|1691|54|NZ_AP017612|PILER-CR matches to NZ_CP014490 (Escherichia coli strain G749 plasmid pG749_2, complete sequence) position: , mismatch: 0, identity: 1.0

aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	CRISPR spacer
aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
******************************************************

24. spacer 1.2|1691|54|NZ_AP017612|PILER-CR matches to NC_023916 (Escherichia coli H89 plasmid pECOH89, complete sequence) position: , mismatch: 0, identity: 1.0

aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	CRISPR spacer
aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
******************************************************

25. spacer 1.2|1691|54|NZ_AP017612|PILER-CR matches to NZ_LR213459 (Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 2) position: , mismatch: 0, identity: 1.0

aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	CRISPR spacer
aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
******************************************************

26. spacer 1.2|1691|54|NZ_AP017612|PILER-CR matches to NZ_KY515224 (Escherichia coli strain 243 plasmid AnCo1, complete sequence) position: , mismatch: 0, identity: 1.0

aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	CRISPR spacer
aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
******************************************************

27. spacer 1.2|1691|54|NZ_AP017612|PILER-CR matches to MF554642 (uncultured bacterium clone AA-105 plasmid pTIC, complete sequence) position: , mismatch: 0, identity: 1.0

aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	CRISPR spacer
aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
******************************************************

28. spacer 1.2|1691|54|NZ_AP017612|PILER-CR matches to CP054387 (Escherichia phage CMS-2020a, complete genome) position: , mismatch: 0, identity: 1.0

aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	CRISPR spacer
aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
******************************************************

29. spacer 1.2|1691|54|NZ_AP017612|PILER-CR matches to NZ_CP025883 (Escherichia coli strain 503440 plasmid p503440_100, complete sequence) position: , mismatch: 1, identity: 0.981

aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	CRISPR spacer
aattttgttctggttatacccataccgatacacattattcatgcaatgtcttaa	Protospacer
***************************.**************************

30. spacer 1.2|1691|54|NZ_AP017612|PILER-CR matches to NZ_CP025894 (Escherichia coli strain 503025 plasmid p503025_100, complete sequence) position: , mismatch: 1, identity: 0.981

aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	CRISPR spacer
aattttgttctggttatacccataccgatacacattattcatgcaatgtcttaa	Protospacer
***************************.**************************

31. spacer 1.2|1691|54|NZ_AP017612|PILER-CR matches to NZ_CP025868 (Escherichia coli strain 504211 plasmid p504211_100, complete sequence) position: , mismatch: 1, identity: 0.981

aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	CRISPR spacer
aattttgttctggttatacccataccgatacacattattcatgcaatgtcttaa	Protospacer
***************************.**************************

32. spacer 1.2|1691|54|NZ_AP017612|PILER-CR matches to NZ_CP025870 (Escherichia coli strain 503829 plasmid p503829_100, complete sequence) position: , mismatch: 1, identity: 0.981

aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	CRISPR spacer
aattttgttctggttatacccataccgatacacattattcatgcaatgtcttaa	Protospacer
***************************.**************************

33. spacer 1.2|1691|54|NZ_AP017612|PILER-CR matches to NZ_CP019283 (Escherichia coli strain 13P484A plasmid p13P484A-3, complete sequence) position: , mismatch: 1, identity: 0.981

aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	CRISPR spacer
aattttgttctggttataccaataccggtacacattattcatgcaatgtcttaa	Protospacer
******************** *********************************

34. spacer 1.2|1691|54|NZ_AP017612|PILER-CR matches to NZ_CP045191 (Escherichia coli strain NT1F31 plasmid pNT1F31-113kb, complete sequence) position: , mismatch: 1, identity: 0.981

aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	CRISPR spacer
aattttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	Protospacer
**************************** *************************

35. spacer 1.2|1691|54|NZ_AP017612|PILER-CR matches to NZ_CP041426 (Escherichia coli strain STEC388 plasmid pSTEC388_1, complete sequence) position: , mismatch: 1, identity: 0.981

aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	CRISPR spacer
aattttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	Protospacer
**************************** *************************

36. spacer 1.2|1691|54|NZ_AP017612|PILER-CR matches to CP025897 (Escherichia coli strain 500465 plasmid p500465_152, complete sequence) position: , mismatch: 1, identity: 0.981

aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	CRISPR spacer
aattttgttctggttatacccataccgatacacattattcatgcaatgtcttaa	Protospacer
***************************.**************************

37. spacer 1.2|1691|54|NZ_AP017612|PILER-CR matches to NZ_CP022167 (Escherichia coli strain M160133 plasmid pM160133_p3, complete sequence) position: , mismatch: 1, identity: 0.981

aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	CRISPR spacer
aattttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	Protospacer
**************************** *************************

38. spacer 1.2|1691|54|NZ_AP017612|PILER-CR matches to NZ_CP015915 (Escherichia coli strain 210205630 isolate 210205630 plasmid pSLy3, complete sequence) position: , mismatch: 1, identity: 0.981

aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	CRISPR spacer
aattttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	Protospacer
**************************** *************************

39. spacer 1.2|1691|54|NZ_AP017612|PILER-CR matches to NZ_CP012114 (Escherichia coli strain PSUO78 plasmid pPSUO78_2, complete sequence) position: , mismatch: 1, identity: 0.981

aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	CRISPR spacer
aattttgttctggttatacccataccggtacacattattcatgcaatgccttaa	Protospacer
************************************************.*****

40. spacer 1.2|1691|54|NZ_AP017612|PILER-CR matches to NZ_CP023851 (Escherichia coli strain 4/0 plasmid p4_0.2, complete sequence) position: , mismatch: 2, identity: 0.963

aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	CRISPR spacer
aattttgttctggttatacccataccgggacacattattcatgcaatttcttaa	Protospacer
**************************** ****************** ******

41. spacer 1.2|1691|54|NZ_AP017612|PILER-CR matches to NZ_CP045278 (Escherichia coli strain LAU-OXA plasmid pLAU-OXA1, complete sequence) position: , mismatch: 2, identity: 0.963

aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	CRISPR spacer
aattttgttctggttatacccataccgggacacattattcatgcaatttcttaa	Protospacer
**************************** ****************** ******

42. spacer 1.2|1691|54|NZ_AP017612|PILER-CR matches to NZ_CP019013 (Escherichia coli strain Ecol_AZ162 plasmid pECAZ162_2, complete sequence) position: , mismatch: 2, identity: 0.963

aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	CRISPR spacer
aattttgttctggttatacccataccgggacacattattcatgcaatttcttaa	Protospacer
**************************** ****************** ******

43. spacer 1.2|1691|54|NZ_AP017612|PILER-CR matches to CP025888 (Escherichia coli strain 503046 plasmid p503046_111, complete sequence) position: , mismatch: 2, identity: 0.963

aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	CRISPR spacer
aattttgttctggttatacccataccgggacacattattcatgcaatttcttaa	Protospacer
**************************** ****************** ******

44. spacer 1.2|1691|54|NZ_AP017612|PILER-CR matches to NZ_CP031136 (Escherichia coli strain CFSAN064035 plasmid pGMI17-003_2, complete sequence) position: , mismatch: 2, identity: 0.963

aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	CRISPR spacer
aattttgttctggttatacccataccgggacacattattcatgcaatttcttaa	Protospacer
**************************** ****************** ******

45. spacer 1.2|1691|54|NZ_AP017612|PILER-CR matches to CP053388 (Escherichia phage CMS-2020a, complete sequence) position: , mismatch: 2, identity: 0.963

aattttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	CRISPR spacer
aattttgttctggttatacccataccgggacacattattcatgcaatttcttaa	Protospacer
**************************** ****************** ******

46. spacer 1.1|1609|66|NZ_AP017612|PILER-CR matches to NZ_CP050499 (Escherichia coli strain RM13322 plasmid pRM13322, complete sequence) position: , mismatch: 6, identity: 0.909

gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	CRISPR spacer
gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	Protospacer
************************************************************

47. spacer 1.1|1609|66|NZ_AP017612|PILER-CR matches to NZ_AP017612 (Escherichia coli strain 20Ec-P-124 plasmid pMRY16-002_2, complete sequence) position: , mismatch: 6, identity: 0.909

gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	CRISPR spacer
gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	Protospacer
************************************************************

48. spacer 1.1|1609|66|NZ_AP017612|PILER-CR matches to CP022461 (Shigella sonnei strain 2015C-3807 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.909

gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	CRISPR spacer
gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	Protospacer
************************************************************

49. spacer 1.1|1609|66|NZ_AP017612|PILER-CR matches to CP053753 (Shigella sonnei strain 506 plasmid pMHMC-002, complete sequence) position: , mismatch: 6, identity: 0.909

gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	CRISPR spacer
gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	Protospacer
************************************************************

50. spacer 1.1|1609|66|NZ_AP017612|PILER-CR matches to NC_018651 (Escherichia coli O104:H4 str. 2009EL-2050 plasmid p09EL50, complete sequence) position: , mismatch: 6, identity: 0.909

gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	CRISPR spacer
gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	Protospacer
************************************************************

51. spacer 1.1|1609|66|NZ_AP017612|PILER-CR matches to CP045933 (Shigella sonnei strain AUSMDU00010534 plasmid pAUSMDU00010534_01, complete sequence) position: , mismatch: 6, identity: 0.909

gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	CRISPR spacer
gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	Protospacer
************************************************************

52. spacer 1.1|1609|66|NZ_AP017612|PILER-CR matches to NZ_CP022085 (Escherichia coli O104:H4 strain FDAARGOS_348 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.909

gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	CRISPR spacer
gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	Protospacer
************************************************************

53. spacer 1.1|1609|66|NZ_AP017612|PILER-CR matches to NZ_LR213459 (Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 2) position: , mismatch: 6, identity: 0.909

gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	CRISPR spacer
gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	Protospacer
************************************************************

54. spacer 1.1|1609|66|NZ_AP017612|PILER-CR matches to CP054387 (Escherichia phage CMS-2020a, complete genome) position: , mismatch: 6, identity: 0.909

gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	CRISPR spacer
gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	Protospacer
************************************************************

55. spacer 1.1|1609|66|NZ_AP017612|PILER-CR matches to NZ_CP048306 (Escherichia coli strain 9 plasmid p009_B, complete sequence) position: , mismatch: 6, identity: 0.909

gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	CRISPR spacer
gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	Protospacer
************************************************************

56. spacer 1.1|1609|66|NZ_AP017612|PILER-CR matches to NZ_CP019283 (Escherichia coli strain 13P484A plasmid p13P484A-3, complete sequence) position: , mismatch: 6, identity: 0.909

gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	CRISPR spacer
gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	Protospacer
************************************************************

57. spacer 1.1|1609|66|NZ_AP017612|PILER-CR matches to NZ_CP019002 (Escherichia coli strain Ecol_AZ155 plasmid pECAZ155_2, complete sequence) position: , mismatch: 6, identity: 0.909

gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	CRISPR spacer
gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	Protospacer
************************************************************

58. spacer 1.1|1609|66|NZ_AP017612|PILER-CR matches to NZ_CP041451 (Escherichia coli strain YPE3 plasmid pYPE3-114k, complete sequence) position: , mismatch: 6, identity: 0.909

gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	CRISPR spacer
gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	Protospacer
************************************************************

59. spacer 1.1|1609|66|NZ_AP017612|PILER-CR matches to MF554642 (uncultured bacterium clone AA-105 plasmid pTIC, complete sequence) position: , mismatch: 6, identity: 0.909

gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	CRISPR spacer
gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	Protospacer
************************************************************

60. spacer 1.1|1609|66|NZ_AP017612|PILER-CR matches to NZ_CP045278 (Escherichia coli strain LAU-OXA plasmid pLAU-OXA1, complete sequence) position: , mismatch: 7, identity: 0.894

gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	CRISPR spacer
gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggtatatgtcag	Protospacer
**************************************************.*********

61. spacer 1.1|1609|66|NZ_AP017612|PILER-CR matches to CP025888 (Escherichia coli strain 503046 plasmid p503046_111, complete sequence) position: , mismatch: 7, identity: 0.894

gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	CRISPR spacer
gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggtatatgtcag	Protospacer
**************************************************.*********

62. spacer 1.1|1609|66|NZ_AP017612|PILER-CR matches to CP053388 (Escherichia phage CMS-2020a, complete sequence) position: , mismatch: 7, identity: 0.894

gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	CRISPR spacer
gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggtatatgtcag	Protospacer
**************************************************.*********

63. spacer 1.1|1609|66|NZ_AP017612|PILER-CR matches to NZ_CP025883 (Escherichia coli strain 503440 plasmid p503440_100, complete sequence) position: , mismatch: 7, identity: 0.894

gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	CRISPR spacer
gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatatcag	Protospacer
*******************************************************.****

64. spacer 1.1|1609|66|NZ_AP017612|PILER-CR matches to NZ_CP025894 (Escherichia coli strain 503025 plasmid p503025_100, complete sequence) position: , mismatch: 7, identity: 0.894

gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	CRISPR spacer
gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatatcag	Protospacer
*******************************************************.****

65. spacer 1.1|1609|66|NZ_AP017612|PILER-CR matches to NZ_CP025868 (Escherichia coli strain 504211 plasmid p504211_100, complete sequence) position: , mismatch: 7, identity: 0.894

gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	CRISPR spacer
gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatatcag	Protospacer
*******************************************************.****

66. spacer 1.1|1609|66|NZ_AP017612|PILER-CR matches to NZ_KY515225 (Escherichia coli strain 244 plasmid AnCo2, complete sequence) position: , mismatch: 7, identity: 0.894

gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	CRISPR spacer
gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggtatatgtcag	Protospacer
**************************************************.*********

67. spacer 1.1|1609|66|NZ_AP017612|PILER-CR matches to NZ_CP024271 (Escherichia coli strain F8111-1SC3 plasmid unnamed2) position: , mismatch: 7, identity: 0.894

gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	CRISPR spacer
gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggtatatgtcag	Protospacer
**************************************************.*********

68. spacer 1.1|1609|66|NZ_AP017612|PILER-CR matches to NZ_CP025870 (Escherichia coli strain 503829 plasmid p503829_100, complete sequence) position: , mismatch: 7, identity: 0.894

gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	CRISPR spacer
gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatatcag	Protospacer
*******************************************************.****

69. spacer 1.1|1609|66|NZ_AP017612|PILER-CR matches to NZ_CP045191 (Escherichia coli strain NT1F31 plasmid pNT1F31-113kb, complete sequence) position: , mismatch: 7, identity: 0.894

gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	CRISPR spacer
gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggtatatgtcag	Protospacer
**************************************************.*********

70. spacer 1.1|1609|66|NZ_AP017612|PILER-CR matches to NZ_CP041426 (Escherichia coli strain STEC388 plasmid pSTEC388_1, complete sequence) position: , mismatch: 7, identity: 0.894

gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	CRISPR spacer
gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggtatatgtcag	Protospacer
**************************************************.*********

71. spacer 1.1|1609|66|NZ_AP017612|PILER-CR matches to MK125034 (Escherichia coli O25b:H4-ST131 plasmid p7.2.1, complete sequence) position: , mismatch: 7, identity: 0.894

gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	CRISPR spacer
gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggtatatgtcag	Protospacer
**************************************************.*********

72. spacer 1.1|1609|66|NZ_AP017612|PILER-CR matches to MK125035 (Escherichia coli O25b:H4-ST131 plasmid pB20 clone ST131-Rx_O25b:fimH30, complete sequence) position: , mismatch: 7, identity: 0.894

gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	CRISPR spacer
gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggtatatgtcag	Protospacer
**************************************************.*********

73. spacer 1.1|1609|66|NZ_AP017612|PILER-CR matches to NZ_CP027358 (Escherichia coli strain 2013C-4991 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.894

gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	CRISPR spacer
gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggtatatgtcag	Protospacer
**************************************************.*********

74. spacer 1.1|1609|66|NZ_AP017612|PILER-CR matches to NZ_CP041423 (Escherichia coli strain STEC409 plasmid pSTEC409_1, complete sequence) position: , mismatch: 7, identity: 0.894

gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	CRISPR spacer
gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggtatatgtcag	Protospacer
**************************************************.*********

75. spacer 1.1|1609|66|NZ_AP017612|PILER-CR matches to NZ_CP024264 (Escherichia coli O169:H41 strain F6326-C1 plasmid unnamed1) position: , mismatch: 7, identity: 0.894

gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	CRISPR spacer
gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggtatatgtcag	Protospacer
**************************************************.*********

76. spacer 1.1|1609|66|NZ_AP017612|PILER-CR matches to NZ_CP010153 (Escherichia coli strain D9 plasmid A, complete genome) position: , mismatch: 7, identity: 0.894

gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	CRISPR spacer
gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggtatatgtcag	Protospacer
**************************************************.*********

77. spacer 1.1|1609|66|NZ_AP017612|PILER-CR matches to CP025897 (Escherichia coli strain 500465 plasmid p500465_152, complete sequence) position: , mismatch: 7, identity: 0.894

gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	CRISPR spacer
gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatatcag	Protospacer
*******************************************************.****

78. spacer 1.1|1609|66|NZ_AP017612|PILER-CR matches to NZ_CP022167 (Escherichia coli strain M160133 plasmid pM160133_p3, complete sequence) position: , mismatch: 7, identity: 0.894

gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	CRISPR spacer
gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggtatatgtcag	Protospacer
**************************************************.*********

79. spacer 1.1|1609|66|NZ_AP017612|PILER-CR matches to NZ_CP027369 (Escherichia coli strain 2014C-3307 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.894

gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	CRISPR spacer
gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggtatatgtcag	Protospacer
**************************************************.*********

80. spacer 1.1|1609|66|NZ_AP017612|PILER-CR matches to NZ_CP010144 (Escherichia coli strain D4 plasmid A, complete genome) position: , mismatch: 7, identity: 0.894

gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	CRISPR spacer
gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggtatatgtcag	Protospacer
**************************************************.*********

81. spacer 1.1|1609|66|NZ_AP017612|PILER-CR matches to NZ_CP019027 (Escherichia coli strain Ecol_881 plasmid pEC881_2, complete sequence) position: , mismatch: 7, identity: 0.894

gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	CRISPR spacer
gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggtatatgtcag	Protospacer
**************************************************.*********

82. spacer 1.1|1609|66|NZ_AP017612|PILER-CR matches to NZ_CP015915 (Escherichia coli strain 210205630 isolate 210205630 plasmid pSLy3, complete sequence) position: , mismatch: 7, identity: 0.894

gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	CRISPR spacer
gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggtatatgtcag	Protospacer
**************************************************.*********

83. spacer 1.1|1609|66|NZ_AP017612|PILER-CR matches to NZ_CP034165 (Escherichia albertii strain 2014C-4015 plasmid p2014C-4015-1, complete sequence) position: , mismatch: 7, identity: 0.894

gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	CRISPR spacer
gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggtatatgtcag	Protospacer
**************************************************.*********

84. spacer 1.1|1609|66|NZ_AP017612|PILER-CR matches to NZ_CP014490 (Escherichia coli strain G749 plasmid pG749_2, complete sequence) position: , mismatch: 7, identity: 0.894

gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	CRISPR spacer
gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggtatatgtcag	Protospacer
**************************************************.*********

85. spacer 1.1|1609|66|NZ_AP017612|PILER-CR matches to NC_023916 (Escherichia coli H89 plasmid pECOH89, complete sequence) position: , mismatch: 7, identity: 0.894

gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	CRISPR spacer
gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggtatatgtcag	Protospacer
**************************************************.*********

86. spacer 1.1|1609|66|NZ_AP017612|PILER-CR matches to NZ_KY515224 (Escherichia coli strain 243 plasmid AnCo1, complete sequence) position: , mismatch: 7, identity: 0.894

gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	CRISPR spacer
gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggtatatgtcag	Protospacer
**************************************************.*********

87. spacer 1.1|1609|66|NZ_AP017612|PILER-CR matches to NZ_CP023851 (Escherichia coli strain 4/0 plasmid p4_0.2, complete sequence) position: , mismatch: 8, identity: 0.879

gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	CRISPR spacer
gtgttattgaggaatttttgtttggatatgctatcagcggtaattaatggtatatgtcag	Protospacer
** ***********************************************.*********

88. spacer 1.1|1609|66|NZ_AP017612|PILER-CR matches to NZ_CP019013 (Escherichia coli strain Ecol_AZ162 plasmid pECAZ162_2, complete sequence) position: , mismatch: 8, identity: 0.879

gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	CRISPR spacer
gtgttattgaggaatttttgtttggatatgctatcagcggtaattaatggtatatgtcag	Protospacer
** ***********************************************.*********

89. spacer 1.1|1609|66|NZ_AP017612|PILER-CR matches to NZ_CP031136 (Escherichia coli strain CFSAN064035 plasmid pGMI17-003_2, complete sequence) position: , mismatch: 8, identity: 0.879

gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtcag	CRISPR spacer
gtgttattgaggaatttttgtttggatatgctatcagcggtaattaatggtatatgtcag	Protospacer
** ***********************************************.*********

90. spacer 1.1|1609|66|NZ_AP017612|PILER-CR matches to NZ_CP012114 (Escherichia coli strain PSUO78 plasmid pPSUO78_2, complete sequence) position: , mismatch: 8, identity: 0.879

-gttttattgaggaatttttgtttggatatgctatcagcggtaattaatggcatatgtca	CRISPR spacer
tgttttattgaggaa-ttttgtttggatatgctatcagcggtaattaatggcatatgtca	Protospacer
 ************** ********************************************

91. spacer 1.3|1761|71|NZ_AP017612|PILER-CR matches to NZ_AP017612 (Escherichia coli strain 20Ec-P-124 plasmid pMRY16-002_2, complete sequence) position: , mismatch: 11, identity: 0.845

aaaaaaacgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	CRISPR spacer
aaaaaaacgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	Protospacer
************************************************************

92. spacer 1.3|1761|71|NZ_AP017612|PILER-CR matches to NZ_CP019027 (Escherichia coli strain Ecol_881 plasmid pEC881_2, complete sequence) position: , mismatch: 11, identity: 0.845

aaaaaaacgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	CRISPR spacer
aaaaaaacgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	Protospacer
************************************************************

93. spacer 1.3|1761|71|NZ_AP017612|PILER-CR matches to NZ_CP024264 (Escherichia coli O169:H41 strain F6326-C1 plasmid unnamed1) position: , mismatch: 11, identity: 0.845

aaaaaaacgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	CRISPR spacer
aaaaaaacgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	Protospacer
************************************************************

94. spacer 1.3|1761|71|NZ_AP017612|PILER-CR matches to NZ_CP034165 (Escherichia albertii strain 2014C-4015 plasmid p2014C-4015-1, complete sequence) position: , mismatch: 11, identity: 0.845

aaaaaaacgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	CRISPR spacer
aaaaaaacgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	Protospacer
************************************************************

95. spacer 1.3|1761|71|NZ_AP017612|PILER-CR matches to NZ_CP023851 (Escherichia coli strain 4/0 plasmid p4_0.2, complete sequence) position: , mismatch: 12, identity: 0.831

aaaaaaacgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	CRISPR spacer
aaaaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	Protospacer
****** *****************************************************

96. spacer 1.3|1761|71|NZ_AP017612|PILER-CR matches to CP022461 (Shigella sonnei strain 2015C-3807 plasmid unnamed2, complete sequence) position: , mismatch: 12, identity: 0.831

aaaaaaacgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	CRISPR spacer
aaaaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	Protospacer
****** *****************************************************

97. spacer 1.3|1761|71|NZ_AP017612|PILER-CR matches to NZ_CP045191 (Escherichia coli strain NT1F31 plasmid pNT1F31-113kb, complete sequence) position: , mismatch: 12, identity: 0.831

aaaaaaacgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	CRISPR spacer
aaaaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	Protospacer
****** *****************************************************

98. spacer 1.3|1761|71|NZ_AP017612|PILER-CR matches to NZ_CP045278 (Escherichia coli strain LAU-OXA plasmid pLAU-OXA1, complete sequence) position: , mismatch: 12, identity: 0.831

aaaaaaacgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	CRISPR spacer
aaaaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	Protospacer
****** *****************************************************

99. spacer 1.3|1761|71|NZ_AP017612|PILER-CR matches to NZ_CP041426 (Escherichia coli strain STEC388 plasmid pSTEC388_1, complete sequence) position: , mismatch: 12, identity: 0.831

aaaaaaacgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	CRISPR spacer
aaaaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	Protospacer
****** *****************************************************

100. spacer 1.3|1761|71|NZ_AP017612|PILER-CR matches to NZ_CP027358 (Escherichia coli strain 2013C-4991 plasmid unnamed3, complete sequence) position: , mismatch: 12, identity: 0.831

aaaaaaacgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	CRISPR spacer
aaaaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	Protospacer
****** *****************************************************

101. spacer 1.3|1761|71|NZ_AP017612|PILER-CR matches to NC_018651 (Escherichia coli O104:H4 str. 2009EL-2050 plasmid p09EL50, complete sequence) position: , mismatch: 12, identity: 0.831

aaaaaaacgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	CRISPR spacer
aaaaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	Protospacer
****** *****************************************************

102. spacer 1.3|1761|71|NZ_AP017612|PILER-CR matches to NZ_CP010153 (Escherichia coli strain D9 plasmid A, complete genome) position: , mismatch: 12, identity: 0.831

aaaaaaacgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	CRISPR spacer
aaaaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	Protospacer
****** *****************************************************

103. spacer 1.3|1761|71|NZ_AP017612|PILER-CR matches to CP025888 (Escherichia coli strain 503046 plasmid p503046_111, complete sequence) position: , mismatch: 12, identity: 0.831

aaaaaaacgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	CRISPR spacer
aaaaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	Protospacer
****** *****************************************************

104. spacer 1.3|1761|71|NZ_AP017612|PILER-CR matches to NZ_CP022167 (Escherichia coli strain M160133 plasmid pM160133_p3, complete sequence) position: , mismatch: 12, identity: 0.831

aaaaaaacgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	CRISPR spacer
aaaaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	Protospacer
****** *****************************************************

105. spacer 1.3|1761|71|NZ_AP017612|PILER-CR matches to NZ_CP027369 (Escherichia coli strain 2014C-3307 plasmid unnamed1, complete sequence) position: , mismatch: 12, identity: 0.831

aaaaaaacgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	CRISPR spacer
aaaaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	Protospacer
****** *****************************************************

106. spacer 1.3|1761|71|NZ_AP017612|PILER-CR matches to NZ_CP010144 (Escherichia coli strain D4 plasmid A, complete genome) position: , mismatch: 12, identity: 0.831

aaaaaaacgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	CRISPR spacer
aaaaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	Protospacer
****** *****************************************************

107. spacer 1.3|1761|71|NZ_AP017612|PILER-CR matches to NZ_CP019002 (Escherichia coli strain Ecol_AZ155 plasmid pECAZ155_2, complete sequence) position: , mismatch: 12, identity: 0.831

aaaaaaacgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	CRISPR spacer
aaaaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	Protospacer
****** *****************************************************

108. spacer 1.3|1761|71|NZ_AP017612|PILER-CR matches to CP045933 (Shigella sonnei strain AUSMDU00010534 plasmid pAUSMDU00010534_01, complete sequence) position: , mismatch: 12, identity: 0.831

aaaaaaacgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	CRISPR spacer
aaaaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	Protospacer
****** *****************************************************

109. spacer 1.3|1761|71|NZ_AP017612|PILER-CR matches to NZ_CP022085 (Escherichia coli O104:H4 strain FDAARGOS_348 plasmid unnamed1, complete sequence) position: , mismatch: 12, identity: 0.831

aaaaaaacgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	CRISPR spacer
aaaaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	Protospacer
****** *****************************************************

110. spacer 1.3|1761|71|NZ_AP017612|PILER-CR matches to NZ_LR213459 (Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 2) position: , mismatch: 12, identity: 0.831

aaaaaaacgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	CRISPR spacer
aaaaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	Protospacer
****** *****************************************************

111. spacer 1.3|1761|71|NZ_AP017612|PILER-CR matches to CP054387 (Escherichia phage CMS-2020a, complete genome) position: , mismatch: 12, identity: 0.831

aaaaaaacgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	CRISPR spacer
aaaaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	Protospacer
****** *****************************************************

112. spacer 1.3|1761|71|NZ_AP017612|PILER-CR matches to CP053388 (Escherichia phage CMS-2020a, complete sequence) position: , mismatch: 12, identity: 0.831

aaaaaaacgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	CRISPR spacer
aaaaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	Protospacer
****** *****************************************************

113. spacer 1.3|1761|71|NZ_AP017612|PILER-CR matches to NZ_CP050499 (Escherichia coli strain RM13322 plasmid pRM13322, complete sequence) position: , mismatch: 12, identity: 0.831

aaaaaaacgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	CRISPR spacer
aaaaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	Protospacer
****** *****************************************************

114. spacer 1.3|1761|71|NZ_AP017612|PILER-CR matches to NZ_CP041423 (Escherichia coli strain STEC409 plasmid pSTEC409_1, complete sequence) position: , mismatch: 12, identity: 0.831

aaaaaaacgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	CRISPR spacer
aaaaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	Protospacer
****** *****************************************************

115. spacer 1.3|1761|71|NZ_AP017612|PILER-CR matches to NZ_CP019013 (Escherichia coli strain Ecol_AZ162 plasmid pECAZ162_2, complete sequence) position: , mismatch: 12, identity: 0.831

aaaaaaacgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	CRISPR spacer
aaaaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	Protospacer
****** *****************************************************

116. spacer 1.3|1761|71|NZ_AP017612|PILER-CR matches to CP053753 (Shigella sonnei strain 506 plasmid pMHMC-002, complete sequence) position: , mismatch: 12, identity: 0.831

aaaaaaacgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	CRISPR spacer
aaaaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	Protospacer
****** *****************************************************

117. spacer 1.3|1761|71|NZ_AP017612|PILER-CR matches to NZ_CP015915 (Escherichia coli strain 210205630 isolate 210205630 plasmid pSLy3, complete sequence) position: , mismatch: 12, identity: 0.831

aaaaaaacgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	CRISPR spacer
aaaaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	Protospacer
****** *****************************************************

118. spacer 1.3|1761|71|NZ_AP017612|PILER-CR matches to NZ_CP025894 (Escherichia coli strain 503025 plasmid p503025_100, complete sequence) position: , mismatch: 12, identity: 0.831

aaaaaaacgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	CRISPR spacer
aaaaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	Protospacer
****** *****************************************************

119. spacer 1.3|1761|71|NZ_AP017612|PILER-CR matches to NZ_CP025868 (Escherichia coli strain 504211 plasmid p504211_100, complete sequence) position: , mismatch: 12, identity: 0.831

aaaaaaacgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	CRISPR spacer
aaaaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	Protospacer
****** *****************************************************

120. spacer 1.3|1761|71|NZ_AP017612|PILER-CR matches to NZ_CP025870 (Escherichia coli strain 503829 plasmid p503829_100, complete sequence) position: , mismatch: 12, identity: 0.831

aaaaaaacgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	CRISPR spacer
aaaaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	Protospacer
****** *****************************************************

121. spacer 1.3|1761|71|NZ_AP017612|PILER-CR matches to NZ_CP048306 (Escherichia coli strain 9 plasmid p009_B, complete sequence) position: , mismatch: 12, identity: 0.831

aaaaaaacgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	CRISPR spacer
aaaaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	Protospacer
****** *****************************************************

122. spacer 1.3|1761|71|NZ_AP017612|PILER-CR matches to NZ_CP019283 (Escherichia coli strain 13P484A plasmid p13P484A-3, complete sequence) position: , mismatch: 12, identity: 0.831

aaaaaaacgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	CRISPR spacer
aaaaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	Protospacer
****** *****************************************************

123. spacer 1.3|1761|71|NZ_AP017612|PILER-CR matches to NZ_CP041451 (Escherichia coli strain YPE3 plasmid pYPE3-114k, complete sequence) position: , mismatch: 12, identity: 0.831

aaaaaaacgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	CRISPR spacer
aaaaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	Protospacer
****** *****************************************************

124. spacer 1.3|1761|71|NZ_AP017612|PILER-CR matches to MF554642 (uncultured bacterium clone AA-105 plasmid pTIC, complete sequence) position: , mismatch: 12, identity: 0.831

aaaaaaacgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	CRISPR spacer
aaaaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	Protospacer
****** *****************************************************

125. spacer 1.3|1761|71|NZ_AP017612|PILER-CR matches to NZ_CP025883 (Escherichia coli strain 503440 plasmid p503440_100, complete sequence) position: , mismatch: 12, identity: 0.831

aaaaaaacgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	CRISPR spacer
aaaaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	Protospacer
****** *****************************************************

126. spacer 1.3|1761|71|NZ_AP017612|PILER-CR matches to CP025897 (Escherichia coli strain 500465 plasmid p500465_152, complete sequence) position: , mismatch: 12, identity: 0.831

aaaaaaacgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	CRISPR spacer
aaaaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	Protospacer
****** *****************************************************

127. spacer 1.3|1761|71|NZ_AP017612|PILER-CR matches to NZ_CP024271 (Escherichia coli strain F8111-1SC3 plasmid unnamed2) position: , mismatch: 13, identity: 0.817

aaaaaaacgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	CRISPR spacer
aaaaaatcgagtaaagtatgctgtgagcggtgatatagactctcgatatgctatcagcgg	Protospacer
****** ************************** **************************

128. spacer 1.3|1761|71|NZ_AP017612|PILER-CR matches to NZ_CP031136 (Escherichia coli strain CFSAN064035 plasmid pGMI17-003_2, complete sequence) position: , mismatch: 13, identity: 0.817

aaaaaaacgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	CRISPR spacer
aaagaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	Protospacer
***.** *****************************************************

129. spacer 1.3|1761|71|NZ_AP017612|PILER-CR matches to NZ_CP012114 (Escherichia coli strain PSUO78 plasmid pPSUO78_2, complete sequence) position: , mismatch: 13, identity: 0.817

aaaaaaacgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	CRISPR spacer
taaaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcgg	Protospacer
 ***** *****************************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

100 : 108885

120

Salmonella_phage(81.82%)

portal,tail,integrase,terminase,tRNA,protease

attL 6317:6335|attR 72918:72936

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024180339.1\|100_1315_+	RepB family plasmid replication initiator protein	J9Q7H0	Salmonella_phage	1.1e-75	45.4
WP_001229345.1\|1894_2107_-	hypothetical protein	J9Q7S8	Salmonella_phage	3.4e-33	94.3
WP_000644408.1\|2106_2442_-	hypothetical protein	J9Q7Z5	Salmonella_phage	6.6e-39	73.9
WP_001265407.1\|2657_2933_-	hypothetical protein	J9Q738	Salmonella_phage	4.0e-34	75.8
WP_162755224.1\|2988_3414_-	hypothetical protein	J9Q7G9	Salmonella_phage	3.8e-60	75.4
WP_089546098.1\|3699_4116_-	DUF2591 family protein	A0A088CQ65	Enterobacteria_phage	4.6e-42	62.7
WP_089546095.1\|4279_4669_-	hypothetical protein	Q9EYC4	Enterobacteria_phage	4.3e-58	81.7
WP_032203371.1\|4689_5430_-	hypothetical protein	G4KK93	Yersinia_phage	5.7e-27	32.7
WP_052904267.1\|5475_6300_-	hypothetical protein	A0A0U4IID7	Pseudomonas_phage	5.4e-18	25.3
6317:6335	attL	NA	NA	NA	NA
WP_094276198.1\|6395_7226_-\|protease	serine protease	J9Q7Z4	Salmonella_phage	2.4e-114	89.9
WP_096488224.1\|7229_7430_-	hypothetical protein	J9Q6J0	Salmonella_phage	1.7e-10	62.1
WP_096488225.1\|8598_8865_-	hypothetical protein	J9Q7G8	Salmonella_phage	8.9e-31	78.4
WP_096488226.1\|8864_9809_-	exonuclease	J9Q7S6	Salmonella_phage	1.7e-161	88.2
WP_094122492.1\|9869_10898_-	regulator	J9Q7Z3	Salmonella_phage	9.4e-145	87.3
WP_000627054.1\|11015_11447_-	hypothetical protein	J9Q6I8	Salmonella_phage	1.5e-64	86.7
WP_096488228.1\|11572_15091_-	DNA polymerase III subunit alpha	J9Q7Z2	Salmonella_phage	0.0e+00	94.1
WP_096488230.1\|15271_16507_-	AAA family ATPase	J9Q733	Salmonella_phage	4.0e-198	81.3
WP_096488232.1\|16602_18711_-	cobalamin biosynthesis protein CobT	J9Q7G6	Salmonella_phage	8.2e-228	65.5
WP_029305696.1\|18809_19022_-	hypothetical protein	NA	NA	NA	NA
WP_001282577.1\|19273_19660_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_096488234.1\|19654_20758_-\|integrase	site-specific integrase	A0A1P8DTG6	Proteus_phage	1.3e-27	33.8
WP_000156433.1\|20968_21214_-	GrxA family glutaredoxin	A0A2I7SAE2	Vibrio_phage	4.5e-13	44.9
WP_096488236.1\|21389_22286_+	hypothetical protein	NA	NA	NA	NA
WP_096488238.1\|23798_24089_-	C-type natriuretic protein	J9Q7S1	Salmonella_phage	1.2e-36	78.1
WP_012640723.1\|24234_24450_-	hypothetical protein	J9Q6I3	Salmonella_phage	2.2e-19	72.1
WP_021512312.1\|24433_24613_-	hypothetical protein	J9Q729	Salmonella_phage	9.2e-16	70.7
WP_048959192.1\|24609_25932_-	DNA ligase	J9Q7G5	Salmonella_phage	2.6e-240	90.9
WP_000989357.1\|25928_26186_-	hypothetical protein	J9Q7R9	Salmonella_phage	3.9e-15	59.0
WP_096488240.1\|26467_27250_-	hypothetical protein	J9Q7Z0	Salmonella_phage	9.0e-55	41.5
WP_172424396.1\|27325_28441_-	DNA primase	J9Q720	Salmonella_phage	5.0e-208	93.2
WP_049076695.1\|28589_29930_-	AAA family ATPase	J9Q7G4	Salmonella_phage	2.6e-235	93.5
WP_096488244.1\|29973_30714_-	hypothetical protein	J9Q7R8	Salmonella_phage	6.4e-127	89.2
WP_048959180.1\|30894_32589_-	hypothetical protein	X2KLG0	Campylobacter_phage	9.1e-12	24.7
WP_160378290.1\|32640_32994_-	hypothetical protein	J9Q7G3	Salmonella_phage	1.4e-44	97.9
WP_000161229.1\|32999_33668_-	AAA family ATPase	J9Q7R7	Salmonella_phage	5.8e-111	91.9
WP_001717321.1\|33844_34597_-	hypothetical protein	J9Q7Y8	Salmonella_phage	2.7e-16	31.1
WP_000931257.1\|34581_34965_-	hypothetical protein	A0A077SLR3	Escherichia_phage	1.3e-11	43.3
WP_000901561.1\|35337_35589_-	hypothetical protein	J9Q7R6	Salmonella_phage	1.1e-27	81.9
WP_000856758.1\|35590_36283_-	membrane protein	J9Q7Y7	Salmonella_phage	1.4e-123	93.9
WP_001717323.1\|36296_36620_-	hypothetical protein	J9Q6E7	Salmonella_phage	5.9e-45	89.7
WP_032328862.1\|36942_37551_-	hypothetical protein	J9Q7G0	Salmonella_phage	4.5e-78	73.8
WP_048959172.1\|37550_37805_-	hypothetical protein	J9Q7R5	Salmonella_phage	7.9e-29	69.0
WP_145955110.1\|37895_40061_-\|tail	tail fiber protein	U5N099	Enterobacteria_phage	4.8e-66	52.6
WP_096488250.1\|41515_46240_-	DUF1983 domain-containing protein	J9Q713	Salmonella_phage	0.0e+00	74.9
WP_001293196.1\|46257_46848_-\|tail	tail assembly protein	J9Q7F8	Salmonella_phage	8.4e-106	95.4
WP_000526939.1\|46835_47633_-	C40 family peptidase	J9Q7R4	Salmonella_phage	1.3e-154	93.6
WP_000511445.1\|47625_48324_-\|tail	phage minor tail protein L	J9Q7Y5	Salmonella_phage	1.5e-133	96.6
WP_000442113.1\|48406_48742_-\|tail	phage tail protein	J9Q6E1	Salmonella_phage	3.0e-52	86.4
WP_085458160.1\|48784_53338_-	tape measure protein	J9Q712	Salmonella_phage	0.0e+00	84.5
WP_000952686.1\|53345_53570_-	hypothetical protein	J9Q7F7	Salmonella_phage	8.8e-32	94.6
WP_000163861.1\|53695_54013_-	hypothetical protein	J9Q7R3	Salmonella_phage	8.6e-49	96.2
WP_048958837.1\|54068_54815_-	Ig domain-containing protein	J9Q7Y4	Salmonella_phage	2.4e-121	92.7
WP_000469440.1\|54889_55273_-	hypothetical protein	J9Q6D8	Salmonella_phage	1.2e-57	82.7
WP_000523628.1\|55274_55748_-	hypothetical protein	J9Q711	Salmonella_phage	3.3e-76	90.4
WP_001027663.1\|55738_56083_-	hypothetical protein	J9Q7F6	Salmonella_phage	2.3e-55	95.6
WP_061158048.1\|56162_56996_-	hypothetical protein	J9Q7R2	Salmonella_phage	2.7e-142	92.4
WP_061158049.1\|56995_57430_-	hypothetical protein	J9Q7Y3	Salmonella_phage	9.7e-59	81.2
WP_061158050.1\|57474_58395_-	Ig domain-containing protein	J9Q6D6	Salmonella_phage	1.3e-132	83.9
WP_061158051.1\|58468_59344_-	hypothetical protein	J9Q710	Salmonella_phage	1.5e-154	93.8
WP_078207870.1\|59369_60257_-	hypothetical protein	J9Q7F4	Salmonella_phage	3.0e-131	88.3
WP_000422361.1\|60278_61853_-\|portal	phage portal protein	J9Q7R1	Salmonella_phage	2.4e-285	92.9
WP_096488252.1\|61879_63136_-\|terminase	terminase	J9Q7Y2	Salmonella_phage	2.2e-244	96.2
WP_096488254.1\|63135_63768_-	DNA-binding protein	J9Q6D4	Salmonella_phage	1.0e-88	82.9
WP_000176292.1\|63964_64231_-	hypothetical protein	J9Q757	Salmonella_phage	1.4e-36	88.6
WP_000129633.1\|64240_65131_-	hypothetical protein	J9Q7I6	Salmonella_phage	2.6e-167	98.6
WP_096488256.1\|65127_65793_-	ATP-binding cassette domain-containing protein	J9Q807	Salmonella_phage	6.3e-110	98.1
WP_000161986.1\|65789_66458_-	ParB N-terminal domain-containing protein	J9Q6L1	Salmonella_phage	5.6e-106	89.6
WP_172424397.1\|66457_67138_-	ParB N-terminal domain-containing protein	J9Q756	Salmonella_phage	8.8e-107	87.6
WP_096488260.1\|67220_68780_+	DEAD/DEAH box helicase	J9Q7I4	Salmonella_phage	4.9e-278	92.7
WP_096488264.1\|68782_69061_+	hypothetical protein	J9Q7T9	Salmonella_phage	1.3e-24	62.6
WP_096488266.1\|69238_69832_+	hypothetical protein	NA	NA	NA	NA
WP_021520104.1\|69828_70350_+	hypothetical protein	J9Q6L0	Salmonella_phage	7.3e-53	68.2
WP_052967545.1\|70647_71298_+	hypothetical protein	J9Q754	Salmonella_phage	2.2e-99	85.2
WP_000255469.1\|71345_71549_+	hypothetical protein	J9Q7I3	Salmonella_phage	5.9e-27	91.0
WP_048958812.1\|71570_71798_+	hypothetical protein	NA	NA	NA	NA
WP_001009193.1\|72414_72897_-	hypothetical protein	J9Q805	Salmonella_phage	7.9e-62	69.8
WP_172424398.1\|73247_73622_-	hypothetical protein	NA	NA	NA	NA
72918:72936	attR	NA	NA	NA	NA
WP_047659410.1\|73739_74135_-	hypothetical protein	J9Q7I1	Salmonella_phage	1.2e-31	53.8
WP_000749407.1\|74263_74575_-	hypothetical protein	J9Q7T7	Salmonella_phage	5.7e-29	63.1
WP_096488268.1\|74728_75058_-	hypothetical protein	NA	NA	NA	NA
WP_000932312.1\|76610_76910_-	hypothetical protein	J9Q750	Salmonella_phage	4.7e-20	42.9
WP_096488272.1\|77071_79105_-\|tRNA	methionine--tRNA ligase	A0A1V0SEZ7	Hokovirus	2.2e-44	24.1
WP_000004356.1\|79262_80363_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_000506720.1\|80400_80790_-	DNA repair protein	A0A077SK24	Escherichia_phage	8.6e-67	93.0
WP_086118748.1\|80962_81487_-	toprim domain-containing protein	A0A2D2W4T4	Escherichia_phage	3.8e-33	48.5
WP_075207771.1\|81500_82352_-	hypothetical protein	A0A0F6TJ66	Escherichia_coli_O157_typing_phage	1.5e-23	94.8
WP_001683865.1\|82351_82573_-	hypothetical protein	G8C7S3	Escherichia_phage	1.2e-09	52.1
WP_096488274.1\|82565_83219_-	DUF551 domain-containing protein	A0A1I9LJM0	Stx_converting_phage	1.9e-34	43.2
WP_021547926.1\|83218_83404_-	hypothetical protein	NA	NA	NA	NA
WP_062877875.1\|83400_83931_-	hypothetical protein	A0A2I6TCG8	Escherichia_phage	7.0e-35	71.8
WP_096488276.1\|83927_84251_-	carboxylate--amine ligase	A0A222YZB4	Escherichia_phage	5.5e-43	88.2
WP_096488278.1\|84247_84721_-	ead/Ea22-like family protein	A0A222YWM9	Escherichia_phage	1.6e-43	66.4
WP_096488280.1\|84717_85173_-	hypothetical protein	A0A222YY85	Escherichia_phage	1.2e-19	60.2
WP_022644967.1\|85172_85715_-	hypothetical protein	J9Q748	Salmonella_phage	1.4e-86	87.4
WP_039052514.1\|85711_86353_-	HD domain-containing protein	J9Q7H7	Salmonella_phage	4.1e-98	86.9
WP_052924379.1\|86472_86853_-	hypothetical protein	J9Q801	Salmonella_phage	2.7e-28	69.8
WP_096488282.1\|86852_87557_-	hypothetical protein	J9Q6K2	Salmonella_phage	5.5e-88	77.4
WP_096488284.1\|87618_89304_-	DUF4942 domain-containing protein	J9Q747	Salmonella_phage	0.0e+00	92.2
WP_096488286.1\|89445_90012_-	hypothetical protein	J9Q7H6	Salmonella_phage	6.7e-60	66.3
WP_014962273.1\|90151_90310_-	DUF3927 family protein	NA	NA	NA	NA
WP_000900261.1\|90309_90735_-	tellurite/colicin resistance protein	Q71TK7	Escherichia_phage	5.7e-56	78.7
WP_014962274.1\|90828_91017_-	hypothetical protein	J9Q800	Salmonella_phage	9.4e-11	51.6
WP_172424399.1\|91026_91521_-	hypothetical protein	J9Q6J9	Salmonella_phage	3.8e-19	50.4
WP_096488288.1\|91669_92260_-	ribonuclease HI	J9Q745	Salmonella_phage	4.1e-92	81.7
WP_096488290.1\|92840_93071_-	hypothetical protein	J9Q7H5	Salmonella_phage	1.2e-31	85.5
WP_096488292.1\|94032_94842_-	hypothetical protein	J9Q7Z9	Salmonella_phage	4.0e-66	53.9
WP_021520508.1\|95002_95560_-	3'-5' exonuclease	J9Q6J8	Salmonella_phage	3.3e-88	83.6
WP_052904280.1\|95569_95989_-	hypothetical protein	J9Q743	Salmonella_phage	4.2e-51	71.2
WP_052924306.1\|96050_96695_-	AAA family ATPase	J9Q7H4	Salmonella_phage	1.3e-96	81.3
WP_000781810.1\|96694_97171_-	dihydrofolate reductase	J9Q7T1	Salmonella_phage	2.0e-81	90.5
WP_172424400.1\|97167_97569_-	hypothetical protein	J9Q7Z8	Salmonella_phage	2.5e-61	85.0
WP_053900136.1\|97582_98686_-	thymidylate synthase	J9Q6J6	Salmonella_phage	6.4e-192	87.2
WP_145955111.1\|98858_99728_-	phosphoribosyl-ATP pyrophosphohydrolase	J9Q742	Salmonella_phage	1.0e-131	80.3
WP_000122502.1\|99805_100948_-	ribonucleotide-diphosphate reductase subunit beta	J9Q7H3	Salmonella_phage	2.6e-196	88.7
WP_048959240.1\|101053_103369_-	ribonucleoside-diphosphate reductase subunit alpha	J9Q7T0	Salmonella_phage	0.0e+00	84.0
WP_000037962.1\|103442_104012_-	hypothetical protein	J9Q7Z7	Salmonella_phage	1.1e-91	86.8
WP_048959236.1\|104021_104765_-	hypothetical protein	J9Q6J5	Salmonella_phage	3.8e-55	49.0
WP_001404451.1\|104754_106671_-	AAA family ATPase	J9Q741	Salmonella_phage	4.5e-249	73.2
WP_096488298.1\|106900_107986_-	metallophosphoesterase	J9Q7S9	Salmonella_phage	4.4e-185	87.0
WP_096488300.1\|108240_108885_-	hypothetical protein	J9Q739	Salmonella_phage	1.1e-106	85.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_AP017613

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

56724 : 64430

Shigella_phage(16.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_088895425.1\|56724_57952_+\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.3e-177	99.3
WP_000142445.1\|57984_58332_+	hypothetical protein	NA	NA	NA	NA
WP_000251881.1\|58351_58513_-	hypothetical protein	NA	NA	NA	NA
WP_001245884.1\|58959_59262_-	hypothetical protein	NA	NA	NA	NA
WP_000587689.1\|59258_59885_-	ParA family plasmid-partitioning AAA ATPase	E5FFJ3	Burkholderia_phage	2.0e-17	31.1
WP_000457473.1\|60088_61360_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	1.2e-141	60.2
WP_000109077.1\|61359_61797_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	2.4e-25	47.6
WP_000619113.1\|61793_62042_-	DinI-like family protein	Q2A098	Sodalis_phage	1.4e-14	48.0
WP_023842311.1\|62459_63362_+	DUF1281 domain-containing protein	NA	NA	NA	NA
WP_012680995.1\|63358_63670_+	hypothetical protein	NA	NA	NA	NA
WP_000086152.1\|63746_64430_+	DNA methylase	A0A2I7RE86	Vibrio_phage	2.5e-29	37.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_AP017610

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_AP017611

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_AP017612

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NZ_AP017613

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection