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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP010789 Phaeobacter gallaeciensis strain P63 plasmid pP63_e, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP010788 Phaeobacter gallaeciensis strain P63 plasmid pP63_d, complete sequence 0 crisprs csa3 0 0 0 0
NZ_CP010784 Phaeobacter gallaeciensis strain P63 chromosome, complete genome 1 crisprs csa3,WYL,casR,DEDDh,cas3 2 1 5 1
NZ_CP010787 Phaeobacter gallaeciensis strain P63 plasmid pP63_c, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP010790 Phaeobacter gallaeciensis strain P63 plasmid pP63_f, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP010786 Phaeobacter gallaeciensis strain P63 plasmid pP63_b, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP010791 Phaeobacter gallaeciensis strain P63 plasmid pP63_x_draft, complete sequence 0 crisprs NA 0 0 1 0
NZ_CP010785 Phaeobacter gallaeciensis strain P63 plasmid pP63_a, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP010784
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010784_1 2302328-2302500 Orphan NA
3 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP010784_1 1.1|2302357|19|NZ_CP010784|CRISPRCasFinder 2302357-2302375 19 NZ_CP010784.1 2302489-2302507 1 0.947
NZ_CP010784_1 1.2|2302405|19|NZ_CP010784|CRISPRCasFinder 2302405-2302423 19 NZ_CP010784.1 403244-403262 2 0.895

1. spacer 1.1|2302357|19|NZ_CP010784|CRISPRCasFinder matches to position: 2302489-2302507, mismatch: 1, identity: 0.947

acgggacgccgcacgggac	CRISPR spacer
acgggccgccgcacgggac	Protospacer
***** *************

2. spacer 1.2|2302405|19|NZ_CP010784|CRISPRCasFinder matches to position: 403244-403262, mismatch: 2, identity: 0.895

atgggccgccgccggagct	CRISPR spacer
atgggccgccgccagcgct	Protospacer
*************.* ***

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP010784_1 1.1|2302357|19|NZ_CP010784|CRISPRCasFinder 2302357-2302375 19 NC_023549 Clavibacter phage CN1A, complete genome 5375-5393 0 1.0

1. spacer 1.1|2302357|19|NZ_CP010784|CRISPRCasFinder matches to NC_023549 (Clavibacter phage CN1A, complete genome) position: , mismatch: 0, identity: 1.0

acgggacgccgcacgggac	CRISPR spacer
acgggacgccgcacgggac	Protospacer
*******************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1145116 : 1199722 52 Acinetobacter_phage(14.29%) lysis,transposase,integrase,tRNA attL 1137941:1137957|attR 1190027:1190043
DBSCAN-SWA_2 1509493 : 1577101 65 uncultured_Mediterranean_phage(22.22%) tail,tRNA,capsid,portal,protease,head NA
DBSCAN-SWA_3 1777840 : 1805804 42 Ruegeria_phage(23.53%) tail,terminase,capsid,integrase,portal,protease,head attL 1771034:1771048|attR 1792994:1793008
DBSCAN-SWA_4 2284705 : 2295553 14 Vibrio_phage(33.33%) terminase,coat NA
DBSCAN-SWA_5 2299292 : 2302579 7 Pseudoalteromonas_phage(16.67%) NA NA
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Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP010784.1|WP_024097689.1|2300654_2300843_+|hypothetical-protein 2300654_2300843_+ 62 aa aa NA NA NA 2299292-2302579 yes
2. NZ_CP010791
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 111138 : 160097 47 Vibrio_phage(33.33%) integrase,transposase attL 112774:112833|attR 154177:154322
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage