CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_AP017929	Lactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13	2 crisprs	cas3,csa3,DEDDh,DinG	1	0	5	0
NZ_AP017930	Lactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13 plasmid pLs13-a, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_AP017929_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP017929_1

299869-300275

Orphan

Consensus_repeat	Method
GTATCCCAATTCGAAACATCTAA	CRISPRCasFinder

5 spacers

The CRISPR arrays of NZ_AP017929_1

>merge|NZ_AP017929|1|299869-300275|CRISPRCasFinder
GTTTGCCACTTAGAAACGTCTAACTGCGTTAATCTTTGATCACCGCTGAACGTGTAAGACAACGATGTATTTTTGCCGAGCTGCCATTTTGAGACATCTAAGGTTTCAAGTCTTGAACATCCCGAAAAAGTATAAGCCATTGTCGTCACTTGGCTTGTATCCCAATTCGAAACATCTAATTCGGCAATACTAGTATTCAGAAAAGTACTACTTAAATTAGTAACGTGACTGGTATCCCAATTTGAAACATCTAAAACAGTAATGCCCGATTGTGAAAAGGTACTCCCCAGATTAGTCATTTTTGCCGTCTGCCATTTTGAAACATCTAAGTTCGTTAAGGCCGTACAATTGAAAAATGTGTTATTCATATTTTGAATATTAGAAGTGTCCCAATTCGTACTATTTAG

>NZ_AP017929|1|1|299869-300275|CRISPRCasFinder
GTTTGCCACTTAGAAACGTCTAA	CTGCGTTAATCTTTGATCACCGCTGAACGTGTAAGACAACGATGTATTTTTGCCG
AGCTGCCATTTTGAGACATCTAA	GGTTTCAAGTCTTGAACATCCCGAAAAAGTATAAGCCATTGTCGTCACTTGGCTT
GTATCCCAATTCGAAACATCTAA	TTCGGCAATACTAGTATTCAGAAAAGTACTACTTAAATTAGTAACGTGACTG
GTATCCCAATTTGAAACATCTAA	AACAGTAATGCCCGATTGTGAAAAGGTACTCCCCAGATTAGTCATTTTTGCC
GTCTGCCATTTTGAAACATCTAA	GTTCGTTAAGGCCGTACAATTGAAAAATGTGTTATTCATATTTTGAATATTAGAA
GTGTCCCAATTCGTACTATTTAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP017929.1\|WP_035145629.1\|297840_298713_-\|WxL-domain-containing-protein	unknown	unknown	gnl\|CDD\|372694
NZ_AP017929.1\|WP_051524282.1\|295833_296511_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017929.1\|WP_025016105.1\|301251_302244_-\|choloylglycine-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|238303
NZ_AP017929.1\|WP_025016102.1\|296729_297767_-\|DUF916-and-DUF3324-domain-containing-protein	unknown	unknown	gnl\|CDD\|371730
NZ_AP017929.1\|WP_025016097.1\|291083_292073_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375451
NZ_AP017929.1\|WP_025016099.1\|294233_294518_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|197670
NZ_AP017929.1\|WP_025016108.1\|310331_311240_-\|ribokinase	unknown	unknown	gnl\|CDD\|274000
NZ_AP017929.1\|WP_016264496.1\|303114_303651_-\|DUF308-domain-containing-protein	unknown	unknown	gnl\|CDD\|225786
NZ_AP017929.1\|WP_056936442.1\|303686_305810_-\|ATP-dependent-Clp-protease-ATP-binding-subunit	unknown	unknown	gnl\|CDD\|223616
NZ_AP017929.1\|WP_025016101.1\|294999_295563_-\|DUF916-domain-containing-protein	unknown	unknown	gnl\|CDD\|368712
NZ_AP017929.1\|WP_011373916.1\|306205_306895_-\|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|172606
NZ_AP017929.1\|WP_011373914.1\|308546_309101_-\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NZ_AP017929.1\|WP_157697960.1\|295654_295831_-\|WxL-domain-containing-protein	unknown	unknown	gnl\|CDD\|372694
NZ_AP017929.1\|WP_025016109.1\|311259_311655_-\|D-ribose-pyranase	unknown	unknown	gnl\|CDD\|183318
NZ_AP017929.1\|WP_025016096.1\|290649_290952_-\|LPXTG-cell-wall-anchor-domain-containing-protein	unknown	unknown	gnl\|CDD\|366278
NZ_AP017929.1\|WP_035145621.1\|309244_310267_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_AP017929.1\|WP_025016100.1\|294510_294945_-\|DUF3324-domain-containing-protein	unknown	unknown	gnl\|CDD\|371730
NZ_AP017929.1\|WP_025016106.1\|302440_303058_+\|DUF1361-domain-containing-protein	unknown	unknown	gnl\|CDD\|369208
NZ_AP017929.1\|WP_025016098.1\|292082_294002_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375450
NZ_AP017929.1\|WP_011373915.1\|306990_308550_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794

Protein	Function_ID	Function_description	E-value
NZ_AP017929.1\|WP_035145629.1\|297840_298713_-\|WxL-domain-containing-protein	gnl\|CDD\|372694	pfam13731, WxL, WxL domain surface cell wall-binding. The WxL motif appears in two or three copies in these bacterial proteins and confers a cell surface localization function. It seems likely that this region is the cell wall-binding domain of gram-positive bacteria, and may interact with the peptidoglycan.	1.3377e-16
NZ_AP017929.1\|WP_011373915.1\|306990_308550_-\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	7.83511e-67
NZ_AP017929.1\|WP_025016105.1\|301251_302244_-\|choloylglycine-hydrolase-family-protein	gnl\|CDD\|238303	cd00542, Ntn_PVA, Penicillin V acylase (PVA), also known as conjugated bile salt acid hydrolase (CBAH), catalyzes the hydrolysis of penicillin V to yield 6-amino penicillanic acid (6-APA), an important key intermediate of semisynthetic penicillins. PVA has an N-terminal nucleophilic cysteine, as do other members of the Ntn hydrolase family to which PVA belongs. This nucleophilic cysteine is exposed by post-translational prossessing of the PVA precursor. PVA forms a homotetramer.	1.30921e-149
NZ_AP017929.1\|WP_025016102.1\|296729_297767_-\|DUF916-and-DUF3324-domain-containing-protein	gnl\|CDD\|371730	pfam11797, DUF3324, Protein of unknown function C-terminal (DUF3324). This family consists of several hypothetical bacterial proteins of unknown function.	5.18202e-43
NZ_AP017929.1\|WP_025016097.1\|291083_292073_-\|hypothetical-protein	gnl\|CDD\|375451	pfam17966, Mub_B2, Mub B2-like domain. This entry corresponds to the Mub B2 domain. This domain is related to the Mub B1 domain pfam17965. This domain may be involved in mucin binding. This domain is often found associated with the related pfam17965 in bacterial cell surface proteins.	5.14977e-17
NZ_AP017929.1\|WP_025016099.1\|294233_294518_-\|hypothetical-protein	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.51461e-06
NZ_AP017929.1\|WP_025016108.1\|310331_311240_-\|ribokinase	gnl\|CDD\|274000	TIGR02152, Putative_ribokinase, ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not. [Energy metabolism, Sugars].	2.55136e-126
NZ_AP017929.1\|WP_016264496.1\|303114_303651_-\|DUF308-domain-containing-protein	gnl\|CDD\|225786	COG3247, HdeD, Uncharacterized conserved protein [Function unknown].	4.18527e-14
NZ_AP017929.1\|WP_056936442.1\|303686_305810_-\|ATP-dependent-Clp-protease-ATP-binding-subunit	gnl\|CDD\|223616	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].	0
NZ_AP017929.1\|WP_025016101.1\|294999_295563_-\|DUF916-domain-containing-protein	gnl\|CDD\|368712	pfam06030, DUF916, Bacterial protein of unknown function (DUF916). This family consists of several hypothetical bacterial proteins of unknown function.	3.84271e-31
NZ_AP017929.1\|WP_011373916.1\|306205_306895_-\|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase	gnl\|CDD\|172606	PRK14116, gpmA, 2,3-diphosphoglycerate-dependent phosphoglycerate mutase.	1.12494e-164
NZ_AP017929.1\|WP_011373914.1\|308546_309101_-\|PadR-family-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	3.48625e-10
NZ_AP017929.1\|WP_157697960.1\|295654_295831_-\|WxL-domain-containing-protein	gnl\|CDD\|372694	pfam13731, WxL, WxL domain surface cell wall-binding. The WxL motif appears in two or three copies in these bacterial proteins and confers a cell surface localization function. It seems likely that this region is the cell wall-binding domain of gram-positive bacteria, and may interact with the peptidoglycan.	0.00128998
NZ_AP017929.1\|WP_025016109.1\|311259_311655_-\|D-ribose-pyranase	gnl\|CDD\|183318	PRK11797, PRK11797, D-ribose pyranase; Provisional.	4.56237e-74
NZ_AP017929.1\|WP_025016096.1\|290649_290952_-\|LPXTG-cell-wall-anchor-domain-containing-protein	gnl\|CDD\|366278	pfam00746, Gram_pos_anchor, LPXTG cell wall anchor motif.	6.9213e-05
NZ_AP017929.1\|WP_035145621.1\|309244_310267_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	2.93039e-104
NZ_AP017929.1\|WP_025016100.1\|294510_294945_-\|DUF3324-domain-containing-protein	gnl\|CDD\|371730	pfam11797, DUF3324, Protein of unknown function C-terminal (DUF3324). This family consists of several hypothetical bacterial proteins of unknown function.	7.04333e-16
NZ_AP017929.1\|WP_025016106.1\|302440_303058_+\|DUF1361-domain-containing-protein	gnl\|CDD\|369208	pfam07099, DUF1361, Protein of unknown function (DUF1361). This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although some members are annotated as being putative integral membrane proteins.	1.89048e-27
NZ_AP017929.1\|WP_025016098.1\|292082_294002_-\|hypothetical-protein	gnl\|CDD\|375450	pfam17965, MucBP_2, Mucin binding domain. This domain is found in bacterial cell surface proteins that interact with mucins. The archetypal member of this family is the Mub-R5 B1 domain. This domain has a beta-grasp fold.	1.10213e-12

>NZ_AP017929.1|WP_035145629.1|297840_298713_-|WxL-domain-containing-protein
MSQPVTSNTVDMNVVQSEHQLTIRYVDLDEDLSQPASAGTQIAAPITVSGKTGTALSTLLPGQQVAPKVIEGYTIYSVSEDPDLKPENWQKAYRDDPQIGDQDRIITYGYKKAMLSIDAPSSWEFGDYNNKPMDRTYYLNHNQGTPQAVTVTDNYGVQNWQLQVSQAKPFVDSEQHELTDAKWAFSNGNVKTLSNTDVGTVTNNSEHFTLASGQSATLMTMTKSGHFQSDSPDTSDPENPYTQVGQGQWAYRFGDEKSADYSIGLNVPATTKRYTGHYRTKLTWSLSVGP
>NZ_AP017929.1|WP_025016102.1|296729_297767_-|DUF916-and-DUF3324-domain-containing-protein
MRLRKWTTGLAVGLFGWLLLASNQPVSAAQEHIDFEVEKVKSNRQVDQENRFFDLGIEPGKKETIQVLVHNFSDKNIKVHSEIDNSLTQQGGGIIYRPTKDGIIKETSHTLMDVAKVHRADRVITLGPNEVKKVSATITMPSEQTKGMIYGAWHFIEYGQKETDNHSNVSGSYAYNMGIVLRGKPYEIYPELKYQGVNPTVRNGHPALGIQLNNTKPMAIKNAKVKAVVYKNGFFKDKRVYETDSVDVAPNSQWTVPISWAFDRLKPGRYNISISVKGNSYWNQLPMSWHFRKKITINQQQADKINQASVKKPVNKWAYVATASGILMLVSFWFVYRVLKLTRGL
>NZ_AP017929.1|WP_051524282.1|295833_296511_-|hypothetical-protein
MKFTKLTSTVLTASTLLAILAPATIASAATPKDDAAANGGTKLPMTDTTDAGISFGDTHDNGNSGYLRLQMVPKTLDFGNHAKYDAAHTNFDATGANLGVVGNDTHASYDQQDSNKTETLTTSDANLKAVQGTAWATVVDKQVENPELAAATPKANTAGDWKLTVSADGDGLKAGGHTIADANLVFGNTKYGRTADIYGLTNQDQDNDGYTALGQQMQHTQNQLA
>NZ_AP017929.1|WP_157697960.1|295654_295831_-|WxL-domain-containing-protein
MSTPNEEKVVGTAAKDAGDGANVFGWNPSDIRLALNGSNDVATGEYHAGLTWTLNTTI
>NZ_AP017929.1|WP_025016101.1|294999_295563_-|DUF916-domain-containing-protein
MFKRLNMLWFCLILVDLLTVQTSNPVFAKSEGLAIPAEPKATFMLRPELPKDNLGCKRLGYFNLKLKRGQQRTVFLKVFNPTAQPLTIYGRVKDATTNDNATVDYLGANPIDRQLLKQPGSQLVKVPRATKLQPNETKRLKVTIQAPAKGFKGQKATAINLSTNQLAKHNAVENHYVYAITLILNGR
>NZ_AP017929.1|WP_025016100.1|294510_294945_-|DUF3324-domain-containing-protein
MKQKRAAISVAIANPNPAYLKSATVKVDLQNQQWSLIRYQDQKSNRKIAPNSRFYEDVPLGGKRLVAGVYRMTLTIKTAHQQQIIHKNIAISKGQARYINQNNDQYLKYRNLLLLGGFVMVLMGVIGGYRILKVKHMKRDEHDD
>NZ_AP017929.1|WP_025016099.1|294233_294518_-|hypothetical-protein
MIKSEKNQYLEGYQLLTRLENGLDTIAKRHGVSFSQYLILKQIVENDCNEPSLLAKAFAISRPAMSRKLTVLFRNGKIKKLYNLKDEDQRITSL
>NZ_AP017929.1|WP_025016098.1|292082_294002_-|hypothetical-protein
MNREKGFRKVLLFGLALYVVGFGLGQDVTHSYATEASSDATLTSQLSSDSESTSSQSSSETLASETPKIAPETKGESTNPVKVMPSLAKTQTPVTQKVARAATTYKIQDLIDQGGVKTTVTWDIYSQSEDDISQGYTGTYYPKVIKFSVLPNNVLQPGDTISFSVLRYTGKLSGQGPVTMASVSLRELGQYDGKSLVLGSEYVPDKAVDASSDLPKSSGGVATLTNETTPDYTAAYAGSTINGTKSSVTVIPATHFNGFQVTNAAVGSDKKGTLTLSGYTKDQTYFQSALDGTPNLKGVPTANYVRIYRIDKESAQNINKVSFDLKTYMPALMPDGQHMAAKAGTTGPMLFIKAPAAVPINNSGSVAADATDDEIIAKTSPQTYGVLHNSDGSMTLYLNYGNLTRPYELPVDTITKGVMNNSWDGTQEGLDYALNRLSNNNYSALATSTYFTMNISFNDPSIENTVQATYKDTLNNTETINQPSSPPSASTDGQTTIKVHYADQNGKYIKPIETHYGWPDTDKLQITTQDLTIPGYTLDKSNLPKGADPDTGALTLSYPKEAGKVDDILYRFIQNKQKIDVTYVDDTTGKQLATDTMSGVVDENSKYNTQTKLAAYEKQGYQLVSDETNGATLLFSDQD
>NZ_AP017929.1|WP_025016097.1|291083_292073_-|hypothetical-protein
MHLKHAIKAAPDESKQVKRTIHYRYQSNKQAAPDVVDKITFTRHDQIDQVTNQSIGFTKWVSTEGTTTFAKQTSPVIKGYTADQLTVPAVENITQDSADITATVTYTGQAQKATVTYQRSDNQAVIQADQLTGVSGQISVYRTDATLAALADKGYTVADNPYPSDGLVFDDDVAVDQNVTVLLNYNPYYNRVYFKSVPSEMDFGQHTLASTTESYQPTVNQALSIQDERALGSKWTLKAALVQPFTGDTQKAPLEGDLTYQRANQLPTMITAQSTIIATTTTTSHDPVDISGQWQNQLGPQLVVPVGGALIDQYAAQVEWTLEDGVANE
>NZ_AP017929.1|WP_025016096.1|290649_290952_-|LPXTG-cell-wall-anchor-domain-containing-protein
MRWLKNKSKFVVLMLIIGSGLIVVNPTHTSANAQTATKSVARVGFYETGQPHKQAPIQTETKQQARLPQTGTSSVGLSTIVGIVLLIGSLGLFKQRRGNF
>NZ_AP017929.1|WP_025016105.1|301251_302244_-|choloylglycine-hydrolase-family-protein
MCTSLTYSTVDGHHFLARTMDFSFELNGNPLFLPRQHQWQPVLEKQAIQNQYALMGAGAKLGDQYLVADGFNEHGLGCAELYFAHAAVYEPQPVPNKLNLVAEEFIVWVLGNYQTLEEVAADLDNVRIIESDQGVMGANQPLHWILSDRSGKTMVIEPRGNGLQLIDDPVGVMTNTPDLDWHIKNLSNYLNLQPQPFMERPFGNYQAGPFSQGTGTQALPGSYTPPDRFVRAAYSRQYMPEANNVAEGVNHILHILDNVTIPKGVNIGSGGSSDYTQYQGISGLNNLAYYMVNYDNRHVYQTNLTTDLIENQKEPVIYHLPQGQQNTILN
>NZ_AP017929.1|WP_025016106.1|302440_303058_+|DUF1361-domain-containing-protein
MSKKVLTIHAIILLFFALILLYQSRFAFLIWNIILALIPFDLSLLGRLFKNSRWRYLIGVVWLLFFPNALYMITDFSHLSSIGVGLSTAFQFVEYAILAGGIFVGVTLGLTSLFILYPLFIPNYQRLVNQAATFGVLSVCSSVAIYIGRFLRINSWDVFYQLHTTIASVLGVLNQSDFWIFVIAFSILQLILMLMGYQLAQLDDL
>NZ_AP017929.1|WP_016264496.1|303114_303651_-|DUF308-domain-containing-protein
MLSKNISNKLRQATGVNGLLSLILGLLILFLPGQSAMGVTVMVGVVFIIIGLFDILSIFKEVDENTWVRLGHLLLGLLYLIVGIFVCVNLAASATYLFLLVGIFVGITWLVEGFVELGTVRLAVSKGWTIFSAVLSIVAGIILLMTPLYGAVMLWTLLGAILVVLGIFKVAHYLAWQK
>NZ_AP017929.1|WP_056936442.1|303686_305810_-|ATP-dependent-Clp-protease-ATP-binding-subunit
MANMYGNDPFFNNDMDDIFNQVFRRMGNSESARYVINGRELSPDEFAQYRATGKLPNREKEIEIKQNGEHALKKGGILEKLGRNLTQEARDGLLDPVIGRYNEIQETAEILSRRTKNNPILVGDAGVGKTAVVEGLAQEIVAGKVPEAIKDKEIYSIDLSSLEAGTQYRGSFEENIKNLIKEVKAAGNVILFFDEIHQILGIGSTGGEDGGKGLADIIKPALSRGELTVIGATTQDEYRNTILKNAALARRFNDVLVNEPSAADTVKILQGIKGLYEKHHHIELPDDVLKAAVDYSAQYIPQRTLPDKAIDLLDMTAAHLAAKRPETDKAKLAAELKQLEADKAAAVEAENYQAAEELKVKIEKIKAQLATDDQHAAEVIATVDDIAQSVERLTGIPVAKMGSNDIQRLKNLGQRLKDKVIGQDEAVEMVARAIRRNRAGFSEGNQPIGSFLFVGPTGVGKTELAKQLALDMFGNKEAIIRLDMSEYADRTAVSKLIGTTAGYVGYDDNSNTLTERVRRNPYSIVLFDEIEKADPQVLTLLLQVMDDGRLTDGQGNVIDFKNTVIIATSNAGFGNEKLTMNDQEDAKLLDKLAPYFRPEFLNRFNGIVEFTHLTKADLSQIVDLMLTNVEQTLAKKELTLVVSKEAKDWLMEEGYDEAMGARPLRRVIEQQIRDKVTDFYLDHADVKDLKADLVDDQIVIQAVDSEN
>NZ_AP017929.1|WP_011373916.1|306205_306895_-|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase
MAKLVFIRHGQSEWNLSNQFTGWVDVNLSEEGVRQAQNAGALLKKEGILFDQAYTSVLTRAIKTLHYALEGSDQLWIPETKSWRLNERHYGALQGQNKAEAAEKWGDEQVHIWRRSYDTLPPLLDASDEGSAANDRRYAHLDPKAIPGGENLKVTLERVIPFWEDEIAPKLIDGQNIIVAAHGNSLRALTKYIENISDEDIMDVEMATGEPVVYDLDENLNVVSKKKLN
>NZ_AP017929.1|WP_011373915.1|306990_308550_-|MFS-transporter
MKKTTNRWIALVAMSLGVFMGLLDVTVVNVALPSMAVDFKTTFSNLQWVLNAYTLMYAVSLLIVSKLGDMFGRKKIFIMSMILFTAASVVNGLAPNLLVLDIGRAIQAIGGSGMMSLSMALVASNFEGRERGTALGILGSVIGFSTAIGPLVGGFLVESFGWPSIFFVNLPVGIISVYLVIRNVKETPAYGAGESIDFMGMFLSAIGLFSGIYGLIQKEQHMHWAWTDMRIMGWLVASVLILALFVFVELKAKAPMMNLTLLTNRHFVGVVILAFSLGAGIFALAAYQTSLMQNYMGYSAFSTGVHQLPMSLWSLVLGPFTGVLGYKFGKKWLIAFGFTVSALGLLIFRQVTTTDFTYMQLLPLLALTGLGNAIINPMINTAAMDNINPQEIGMASGLLNVFRQIGITVGVVILGLSQTNAYESSLSTGFSGSSIPKAAATGIHQSLVEAGAFSGHAIAWGQQLVKTPYAAKVQQMVVTAFDKGMIAVVTTSLVLMVIAILAALFLLKETKSVDQKPQK
>NZ_AP017929.1|WP_011373914.1|308546_309101_-|PadR-family-transcriptional-regulator
MYELLMLSALMSRNMSGYKLRIILENAMLPRRKISNGVLYPLLDKLENKGCIGFDEADQDSRGTKIAHITEEGRRYFAELMTKPVAHDAKWDDAYRFKMRGMHYIDSEEQISILQDYRNELAEDLHVYLGIKNHLTDLRDEEGTNTNYYQWQVRSMDFVITTLKAKVDWLEAQIKEIEKMEIVK
>NZ_AP017929.1|WP_035145621.1|309244_310267_-|LacI-family-DNA-binding-transcriptional-regulator
MGEVNVVRKVTIKDVAALAQTSVTTVSLILNNKGQRFSAETIARVRAAREKISYEPDYFAQNMVNKETKTIAVLVPDINNPFFSQFIQGVEEVAYQYDFIPLIYSAGQNNQKVNYYLKELVRRNVDGFILAVSHIEEETLEGHLKQRKIPYILLDQSEKQHQSDEIAVADTEGGRMAANYLIEKGHRQIGIVLPEQRAWNIEQRFIGYQAALVSHQITVNPDWQITTPLSKQGGYQVAQQVIDSGVSAVFAVNDELAIGLARGLAELGHAVPESISIIGYDDIDWCEYVTPRLTTIKQPILALGQEATRLLLNRIEKPTLGMQQKMLSVELVERDSVQAQ
>NZ_AP017929.1|WP_025016108.1|310331_311240_-|ribokinase
MKKVIVLGSTNVDTILNVQRFPQPGETLAMDGRAVAGGGKGANQAIAAVRSGAQTAFISKVGKEGAADFMIDTFKKDGMNVDHVRCSETAGTGQAYIMVDAQGQNSILIYGGANQDVTVEDVHEAETAIKAADRIVAQFEVPIPAIIEAFKIARANGVQTILNPAPAIKNIPAELLAVTDMIVPNETEAEIITGIKVTDEASMQANAEAMFKLGIKVVIITVGSKGSFYATPTATGFVPAFKVNAVDTTAAGDTFIGALSTKLELDYSNIEAAMTYANKASSIAVQTKGAQNSIPYEKDIQL
>NZ_AP017929.1|WP_025016109.1|311259_311655_-|D-ribose-pyranase
MRKTKVINTQISSVISDMGHFDTLSIGDAGMPVPAGTKKIDVAIENGVPSFIQVLTNILSELEVQKVYLANEIKTANPEQLAAIKALIGETPIEFIDHSQMKQDLNKAKAFVRTGEMTPYSNIILESGVVF

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Crispr_ID: NZ_AP017929_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP017929_2

843764-843847

Unclear

Consensus_repeat	Method
CTAGCACTAATGGCACGTTTAAA	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NZ_AP017929_2

>merge|NZ_AP017929|2|843764-843847|CRISPRCasFinder
CTAGCACTAATGGCACGTTTAAAAATTAGAGTGCTTTTAGTGCTTGTTTAGATTTTGAGCACTAGCACTAATAGCACGTTTAAA

>NZ_AP017929|2|2|843764-843847|CRISPRCasFinder
CTAGCACTAATGGCACGTTTAAA	AATTAGAGTGCTTTTAGTGCTTGTTTAGATTTTGAGCA
CTAGCACTAATAGCACGTTTAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP017929.1\|WP_011375300.1\|841405_841825_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_AP017929.1\|WP_025015944.1\|851932_852478_+\|hypoxanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|223707
NZ_AP017929.1\|WP_025015943.1\|854735_855614_+\|Hsp33-family-molecular-chaperone-HslO	unknown	unknown	gnl\|CDD\|234643
NZ_AP017929.1\|WP_025015945.1\|850513_851893_+\|tRNA-lysidine(34)-synthetase-TilS	unknown	unknown	gnl\|CDD\|238950
NZ_AP017929.1\|WP_016265610.1\|852566_854663_+\|ATP-dependent-zinc-metalloprotease-FtsH	unknown	unknown	gnl\|CDD\|273520
NZ_AP017929.1\|WP_011375295.1\|849055_849322_+\|RNA-binding-S4-domain-containing-protein	unknown	unknown	gnl\|CDD\|224109
NZ_AP017929.1\|WP_016265617.1\|837657_838179_+\|QueT-transporter-family-protein	unknown	unknown	gnl\|CDD\|227052
NZ_AP017929.1\|WP_025015946.1\|847462_849046_+\|polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|240529
NZ_AP017929.1\|WP_025015949.1\|838503_839184_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341358
NZ_AP017929.1\|WP_016265613.1\|849467_849866_+\|septum-formation-initiator-family-protein	unknown	unknown	gnl\|CDD\|368217
NZ_AP017929.1\|WP_011375293.1\|849986_850430_+\|RNA-binding-protein-S1	unknown	unknown	gnl\|CDD\|236305
NZ_AP017929.1\|WP_011375299.1\|841900_842878_-\|L-lactate-dehydrogenase	unknown	unknown	gnl\|CDD\|178836
NZ_AP017929.1\|WP_016265620.1\|835640_836783_+\|alanine-racemase	unknown	unknown	gnl\|CDD\|143481
NZ_AP017929.1\|WP_016265616.1\|839365_840745_-\|peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|341130
NZ_AP017929.1\|WP_011375298.1\|843108_843666_+\|aminoacyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|235457
NZ_AP017929.1\|WP_025015950.1\|837145_837511_+\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	unknown	unknown	gnl\|CDD\|367091
NZ_AP017929.1\|WP_016265619.1\|836864_837131_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP017929.1\|WP_025015947.1\|843904_847426_+\|transcription-repair-coupling-factor	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|224118
NZ_AP017929.1\|WP_025015942.1\|855697_856684_+\|tRNA-dihydrouridine-synthase-DusB	unknown	unknown	gnl\|CDD\|129820
NZ_AP017929.1\|WP_011375307.1\|835283_835637_+\|holo-ACP-synthase	unknown	unknown	gnl\|CDD\|234610

Protein	Function_ID	Function_description	E-value
NZ_AP017929.1\|WP_011375300.1\|841405_841825_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	3.34943e-17
NZ_AP017929.1\|WP_025015944.1\|851932_852478_+\|hypoxanthine-phosphoribosyltransferase	gnl\|CDD\|223707	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism].	6.70138e-88
NZ_AP017929.1\|WP_025015943.1\|854735_855614_+\|Hsp33-family-molecular-chaperone-HslO	gnl\|CDD\|234643	PRK00114, hslO, Hsp33 family molecular chaperone HslO.	1.03124e-152
NZ_AP017929.1\|WP_025015945.1\|850513_851893_+\|tRNA-lysidine(34)-synthetase-TilS	gnl\|CDD\|238950	cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.	4.03447e-71
NZ_AP017929.1\|WP_016265610.1\|852566_854663_+\|ATP-dependent-zinc-metalloprotease-FtsH	gnl\|CDD\|273520	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NZ_AP017929.1\|WP_011375295.1\|849055_849322_+\|RNA-binding-S4-domain-containing-protein	gnl\|CDD\|224109	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis].	3.11298e-27
NZ_AP017929.1\|WP_025015946.1\|847462_849046_+\|polysaccharide-biosynthesis-protein	gnl\|CDD\|240529	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins. The integral membrane protein SpoVB has been implicated in the biosynthesis of the peptidoglycan component of the spore cortex in Bacillus subtilis. This model represents a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	1.05663e-131
NZ_AP017929.1\|WP_025015949.1\|838503_839184_-\|CBS-domain-containing-protein	gnl\|CDD\|341358	cd02205, CBS_pair_SF, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	4.98845e-10
NZ_AP017929.1\|WP_016265613.1\|849467_849866_+\|septum-formation-initiator-family-protein	gnl\|CDD\|368217	pfam04977, DivIC, Septum formation initiator. DivIC from B. subtilis is necessary for both vegetative and sporulation septum formation. These proteins are mainly composed of an amino terminal coiled-coil.	8.33573e-07
NZ_AP017929.1\|WP_011375293.1\|849986_850430_+\|RNA-binding-protein-S1	gnl\|CDD\|236305	PRK08582, PRK08582, RNA-binding protein S1.	2.95316e-74
NZ_AP017929.1\|WP_011375299.1\|841900_842878_-\|L-lactate-dehydrogenase	gnl\|CDD\|178836	PRK00066, ldh, L-lactate dehydrogenase; Reviewed.	0
NZ_AP017929.1\|WP_016265620.1\|835640_836783_+\|alanine-racemase	gnl\|CDD\|143481	cd00430, PLPDE_III_AR, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase. This family includes predominantly bacterial alanine racemases (AR), some serine racemases (SerRac), and putative bifunctional enzymes containing N-terminal UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase (murF) and C-terminal AR domains. These proteins are fold type III PLP-dependent enzymes that play essential roles in peptidoglycan biosynthesis. AR catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. SerRac converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. murF catalyzes the addition of D-Ala-D-Ala to UDPMurNAc-tripeptide, the final step in the synthesis of the cytoplasmic precursor of bacterial cell wall peptidoglycan. Members of this family contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. AR and other members of this family require dimer formation and the presence of the PLP cofactor for catalytic activity. Fungal ARs and eukaryotic serine racemases, which are fold types I and II PLP-dependent enzymes respectively, are excluded from this family.	8.21061e-150
NZ_AP017929.1\|WP_016265616.1\|839365_840745_-\|peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|341130	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD. Members of the YkuD-like family of proteins are found in a range of bacteria. The best studied member Bacillus YkuD has been shown to act as an L,D-transpeptidase that gives rise to an alternative pathway for peptidoglycan cross-linking. Another member Helicobacter pylori Csd6 functions as an L,D-carboxypeptidase and regulates helical cell shape and motility. The conserved region contains a conserved histidine and cysteine, with the cysteine thought to be an active site residue.	1.38808e-30
NZ_AP017929.1\|WP_011375298.1\|843108_843666_+\|aminoacyl-tRNA-hydrolase	gnl\|CDD\|235457	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional.	7.65427e-102
NZ_AP017929.1\|WP_025015950.1\|837145_837511_+\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	gnl\|CDD\|367091	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system. PemK is a growth inhibitor in E. coli known to bind to the promoter region of the Pem operon, auto-regulating synthesis. This family represents the toxin molecule of a typical bacterial toxin-antitoxin system pairing. The family includes a number of different toxins, such as MazF, Kid, PemK, ChpA, ChpB and ChpAK.	1.04678e-36
NZ_AP017929.1\|WP_016265617.1\|837657_838179_+\|QueT-transporter-family-protein	gnl\|CDD\|227052	COG4708, COG4708, Predicted membrane protein [Function unknown].	1.71362e-28
NZ_AP017929.1\|WP_025015947.1\|843904_847426_+\|transcription-repair-coupling-factor	gnl\|CDD\|224118	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].	0
NZ_AP017929.1\|WP_025015942.1\|855697_856684_+\|tRNA-dihydrouridine-synthase-DusB	gnl\|CDD\|129820	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family. This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. [Unknown function, General].	3.91278e-138
NZ_AP017929.1\|WP_011375307.1\|835283_835637_+\|holo-ACP-synthase	gnl\|CDD\|234610	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional.	1.06907e-45

>NZ_AP017929.1|WP_011375298.1|843108_843666_+|aminoacyl-tRNA-hydrolase
MKMIVGLGNPGSKYAKTKHNIGFMVIDQLCEKYNVTLNKHDFEAEYGSFKYEGETVLLVKPLTFMNDSGRSVGPLMSYYQVGIDELLVIQDDMDLTMGKLRLRQKGSAGGHNGIKSIIAHTKSQTFKRLKIGIQHPQKSTVVNWVLTPFDKDGAPVINQAIDQACEAIDDWCQNDDFMKTMNKFN
>NZ_AP017929.1|WP_011375299.1|841900_842878_-|L-lactate-dehydrogenase
MANIEKDHQKVILVGDGAVGSSYAYALTLQGIAQEVGIVDIFKEKTQGDAIDLSDALAFTSPKKIYAAEYSDAKDADVVVITAGAPQKPGETRLDLVSKNLKILKTIVDPIVESGFNGIFLVAANPVDILTYATWKLSGFPKERVIGSGTSLDSARFRKDIAEMVNVDARSVHAYIMGEHGDTEFPVWSHANIGGIKISEWVKAHPEVKEEELVKIFESVRDAAYTIINLKGATFYGIGTALARITKAILDDENAVLPLSVFMDGQYGLNDIFIGSPAVINRSGITNILEIPLTDHEMESMHKSAKQLKDIVTKAFEELDIETRQ
>NZ_AP017929.1|WP_011375300.1|841405_841825_+|MarR-family-transcriptional-regulator
MVGKADTRMQLLGEWYSKLQQIATKLNAISRKYDVSFEQFLVIEQIIEEERKSPSELAVFFKTSLPAVSRKLNLLQSKRLVYKIRGEQDDQRLMRVNATPEGIETYESIKAELLTWDAQLKDHDINLMAMVNHTLEHAN
>NZ_AP017929.1|WP_016265616.1|839365_840745_-|peptidoglycan-binding-domain-containing-protein
MKVSKKAYTALGVAAVILIGGYSAMSLHYNKVFLPNTVVAGTNISGKSPAEANEALLKQVNHQKFTLKEDQTTRLSFTAKDAGFSHNFQPLLKKIQSSQNGWSWLGHQLSNPKKLQSENALILNQQTFKQFANQTVTKLNTGRTASKNATIKLVNENFEIVKEVNGNQIDQAQFEKTINKAINQGKTSIDLKQDYTVPTIKSTDSALQKTAKKMTTISDEKIHYSVNGNEFTVPKATIQGWLVNNNGAVSLDKTAVSNYVYQLKTKYDTYDKPLTFKSTKQGTVTVPAGIYGWSISPADEISALMKEVPEGKDFSRTAVIRGSGMAQKDRSVGSTYIEIDKKAQHMWLYQNGKVTIQTDVVTARPPQTTPSGVWSIWKKERNATLKGTNFDGVSEYASPVNYWMPIDETGVGIHDSPWQPKYGGTWYKEHGSHGCINTPPTIMAQLYNTVSEGIPVVVI
>NZ_AP017929.1|WP_025015949.1|838503_839184_-|CBS-domain-containing-protein
MLIKSLVLPKERLTTIEESVTPEEALTILEDSGYRCVPVLDASGKIFRGNIYKMHIYRHKSQGGDMQLPVTSLLKNMTKYIPVDAPFFKVFFNIKDLPYIAVLDEDSNFFGILTHSTLLNMLSEAWNLELSSYVLTVLSAGEQGDLVAMSKIIAKYTSIASCMTLDAKQDEFVRRTLFTLPSGLDIEILKKITNKLEKKGFKVPEIDDLQSGKVLRNDSDEIENVI
>NZ_AP017929.1|WP_016265617.1|837657_838179_+|QueT-transporter-family-protein
MTNQNHLRSVILNGLVAALYVVLSLFPGVLGLASSPIQFRVSEGLNHLVVFNKKYLWGVFGGVLVFNFFFSSENKILDTLFGGGQTLLALLVLTLVIPHLKKTWQKMLVNIILFTVSMFMIAWMIVLTGSTAKTQIPFWPTYATLAISEAVIMTITAPIMYAVDQVLHFERQI
>NZ_AP017929.1|WP_025015950.1|837145_837511_+|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin
MGELIQRGDIYYADLSPVVGSEQGGMRPVLIIQNDVGNHHSPTVIVAAITVKIQKPKLPTHVGITAKANGVERDSVILLEQVRTIDKQRLKDKVTHLVAEKMRQVDRALTISVGLQPVLNP
>NZ_AP017929.1|WP_016265619.1|836864_837131_+|hypothetical-protein
MEANHERLSVNLDVKLVQEIKTYCEVYGLDENDLIQDAIHEFMATRQAKVDNVINGYVEMANLNSQIAAEFNACESEAYARIRTVDLS
>NZ_AP017929.1|WP_016265620.1|835640_836783_+|alanine-racemase
MTVGYLRPTRILVDQNAIYENIQNELKHLEGTDTVIFPVLKANAYGHGLIPVAEAAQAAGAAGFCVALLDEALALRRANFTEPILVLGITQPSEIELAAANQISLTVGSLEWLQEAAAIAQQVPYLHPVPIHLSIDSGMGRIGMRDEAELLAAYTFIKAHSDYFDFEGVFTHFATADDPDDTYFKEQSARFNQLMTALPERPRFVHVSNSATSLWHAACNGNIIRMGISLYGLNPSGNAIPDLPYPLKPALGIESELVFVKQVAAGTKIGYGATYEASEGEWIGTIPMGYADGWLRRMQGSTVLVDGQRCEIVGRICMDQMMIRLPKRYPVGTKVVFVGKSGDDEITLQEVADYADTIHYEIICDLSDRIPRVYTGLNEH
>NZ_AP017929.1|WP_011375307.1|835283_835637_+|holo-ACP-synthase
MIVGLGIDLAEIDRFEKAQEKNSRFAEKVLTATEFELFSHYTGRRALEFLAGRFAVKEAFSKAYGTGIGQVKLQAVETLNDPQGKPYIKQDLFDGVVHVSLSHTATLVIAEVILERG
>NZ_AP017929.1|WP_025015947.1|843904_847426_+|transcription-repair-coupling-factor
MDLISMLGNTQQVQSVLENQKPGVRQLLTGLSGSAKTLFLATIYKQQRQPLLIIESNMFQANQVAEDLANQLNGDQIYTFPVEEVMAAEIAVSSPESRAERVRTLSFLATGKKGIVVTSVAGMRRLLPTARQWRDSQTQIEMGGEVDPKILGAQLAEMGYHRDKLVGKPGEFAMRGDIIDIFPLDTENPVRIELFDTEVDAIRSFEADTQRSIENLESVAIMPATDLLANAAQLEMAGEALQADYQQTAAKITAKDDQKALAVNFETPISRLLAGERLENLALFVDYLYPDHTSLIDYFKNSGLVVFDDYPRIQETQRVLAEEAANWQTDMLGNRRLLPAQKLLVDVHHLMKQDQHPHLYLSLFQKGMGKLKLDTLGNMPTRNVQQFFSQMPLLKTEMSRWQKQQQTVVVLVSDAKRVKKIDQTFHDFEIEATVTTKTKLVAGQIQIVQGSLQNGFELPDLKLVVLTEKELFNTAPKKKVRRQTLANAERLKSYSELKPGDYVVHVNHGIGEYVGMETLEVDGVHQDYITILYRDNGKLFIPVTQLDMVQKYVSAESKTPKINKLGGAEWQKTKSKVSAKIEDIADDLIELYAQREAEKGYAFPEDDQLQADFENQFAYPETDDQLRSTAEIKHDMEKVRPMDRLLVGDVGFGKTEVALRAAFKAVAAGKQVAFLVPTTILAQQHYENMLARFADFPVELGLLSRFKTRKEVTATLKGLEKGQVDIVIGTHRLLSKDVVFKDLGLLIVDEEQRFGVKHKERLKQLKAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPTNRYPIQTYVMEQNAGAMREAIERELERNGQVFYLHNRVSDIEQTVDEIQALVPEATVGYAHGQMTEAQLEGVIYDFVQGKYDVLVTTTIIETGVDMPNVNTMIVEDADHYGLSQLYQLRGRIGRSSRVAYGYFMYKPDKVLTEVSEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNLLGKQQHGFIDSVGFDLYSQMLSEAVAKKQGKKVAAKTNAEIDLKLEAYLPDDYINDQRQKIEIYKRIRQMDTEAAFTEIQSDLIDRFGDYPVQVAHLLTIGQLKMNADDALIETIKQVKDKIQVVLSPKGSRLVSGEQIFEALSATRLKATVGFEQEKLSVTLIIQPKMKTGDWLRELAIFVETLVEIEKKQLAK
>NZ_AP017929.1|WP_025015946.1|847462_849046_+|polysaccharide-biosynthesis-protein
MQNKQMQHLMKGAVVLSIASFVAKILSAVYRIPFQNMVGNTGFYVYQQVYPIYGIGMTFALSGFPVYISKIVAEETAPAEQTQILRRSFALLGLFGALIFFYLQYQAPAIAVAMADAELAPLIRMVSYMFLLMPFLAVTRGYFQGIFNMIPTATSQVAEQLVRVVVIILAAWLSLKLHWSVYEMGTWAMSGAFFGGLVATVALLKPAEKAFVLRGTKPKGINLGAYRSLAKRLLIEGGSICLFASLIVLLQLVDSFTVKKGLVASGLTEDFAKNLKGIFDRGQPLVQLGLVISMAFSSTLIPSLSRARQQQQDHQFQQVAESLIHISLGLSAAATTGLMILMPQVNYLLFGDADGNKALVWYMLSIVIIALINACNSVLQSLDQFHKTTIALLIGLLVKVVINQWLVQHFQIVGASVGTVISLGVVLALILRQSPELVRDALDGQHFTGKLVLICGIMAVAVRFVVTVIQPSLVSRGQAVLGAGVGIAVGVPVFISLALAWQLFSIREWLTIPGGKQLLKLAQKLKR
>NZ_AP017929.1|WP_011375295.1|849055_849322_+|RNA-binding-S4-domain-containing-protein
MRLDKFLKVSRIIKRRSVAKEIADKGRILINDRQAKSSSNVVVGDKLEIGFGNKTMIVKITQIIETTKKSDAAEMYEILETKVAENFE
>NZ_AP017929.1|WP_016265613.1|849467_849866_+|septum-formation-initiator-family-protein
MSRKITQIENAYTKQQAAKQKVEQKSKRTRTVHKRRLLALGVIALILFSVCGVQILQTHHSLALIEKQTVVKKQSLKKAKAKEADLKVQVSQLHNDDYLAKYIRYKYYYSKKGETIYSLPQDKAPNLNEQQK
>NZ_AP017929.1|WP_011375293.1|849986_850430_+|RNA-binding-protein-S1
MAVEVGSKVPGKVTGITNFGAFVDLGEGKTGLVHISEVSDSYIKDIHDVLTVGDEVTVKVMSDQNGKIGLSIRKAVDQPKVQEHTRPQSSRPNNNRGGYRKPEHTSAPKKEGFDDLLSGFLKDSEDRLSTIKRNTEGKRGGRGGRRS
>NZ_AP017929.1|WP_025015945.1|850513_851893_+|tRNA-lysidine(34)-synthetase-TilS
MLEQAFQNEIRRHQFWPTGAKVIVATSTGVDSMVLLTLLQRLPTALKPQLIVAHVNHELRTESVAEEAYLRQFCLENDLSLQVTHWPLQQHPQTGIEAAAREFRYQFFEHLMTAEKVDYLVTAHHGDDQLETLMMKFIRSGELHEMRGIQSQRPFADGTLIRPLLPFAKQDLRDFALANNITSFEDQTNYETTVLRNRVRHTLVPFLKQENGQILQNANRFSQQLTALLGQQAQLTTTLLPLLDLKVTDKVINGQLKAIKTLPTAQQTAIWQLIIKQYFPQISPLKETQLQQLKQLIQSTVKPQGQLALGQRLLFTKIYDRFQIGETTIGEIAVKDEKSRTLMLNKWCVLPNNEQIGIFEINHLPRKLSGQQLIWLADEQWPIVAKPCQLTDTIMIDKTHHKTLKRLFIDLKVPHEKRQNSWGIWSQETLIGHPEFRISALFNHEQTGKIRYVLCYISE
>NZ_AP017929.1|WP_025015944.1|851932_852478_+|hypoxanthine-phosphoribosyltransferase
MLEQDIERILYTREDIQRVNEKLGKQITADYEGKNPLMIGILKGAIVFMTDLIREIDLHVEIDFMDVSSYGEGTISSGEVKIIKDLDTSVQGRDIIIVEDIVDTGRTLNYLMSILKTRQANSIKVCTLMDKPSRRVVPVHSDYVGMEVPNEFVVGYGLDYAERYRNMGTISVLKPEIYSGK
>NZ_AP017929.1|WP_016265610.1|852566_854663_+|ATP-dependent-zinc-metalloprotease-FtsH
MNNKKNRLFSNSLFYIIILVALVGVFSFFMNGNSGSESKEVQSSTFLSELKTDKVKSFSIQPTNGIYKISGEYRKAQKDEQPKSTFFGSQSKNKKVTHFTTTLLQSDSQVSAITNLANQNKTKIETMQEPQSGWWVSILSLILPLIIMFGLFYMMMGQAGQGGGQGGRMMNFGKSKAQKADKGANKVRFSDVAGAEEEKQELVEVVEFLKDPRKFAALGARIPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKSAPSIIFIDEIDAVGRQRGAGMGGGHDEREQTLNQMLVEMDGFSGNEGVIVIAATNRSDVLDPALLRPGRFDRKILVGRPDVKGREAILKVHAKNKPLADDVDLKEIAQQTPGFVGADLENLLNEAALVAARRSKKDIDASDVDEAEDRVIAGPAKRDRVINPKERETVAYHEAGHAIIGLVLSDSRVVRKVTIVPRGRAGGYAIMLPKTDQFLMSKKELTEQMTGLMGGRTAEEIIFNSQSTGASNDFEQATDIARGMVTHYGMTEKLGTVALEKEGQPFVGAAYGQGPAFSEATAAAIDSEVRRLIDEAHQQATEIIQAHREQHKLIAEMLLKYETLNEKEILSLFNDGKMPEKNAEEFPSEKAATFEEAKKALEAKEAEKTDSELEAEQADSETTEVADDTADSKPTNDDSNDNA
>NZ_AP017929.1|WP_025015943.1|854735_855614_+|Hsp33-family-molecular-chaperone-HslO
MKDYLVKQVSEDGQLRAYAVNATQVVTEAQEKHDTWPTSSAAFGRTIVGTLLLSAAGLKGDTKMTVKVEGDGPVGKIVVDGNAQGTVKGYVTNPHVNLPSNEKNKIDVKAGVGTTGTLSVTKDLGLKEPFTGQVPLVSGELGEDFTYYLAKSEQTPSAVGVSVFVNEDSTIGVAGGFMIQILPGADDRLIDILEARLQEMPLVSELLQQGMTPEEIITEIVGELPMKTLEELPVKYECDCSKERFAKALSSIAPQDLKQLIEEDHGAEATCRFCGKQYQFSEADLKAILAEQ
>NZ_AP017929.1|WP_025015942.1|855697_856684_+|tRNA-dihydrouridine-synthase-DusB
MTWQIGDVTIPNQVVVAPMAGITNAAFRVTAKEFGAGLVVCEMISDRGIMHNNQKTMGMMFVDPNEHPVSIQIFGGSKDTLVEAAKFVDQHTQADIIDINMGCPVNKVVKTDAGARWLLDPNKVYEMVSYVTDAVKKPVTVKMRTGWDEDHILAVQNALAAERAGASALAMHGRTRKQMYTGKADWDILKQVKAELKIPFMGNGDVRTPQDAKRMLDEVGADAVMIGRAALGNPWILRQVETYLRSGELIAEPTPREKIATAKLQLHRLVELKGENVACREFRQQAAYYLKGIPRAAKTKAAVNEVETEQAVGDILDRFVEETEARMA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_AP017929_2	2.1\|843787\|38\|NZ_AP017929\|CRISPRCasFinder	843787-843824	38	NZ_AP017929.1	843661-843698	0	1.0

1. spacer 2.1|843787|38|NZ_AP017929|CRISPRCasFinder matches to position: 843661-843698, mismatch: 0, identity: 1.0

aattagagtgcttttagtgcttgtttagattttgagca	CRISPR spacer
aattagagtgcttttagtgcttgtttagattttgagca	Protospacer
**************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

428276 : 453321

Bacillus_phage(18.18%)

bacteriocin,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096695384.1\|428276_429206_+\|transposase	IS30-like element ISLpl1 family transposase	H7BW47	unidentified_phage	3.0e-25	34.4
WP_003680965.1\|429371_429821_-	cupin domain-containing protein	Q2I8C5	Bacillus_phage	6.8e-31	46.3
WP_025016527.1\|432032_432362_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_011373852.1\|432381_433302_-\|transposase	IS30-like element ISLsa1 family transposase	Q9MBM9	Staphylococcus_prophage	9.2e-51	38.2
WP_061827405.1\|433366_433588_-	hypothetical protein	NA	NA	NA	NA
WP_016265839.1\|433600_434125_-	GrpB family protein	A0A2K5B2B6	Erysipelothrix_phage	2.5e-16	33.3
WP_096695385.1\|434149_434419_-	hypothetical protein	NA	NA	NA	NA
WP_112234043.1\|434464_435534_-\|transposase	IS3-like element IS1163 family transposase	A0A1P8CWQ3	Bacillus_phage	1.4e-34	33.2
WP_157777015.1\|435584_435815_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_025016499.1\|435929_436505_-	recombinase family protein	A0A0A8WIK3	Clostridium_phage	4.2e-33	44.7
WP_133285957.1\|436944_438014_-\|transposase	IS3-like element IS1520 family transposase	Q6J1X2	Lactobacillus_phage	6.3e-27	34.9
WP_016265827.1\|438451_439114_-	beta-phosphoglucomutase	A7ITQ4	Paramecium_bursaria_Chlorella_virus	1.7e-09	25.8
WP_016265828.1\|439116_440136_-	aldose 1-epimerase	NA	NA	NA	NA
WP_096695387.1\|440205_442458_-	glycoside hydrolase family 65 protein	NA	NA	NA	NA
WP_016265830.1\|442478_443843_-	SLC45 family MFS transporter	NA	NA	NA	NA
WP_025016504.1\|443966_444920_-	LacI family DNA-binding transcriptional regulator	C6ZCU4	Enterobacteria_phage	7.9e-05	23.9
WP_025016521.1\|446283_447405_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA
WP_016265834.1\|447417_448194_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA
WP_016265835.1\|448207_449173_+	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_167372462.1\|450445_450637_-	hypothetical protein	NA	NA	NA	NA
WP_025016531.1\|450966_451527_+	hypothetical protein	NA	NA	NA	NA
WP_025016530.1\|451584_452034_-	DUF305 domain-containing protein	A0A1V0SJW0	Klosneuvirus	2.0e-06	33.1
WP_025016529.1\|452145_453321_-\|transposase	IS256 family transposase	A0A0N9STL0	Staphylococcus_phage	8.2e-28	29.2

DBSCAN-SWA_2

1171457 : 1179567

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016265359.1\|1171457_1171784_-	heavy metal-binding domain-containing protein	M4STD1	Rhodobacter_phage	2.4e-06	35.6
WP_025016401.1\|1171800_1172166_-	DUF1304 domain-containing protein	NA	NA	NA	NA
WP_011374975.1\|1172251_1173244_-	UDP-glucose 4-epimerase GalE	A0A1V0SG19	Hokovirus	1.3e-47	36.6
WP_025016402.1\|1173388_1175701_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	3.8e-77	30.9
WP_011374973.1\|1175724_1176243_+	adenine phosphoribosyltransferase	A0A2K9L2N8	Tupanvirus	5.6e-13	32.2
WP_011374972.1\|1176377_1176992_-	transcriptional repressor LexA	A0A1B2APZ1	Phage_Wrath	1.1e-15	58.2
WP_025016405.1\|1177126_1177369_+	DUF896 domain-containing protein	NA	NA	NA	NA
WP_011374970.1\|1177449_1177680_+	YneF family protein	NA	NA	NA	NA
WP_025016406.1\|1177821_1179567_+	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	1.2e-46	27.7

DBSCAN-SWA_3

1262556 : 1271301

Acanthocystis_turfacea_Chlorella_virus(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016265287.1\|1262556_1263276_+	aquaporin family protein	M1HCP3	Acanthocystis_turfacea_Chlorella_virus	2.9e-28	34.1
WP_025016367.1\|1263626_1265000_+	glycoside hydrolase family 1 protein	A0A0B5JD41	Pandoravirus	1.7e-45	30.4
WP_011374866.1\|1265051_1265531_-	nucleoside 2-deoxyribosyltransferase	A0A1D3SPR3	Enterococcus_phage	3.8e-16	37.2
WP_011374865.1\|1265663_1265837_-	hypothetical protein	NA	NA	NA	NA
WP_016265285.1\|1265994_1268037_+	KUP/HAK/KT family potassium transporter	M1IAJ4	Acanthocystis_turfacea_Chlorella_virus	3.0e-70	35.7
WP_096695396.1\|1268277_1268964_+	LysM peptidoglycan-binding domain-containing protein	A0A096XT26	Enterococcus_phage	2.2e-17	40.9
WP_035144976.1\|1268990_1269365_+	hypothetical protein	NA	NA	NA	NA
WP_051524308.1\|1269384_1269630_+	hypothetical protein	NA	NA	NA	NA
WP_025016522.1\|1269629_1270934_+	Y-family DNA polymerase	Q6DMX4	Streptococcus_phage	6.2e-85	39.7
WP_016265282.1\|1270926_1271301_+	hypothetical protein	E3W8I0	Leuconostoc_phage	4.1e-05	41.9

DBSCAN-SWA_4

1424751 : 1432781

Staphylococcus_phage(28.57%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025015763.1\|1424751_1425360_+	lytic polysaccharide monooxygenase	A0A0K1Y848	Apis_mellifera_filamentous_virus	1.0e-13	30.0
WP_025015764.1\|1425460_1426333_-	YitT family protein	M1Q1P6	Streptococcus_phage	4.8e-57	41.5
WP_025015765.1\|1426480_1427674_+\|tRNA	CCA tRNA nucleotidyltransferase	A0A249XS88	Mycobacterium_phage	1.3e-33	33.0
WP_011374705.1\|1427742_1428204_+	hypothetical protein	NA	NA	NA	NA
WP_056936411.1\|1428316_1430206_+	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	2.3e-48	29.3
WP_025015766.1\|1430277_1431228_+	thymidylate synthase	A0A0N9SH48	Staphylococcus_phage	7.9e-122	64.0
WP_025015767.1\|1431238_1431739_+	dihydrofolate reductase	G3MBI7	Bacillus_virus	3.5e-28	38.7
WP_025015768.1\|1431935_1432781_+	DegV family protein	A0A0N9SI50	Staphylococcus_phage	7.7e-20	44.2

DBSCAN-SWA_5

1870549 : 1880168

Streptococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025016310.1\|1870549_1871131_+	glycoside hydrolase family 73 protein	A0A0A7RUS8	Clostridium_phage	8.8e-23	44.0
WP_025016311.1\|1871674_1872259_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	1.5e-51	53.4
WP_025016312.1\|1872483_1873008_+	DsbA family protein	NA	NA	NA	NA
WP_025016313.1\|1873122_1873578_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_011374236.1\|1873669_1874614_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	2.3e-52	39.0
WP_016264749.1\|1874616_1875651_-	YvcK family protein	A1IMD5	Streptococcus_phage	9.0e-95	54.8
WP_011374234.1\|1875647_1876532_-	RNase adapter RapZ	A0A1P8D5W0	Corynebacterium_phage	8.4e-09	31.0
WP_016264747.1\|1876657_1877194_-	DUF308 domain-containing protein	NA	NA	NA	NA
WP_056936480.1\|1877315_1880168_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	1.3e-305	54.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_AP017929

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection