CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP023546	Campylobacter coli strain CFSAN032805 plasmid pCFSAN032805_1, complete sequence	1 crisprs	NA	2	5
NZ_CP023547	Campylobacter coli strain CFSAN032805 plasmid pCFSAN032805_2, complete sequence	1 crisprs	NA	1	0
NZ_CP023545	Campylobacter coli strain CFSAN032805 chromosome, complete genome	0 crisprs	csa3,cas14j,DEDDh	0	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP023546_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023546_1

2932-3129

Orphan

Consensus_repeat	Method
TTTTCAAATAAAATTGACTTTAATGTAAT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP023546_1

>merge|NZ_CP023546|1|2932-3129|CRISPRCasFinder
TTTTCAAATAAAATTGACTTTAATGTAATATGCACTTACATTAAAGTCAACAAAAATTGCTAAATGCTCCTCTTATTTTCAAATAAAATTGACTTAAATGTAATGATTTTTGACTTAAATGTAATGATTTTTGACATTTTTACGAAAATAACATATGGAAAATAGGGACTTTAAAAAAACAATTGACTTAAATGTAAT

>NZ_CP023546|1|1|2932-3129|CRISPRCasFinder
TTTTCAAATAAAATTGACTTTAATGTAAT	ATGCACTTACATTAAAGTCAACAAAAATTGCTAAATGCTCCTCTTA
TTTTCAAATAAAATTGACTTAAATGTAAT	GATTTTTGACTTAAATGTAATGATTTTTGACATTTTTACGAAAATAACATATGGAAAATAGGGAC
TTTAAAAAAACAATTGACTTAAATGTAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023546.1\|WP_021034330.1\|7154_7706_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023546.1\|WP_002790340.1\|2398_2602_-\|addiction-module-toxin,-HicA-family	unknown	unknown	gnl\|CDD\|224638
NZ_CP023546.1\|WP_002801489.1\|7705_9094_+\|relaxase/mobilization-nuclease-domain-containing-protein	unknown	unknown	gnl\|CDD\|367497
NZ_CP023546.1\|WP_021083573.1\|5378_6038_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023546.1\|WP_057031734.1\|6679_6961_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023546.1\|WP_079275893.1\|10694_16490_-\|DEAD/DEAH-box-helicase-family-protein	unknown	unknown	gnl\|CDD\|226993
NZ_CP023546.1\|WP_021034322.1\|3658_3952_-\|EexN-family-lipoprotein	unknown	unknown	unknown
NZ_CP023546.1\|WP_002823208.1\|16536_16803_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023546.1\|WP_002823273.1\|3304_3580_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023546.1\|WP_031263757.1\|9829_10441_-\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350289
NZ_CP023546.1\|WP_002790342.1\|601_2395_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|238545
NZ_CP023546.1\|WP_002801148.1\|2594_2813_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|224514
NZ_CP023546.1\|WP_002823310.1\|4069_5296_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226990

Protein	Function_ID	Function_description	E-value
NZ_CP023546.1\|WP_031263757.1\|9829_10441_-\|NYN-domain-containing-protein	gnl\|CDD\|350289	cd18722, PIN_NicB-like, LabA-like PIN domain of Pseudomonas putida S16 NicB and related proteins. Curiously NicB from Pseudomonas putida S16 is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine. This subfamily also includes the uncharacterized CPP15 (plasmid) protein from Campylobacter jejuni. This subfamily belongs to LabA-like PIN domain family which includes Synechococcus elongatus PCC 7942 LabA, human ZNF451, uncharacterized Bacillus subtilis YqxD and Escherichia coli YaiI, and the N-terminal domain of a well-conserved group of mainly bacterial proteins with no defined function, which contain a C-terminal LabA_like_C domain. Curiously, a gene labeled NicB from Pseudomonas putida S16, which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls into the LabA-like PIN family. The PIN (PilT N terminus) domain belongs to a large nuclease superfamily. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	9.67711e-26
NZ_CP023546.1\|WP_079275893.1\|10694_16490_-\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|226993	COG4646, COG4646, DNA methylase [Transcription / DNA replication, recombination, and repair].	1.99633e-71
NZ_CP023546.1\|WP_002823310.1\|4069_5296_-\|hypothetical-protein	gnl\|CDD\|226990	COG4643, COG4643, Uncharacterized protein conserved in bacteria [Function unknown].	1.3304e-26
NZ_CP023546.1\|WP_002790340.1\|2398_2602_-\|addiction-module-toxin,-HicA-family	gnl\|CDD\|224638	COG1724, COG1724, Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only].	6.85308e-14
NZ_CP023546.1\|WP_002790342.1\|601_2395_-\|AAA-family-ATPase	gnl\|CDD\|238545	cd01125, repA, Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.	6.71147e-14
NZ_CP023546.1\|WP_002801148.1\|2594_2813_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|224514	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	2.74784e-11
NZ_CP023546.1\|WP_002801489.1\|7705_9094_+\|relaxase/mobilization-nuclease-domain-containing-protein	gnl\|CDD\|367497	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain. Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalyzing trans-esterification.	4.91898e-05

>NZ_CP023546.1|WP_002801148.1|2594_2813_-|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MLLNIIIEKDQDGYFARILELEGCVSQGNTYEEALVNIKEAGELYLESLANEEKRIIENKTTSIIPMVLANA
>NZ_CP023546.1|WP_002790340.1|2398_2602_-|addiction-module-toxin,-HicA-family
MPELPRMTAKEAEKLLLQNDFSIDRQKGSHRIYKKGLYRMVIPHHSGEILHPKIIKQLFEIIEVAKD
>NZ_CP023546.1|WP_002790342.1|601_2395_-|AAA-family-ATPase
MPKRNTIETITLGLFSDEDVSIICEDTIKLERGSVAVLSGNSEVGKSFLALKVCANAINDGLKPFFWSVEDKNKAILERIKNIESFYSFNTAELEFSNELPKINKEPINCLKEELNELADCDLIVLDTFSAFFSTLGFKDQNNQNDVQNFFNILTDIAKSNNQAILLLHHLDKKGESLMGSSVIINAPRLVYKLSFEKGEDKNSTTYRLLEVLKDNNNINAGEFQKTIKVLQNSSIDEPSIVNLRANSIDSNTLEIINKKDISAVSVNELAKGYVTMNENRGVFYLSSRKLTDTNFYKVFKENDNKIDFKMTGANGSSYAISLKNSLLTQTHRNILDALFLYIKKNVDTSVIKKYQENFWDMEVRLEPYKFLKQYLNKNSNNYSWLKQKFTEISRFAYDLAFTQNVEDKDKKTITQRDKGILMFDSVERITKENGTIVSVFVLTVRREYIKKLETESTLSYDDDLSKILINLNSLVAQDLIRFLTSFPDKKILSYSEFCEIKAYKFYKENSIISRQKKEIIKLKDKLIEFGINIYGKGVEFADYDDEFFHNKYKNENDLFFIYQSNNKVKRYIKRDDPMNQLNTKDNRFLLQKSLFD
>NZ_CP023546.1|WP_002823273.1|3304_3580_+|hypothetical-protein
MCKIIKYLDYARLNTLEKLYFDLTIMLIVTFLSFLFLVFEFFIYENIAVFFQDCFLMSVIFIIGMIGLFHTCKGLRKYKEILKSNKREEFI
>NZ_CP023546.1|WP_021034322.1|3658_3952_-|EexN-family-lipoprotein
MKNTIKLALLGAVITGVFSACSSEPKTVQYYEDPKNATELEAKIKECDKNANSAKTDTECANAYEARYSKSFDYKPQVSTKELMQKAREQNKNMELK
>NZ_CP023546.1|WP_002823310.1|4069_5296_-|hypothetical-protein
MPQKRIYLYVPFKDKEKAKSLGAMWDDKEKKWFAPKTLDKNIFSQWLYPHQKKEFSFDENEVLTAFKSALENQGLIIEGLPIMDGKIHRVKTTNDKGRELSGAYSGFLDDYPAGFVQNFKTGIKENWKMPIEKNQSNNIKNSQKLHEQIKKDQELREKEILTLQEKTALKLEDEYNNAKWANSNHAYLKKKGFDENFYLKQDKMGSLLIPLKDENGKLWSVQRIFPNGDKIIGVIKTQEEKDQGVEYLAKKQGCFHIIGAKTLHNLKEFYICEGFATAATIYKALNKPVIMGVDAGNLSKIVETLKNKFENTPITLIADNDKKRELKGLSNVGVETAKEIQQRFSDIKVIIPKISDQEAGQGVSDFNDIFLNKGLDEVKKQLNFIDFHNKLKAFKSMEKTQPEKEITR
>NZ_CP023546.1|WP_021083573.1|5378_6038_-|hypothetical-protein
MNNTINFNELFSQIRLYSYDNNIVKHYDNLKLVGKITPKIATLEIILRNKLDNKLSEQDSNWIKNSNDENIKKAKDEIEKREKNRILSHHQYLSRISLGTIIYLIKENRMQDSIMNLKNINFRNYNQYNRNFFLKNGKKRNFGNIYKVDIVLSLLQNLRNRSYHWENILKTTEKNSKHYPRLTTKIENVYIGINPQKIELFLDDLIKTFDERILKYCQD
>NZ_CP023546.1|WP_057031734.1|6679_6961_-|hypothetical-protein
MLKESKLIEELKREYDEKLKKLRQKEKENKERIFKKFSSALFKDFEINEDFKNEFNLLVEKFDCKNTKNILDKINNLYDFNHRNDKIDTAKKQ
>NZ_CP023546.1|WP_021034330.1|7154_7706_+|hypothetical-protein
MNKNNNCVIKVSKDDKIILEYIKSETNASYSKIISILLKKFNSCDTDEKNKINDEICKNKFYTSDENKIIKLKLTENEVNILKEISKNTGFSSITKQAKFLLLNSIKNEKLFTNIEIDEFIKTRTEINAIGKNIYQLLKILRSGNSVKINENNLNKTMDNIRDKIDILSDQLGAIIEKNNERI
>NZ_CP023546.1|WP_002801489.1|7705_9094_+|relaxase/mobilization-nuclease-domain-containing-protein
MSRSIRIFDDEIIAKKVFTKIENASKLPLNYINKNRDKYTKDIKTGKLISKNMFRKNTEVVVKITSGSKNSQALSKHLDYISRDGNVELITNDFDRYAGEDEILEVKRIFKNEGSPIPLYKEGAKEKRHTINMVFSMKEHSTTPKEKLQQAVITTLKRMYPNNFFVVAFHNDTDNPHCHVCLKVADKNGKRINPKKADLANLRAEFAKALNELGVEAKATNKKQREVEINQEFSVKLNANNEINQAPKIKMHYYQVMDFGEANYQFSTDKNAKKSYYVSYKTKKGITTIWGQDLERVVRENKVLRGEYARFKIVGQEEYEIKRKAKINNKWQEVVKTLKKPIWEVSVIGREKDLKQINKAKTTKKYKIIQDKGVNNERDYTKQYRQRVLQELGNKSTIRRETAQERNSMRILSKQPMVHNTKRTQMLLHINALNQLQQGERGRSDNILRWTSARNNEIKRDG
>NZ_CP023546.1|WP_031263757.1|9829_10441_-|NYN-domain-containing-protein
MEAKELAKRLKDYVWETLRRNEDYLHRVYIYDCEPLDKNVPMPPIEKTDKSKNLSKTTTYKFRSELLNHLRKQPYFAVRLGEIDENSFQWKFRDYDKFRKILRKEIDICELTSEDFVLDIKQKGVDMKIGLDIATLANKHHAEKIILITADSDFIPAVKHARKEGIIVQLDPMRIPETQIKKGLLEHIDILSSVFINKNKNGN
>NZ_CP023546.1|WP_079275893.1|10694_16490_-|DEAD/DEAH-box-helicase-family-protein
MSKKTKRQIEDEKDYGGRSLFDLIELEFSQGEENEQQNRELSEHREVTDNIERTSISSNTPSVDRQENSAIQFDNTREMGRVLSEHNQESRNVRSHDTSITTSSNGISNFGEQRSEQEERSGANRYGDTSGRADKSQSIHSNRTPNLFSFISRNDDERQGTGTRRDNQQSVLETATRNDGYERRSLKSGQKLDFVSDDEIYLGSLKDRFQKNLQAIKLSKTIEQENRYATKQEQEILNKFSGWGGIPQAFDHQNKEWEKEFKELISTLDYVEYEKAKTSTLDAFYTPKIIIDTIYQGLNQLGFNNDGHTKEIFEPSAGIGSFLSYAKNYSDKYHFTCVELDTISANILKHLHPNQTIYNKAFQHHLFDKPYDAFIGNPPFGQKKILDLNDTTLNKTSVHNYFIGNAIKNLKEDGIAAFVVSSYFLDSKNSTIRNYIAEQATFLGAVRLPNNAFKKRANTEVTTDIIFFKKGKDLNIDKSWLESVEYYDDRFDEAEKRGMHPDVFNDFRINEYFKNNPQNILGKMNIKSSQYGYSLECLDDGRDLKIALENFTKTLPKNIYKYQETKIKLSYYRIDRESPEYEKYSKTLSKLKDGNYFEYNNEIYMKIRSDDELVFSKPVLNEHDTRRIKKLIALRDQFNTLIEYEKNESSDLLVENQRKYLNKLYDEFVAKEGYLNRDANKKAFREDVEANKILALEKNYSSGISKSVALKEGIDPIAPSATKADIFFKRTINAQKEIKISTPKEALIASINEYGRIDLKFLETNLNQPLEETLKSLEQDKLIFKDHKNPANYVLAEKYLSGNVKAKHKEVKKLVEDGFNEFVNNLESLEQVLPKDLKAVDISISLGTTWIPIKYYKQFIEETLQITPKDYDLFLMEKTGEWSLKGFGHSLSPYIRSQYATEKIGCFDLFEHGLLRKPIRIYDKKLDPSGKEIRELNPKETAIANSKLENLKNEFIEWIYKDYDRRTDLENIYNERFNTNIEPQYNGEHLELPNFNANIKLKKHQKNAIYRAIQENSIIFDHQVGAGKTLVAICSVMEQKRMGLLNKPLIVVPNHLARQWNDEFYHAYTNANILVATNDDLKKDNREKFFSKITTNNFDAIIMTHSQFKLIPAPYEVIKKQYEEDINILEQTLEKKQNDDNVMRYSVKDLEKRIENFKVKLSDLQTTHKKSKAIDFSELGIDALIIDEAHEFKNLLITTSMGDISGLGNLKGSQKAYDLYSKTQYIHEQNKKLYFLTGTPISNSITELYTLQRYIQPNILKEKGIQAFDSWASTFGEVTNAWELDSSGINYKIVARFNKFKNVPELSTMYKSVADIVTNNDIMKYQKDFVPKLYNDKPINIVAPRSEEIAEFIGIQDENGRWNEGSIVWRMEHQQDDITRNNLLACTTDARKAGLDFRLINPHCDDYANSKINKLIENVFNEYNAWNDDKGTQLIFCDLSTPKQHSQKVALNGNIATPNLNKEEFVNINETIEQTEEENSKSLDELLAEQAKFDVYTDILKKLVAKGIPQNEIRFIHDAKTDLQKGQLFADMNSGKARILIGSTQKMGAGTNVQKRIVALHHLDCPWRPSDLEQRSGRVIRQGNELFMRDPQNFRVKEFRYATERTYDARMWQVIESKARSIEQFRKAGADVRTLEDVTSGAADAAEMKAEATGNPLILLQVQLNSDLRQEEMLYSGYKRQIHNNEESLITNLSKIELLKKDIAKMEILNSIIKENNSEHFQGKYYINDDEKDFIVFKNDTSDLNKSRQAELERNFEKIVKTIADDYQKEYKVLEFKGLLISGERTDLNTLNFYVSTTDGKTIIEPENLIYKRDEKTFFKLESYVNFGGFVKRLNNFYNDLEKFTQLNKNKIENLEKEIVELKSITGDNTPKYKRKDYLEALREDNRIIMDEIEKMSKQKNYKSDFVPKSAKILEDLNKHNKILKDRELLI
>NZ_CP023546.1|WP_002823208.1|16536_16803_-|hypothetical-protein
MEKKPFTIAEALNSETSSQKTFKKADKKSAGRKTIDQKLRRDNLVVCRLNEQEMEILKKLMDLDLVSEYGTYIRKLILKEARALNINS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP023546_1	1.1\|2961\|46\|NZ_CP023546\|CRISPRCasFinder	2961-3006	46	NZ_CP045793	Campylobacter coli strain CFSAN032805 plasmid p1CFSAN032805, complete sequence	2389-2434	0	1.0
NZ_CP023546_1	1.1\|2961\|46\|NZ_CP023546\|CRISPRCasFinder	2961-3006	46	NC_017282	Campylobacter jejuni subsp. jejuni S3 plasmid pTet, complete sequence	32980-33025	0	1.0
NZ_CP023546_1	1.1\|2961\|46\|NZ_CP023546\|CRISPRCasFinder	2961-3006	46	NZ_CP023546	Campylobacter coli strain CFSAN032805 plasmid pCFSAN032805_1, complete sequence	2961-3006	0	1.0
NZ_CP023546_1	1.1\|2961\|46\|NZ_CP023546\|CRISPRCasFinder	2961-3006	46	NZ_CP017026	Campylobacter coli plasmid pCC14983A-1, complete sequence	77761-77806	0	1.0
NZ_CP023546_1	1.1\|2961\|46\|NZ_CP023546\|CRISPRCasFinder	2961-3006	46	NZ_CP011017	Campylobacter coli strain FB1 plasmid pFB1TET, complete sequence	25106-25151	0	1.0
NZ_CP023546_1	1.1\|2961\|46\|NZ_CP023546\|CRISPRCasFinder	2961-3006	46	NZ_CP017861	Campylobacter jejuni strain TS1218 plasmid pCJDM218, complete sequence	10897-10942	0	1.0
NZ_CP023546_1	1.1\|2961\|46\|NZ_CP023546\|CRISPRCasFinder	2961-3006	46	NZ_CP043764	Campylobacter jejuni strain BfR-CA-14430 plasmid pBfR-CA-14430, complete sequence	30321-30366	0	1.0
NZ_CP023546_1	1.1\|2961\|46\|NZ_CP023546\|CRISPRCasFinder	2961-3006	46	NZ_CP048762	Campylobacter jejuni strain ZS004 plasmid pCJFEX, complete sequence	17509-17554	0	1.0
NZ_CP023546_1	1.1\|2961\|46\|NZ_CP023546\|CRISPRCasFinder	2961-3006	46	NZ_MK541988	Campylobacter coli strain CVM N61740F plasmid pN61740F, complete sequence	9258-9303	0	1.0
NZ_CP023546_1	1.1\|2961\|46\|NZ_CP023546\|CRISPRCasFinder	2961-3006	46	NZ_MK541989	Campylobacter coli strain CVM N61925F plasmid pN61925F, complete sequence	33043-33088	0	1.0
NZ_CP023546_1	1.1\|2961\|46\|NZ_CP023546\|CRISPRCasFinder	2961-3006	46	NC_022354	Campylobacter jejuni subsp. jejuni 00-2544 plasmid unnamed, complete sequence	34673-34718	0	1.0
NZ_CP023546_1	1.1\|2961\|46\|NZ_CP023546\|CRISPRCasFinder	2961-3006	46	NZ_KX686749	Campylobacter coli strain Tx40 plasmid unnamed, complete sequence	16640-16685	0	1.0
NZ_CP023546_1	1.1\|2961\|46\|NZ_CP023546\|CRISPRCasFinder	2961-3006	46	NZ_CP007182	Campylobacter coli RM4661 plasmid pRM4661_48kbp, complete sequence	17180-17225	0	1.0
NZ_CP023546_1	1.1\|2961\|46\|NZ_CP023546\|CRISPRCasFinder	2961-3006	46	NC_006134	Campylobacter coli plasmid pCC31, complete sequence	21012-21057	0	1.0
NZ_CP023546_1	1.1\|2961\|46\|NZ_CP023546\|CRISPRCasFinder	2961-3006	46	NZ_CP007180	Campylobacter coli RM5611 plasmid pRM5611_48kb, complete sequence	20376-20421	0	1.0
NZ_CP023546_1	1.1\|2961\|46\|NZ_CP023546\|CRISPRCasFinder	2961-3006	46	NZ_CP023544	Campylobacter jejuni strain CFSAN032806 plasmid pCFSAN032806, complete sequence	18213-18258	0	1.0
NZ_CP023546_1	1.1\|2961\|46\|NZ_CP023546\|CRISPRCasFinder	2961-3006	46	NZ_CP017418	Campylobacter jejuni strain MTVDSCj13 plasmid pMTVDSCj13-1, complete sequence	13201-13246	0	1.0
NZ_CP023546_1	1.1\|2961\|46\|NZ_CP023546\|CRISPRCasFinder	2961-3006	46	NZ_CP017419	Campylobacter jejuni strain MTVDSCj16 plasmid pMTVDSCj16-1, complete sequence	13227-13272	0	1.0
NZ_CP023546_1	1.1\|2961\|46\|NZ_CP023546\|CRISPRCasFinder	2961-3006	46	NZ_CP017866	Campylobacter coli strain YF2105 plasmid pCCDM105L, complete sequence	41074-41119	0	1.0
NZ_CP023546_1	1.1\|2961\|46\|NZ_CP023546\|CRISPRCasFinder	2961-3006	46	NZ_CP017879	Campylobacter coli strain BG2108 plasmid pCCDM108L, complete sequence	4338-4383	0	1.0
NZ_CP023546_1	1.1\|2961\|46\|NZ_CP023546\|CRISPRCasFinder	2961-3006	46	NZ_CP017416	Campylobacter jejuni strain MTVDSCj07 plasmid pMTVDSCj07-1, complete sequence	13640-13685	0	1.0
NZ_CP023546_1	1.1\|2961\|46\|NZ_CP023546\|CRISPRCasFinder	2961-3006	46	NZ_CP017872	Campylobacter coli strain BP3183 plasmid pCCDM183, complete sequence	6319-6364	0	1.0
NZ_CP023546_1	1.1\|2961\|46\|NZ_CP023546\|CRISPRCasFinder	2961-3006	46	NC_022355	Campylobacter coli CVM N29710 plasmid pN29710-1, complete sequence	18180-18225	0	1.0
NZ_CP023546_1	1.1\|2961\|46\|NZ_CP023546\|CRISPRCasFinder	2961-3006	46	NZ_KJ646012	Campylobacter jejuni strain 11601MD plasmid p11601MD, complete sequence	39844-39889	1	0.978
NZ_CP023546_1	1.1\|2961\|46\|NZ_CP023546\|CRISPRCasFinder	2961-3006	46	NZ_CP013035	Campylobacter coli strain HC2-48 plasmid pccdm1, complete sequence	5370-5415	1	0.978
NZ_CP023546_1	1.1\|2961\|46\|NZ_CP023546\|CRISPRCasFinder	2961-3006	46	NZ_CP007752	Campylobacter jejuni subsp. jejuni D42a plasmid pTet-D42a, complete sequence	6501-6546	1	0.978
NZ_CP023546_1	1.1\|2961\|46\|NZ_CP023546\|CRISPRCasFinder	2961-3006	46	NZ_CP014745	Campylobacter jejuni strain OD267 plasmid pCJDM67 L, complete sequence	72098-72143	1	0.978
NZ_CP023546_1	1.1\|2961\|46\|NZ_CP023546\|CRISPRCasFinder	2961-3006	46	NZ_CP044168	Campylobacter jejuni strain AR-0415 plasmid pAR-0415, complete sequence	11611-11656	1	0.978
NZ_CP023546_1	1.1\|2961\|46\|NZ_CP023546\|CRISPRCasFinder	2961-3006	46	NZ_CP040609	Campylobacter sp. CFSAN093226 plasmid unnamed, complete sequence	3963-4008	1	0.978
NZ_CP023546_1	1.1\|2961\|46\|NZ_CP023546\|CRISPRCasFinder	2961-3006	46	NZ_CP007750	Campylobacter jejuni subsp. jejuni M129 plasmid pTet-M129, complete sequence	5064-5109	1	0.978
NZ_CP023546_1	1.1\|2961\|46\|NZ_CP023546\|CRISPRCasFinder	2961-3006	46	NZ_CP010073	Campylobacter jejuni subsp. jejuni strain 01-1512 plasmid pCj1, complete sequence	8610-8655	1	0.978
NZ_CP023546_1	1.1\|2961\|46\|NZ_CP023546\|CRISPRCasFinder	2961-3006	46	CP002030	Campylobacter jejuni subsp. jejuni ICDCCJ07001 plasmid pTet, complete sequence	19049-19094	1	0.978
NZ_CP023546_1	1.1\|2961\|46\|NZ_CP023546\|CRISPRCasFinder	2961-3006	46	NZ_CP020775	Campylobacter jejuni strain YH002 plasmid pCJP002, complete sequence	21135-21180	1	0.978
NZ_CP023546_1	1.2\|3036\|65\|NZ_CP023546\|CRISPRCasFinder	3036-3100	65	NZ_KX686749	Campylobacter coli strain Tx40 plasmid unnamed, complete sequence	16546-16610	5	0.923
NZ_CP023546_1	1.2\|3036\|65\|NZ_CP023546\|CRISPRCasFinder	3036-3100	65	NZ_CP007182	Campylobacter coli RM4661 plasmid pRM4661_48kbp, complete sequence	17086-17150	5	0.923
NZ_CP023546_1	1.2\|3036\|65\|NZ_CP023546\|CRISPRCasFinder	3036-3100	65	NZ_KJ646012	Campylobacter jejuni strain 11601MD plasmid p11601MD, complete sequence	39919-39983	5	0.923
NZ_CP023546_1	1.2\|3036\|65\|NZ_CP023546\|CRISPRCasFinder	3036-3100	65	NZ_CP045793	Campylobacter coli strain CFSAN032805 plasmid p1CFSAN032805, complete sequence	2464-2528	5	0.923
NZ_CP023546_1	1.2\|3036\|65\|NZ_CP023546\|CRISPRCasFinder	3036-3100	65	NC_017282	Campylobacter jejuni subsp. jejuni S3 plasmid pTet, complete sequence	33055-33119	5	0.923
NZ_CP023546_1	1.2\|3036\|65\|NZ_CP023546\|CRISPRCasFinder	3036-3100	65	NZ_CP013035	Campylobacter coli strain HC2-48 plasmid pccdm1, complete sequence	5445-5509	5	0.923
NZ_CP023546_1	1.2\|3036\|65\|NZ_CP023546\|CRISPRCasFinder	3036-3100	65	NZ_CP007752	Campylobacter jejuni subsp. jejuni D42a plasmid pTet-D42a, complete sequence	6576-6640	5	0.923
NZ_CP023546_1	1.2\|3036\|65\|NZ_CP023546\|CRISPRCasFinder	3036-3100	65	NC_006134	Campylobacter coli plasmid pCC31, complete sequence	20918-20982	5	0.923
NZ_CP023546_1	1.2\|3036\|65\|NZ_CP023546\|CRISPRCasFinder	3036-3100	65	NZ_CP014745	Campylobacter jejuni strain OD267 plasmid pCJDM67 L, complete sequence	72173-72237	5	0.923
NZ_CP023546_1	1.2\|3036\|65\|NZ_CP023546\|CRISPRCasFinder	3036-3100	65	NZ_CP023546	Campylobacter coli strain CFSAN032805 plasmid pCFSAN032805_1, complete sequence	3036-3100	5	0.923
NZ_CP023546_1	1.2\|3036\|65\|NZ_CP023546\|CRISPRCasFinder	3036-3100	65	NZ_CP007180	Campylobacter coli RM5611 plasmid pRM5611_48kb, complete sequence	20282-20346	5	0.923
NZ_CP023546_1	1.2\|3036\|65\|NZ_CP023546\|CRISPRCasFinder	3036-3100	65	NZ_CP017026	Campylobacter coli plasmid pCC14983A-1, complete sequence	77836-77900	5	0.923
NZ_CP023546_1	1.2\|3036\|65\|NZ_CP023546\|CRISPRCasFinder	3036-3100	65	NZ_CP011017	Campylobacter coli strain FB1 plasmid pFB1TET, complete sequence	25181-25245	5	0.923
NZ_CP023546_1	1.2\|3036\|65\|NZ_CP023546\|CRISPRCasFinder	3036-3100	65	NZ_CP044168	Campylobacter jejuni strain AR-0415 plasmid pAR-0415, complete sequence	11686-11750	5	0.923
NZ_CP023546_1	1.2\|3036\|65\|NZ_CP023546\|CRISPRCasFinder	3036-3100	65	NZ_CP023544	Campylobacter jejuni strain CFSAN032806 plasmid pCFSAN032806, complete sequence	18119-18183	5	0.923
NZ_CP023546_1	1.2\|3036\|65\|NZ_CP023546\|CRISPRCasFinder	3036-3100	65	NZ_CP017861	Campylobacter jejuni strain TS1218 plasmid pCJDM218, complete sequence	10972-11036	5	0.923
NZ_CP023546_1	1.2\|3036\|65\|NZ_CP023546\|CRISPRCasFinder	3036-3100	65	NZ_CP043764	Campylobacter jejuni strain BfR-CA-14430 plasmid pBfR-CA-14430, complete sequence	30396-30460	5	0.923
NZ_CP023546_1	1.2\|3036\|65\|NZ_CP023546\|CRISPRCasFinder	3036-3100	65	NZ_CP007750	Campylobacter jejuni subsp. jejuni M129 plasmid pTet-M129, complete sequence	5139-5203	5	0.923
NZ_CP023546_1	1.2\|3036\|65\|NZ_CP023546\|CRISPRCasFinder	3036-3100	65	NZ_CP048762	Campylobacter jejuni strain ZS004 plasmid pCJFEX, complete sequence	17584-17648	5	0.923
NZ_CP023546_1	1.2\|3036\|65\|NZ_CP023546\|CRISPRCasFinder	3036-3100	65	NZ_CP017418	Campylobacter jejuni strain MTVDSCj13 plasmid pMTVDSCj13-1, complete sequence	13107-13171	5	0.923
NZ_CP023546_1	1.2\|3036\|65\|NZ_CP023546\|CRISPRCasFinder	3036-3100	65	NZ_CP017419	Campylobacter jejuni strain MTVDSCj16 plasmid pMTVDSCj16-1, complete sequence	13133-13197	5	0.923
NZ_CP023546_1	1.2\|3036\|65\|NZ_CP023546\|CRISPRCasFinder	3036-3100	65	NZ_CP017866	Campylobacter coli strain YF2105 plasmid pCCDM105L, complete sequence	40980-41044	5	0.923
NZ_CP023546_1	1.2\|3036\|65\|NZ_CP023546\|CRISPRCasFinder	3036-3100	65	NZ_CP017879	Campylobacter coli strain BG2108 plasmid pCCDM108L, complete sequence	4244-4308	5	0.923
NZ_CP023546_1	1.2\|3036\|65\|NZ_CP023546\|CRISPRCasFinder	3036-3100	65	NZ_CP017416	Campylobacter jejuni strain MTVDSCj07 plasmid pMTVDSCj07-1, complete sequence	13546-13610	5	0.923
NZ_CP023546_1	1.2\|3036\|65\|NZ_CP023546\|CRISPRCasFinder	3036-3100	65	NZ_CP017872	Campylobacter coli strain BP3183 plasmid pCCDM183, complete sequence	6225-6289	5	0.923
NZ_CP023546_1	1.2\|3036\|65\|NZ_CP023546\|CRISPRCasFinder	3036-3100	65	NZ_CP020775	Campylobacter jejuni strain YH002 plasmid pCJP002, complete sequence	21041-21105	5	0.923
NZ_CP023546_1	1.2\|3036\|65\|NZ_CP023546\|CRISPRCasFinder	3036-3100	65	NZ_MK541988	Campylobacter coli strain CVM N61740F plasmid pN61740F, complete sequence	9333-9397	5	0.923
NZ_CP023546_1	1.2\|3036\|65\|NZ_CP023546\|CRISPRCasFinder	3036-3100	65	NZ_MK541989	Campylobacter coli strain CVM N61925F plasmid pN61925F, complete sequence	33118-33182	5	0.923
NZ_CP023546_1	1.2\|3036\|65\|NZ_CP023546\|CRISPRCasFinder	3036-3100	65	NC_022354	Campylobacter jejuni subsp. jejuni 00-2544 plasmid unnamed, complete sequence	34748-34812	5	0.923
NZ_CP023546_1	1.2\|3036\|65\|NZ_CP023546\|CRISPRCasFinder	3036-3100	65	NC_022355	Campylobacter coli CVM N29710 plasmid pN29710-1, complete sequence	18086-18150	5	0.923
NZ_CP023546_1	1.2\|3036\|65\|NZ_CP023546\|CRISPRCasFinder	3036-3100	65	NZ_CP017869	Campylobacter coli strain MG1116 plasmid pCCDM116L, complete sequence	18554-18618	6	0.908
NZ_CP023546_1	1.2\|3036\|65\|NZ_CP023546\|CRISPRCasFinder	3036-3100	65	NZ_CP010073	Campylobacter jejuni subsp. jejuni strain 01-1512 plasmid pCj1, complete sequence	8516-8580	7	0.892
NZ_CP023546_1	1.2\|3036\|65\|NZ_CP023546\|CRISPRCasFinder	3036-3100	65	NZ_CP040609	Campylobacter sp. CFSAN093226 plasmid unnamed, complete sequence	4038-4102	7	0.892
NZ_CP023546_1	1.2\|3036\|65\|NZ_CP023546\|CRISPRCasFinder	3036-3100	65	CP002030	Campylobacter jejuni subsp. jejuni ICDCCJ07001 plasmid pTet, complete sequence	18955-19019	7	0.892

1. spacer 1.1|2961|46|NZ_CP023546|CRISPRCasFinder matches to NZ_CP045793 (Campylobacter coli strain CFSAN032805 plasmid p1CFSAN032805, complete sequence) position: , mismatch: 0, identity: 1.0

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
**********************************************

2. spacer 1.1|2961|46|NZ_CP023546|CRISPRCasFinder matches to NC_017282 (Campylobacter jejuni subsp. jejuni S3 plasmid pTet, complete sequence) position: , mismatch: 0, identity: 1.0

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
**********************************************

3. spacer 1.1|2961|46|NZ_CP023546|CRISPRCasFinder matches to NZ_CP023546 (Campylobacter coli strain CFSAN032805 plasmid pCFSAN032805_1, complete sequence) position: , mismatch: 0, identity: 1.0

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
**********************************************

4. spacer 1.1|2961|46|NZ_CP023546|CRISPRCasFinder matches to NZ_CP017026 (Campylobacter coli plasmid pCC14983A-1, complete sequence) position: , mismatch: 0, identity: 1.0

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
**********************************************

5. spacer 1.1|2961|46|NZ_CP023546|CRISPRCasFinder matches to NZ_CP011017 (Campylobacter coli strain FB1 plasmid pFB1TET, complete sequence) position: , mismatch: 0, identity: 1.0

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
**********************************************

6. spacer 1.1|2961|46|NZ_CP023546|CRISPRCasFinder matches to NZ_CP017861 (Campylobacter jejuni strain TS1218 plasmid pCJDM218, complete sequence) position: , mismatch: 0, identity: 1.0

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
**********************************************

7. spacer 1.1|2961|46|NZ_CP023546|CRISPRCasFinder matches to NZ_CP043764 (Campylobacter jejuni strain BfR-CA-14430 plasmid pBfR-CA-14430, complete sequence) position: , mismatch: 0, identity: 1.0

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
**********************************************

8. spacer 1.1|2961|46|NZ_CP023546|CRISPRCasFinder matches to NZ_CP048762 (Campylobacter jejuni strain ZS004 plasmid pCJFEX, complete sequence) position: , mismatch: 0, identity: 1.0

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
**********************************************

9. spacer 1.1|2961|46|NZ_CP023546|CRISPRCasFinder matches to NZ_MK541988 (Campylobacter coli strain CVM N61740F plasmid pN61740F, complete sequence) position: , mismatch: 0, identity: 1.0

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
**********************************************

10. spacer 1.1|2961|46|NZ_CP023546|CRISPRCasFinder matches to NZ_MK541989 (Campylobacter coli strain CVM N61925F plasmid pN61925F, complete sequence) position: , mismatch: 0, identity: 1.0

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
**********************************************

11. spacer 1.1|2961|46|NZ_CP023546|CRISPRCasFinder matches to NC_022354 (Campylobacter jejuni subsp. jejuni 00-2544 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
**********************************************

12. spacer 1.1|2961|46|NZ_CP023546|CRISPRCasFinder matches to NZ_KX686749 (Campylobacter coli strain Tx40 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
**********************************************

13. spacer 1.1|2961|46|NZ_CP023546|CRISPRCasFinder matches to NZ_CP007182 (Campylobacter coli RM4661 plasmid pRM4661_48kbp, complete sequence) position: , mismatch: 0, identity: 1.0

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
**********************************************

14. spacer 1.1|2961|46|NZ_CP023546|CRISPRCasFinder matches to NC_006134 (Campylobacter coli plasmid pCC31, complete sequence) position: , mismatch: 0, identity: 1.0

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
**********************************************

15. spacer 1.1|2961|46|NZ_CP023546|CRISPRCasFinder matches to NZ_CP007180 (Campylobacter coli RM5611 plasmid pRM5611_48kb, complete sequence) position: , mismatch: 0, identity: 1.0

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
**********************************************

16. spacer 1.1|2961|46|NZ_CP023546|CRISPRCasFinder matches to NZ_CP023544 (Campylobacter jejuni strain CFSAN032806 plasmid pCFSAN032806, complete sequence) position: , mismatch: 0, identity: 1.0

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
**********************************************

17. spacer 1.1|2961|46|NZ_CP023546|CRISPRCasFinder matches to NZ_CP017418 (Campylobacter jejuni strain MTVDSCj13 plasmid pMTVDSCj13-1, complete sequence) position: , mismatch: 0, identity: 1.0

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
**********************************************

18. spacer 1.1|2961|46|NZ_CP023546|CRISPRCasFinder matches to NZ_CP017419 (Campylobacter jejuni strain MTVDSCj16 plasmid pMTVDSCj16-1, complete sequence) position: , mismatch: 0, identity: 1.0

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
**********************************************

19. spacer 1.1|2961|46|NZ_CP023546|CRISPRCasFinder matches to NZ_CP017866 (Campylobacter coli strain YF2105 plasmid pCCDM105L, complete sequence) position: , mismatch: 0, identity: 1.0

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
**********************************************

20. spacer 1.1|2961|46|NZ_CP023546|CRISPRCasFinder matches to NZ_CP017879 (Campylobacter coli strain BG2108 plasmid pCCDM108L, complete sequence) position: , mismatch: 0, identity: 1.0

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
**********************************************

21. spacer 1.1|2961|46|NZ_CP023546|CRISPRCasFinder matches to NZ_CP017416 (Campylobacter jejuni strain MTVDSCj07 plasmid pMTVDSCj07-1, complete sequence) position: , mismatch: 0, identity: 1.0

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
**********************************************

22. spacer 1.1|2961|46|NZ_CP023546|CRISPRCasFinder matches to NZ_CP017872 (Campylobacter coli strain BP3183 plasmid pCCDM183, complete sequence) position: , mismatch: 0, identity: 1.0

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
**********************************************

23. spacer 1.1|2961|46|NZ_CP023546|CRISPRCasFinder matches to NC_022355 (Campylobacter coli CVM N29710 plasmid pN29710-1, complete sequence) position: , mismatch: 0, identity: 1.0

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
**********************************************

24. spacer 1.1|2961|46|NZ_CP023546|CRISPRCasFinder matches to NZ_KJ646012 (Campylobacter jejuni strain 11601MD plasmid p11601MD, complete sequence) position: , mismatch: 1, identity: 0.978

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgtacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
***.******************************************

25. spacer 1.1|2961|46|NZ_CP023546|CRISPRCasFinder matches to NZ_CP013035 (Campylobacter coli strain HC2-48 plasmid pccdm1, complete sequence) position: , mismatch: 1, identity: 0.978

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgtacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
***.******************************************

26. spacer 1.1|2961|46|NZ_CP023546|CRISPRCasFinder matches to NZ_CP007752 (Campylobacter jejuni subsp. jejuni D42a plasmid pTet-D42a, complete sequence) position: , mismatch: 1, identity: 0.978

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgtacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
***.******************************************

27. spacer 1.1|2961|46|NZ_CP023546|CRISPRCasFinder matches to NZ_CP014745 (Campylobacter jejuni strain OD267 plasmid pCJDM67 L, complete sequence) position: , mismatch: 1, identity: 0.978

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgtacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
***.******************************************

28. spacer 1.1|2961|46|NZ_CP023546|CRISPRCasFinder matches to NZ_CP044168 (Campylobacter jejuni strain AR-0415 plasmid pAR-0415, complete sequence) position: , mismatch: 1, identity: 0.978

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgtacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
***.******************************************

29. spacer 1.1|2961|46|NZ_CP023546|CRISPRCasFinder matches to NZ_CP040609 (Campylobacter sp. CFSAN093226 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.978

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atacacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
**.*******************************************

30. spacer 1.1|2961|46|NZ_CP023546|CRISPRCasFinder matches to NZ_CP007750 (Campylobacter jejuni subsp. jejuni M129 plasmid pTet-M129, complete sequence) position: , mismatch: 1, identity: 0.978

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgtacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
***.******************************************

31. spacer 1.1|2961|46|NZ_CP023546|CRISPRCasFinder matches to NZ_CP010073 (Campylobacter jejuni subsp. jejuni strain 01-1512 plasmid pCj1, complete sequence) position: , mismatch: 1, identity: 0.978

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atacacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
**.*******************************************

32. spacer 1.1|2961|46|NZ_CP023546|CRISPRCasFinder matches to CP002030 (Campylobacter jejuni subsp. jejuni ICDCCJ07001 plasmid pTet, complete sequence) position: , mismatch: 1, identity: 0.978

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atacacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
**.*******************************************

33. spacer 1.1|2961|46|NZ_CP023546|CRISPRCasFinder matches to NZ_CP020775 (Campylobacter jejuni strain YH002 plasmid pCJP002, complete sequence) position: , mismatch: 1, identity: 0.978

atgcacttacattaaagtcaacaaaaattgctaaatgctcctctta	CRISPR spacer
atgtacttacattaaagtcaacaaaaattgctaaatgctcctctta	Protospacer
***.******************************************

34. spacer 1.2|3036|65|NZ_CP023546|CRISPRCasFinder matches to NZ_KX686749 (Campylobacter coli strain Tx40 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

35. spacer 1.2|3036|65|NZ_CP023546|CRISPRCasFinder matches to NZ_CP007182 (Campylobacter coli RM4661 plasmid pRM4661_48kbp, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

36. spacer 1.2|3036|65|NZ_CP023546|CRISPRCasFinder matches to NZ_KJ646012 (Campylobacter jejuni strain 11601MD plasmid p11601MD, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

37. spacer 1.2|3036|65|NZ_CP023546|CRISPRCasFinder matches to NZ_CP045793 (Campylobacter coli strain CFSAN032805 plasmid p1CFSAN032805, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

38. spacer 1.2|3036|65|NZ_CP023546|CRISPRCasFinder matches to NC_017282 (Campylobacter jejuni subsp. jejuni S3 plasmid pTet, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

39. spacer 1.2|3036|65|NZ_CP023546|CRISPRCasFinder matches to NZ_CP013035 (Campylobacter coli strain HC2-48 plasmid pccdm1, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

40. spacer 1.2|3036|65|NZ_CP023546|CRISPRCasFinder matches to NZ_CP007752 (Campylobacter jejuni subsp. jejuni D42a plasmid pTet-D42a, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

41. spacer 1.2|3036|65|NZ_CP023546|CRISPRCasFinder matches to NC_006134 (Campylobacter coli plasmid pCC31, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

42. spacer 1.2|3036|65|NZ_CP023546|CRISPRCasFinder matches to NZ_CP014745 (Campylobacter jejuni strain OD267 plasmid pCJDM67 L, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

43. spacer 1.2|3036|65|NZ_CP023546|CRISPRCasFinder matches to NZ_CP023546 (Campylobacter coli strain CFSAN032805 plasmid pCFSAN032805_1, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

44. spacer 1.2|3036|65|NZ_CP023546|CRISPRCasFinder matches to NZ_CP007180 (Campylobacter coli RM5611 plasmid pRM5611_48kb, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

45. spacer 1.2|3036|65|NZ_CP023546|CRISPRCasFinder matches to NZ_CP017026 (Campylobacter coli plasmid pCC14983A-1, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

46. spacer 1.2|3036|65|NZ_CP023546|CRISPRCasFinder matches to NZ_CP011017 (Campylobacter coli strain FB1 plasmid pFB1TET, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

47. spacer 1.2|3036|65|NZ_CP023546|CRISPRCasFinder matches to NZ_CP044168 (Campylobacter jejuni strain AR-0415 plasmid pAR-0415, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

48. spacer 1.2|3036|65|NZ_CP023546|CRISPRCasFinder matches to NZ_CP023544 (Campylobacter jejuni strain CFSAN032806 plasmid pCFSAN032806, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

49. spacer 1.2|3036|65|NZ_CP023546|CRISPRCasFinder matches to NZ_CP017861 (Campylobacter jejuni strain TS1218 plasmid pCJDM218, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

50. spacer 1.2|3036|65|NZ_CP023546|CRISPRCasFinder matches to NZ_CP043764 (Campylobacter jejuni strain BfR-CA-14430 plasmid pBfR-CA-14430, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

51. spacer 1.2|3036|65|NZ_CP023546|CRISPRCasFinder matches to NZ_CP007750 (Campylobacter jejuni subsp. jejuni M129 plasmid pTet-M129, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

52. spacer 1.2|3036|65|NZ_CP023546|CRISPRCasFinder matches to NZ_CP048762 (Campylobacter jejuni strain ZS004 plasmid pCJFEX, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

53. spacer 1.2|3036|65|NZ_CP023546|CRISPRCasFinder matches to NZ_CP017418 (Campylobacter jejuni strain MTVDSCj13 plasmid pMTVDSCj13-1, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

54. spacer 1.2|3036|65|NZ_CP023546|CRISPRCasFinder matches to NZ_CP017419 (Campylobacter jejuni strain MTVDSCj16 plasmid pMTVDSCj16-1, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

55. spacer 1.2|3036|65|NZ_CP023546|CRISPRCasFinder matches to NZ_CP017866 (Campylobacter coli strain YF2105 plasmid pCCDM105L, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

56. spacer 1.2|3036|65|NZ_CP023546|CRISPRCasFinder matches to NZ_CP017879 (Campylobacter coli strain BG2108 plasmid pCCDM108L, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

57. spacer 1.2|3036|65|NZ_CP023546|CRISPRCasFinder matches to NZ_CP017416 (Campylobacter jejuni strain MTVDSCj07 plasmid pMTVDSCj07-1, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

58. spacer 1.2|3036|65|NZ_CP023546|CRISPRCasFinder matches to NZ_CP017872 (Campylobacter coli strain BP3183 plasmid pCCDM183, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

59. spacer 1.2|3036|65|NZ_CP023546|CRISPRCasFinder matches to NZ_CP020775 (Campylobacter jejuni strain YH002 plasmid pCJP002, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

60. spacer 1.2|3036|65|NZ_CP023546|CRISPRCasFinder matches to NZ_MK541988 (Campylobacter coli strain CVM N61740F plasmid pN61740F, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

61. spacer 1.2|3036|65|NZ_CP023546|CRISPRCasFinder matches to NZ_MK541989 (Campylobacter coli strain CVM N61925F plasmid pN61925F, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

62. spacer 1.2|3036|65|NZ_CP023546|CRISPRCasFinder matches to NC_022354 (Campylobacter jejuni subsp. jejuni 00-2544 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

63. spacer 1.2|3036|65|NZ_CP023546|CRISPRCasFinder matches to NC_022355 (Campylobacter coli CVM N29710 plasmid pN29710-1, complete sequence) position: , mismatch: 5, identity: 0.923

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	Protospacer
************************************************************

64. spacer 1.2|3036|65|NZ_CP023546|CRISPRCasFinder matches to NZ_CP017869 (Campylobacter coli strain MG1116 plasmid pCCDM116L, complete sequence) position: , mismatch: 6, identity: 0.908

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
gatttttgacttaaatgtaatgatttttgacatttttacgaaaagaacatatggaaaata	Protospacer
******************************************** ***************

65. spacer 1.2|3036|65|NZ_CP023546|CRISPRCasFinder matches to NZ_CP010073 (Campylobacter jejuni subsp. jejuni strain 01-1512 plasmid pCj1, complete sequence) position: , mismatch: 7, identity: 0.892

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
aatttttgacttaaatgtaataatttttgacatttttacgaaaataacatatggaaaata	Protospacer
.********************.**************************************

66. spacer 1.2|3036|65|NZ_CP023546|CRISPRCasFinder matches to NZ_CP040609 (Campylobacter sp. CFSAN093226 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.892

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
aatttttgacttaaatgtaataatttttgacatttttacgaaaataacatatggaaaata	Protospacer
.********************.**************************************

67. spacer 1.2|3036|65|NZ_CP023546|CRISPRCasFinder matches to CP002030 (Campylobacter jejuni subsp. jejuni ICDCCJ07001 plasmid pTet, complete sequence) position: , mismatch: 7, identity: 0.892

gatttttgacttaaatgtaatgatttttgacatttttacgaaaataacatatggaaaata	CRISPR spacer
aatttttgacttaaatgtaataatttttgacatttttacgaaaataacatatggaaaata	Protospacer
.********************.**************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 5296

Escherichia_phage(100.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002790342.1\|601_2395_-	AAA family ATPase	NA	NA	NA	NA
WP_002790340.1\|2398_2602_-	addiction module toxin, HicA family	NA	NA	NA	NA
WP_002801148.1\|2594_2813_-	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_002823273.1\|3304_3580_+	hypothetical protein	NA	NA	NA	NA
WP_021034322.1\|3658_3952_-	EexN family lipoprotein	NA	NA	NA	NA
WP_002823310.1\|4069_5296_-	hypothetical protein	A0A1W6JT61	Escherichia_phage	2.3e-20	31.1

DBSCAN-SWA_2

9829 : 17691

Burkholderia_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_031263757.1\|9829_10441_-	NYN domain-containing protein	A4JWQ6	Burkholderia_virus	6.2e-27	43.3
WP_079275893.1\|10694_16490_-	DEAD/DEAH box helicase family protein	I3PUW5	Vibrio_phage	1.2e-284	39.8
WP_002823208.1\|16536_16803_-	hypothetical protein	NA	NA	NA	NA
WP_002790730.1\|16805_17366_-	hypothetical protein	NA	NA	NA	NA
WP_002779704.1\|17424_17691_-	hypothetical protein	A0A2R3ZY63	Campylobacter_phage	6.8e-39	90.4

DBSCAN-SWA_3

22597 : 24644

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001096887.1\|22597_23392_-	aminoglycoside O-phosphotransferase APH(3')-IIIa	E4ZFP6	Streptococcus_phage	2.3e-154	100.0
WP_000627290.1\|23484_24027_-	streptothricin N-acetyltransferase Sat4	A0A1B0RXL7	Streptococcus_phage	8.9e-94	100.0
WP_009145956.1\|24023_24644_-	AAA family ATPase	E4ZFP8	Streptococcus_phage	2.7e-94	100.0

DBSCAN-SWA_4

27749 : 37302

Streptococcus_phage(60.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002578723.1\|27749_28520_-	nucleoside phosphorylase	F5CA76	Streptococcus_phi-m46.1-like_phage	1.8e-44	57.7
WP_002779755.1\|29535_29709_-	conjugal transfer protein	D0R0F6	Streptococcus_phage	4.6e-28	100.0
WP_021034343.1\|29760_31680_-	tetracycline resistance ribosomal protection protein Tet(O)	A0A1B0RXH7	Streptococcus_phage	0.0e+00	98.4
WP_021034342.1\|32378_33299_+	aminoglycoside O-phosphotransferase APH(2'')-Ig	A0A0N9SKF6	Staphylococcus_phage	1.1e-22	28.7
WP_002834241.1\|33582_35004_-	hypothetical protein	NA	NA	NA	NA
WP_021034341.1\|35109_37302_-	DNA topoisomerase III	A0A1X9I6W8	Streptococcus_phage	1.7e-18	23.9

DBSCAN-SWA_5

49475 : 51037

Yersinia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002779629.1\|49475_49898_-	single-stranded DNA-binding protein	A9DEQ4	Yersinia_phage	1.7e-12	37.3
WP_002779628.1\|49931_50483_-	hypothetical protein	NA	NA	NA	NA
WP_002779627.1\|50479_51037_-	Rha family transcriptional regulator	X2KM03	Campylobacter_phage	7.4e-19	50.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP023547

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP023547_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023547_1

6952-7075

Orphan

Consensus_repeat	Method
TCTATTTTTGTCTCAAGAAAATGAAAAAAATA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP023547_1

>merge|NZ_CP023547|1|6952-7075|CRISPRCasFinder
TCTATTTTTGTCTCAAGAAAATGAAAAAAATAGAAAATTTTTTATAAAAAATGTATATTTTTTTACCAAAAAATGAGACAAAAGCAAAAAATCTATATTTTGTCTCAAGAAAATGAAAAAAATA

>NZ_CP023547|1|1|6952-7075|CRISPRCasFinder
TCTATTTTTGTCTCAAGAAAATGAAAAAAATA	GAAAATTTTTTATAAAAAATGTATATTTTTTTACCAAAAAATGAGACAAAAGCAAAAAAT
CTATATTTTGTCTCAAGAAAATGAAAAAAATA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023547.1\|WP_079744492.1\|13063_14299_+\|P-type-conjugative-transfer-protein-TrbL	unknown	unknown	gnl\|CDD\|131830
NZ_CP023547.1\|WP_002791558.1\|513_1200_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|222854
NZ_CP023547.1\|WP_002797386.1\|3786_4170_-\|DNA-transfer-protein	unknown	unknown	gnl\|CDD\|184361
NZ_CP023547.1\|WP_023890689.1\|15026_15950_+\|P-type-conjugative-transfer-protein-TrbG	unknown	unknown	gnl\|CDD\|237543
NZ_CP023547.1\|WP_002779817.1\|8591_8879_+\|conjugal-transfer-protein-TrbD	unknown	unknown	gnl\|CDD\|184348
NZ_CP023547.1\|WP_002779815.1\|11344_12016_+\|TrbM-protein	unknown	unknown	gnl\|CDD\|369359
NZ_CP023547.1\|WP_057031754.1\|12000_12810_+\|P-type-conjugative-transfer-protein-TrbJ	unknown	unknown	gnl\|CDD\|131827
NZ_CP023547.1\|WP_002784998.1\|8295_8592_+\|conjugal-transfer-protein-TrbC	unknown	unknown	gnl\|CDD\|184376
NZ_CP023547.1\|WP_002791546.1\|6534_6948_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|350205
NZ_CP023547.1\|WP_002790618.1\|4369_4693_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023547.1\|WP_002792775.1\|7347_8286_+\|P-type-conjugative-transfer-ATPase-TrbB	unknown	unknown	gnl\|CDD\|274297
NZ_CP023547.1\|WP_004294083.1\|26_422_+\|conjugal-transfer-protein-TraM	unknown	unknown	gnl\|CDD\|184378
NZ_CP023547.1\|WP_002790621.1\|1202_1427_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023547.1\|WP_005023564.1\|12858_13128_+\|EexN-family-lipoprotein	unknown	unknown	unknown
NZ_CP023547.1\|WP_002791548.1\|5623_6538_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023547.1\|WP_002838514.1\|1667_3824_-\|relaxase/mobilization-nuclease-domain-containing-protein	unknown	unknown	gnl\|CDD\|237539
NZ_CP023547.1\|WP_002797615.1\|8882_11348_+\|conjugal-transfer-protein-TrbE	unknown	unknown	gnl\|CDD\|184375
NZ_CP023547.1\|WP_057031752.1\|14318_15014_+\|conjugal-transfer-protein-TrbF	unknown	unknown	gnl\|CDD\|237544

Protein	Function_ID	Function_description	E-value
NZ_CP023547.1\|WP_079744492.1\|13063_14299_+\|P-type-conjugative-transfer-protein-TrbL	gnl\|CDD\|131830	TIGR02783, probable_conjugal_transfer_protein_TrbL, P-type conjugative transfer protein TrbL. The TrbL protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbL is a homolog of the F-type TraG protein (which is believed to be a mating pair stabilization pore-forming protein, pfam07916) as well as the vir system VirB6 protein. [Cellular processes, Conjugation].	1.44264e-36
NZ_CP023547.1\|WP_002791558.1\|513_1200_+\|AAA-family-ATPase	gnl\|CDD\|222854	PHA02518, PHA02518, ParA-like protein; Provisional.	6.30987e-37
NZ_CP023547.1\|WP_002797386.1\|3786_4170_-\|DNA-transfer-protein	gnl\|CDD\|184361	PRK13877, PRK13877, conjugal transfer transcriptional regulator TraJ.	6.03137e-14
NZ_CP023547.1\|WP_023890689.1\|15026_15950_+\|P-type-conjugative-transfer-protein-TrbG	gnl\|CDD\|237543	PRK13885, PRK13885, conjugal transfer protein TrbG; Provisional.	1.95794e-85
NZ_CP023547.1\|WP_002779817.1\|8591_8879_+\|conjugal-transfer-protein-TrbD	gnl\|CDD\|184348	PRK13823, PRK13823, conjugal transfer protein TrbD; Provisional.	1.35781e-34
NZ_CP023547.1\|WP_002797615.1\|8882_11348_+\|conjugal-transfer-protein-TrbE	gnl\|CDD\|184375	PRK13891, PRK13891, conjugal transfer protein TrbE; Provisional.	0
NZ_CP023547.1\|WP_057031754.1\|12000_12810_+\|P-type-conjugative-transfer-protein-TrbJ	gnl\|CDD\|131827	TIGR02780, TrbJ_protein, P-type conjugative transfer protein TrbJ. The TrbJ protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbJ is a homolog of the F-type TraE protein (which is believed to be an inner membrane pore-forming protein, TIGR02761) as well as the vir system VirB5 protein.	3.42373e-25
NZ_CP023547.1\|WP_002784998.1\|8295_8592_+\|conjugal-transfer-protein-TrbC	gnl\|CDD\|184376	PRK13892, PRK13892, conjugal transfer protein TrbC; Provisional.	1.64851e-18
NZ_CP023547.1\|WP_002791546.1\|6534_6948_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|350205	cd09854, PIN_VapC-like, VapC-like PIN domains of VapC and Smg6 ribonucleases, ribosome assembly factor NOB1, rRNA-processing protein Fcf1, Archaeoglobus fulgidus AF0591 protein, and homologs. PIN (PilT N terminus) domains of such ribonucleases as the toxins of prokaryotic toxin/antitoxin operons FitAB and VapBC, as well as, eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1, are included in VapC-like this family. Also included are the PIN domains of the Pyrobaculum aerophilum Pea0151 and Archaeoglobus fulgidus AF0591 proteins and other similar archaeal homologs. The PIN domain belongs to a large nuclease superfamily. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	4.41013e-11
NZ_CP023547.1\|WP_002792775.1\|7347_8286_+\|P-type-conjugative-transfer-ATPase-TrbB	gnl\|CDD\|274297	TIGR02782, conjugal_transfer_protein, P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA. [Cellular processes, Conjugation].	4.21013e-146
NZ_CP023547.1\|WP_004294083.1\|26_422_+\|conjugal-transfer-protein-TraM	gnl\|CDD\|184378	PRK13895, PRK13895, conjugal transfer protein TraM; Provisional.	0.00167213
NZ_CP023547.1\|WP_002838514.1\|1667_3824_-\|relaxase/mobilization-nuclease-domain-containing-protein	gnl\|CDD\|237539	PRK13878, PRK13878, conjugal transfer relaxase TraI; Provisional.	2.89901e-83
NZ_CP023547.1\|WP_002779815.1\|11344_12016_+\|TrbM-protein	gnl\|CDD\|369359	pfam07424, TrbM, TrbM. This family contains the bacterial protein TrbM (approximately 180 residues long). In Comamonas testosteroni T-2, TrbM is derived from the IncP1beta plasmid pTSA, which encodes the widespread genes for p-toluenesulfonate (TSA) degradation.	1.74964e-46
NZ_CP023547.1\|WP_057031752.1\|14318_15014_+\|conjugal-transfer-protein-TrbF	gnl\|CDD\|237544	PRK13887, PRK13887, conjugal transfer protein TrbF; Provisional.	8.46632e-55

>NZ_CP023547.1|WP_002791546.1|6534_6948_+|type-II-toxin-antitoxin-system-VapC-family-toxin
MKKVFLDTNIFIDFFEETRENNQQAKQLIYFLISNDIKIIFSEDMISTVAYILKKENLGKFTHFIKTISLEKEFEIVSFGVSVINMACDYYDKYQGDFEDYLQYFCAEKEGCCAIYTMDKNFPNLKIPVKRYGEIDI
>NZ_CP023547.1|WP_002791548.1|5623_6538_+|hypothetical-protein
MNNEIEIKDLNEINKNNKQQVVYRKDNLSTDCITGEVIERNQIIVRKVQTRESFIKLFTENIHYIINLEPQEKTLFFTLLSSVDYKNVVRFDKSMKQNIILDKVLSRAGMYRALNGLIEKKVIFKIDRDFVKSYAGVGSDDCYLFNPNLVGRGSWNDLKNLRHTITREWDFENLEVRENLEIEEEYLGLDEIKNNQKQYQVKEINQEHDETTKVKNTEIVIEEKNNSANNQYSFDKKEEPSINKKVLISNDTQPSLFDENQKEQEARLFIEKFGGMFSGAYHPTKSAKELKREKLDQDLKEGKI
>NZ_CP023547.1|WP_002790618.1|4369_4693_+|hypothetical-protein
MKRGFAKIEFFANLEYLKQEYNKGYVVSKILYEKAKQDKNISMVYSQFNKYFNEVFKNKIEKKEITQENNQSLALENKEPIKLKINTKSKKVFDAKFGKDIKEDDLL
>NZ_CP023547.1|WP_002797386.1|3786_4170_-|DNA-transfer-protein
MKKTKQVNIRLTLEEYNLLTEKAQSHGLTLSRYLRDLSMNYPITCIVDQKVAHDVLNIAGDIGRLGGLFKHWLVRNEDNKVNFSNKRTYNDIDEIVDQILDLQILLKEQAKRIIQNDNQKDSKQKAE
>NZ_CP023547.1|WP_002838514.1|1667_3824_-|relaxase/mobilization-nuclease-domain-containing-protein
MIIKKIPSKKQNKSSFKNLSNYILDKDNNNAKVLVDYMLDKNNEMDKVEGYHFTNCSFDNDEDNINEIINTQKLNTTTKQDKTLHLVVSFQEDENPTLEILQAIEEEIAKSLGMEDHQRLSVVHSNTNNLHIHIAINKVNPHTLKVINPYNDVRILQETAMKLEKKYNLKLDNHISQKDKQSNKYNIHTMNCNFETWVKEKLSKQVDLMLKDEKTTFKDIKQFLAEYDLEFRERRKGFVIASKSEKLFCKASSIHRGLSKQALEKRFKELDLKQEKENTQNIKEEKHEIKEQYQRPNKETSKTLWEKYLRIENEKKAELDKELRMLKLRRNEFKTSIPSMKFNKNTFAHVKNQRMIFKNKQKELYQKYKRVSYRDFLISESLSGNEEATRALRRTKTKINENENTLSSTQEKPKIFENVDYITKEGYAVYKSGFNKAIDKGEMLKVSLINDKDDKEFLLNSLLMAIDRFGNHLNITGDDKFKRNILEVANDYNLNVSFSDQRMQKIQEENNNKRQEMKTRKVLKNIIELKIKLTEQDKDIDENIKEKELKALKFSLKKISNSTPSIFKGELKKLGFSYKEIDSMDTESVCIEIDGFIVNSANKEGLIAMNEEIKQTLIDDEEIKRFEKFEHLFLNTNKITDIAKGFYTNRKIDADEYIKRFSMQESKINKVANAISMLSDKNIDIMEKYAKKLEKDLKYQYLKKVEVIENNDINLNNF
>NZ_CP023547.1|WP_002790621.1|1202_1427_+|hypothetical-protein
MGFKKLSSEAPKNENDFVNSARGETGNAKTGNAKRNKKLMINFTEEEYQILNQEAHSMGLSLNSYVRFKIFRKE
>NZ_CP023547.1|WP_002791558.1|513_1200_+|AAA-family-ATPase
MIISIVNEKGGSGKTTLAVNLSARLAEDGDNVLLIDADPQKSTEVFSDMRSQSNLEPLFSNVSKTGISLGDEIKRMKNAFDSIIVDTGGRDSKEMRKAILSSNIIIIPTIPSQYDVNVLDHMLEIYNEVIEINPNLLALVLVNRVSPNPFLAKELENLKEYINEAKKEKGLDRVIMLESVIYERQAYRKAVIEGKSMKEFCDKNDKALNDFENFYQELLKIANEKLGV
>NZ_CP023547.1|WP_004294083.1|26_422_+|conjugal-transfer-protein-TraM
MNKKELIEEIAKKHHIILDENDPILAVVSANEIIFDDFLKKIDLLFIKHKTDLESYKFNILNEIREYSKNNQETLKDILIQAQTNQNTIKASQEKTEDTKEKKNTNINFWIIAIASQIIFLLVGLIIGIII
>NZ_CP023547.1|WP_002792775.1|7347_8286_+|P-type-conjugative-transfer-ATPase-TrbB
MSNIEFQARINEKIKREFGDIFFYLEDKETIELMLNSDGKLWLEKLGQDMICLGDFSEAKAKSIITAVSTLLDTTTNADNPILECELPLDGSRFEALLPPIVAKPTFTIRKKAVKIFTLDDYVESKILTPKQKEVLINAITERQNILVVGGTGSGKTTFSNAIIDGISKITPEHRIVIIEDTAELQCASENKVILRATDKVDMLRLLKATMRLRPDRIIVGETRGKEALDLLKAWNTGHPGGIATIHANSANGGLTRMEQLISEATSAKMSKLIAEAVNLIVFISKTKEGRKIKEIIKVIDYENDKYITQAI
>NZ_CP023547.1|WP_002784998.1|8295_8592_+|conjugal-transfer-protein-TrbC
MKKFLILFLALGLGYALASTTGAGLPWEGPLEQIKASLSGPVAFIMSILAIIGAGAGLIWGNEFSGFIKTLFYIVIVIALIVGANSFMSLFSTSGALI
>NZ_CP023547.1|WP_002779817.1|8591_8879_+|conjugal-transfer-protein-TrbD
MEELQRIDIYSALNKPNLIFGADRELILMVGVISFALIFTGATLLTSIIGIFLFFFCNMLLRLMAKSDPLMRQIFLRQIKYKKFYYAQSTPFSKD
>NZ_CP023547.1|WP_002797615.1|8882_11348_+|conjugal-transfer-protein-TrbE
MLALKEFRSKAKAFPDILNYASFIDEGILLNKDGSLTAGFYYRAGDISSMTINERNTLSARINSVLKTLGNGWAVHIDCSRIKTENYIDGDTFYKSNIAQILENERKHYFDNVEHFENLFTMIFTYLPPHKSINKITDLMIIDETKNKNQGDKILEYFKNTLQKLEDSLSNYIKIERMLPRIAIDEYNNEYILDDMLEYINFCICGERQKIILPNAPMFLDCLLGGRHFETGMHPRIDSQYIGIIAIEGFPSESYPNILNALTELNFDYRFNTRFIFLDDFEAQNSLNKYRKKWQQKTKGWLDQLLDRPARKQDDHAVLMVQELDSALSESKSGMIGYGYYTANIVVFDRDYESLEYKLKDIRKVLENLGFLSRTETINSVEAYLGTLPGFVYPNLRRPILNTLNLTHLIPLASIWAGDKYNSSERFPPNSPPLMQVVTSGNTPFRLNLHVSDLGHTLIFGPPGSGKSTLLANIFLAWQKYPNAKIYAFDKGQSLLAPTLATGGIHYDVAGDHSSLAFAPLANIKTDAEIAWAEFWIETCLKLQNVNITPKQKKLIHEALISHINTNSTSLTEFVSALQDSDLRDALNYYTISGTGGFLFDSEEDKLSLSSITTFEIEELMNLGDQYIIPALLYIFNRIEKGLDGSPTLLIIDEAWIALKHPAFKDKIVNWLKVLRKANVAVIMATQSLSDSAKSGILDILQEYCPTKIFLPNPEAYKKGSENVLAPYDFYKIFGLNDVQISIINNAIQKREYYYTSPLGTRLFNLALGKTNLAFTTISDKVSVKRVRQLYEKHKENWAYKWLEEKEINYKRFDNSQKEQI
>NZ_CP023547.1|WP_002779815.1|11344_12016_+|TrbM-protein
MKNFIFGVKKITLALSATLLISSNAFADDILTGDTKLACEAILCLSSGTRPSECSSSLARYFSIKFKKPWKTINARRAFLNLCPIQNDANIEDLVLNNLVDDVLPVSDPRQCTPNYLNTQVETKRSYSTFGIMSYRINPNMPNFCHALINHAYTDYKTPKYKCTGEFYNSLEWKLSAKLQLITQQAYESLSDDQRYMISRTCGDRNCYDYYQKIPFTKECWTY
>NZ_CP023547.1|WP_057031754.1|12000_12810_+|P-type-conjugative-transfer-protein-TrbJ
MLDLLKGVNMRNLKKATLAIATTLLIGTNNAFAGGIPVIDVSAIANQVKDYAMQLQQYEQMYSQLQQQIQMVQMQKQNLERLTKEDWDNLGTVLYQTRNVMNKVNGISYDIGNVSRKFEDTYKDFEGYSNDLENATNESERNKIYSDRYKQIAETNQNTFNGTLQQLELQYQDLESEDTLIAKLKQNSQNSNGNLQAIQATNDLITYQIDEIRKLRSVIMDQSNMLTNYLASQNNQRIMQQAKIDKFLENAEKSGSSWGKSNPDALKWK
>NZ_CP023547.1|WP_005023564.1|12858_13128_+|EexN-family-lipoprotein
MKHFIFGGLLSLGALAFLAGCGDEAKTSDYYKTHIDEAKARVAECKKMEKMNETQQRDCSNAKWAIETNGLENAGSSWGKSNPDALKWK
>NZ_CP023547.1|WP_079744492.1|13063_14299_+|P-type-conjugative-transfer-protein-TrbL
MGLRMRVVLGVNQTQTLLSGNKLAIIFLIFLVPNLAFGAENADGILSLIRNGILSWTPLIKTACLWVFWTLVVIDLVWTFGLKALSGFEFGDFIATLIKKIMYIGIFLFLFNIDQWLQIIFNSFSQLATSVNNGISITPQNIIEQALNLVGKIIQSMDFWSPGDSILKVVAGVIILIAFVLMAIDLLIVYLKFFLMNVIVFFALALGGLSHFKQIGLNPIMTAIKVGVELFMIQGLMALSITMIDVINNEITQKSTADVILQILVVALIFCMITKMVPGIIEAVFNGSIGESAGASAGFRAVATMAAGAAAGAAAGAVGITRAMNAAKALHLAEGGKGGMDLVKGVAKNLAIAGGEHLRDNLTKGRMPNQMANRLQEKLKDIQGKTSEGGISSGSPKEESYQSGINPNITK
>NZ_CP023547.1|WP_057031752.1|14318_15014_+|conjugal-transfer-protein-TrbF
MNIFRQKQKIEKNEFDTSSNPYLNAKTEWLERYGDYITRAKNWQMVAIISLAMCFVCVLFIGYIGSQSKLIPYVIEVDKLGNTAKVGMVQNIDLKNPNVIKYSLNTFIYSWRSVWGNAETQRKFIFDAYAYVEPRSKAFNYLNSEFQKNNPFTRSTKENVRVKIKNIVPQNIDTWQVEWEETTTNLNEDILSKETYRGLIRIKQIIPNTEEQILKNPLGIFITDINFAKIL
>NZ_CP023547.1|WP_023890689.1|15026_15950_+|P-type-conjugative-transfer-protein-TrbG
MKKIILLSSLIASSLIANNLNERDFSNLTPKEKKDLAIAQKWINSKTTTIQGNNGEVIFLFGESMPSIVTAPLRLTDIALEPGEVIKDVQIGDSIRWAVSLSVSGEEPYLISHIIIKPTDKNLQTTMNIMTNKRVYRLNLISEAKKFMPAVSFNYPNSIIKTLEDYKNQMKAKSESKNFYKTKDDEIPSNIENLDFGYSVEGNAPFKPLRIYNDGIKTYIQMPKNLKFYEAPALMILDSSNEKQIVNYRLKYDTFIVDRLFNKAILLSNVGSKQEKIKITKHSNKANQDIVNNVLYDLSLQNKKENK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Identity
NZ_CP023547_1	1.1\|6984\|60\|NZ_CP023547\|CRISPRCasFinder	6984-7043	60	NZ_CP045792	Campylobacter coli strain CFSAN032805 plasmid p2CFSAN032805, complete sequence	24800-24859	1.0
NZ_CP023547_1	1.1\|6984\|60\|NZ_CP023547\|CRISPRCasFinder	6984-7043	60	NZ_CP017231	Campylobacter jejuni strain FORC_046 isolate Not reported plasmid pFORC46.2, complete sequence	18334-18393	1.0
NZ_CP023547_1	1.1\|6984\|60\|NZ_CP023547\|CRISPRCasFinder	6984-7043	60	NZ_CP046318	Campylobacter coli strain FDAARGOS_735 plasmid unnamed1, complete sequence	2746-2805	1.0
NZ_CP023547_1	1.1\|6984\|60\|NZ_CP023547\|CRISPRCasFinder	6984-7043	60	NZ_CP023547	Campylobacter coli strain CFSAN032805 plasmid pCFSAN032805_2, complete sequence	6984-7043	1.0
NZ_CP023547_1	1.1\|6984\|60\|NZ_CP023547\|CRISPRCasFinder	6984-7043	60	NZ_CP017867	Campylobacter coli strain YF2105 plasmid pCCDM105S, complete sequence	10520-10579	1.0
NZ_CP023547_1	1.1\|6984\|60\|NZ_CP023547\|CRISPRCasFinder	6984-7043	60	NZ_CP017880	Campylobacter coli strain BG2108 plasmid pCCDM108S, complete sequence	15734-15793	1.0
NZ_CP023547_1	1.1\|6984\|60\|NZ_CP023547\|CRISPRCasFinder	6984-7043	60	NZ_CP017874	Campylobacter coli strain WA333 plasmid pCCDM33S, complete sequence	17689-17748	1.0
NZ_CP023547_1	1.1\|6984\|60\|NZ_CP023547\|CRISPRCasFinder	6984-7043	60	NZ_MH634990	Campylobacter coli strain XK3140 plasmid pCCDM140S, complete sequence	5397-5456	1.0
NZ_CP023547_1	1.1\|6984\|60\|NZ_CP023547\|CRISPRCasFinder	6984-7043	60	NZ_MH634987	Campylobacter coli strain P118 plasmid pCCDM18M, complete sequence	18818-18877	1.0
NZ_CP023547_1	1.1\|6984\|60\|NZ_CP023547\|CRISPRCasFinder	6984-7043	60	NZ_CP028188	Campylobacter coli strain CFSAN054106 plasmid pGMI16-001, complete sequence	12554-12613	1.0

1. spacer 1.1|6984|60|NZ_CP023547|CRISPRCasFinder matches to NZ_CP045792 (Campylobacter coli strain CFSAN032805 plasmid p2CFSAN032805, complete sequence) position: , mismatch: 0, identity: 1.0

gaaaattttttataaaaaatgtatatttttttaccaaaaaatgagacaaaagcaaaaaat	CRISPR spacer
gaaaattttttataaaaaatgtatatttttttaccaaaaaatgagacaaaagcaaaaaat	Protospacer
************************************************************

2. spacer 1.1|6984|60|NZ_CP023547|CRISPRCasFinder matches to NZ_CP017231 (Campylobacter jejuni strain FORC_046 isolate Not reported plasmid pFORC46.2, complete sequence) position: , mismatch: 0, identity: 1.0

gaaaattttttataaaaaatgtatatttttttaccaaaaaatgagacaaaagcaaaaaat	CRISPR spacer
gaaaattttttataaaaaatgtatatttttttaccaaaaaatgagacaaaagcaaaaaat	Protospacer
************************************************************

3. spacer 1.1|6984|60|NZ_CP023547|CRISPRCasFinder matches to NZ_CP046318 (Campylobacter coli strain FDAARGOS_735 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

gaaaattttttataaaaaatgtatatttttttaccaaaaaatgagacaaaagcaaaaaat	CRISPR spacer
gaaaattttttataaaaaatgtatatttttttaccaaaaaatgagacaaaagcaaaaaat	Protospacer
************************************************************

4. spacer 1.1|6984|60|NZ_CP023547|CRISPRCasFinder matches to NZ_CP023547 (Campylobacter coli strain CFSAN032805 plasmid pCFSAN032805_2, complete sequence) position: , mismatch: 0, identity: 1.0

gaaaattttttataaaaaatgtatatttttttaccaaaaaatgagacaaaagcaaaaaat	CRISPR spacer
gaaaattttttataaaaaatgtatatttttttaccaaaaaatgagacaaaagcaaaaaat	Protospacer
************************************************************

5. spacer 1.1|6984|60|NZ_CP023547|CRISPRCasFinder matches to NZ_CP017867 (Campylobacter coli strain YF2105 plasmid pCCDM105S, complete sequence) position: , mismatch: 0, identity: 1.0

gaaaattttttataaaaaatgtatatttttttaccaaaaaatgagacaaaagcaaaaaat	CRISPR spacer
gaaaattttttataaaaaatgtatatttttttaccaaaaaatgagacaaaagcaaaaaat	Protospacer
************************************************************

6. spacer 1.1|6984|60|NZ_CP023547|CRISPRCasFinder matches to NZ_CP017880 (Campylobacter coli strain BG2108 plasmid pCCDM108S, complete sequence) position: , mismatch: 0, identity: 1.0

gaaaattttttataaaaaatgtatatttttttaccaaaaaatgagacaaaagcaaaaaat	CRISPR spacer
gaaaattttttataaaaaatgtatatttttttaccaaaaaatgagacaaaagcaaaaaat	Protospacer
************************************************************

7. spacer 1.1|6984|60|NZ_CP023547|CRISPRCasFinder matches to NZ_CP017874 (Campylobacter coli strain WA333 plasmid pCCDM33S, complete sequence) position: , mismatch: 0, identity: 1.0

gaaaattttttataaaaaatgtatatttttttaccaaaaaatgagacaaaagcaaaaaat	CRISPR spacer
gaaaattttttataaaaaatgtatatttttttaccaaaaaatgagacaaaagcaaaaaat	Protospacer
************************************************************

8. spacer 1.1|6984|60|NZ_CP023547|CRISPRCasFinder matches to NZ_MH634990 (Campylobacter coli strain XK3140 plasmid pCCDM140S, complete sequence) position: , mismatch: 0, identity: 1.0

gaaaattttttataaaaaatgtatatttttttaccaaaaaatgagacaaaagcaaaaaat	CRISPR spacer
gaaaattttttataaaaaatgtatatttttttaccaaaaaatgagacaaaagcaaaaaat	Protospacer
************************************************************

9. spacer 1.1|6984|60|NZ_CP023547|CRISPRCasFinder matches to NZ_MH634987 (Campylobacter coli strain P118 plasmid pCCDM18M, complete sequence) position: , mismatch: 0, identity: 1.0

gaaaattttttataaaaaatgtatatttttttaccaaaaaatgagacaaaagcaaaaaat	CRISPR spacer
gaaaattttttataaaaaatgtatatttttttaccaaaaaatgagacaaaagcaaaaaat	Protospacer
************************************************************

10. spacer 1.1|6984|60|NZ_CP023547|CRISPRCasFinder matches to NZ_CP028188 (Campylobacter coli strain CFSAN054106 plasmid pGMI16-001, complete sequence) position: , mismatch: 0, identity: 1.0

gaaaattttttataaaaaatgtatatttttttaccaaaaaatgagacaaaagcaaaaaat	CRISPR spacer
gaaaattttttataaaaaatgtatatttttttaccaaaaaatgagacaaaagcaaaaaat	Protospacer
************************************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP023545

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

342408 : 350852

Synechococcus_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_057040200.1\|342408_343467_+	NAD-dependent epimerase/dehydratase family protein	M4R1H4	Synechococcus_phage	1.3e-64	39.2
WP_057040203.1\|343475_344507_+	GDP-mannose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	8.0e-144	72.4
WP_087750115.1\|344510_345530_+	dehydrogenase	A0A222YW25	Synechococcus_phage	1.3e-53	38.4
WP_002794289.1\|345517_346123_+	D-sedoheptulose 7-phosphate isomerase	A0A067XQR2	Caulobacter_phage	1.3e-13	33.8
WP_002794287.1\|346110_346794_+	NTP transferase domain-containing protein	G3MA50	Bacillus_virus	3.8e-09	24.1
WP_002794286.1\|346768_347362_+	hypothetical protein	NA	NA	NA	NA
WP_002794284.1\|347354_348650_+	HAD-IA family hydrolase	A0A2H4UUR3	Bodo_saltans_virus	5.0e-26	35.5
WP_002794282.1\|348642_349374_+	class II aldolase/adducin family protein	NA	NA	NA	NA
WP_002794280.1\|349370_350852_+	NTP transferase domain-containing protein	A0A2H4UUJ1	Bodo_saltans_virus	2.5e-53	30.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP023546

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP023547

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP023545

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection