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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP023498 Burkholderia thailandensis strain FDAARGOS_426 chromosome 2, complete sequence 0 crisprs csa3,cas3,DinG 0 0 1 0
NZ_CP023499 Burkholderia thailandensis strain FDAARGOS_426 chromosome 1, complete sequence 1 crisprs csa3,WYL,cas3,DEDDh,DinG 0 1 7 0

Results visualization

1. NZ_CP023498
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 734082 : 763211 26 Escherichia_phage(50.0%) plate,holin NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP023499
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP023499_1 3808031-3808224 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP023499_1 1.2|3808177|30|NZ_CP023499|PILER-CR 3808177-3808206 30 KT221034 Streptomyces phage SF3, complete genome 17567-17596 6 0.8
NZ_CP023499_1 1.2|3808177|30|NZ_CP023499|PILER-CR 3808177-3808206 30 KT221033 Streptomyces phage SF1, complete genome 35267-35296 6 0.8
NZ_CP023499_1 1.2|3808177|30|NZ_CP023499|PILER-CR 3808177-3808206 30 NZ_CP043441 Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence 1318119-1318148 6 0.8
NZ_CP023499_1 1.2|3808177|30|NZ_CP023499|PILER-CR 3808177-3808206 30 NZ_AP022593 Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence 786403-786432 6 0.8
NZ_CP023499_1 1.2|3808177|30|NZ_CP023499|PILER-CR 3808177-3808206 30 NZ_LR594673 Variovorax sp. PBL-E5 plasmid 3 466158-466187 6 0.8
NZ_CP023499_1 1.2|3808177|30|NZ_CP023499|PILER-CR 3808177-3808206 30 NC_015727 Cupriavidus necator N-1 plasmid pBB1, complete sequence 232270-232299 7 0.767
NZ_CP023499_1 1.2|3808177|30|NZ_CP023499|PILER-CR 3808177-3808206 30 NC_015724 Cupriavidus necator N-1 plasmid pBB2, complete sequence 158018-158047 7 0.767
NZ_CP023499_1 1.2|3808177|30|NZ_CP023499|PILER-CR 3808177-3808206 30 MH727550 Corynebacterium phage Juicebox, complete genome 16187-16216 7 0.767
NZ_CP023499_1 1.2|3808177|30|NZ_CP023499|PILER-CR 3808177-3808206 30 NC_024970 Streptomyces aureofaciens strain CCM3239 plasmid pSA3239, complete sequence 119078-119107 8 0.733
NZ_CP023499_1 1.2|3808177|30|NZ_CP023499|PILER-CR 3808177-3808206 30 NZ_KJ396772 Streptomyces lavendulae subsp. lavendulae strain CCM3239 plasmid pSA3239, complete sequence 119078-119107 8 0.733
NZ_CP023499_1 1.2|3808177|30|NZ_CP023499|PILER-CR 3808177-3808206 30 NZ_CP024986 Streptomyces lavendulae subsp. lavendulae strain CCM 3239 plasmid pSA3239, complete sequence 121970-121999 8 0.733
NZ_CP023499_1 1.2|3808177|30|NZ_CP023499|PILER-CR 3808177-3808206 30 NZ_CP021004 Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6166 plasmid pE, complete sequence 33294-33323 8 0.733

1. spacer 1.2|3808177|30|NZ_CP023499|PILER-CR matches to KT221034 (Streptomyces phage SF3, complete genome) position: , mismatch: 6, identity: 0.8

cacgggtgcgctctcgggcgccgcgggcag	CRISPR spacer
gcggggcgcgctctcgcgcgccgcgggcgg	Protospacer
   ***.********* ***********.*

2. spacer 1.2|3808177|30|NZ_CP023499|PILER-CR matches to KT221033 (Streptomyces phage SF1, complete genome) position: , mismatch: 6, identity: 0.8

cacgggtgcgctctcgggcgccgcgggcag	CRISPR spacer
gcggggcgcgctctcgcgcgccgcgggcgg	Protospacer
   ***.********* ***********.*

3. spacer 1.2|3808177|30|NZ_CP023499|PILER-CR matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

cacgggtgcgctctcgggcgccgcgggcag	CRISPR spacer
cacgggtgcgctcgcgggcgccaagtgcga	Protospacer
************* ********. * **..

4. spacer 1.2|3808177|30|NZ_CP023499|PILER-CR matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 6, identity: 0.8

-cacgggtgcgctctcgggcgccgcgggcag	CRISPR spacer
ctacctgt-cgctctcgcgcgccgcgggcac	Protospacer
 .**  ** ******** ************ 

5. spacer 1.2|3808177|30|NZ_CP023499|PILER-CR matches to NZ_LR594673 (Variovorax sp. PBL-E5 plasmid 3) position: , mismatch: 6, identity: 0.8

cacgggtgcgctctcgggcgccg---cgggcag	CRISPR spacer
gacggctgcgctctcgggcgccatctcggg---	Protospacer
 **** ****************.   ****   

6. spacer 1.2|3808177|30|NZ_CP023499|PILER-CR matches to NC_015727 (Cupriavidus necator N-1 plasmid pBB1, complete sequence) position: , mismatch: 7, identity: 0.767

cacgggtgcgctctcgggcgccgcgggcag	CRISPR spacer
gccgccggcgctctccggcgccgccggcag	Protospacer
  **   ******** ******** *****

7. spacer 1.2|3808177|30|NZ_CP023499|PILER-CR matches to NC_015724 (Cupriavidus necator N-1 plasmid pBB2, complete sequence) position: , mismatch: 7, identity: 0.767

cacgggtgcgctctcgggcgccgcgggcag	CRISPR spacer
gccgcccgcgctctccggcgccgccggcag	Protospacer
  **  .******** ******** *****

8. spacer 1.2|3808177|30|NZ_CP023499|PILER-CR matches to MH727550 (Corynebacterium phage Juicebox, complete genome) position: , mismatch: 7, identity: 0.767

cacgggtgcgctctcgggcgccgcgggcag	CRISPR spacer
gaaggccgcggtctcgggcgccgcgggccc	Protospacer
 * ** .*** *****************  

9. spacer 1.2|3808177|30|NZ_CP023499|PILER-CR matches to NC_024970 (Streptomyces aureofaciens strain CCM3239 plasmid pSA3239, complete sequence) position: , mismatch: 8, identity: 0.733

cacgggtgcgctctcgggcgccgcgggcag	CRISPR spacer
cgcgggtgcggtctcggtcgccgcgtcggt	Protospacer
*.******** ****** *******   . 

10. spacer 1.2|3808177|30|NZ_CP023499|PILER-CR matches to NZ_KJ396772 (Streptomyces lavendulae subsp. lavendulae strain CCM3239 plasmid pSA3239, complete sequence) position: , mismatch: 8, identity: 0.733

cacgggtgcgctctcgggcgccgcgggcag	CRISPR spacer
cgcgggtgcggtctcggtcgccgcgtcggt	Protospacer
*.******** ****** *******   . 

11. spacer 1.2|3808177|30|NZ_CP023499|PILER-CR matches to NZ_CP024986 (Streptomyces lavendulae subsp. lavendulae strain CCM 3239 plasmid pSA3239, complete sequence) position: , mismatch: 8, identity: 0.733

cacgggtgcgctctcgggcgccgcgggcag	CRISPR spacer
cgcgggtgcggtctcggtcgccgcgtcggt	Protospacer
*.******** ****** *******   . 

12. spacer 1.2|3808177|30|NZ_CP023499|PILER-CR matches to NZ_CP021004 (Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6166 plasmid pE, complete sequence) position: , mismatch: 8, identity: 0.733

cacgggtgcgctctcgggcgccgcgggcag	CRISPR spacer
taagggtgcgctctcggccgctgcggtggc	Protospacer
.* ************** ***.****  . 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 532476 : 543386 9 Agrobacterium_phage(16.67%) protease NA
DBSCAN-SWA_2 1543269 : 1551374 8 Burkholderia_virus(50.0%) plate,portal NA
DBSCAN-SWA_3 1777631 : 1823619 42 Liberibacter_phage(40.0%) integrase,protease,plate,transposase attL 1773441:1773458|attR 1827000:1827017
DBSCAN-SWA_4 2136053 : 2145228 7 Hokovirus(16.67%) NA NA
DBSCAN-SWA_5 2501822 : 2510257 8 Bacillus_phage(16.67%) NA NA
DBSCAN-SWA_6 2933868 : 3035552 107 Ralstonia_phage(28.21%) integrase,portal,head,capsid,protease,terminase,tRNA,tail attL 2974554:2974581|attR 3021891:3021918
DBSCAN-SWA_7 3413930 : 3456346 54 Burkholderia_virus(54.35%) portal,plate,capsid,head,holin,transposase,terminase,tail,lysis NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage