CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP022197	Celeribacter ethanolicus strain TSPH2 plasmid unnamed, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP022196	Celeribacter ethanolicus strain TSPH2 chromosome, complete genome	2 crisprs	WYL,csa3,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DEDDh,RT,PrimPol	0	7	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP022196_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022196_1

935-1274

Orphan

Consensus_repeat	Method
ATCAGGGCCAAGGGAGGAGGAGAGG	CRISPRCasFinder
CCCAGGGAGGAGGAGNGN	CRT
ATCAGGGCCAAGGGAGGAGGAGAGG	CRISPRCasFinder

7 spacers

The CRISPR arrays of NZ_CP022196_1

>merge|NZ_CP022196|1|935-1274|CRISPRCasFinder,CRT,CRISPRCasFinder
ACCCGCGCCCAGGGAGGAGGAGGGGCACGGGTGTCTCTTGGTATCGGGCCCCAAGGGAGGAGGAGAGGACCCGTATTCTGAAAAGAAATGCGGCGGTACCAGGGAGGAGGAAGGCACCGCCGCCTTCAGTCACGACCCCTCAGGGAGGAGGAGAGAGGGACCGATTTCTTGGGCTTTCGCCCGGTATAGGTGCGACGATGCAGGGAGGAGGAAGCATCGCCGCTCTGGTCATCAGGGCCAAGGGAGGAGGAGAGGCCCCGAATTCCGGTATCTGATGCGGCAGCCCCAGGGAGGAGGAGAGGAGCTGCCGCAGGTATCAGGGCCCAGGGAGGAGGAGAGG

>NZ_CP022196|1|1|935-1003|CRISPRCasFinder
ACCCGCGCCCAGGGAGGAGGAGGGG	CACGGGTGTCTCTTGGTA
TCGGGCCCCAAGGGAGGAGGAGAGGACCCGTATTCTGAAAAGAAATGCGGCGGTACCAGGGAGGAGGAAGGCACCGCCGCCTTCAGTCACGACCCCTCAGGGAGGAGGAGAGAGGGACCGATTTCTTGGGCTTTCGCCCGGTATAGGTGCGACGATGCAGGGAGGAGGAAGCATCGCCGCTCTGGTCATCAGGGCCAAGGGAGGAGGAGAGG	CCCCGAATTCCGGTATCTGATG


>NZ_CP022196|1|1|942-1274|CRT
CCCAGGGAGGAGGAGGGG	CACGGGTGTCTCTTGGTATCGGGCC
CCAAGGGAGGAGGAGAGG	ACCCGTATTCTGAAAAGAAATGCGGCGGT
ACCAGGGAGGAGGAAGGC	ACCGCCGCCTTCAGTCACGACCC
CTCAGGGAGGAGGAGAGA	GGGACCGATTTCTTGGGCTTTCGCCCGGTATAGGTGCGACGA
TGCAGGGAGGAGGAAGCA	TCGCCGCTCTGGTCATCAGGG
CCAAGGGAGGAGGAGAGG	CCCCGAATTCCGGTATCTGATGCGGCAGC
CCCAGGGAGGAGGAGAGG	AGCTGCCGCAGGTATCAGGG
CCCAGGGAGGAGGAGAGG

>NZ_CP022196|1|2|1165-1236|CRISPRCasFinder
	CACGGGTGTCTCTTGGTA
TCGGGCCCCAAGGGAGGAGGAGAGGACCCGTATTCTGAAAAGAAATGCGGCGGTACCAGGGAGGAGGAAGGCACCGCCGCCTTCAGTCACGACCCCTCAGGGAGGAGGAGAGAGGGACCGATTTCTTGGGCTTTCGCCCGGTATAGGTGCGACGATGCAGGGAGGAGGAAGCATCGCCGCTCTGGTCATCAGGGCCAAGGGAGGAGGAGAGG	CCCCGAATTCCGGTATCTGATG
CGGCAGCCCCAGGGAGGAGGAGAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022196.1\|WP_081423845.1\|5843_6344_+\|division/cell-wall-cluster-transcriptional-repressor-MraZ	unknown	unknown	gnl\|CDD\|234728
NZ_CP022196.1\|WP_096804442.1\|1860_2964_+\|Mrp/NBP35-family-ATP-binding-protein	unknown	unknown	gnl\|CDD\|378455
NZ_CP022196.1\|WP_066705554.1\|7705_9508_+\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|223839
NZ_CP022196.1\|WP_066705556.1\|7352_7709_+\|cell-division-protein-FtsL	unknown	unknown	gnl\|CDD\|227749
NZ_CP022196.1\|WP_096804447.1\|12408_13491_+\|phospho-N-acetylmuramoyl-pentapeptide--transferase	unknown	unknown	gnl\|CDD\|234638
NZ_CP022196.1\|WP_096804441.1\|1291_1507_-\|DUF1127-domain-containing-protein	unknown	unknown	gnl\|CDD\|368980
NZ_CP022196.1\|WP_096804446.1\|10995_12399_+\|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D--alanine-ligase	unknown	unknown	gnl\|CDD\|223841
NZ_CP022196.1\|WP_096804444.1\|6345_7338_+\|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase-RsmH	unknown	unknown	gnl\|CDD\|234597
NZ_CP022196.1\|WP_096804443.1\|3206_5186_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|273807
NZ_CP022196.1\|WP_096804445.1\|9523_10996_+\|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase	unknown	unknown	gnl\|CDD\|234660

Protein	Function_ID	Function_description	E-value
NZ_CP022196.1\|WP_081423845.1\|5843_6344_+\|division/cell-wall-cluster-transcriptional-repressor-MraZ	gnl\|CDD\|234728	PRK00326, PRK00326, transcriptional regulator MraZ.	1.94342e-34
NZ_CP022196.1\|WP_096804442.1\|1860_2964_+\|Mrp/NBP35-family-ATP-binding-protein	gnl\|CDD\|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	3.8151e-143
NZ_CP022196.1\|WP_066705554.1\|7705_9508_+\|penicillin-binding-protein-2	gnl\|CDD\|223839	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane].	3.43298e-128
NZ_CP022196.1\|WP_066705556.1\|7352_7709_+\|cell-division-protein-FtsL	gnl\|CDD\|227749	COG5462, COG5462, Predicted secreted (periplasmic) protein [Function unknown].	3.64246e-07
NZ_CP022196.1\|WP_096804447.1\|12408_13491_+\|phospho-N-acetylmuramoyl-pentapeptide--transferase	gnl\|CDD\|234638	PRK00108, mraY, phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional.	0
NZ_CP022196.1\|WP_096804441.1\|1291_1507_-\|DUF1127-domain-containing-protein	gnl\|CDD\|368980	pfam06568, DUF1127, Domain of unknown function (DUF1127). This family is found in several hypothetical bacterial proteins. In some cases it represents it represents the C-terminal region whereas in others it represents the whole sequence.	9.99059e-08
NZ_CP022196.1\|WP_096804446.1\|10995_12399_+\|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D--alanine-ligase	gnl\|CDD\|223841	COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane].	4.38343e-148
NZ_CP022196.1\|WP_096804444.1\|6345_7338_+\|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase-RsmH	gnl\|CDD\|234597	PRK00050, PRK00050, 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH.	1.3564e-140
NZ_CP022196.1\|WP_096804443.1\|3206_5186_+\|TonB-dependent-receptor	gnl\|CDD\|273807	TIGR01785, Heme/hemopexin_utilization_protein_C, TonB-dependent heme/hemoglobin receptor family protein. This model represents the TonB-dependent outer membrane heme/hemoglobin receptor/transporter found in bacteria which live in contact with animals (which contain hemoglobin or other heme-bearing globins) or legumes (which contain leghemoglobin). Some species having hits to this model such as Nostoc, Caulobacter and Chlorobium do not have an obvious source of hemoglobin-like proteins in their biological niche and so the possibility exists that they act on some other substance. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	2.97826e-63
NZ_CP022196.1\|WP_096804445.1\|9523_10996_+\|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase	gnl\|CDD\|234660	PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional.	0

>NZ_CP022196.1|WP_096804441.1|1291_1507_-|DUF1127-domain-containing-protein
MAYANDIDSAAPASSTLFGGLFKSIAERVARYRVYRETVLELSDLKDRDLADLGLSRASIRAVAYEAAYGN
>NZ_CP022196.1|WP_096804442.1|1860_2964_+|Mrp/NBP35-family-ATP-binding-protein
MSADQDRIMTALAGVKLPDGTSLVERDLIRALSVREGAVSFVIEAPDAATAQALGGVEAAARARLESLPGVTKVSIVTTAHGPAAKPGPAAKPAAPAGEPPSLKIGRHPTPQQGKQGVPGVKHIIAIASGKGGVGKSTVSANLAVALARQGRKVGLLDADIYGPSQPRMMGINKRPASPDGQTIEPLHAHGVTLMSIGFMIPDGEAVVWRGPMLMGAMQQMLGQVAWGELDVLLIDMPPGTGDVQLTLGQKTELTGALVVSTPQDVALIDARRGISMFEKLKVPVLGLIENMSTYVCPNCGHEEHIFGHGGVAAEAAKLDVPLLAELPLALEARLAGDSGVPVAATDSPLAEPYMKLAERLVQVGLA
>NZ_CP022196.1|WP_096804443.1|3206_5186_+|TonB-dependent-receptor
MTMARFVALCGVSYAAFASAGFAQDAFELDMITVSLVDEGQENVEATGGALISEEELEALQPQNVSELFARESAVTVSGGAGPSKRIHVFGMEQSNLAVTVDGVPQGGTSWHHTGSNVVDPAFLKSVEVEAGAAAADAGFAAAAGAVRYETVSAFDLLAEGEVAGGRVNLTYGDNGQGLSGSLASFGVYGAVDWMVMIHAQDGDNYKAGNGEEMPGTEPAAKGILSKFGYEFGTSRLELAYERSEDDADRVIKMNMDLNHDDTVYPLDVTRDTISLKYTSTAPTDLWDPEVMIYATQNDYWRPNYVVGGRNGDMVLDDDAIGGVVKNTFTLDAGTITAGLDFAQTDYSIDNYGDVANTPRLQKLTTKQIGAFAQGRFAFASGIDLSTGLRADYHRLEDMDGQTFNDAGLSANATVSYEIVPGLEVFAGGSRTWLGYDIGEFGLMHARDYDFDADYKAGSATNFKLGFNGSLGDFSGGITYFDTKIKDLANYDSSNDEVNNSGEVRSKGVTLNGQYNWGSGRLGASYTKADVTEDGDFVIPDGGTVMPVSDVATLYVDQELPAANMTLGATVEWAGKLDDDLMESAGYEAHASYTVVNAYAEWQPPQIEGAKVRLGVDNLFDETYYERSSYVYREISATRTVYPAYASGRTVSLSLTLDF
>NZ_CP022196.1|WP_081423845.1|5843_6344_+|division/cell-wall-cluster-transcriptional-repressor-MraZ
MVGMFIGEHTFKVDGKGRVSIPADFRRELELGDPLAAETGRPRMVIVYGHDKQKQLIVHTYEGYRALASDIARLPRGSEKRKIMERMILNRARPTEVDNDGRLVLPQPLRDKIALDGVAYFAGMGETFEIWKPETHEAVDAMISEKWLEEQGEDFDPLSLLDDLEG
>NZ_CP022196.1|WP_096804444.1|6345_7338_+|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase-RsmH
MASDEKKPHIPVLLNPLLRECAPISGRWLDGTFGAGGYTKGLIAEGADHVTGVDRDPLAHEMAATWINEPPYAGKIDLVLGTFGEMDQYASGLDGVVLDLGVSSMQLDLPERGFSFMKDGPLDMRMSQDGPTAADFVNTADEAEIAEVLFHYGEEKQSRKIARAIVKDRVEKAPFTTTLQLANLIERLLPRKKPGQSHPATRSFQAIRIAVNDEFGQLIEGLEAAERALKPGGQLAVVSFHSLEDRVVKRFFQERASTGGGGSRYAPEQEVKTPGFEQLSKAIGPDADELDINPRARSARLRVGRRTTAPAVPVDRAAMGLPKPVLRSVS
>NZ_CP022196.1|WP_066705556.1|7352_7709_+|cell-division-protein-FtsL
MRGVYLILAGLVVMMLGVWAYRENYATQHVLREISQIQRDIGHQREELAVLNAEWAYLNRPDRLRDLAAINYDRLGLLPFQPEQFGRVDQIAFPQEDDLILDLTDSVDVVGSLEAIEP
>NZ_CP022196.1|WP_066705554.1|7705_9508_+|penicillin-binding-protein-2
MSIRTPLRPLARVLTARSRGENPDAIERENLRLRHEEMRDRSRLRAEGRLLVLGLCFVSAFVVVGARMGQVAATVPEEPRAEASGTPILAQRADIVDRNGRILATNRVTNSLYAQPQEMIDPVHAAEELVRIFPDLDRERLIRDFTGKRKFLWIKKKIAPEQQQAVHDIGEPGLLFGPREERLYPNGKLAAHVLGGTKFGREGVMSAEIVGQAGIEKQMDAYLRDPANGDAPLQLSLDLTVQSTVREVLDGGMRMLGAKGAAAVMMDVHTGEIIALVSLPDFDPNSRPEFFEGKDPSANPRFNRAVQGVYELGSTFKIFAAAQAMELGLATPDTQIPATPPFRWGKFRIGEFEGHNYGPFLSLRGMIVKSSNVATAHVAQQIGVERQQAFLKSLGFFEPTTVELAEAPTGKPLLPPNWSELSTLTIGYGHGLSASPLHLATAYSTLLNGGTKVTPTLLKRDGYVAPGERIVREDVSAAAREMLRAVVADPAGTASFAEVPGYRIGGKTGTADKPKPTGGYYDDKTINTFASVYPADDPKYVLIVTLDEAVETSGPKPRRTAGWTAVPVAGEVIRRTAPLMGLRPEIETPSQAGLTLTATH
>NZ_CP022196.1|WP_096804445.1|9523_10996_+|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase
MMKSLSELGLTAQSGREAQITGLSVDSRKVEEGHLFAALPGARAHGAEYLPMALSMGARAVLTDPEGARIAAGAIAEYEPALVVVEDPRQALAYAAALYYGAQPEVMVAVTGTNGKTSVATFTRQIWQLLGARAINVGTTGVEGDWQAPSPHTTPEPITLHRMLSEAAHAGVTHGAMEASSHGLAQRRLDGVRLTAAAFTNFTQDHLDYHATFEAYFSAKAGLFTRVLPEDGVAIVNIDDARGMEVEGLCAERGIDVMRVGRSDAADLRIVGQRFDATGQDLRVDFVGNIYQIRLDLIGGFQAENVMAAAGLVMASGADPEEVFSCLPELVGVRGRMQHAATRDNGAAVFVDYAHTPDAVSTAITALRPHVMGRIIAIVGAGGDRDKTKRPLMGKAAAETADLVIVTDDNPRSEDPASIRAEVLAGAPEAMEVGDRAEAILRGVDALHPGDALLICGKGHESGQTVGDTVYPFDDVEQASLAVSALDGAL
>NZ_CP022196.1|WP_096804446.1|10995_12399_+|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D--alanine-ligase
MALWTSEEAAKATGGRATQAFDISGVSIDTRTIQPGDLFVALKDVRDGHEFVAQALDKGAAAALVSRIPEGVTADAPLLIVDEVLPALERLGAAARARMTGKVIGVTGSVGKTSTKEMLRAILSGQGKTHAAEASYNNHWGVPLTLARMPADTDFAVIEIGMNHPGEIAPLAKLARPDVAMITTVAPAHMAAFESLEGIAREKSDIFKGLVPGGVAVFNGDLEVSDILAAAWDGDTIRFGEDEACAAQLTSVELSDGATQGSAVIDTTHLEFRLSTAGRHFAANAVGCLAVAYALGLDLEKAAADLVLWAPPEGRGAREQVQLAVGAPVDLIDDAFNANPTSMAAALEVLAKAEPHDTGRRIAILGDMLELGEKERAIHEGLAALPWFAAVDAVHCVGPLMRALYDALPAERCGVWFETAKDAVPALQTLVGPGDVVLVKGSKGSKVSLLVDALRELGQVPQQTDER
>NZ_CP022196.1|WP_096804447.1|12408_13491_+|phospho-N-acetylmuramoyl-pentapeptide--transferase
MLYWISSLSDGGDLFNLFRYITMRSGGAFFTALIFAMVFGRPLIDLLRRRQGRGQPIRDDGPETHFAKAGTPTMGGLLILTALLISTLLWARLDNPYVWIVMFVTFGYGLIGFADDYAKVSKSNTKGVSGKVRLVLGFLIAFIASVWSTMVHPAELQFQLALPVFKDLLINLWWFFIPFAMIVIVGAANAVNLTDGLDGLAIMPVMIAAGTLGAIAYVVGRVDFTNYLGLHYVPGTGEILVFTAALIGGGLGFLWFNAPPAAVFMGDTGSLALGGALGAIAVATKHEIVLAIVGGLFVVEALSVIIQVAYFKRTGKRVFLMAPIHHHYEKKGWSEPTIVIRFWIISLVLALIGLATLKLR

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Crispr_ID: NZ_CP022196_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022196_2

2064289-2065652

TypeI

I-C

Consensus_repeat	Method
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	PILER-CR
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	CRISPRCasFinder
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	CRT

20 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NZ_CP022196_2

>merge|NZ_CP022196|2|2064289-2065652|PILER-CR,CRISPRCasFinder,CRT
GTTTCTATCCACGCGCCCGGGTGGGGCGCGACGCGACGAGGGTGTGCCGGTGATGTACGTCGGTTGGTTTCTATCCACGCGCCCGGGTGGGGCGCGACGCGGGATACGGCCTCACCGTCTGATCCAACCATTTGTTTCTATCCACGCGCCCGGGTGGGGCGCGACCCGCATCCCCGATGATGGGGCAATCATCAACTGTGTTTCTATCCACGCGCCCGGGTGGGGCGCGACCGCAGCCTCGTCGGCGTTGGTCTTGAAAAGGACGTAGTTTCTATCCACGCGCCCGGGTGGGGCGCGACGGGATATATTTCTTTTCCCGCTGCATCATCTCTGGTTTCTATCCACGCGCCCGGGTGGGGCGCGACCAATGTCTCCCGCCGCCTCGTCCGCGTTGGTTTTGTTTCTATCCACGCGCCCGGGTGGGGCGCGACTTCATCCCGTGGTGTAAAAAAAAGTGAGGCAATGTGTTTCTATCCACGCGCCCGGGTGGGGCGCGACGTCCGACACGTTCCGTTGACCAAAGACATACTGAGTTTCTATCCACGCGCCCGGGTGGGGCGCGACGGGTTTTTGTCGATCAAACGACGATAGATACGGGCGTTTCTATCCACGCGCCCGGGTGGGGCGCGACGTTTTGAGCGGCGGGCAGATGTAATGGAGGTTTGTTTCTATCCACGCGCCCGGGTGGGGCGCGACCAAGACCAAGATCATGAGCGACATTCTGAGCTACAGTTTCTATCCACGCGCCCGGGTGGGGCGCGACCCGTGGACCCGCCCCCCATCACGCCGCGTTGGTAGTTTCTATCCACGCGCCCGGGTGGGGCGCGACCGCGGTCCACGTCGCCAAACTCTGCCGATGCAAAGTTTCTATCCACGCGCCCGGGTGGGGCGCGACGTGCTGGGCAAAGCGCTGGCGTCGTCGGGCCGGATGTTTCTATCCACGCGCCCGGGTGGGGCGCGACAATTGCGCGCGGGCATATTCCTCGCTCGTGGAGCCGTTTCTATCCACGCGCCCGGGTGGGGCGCGACAAATGTGGTGCACGGTCGTGCCCTCCATAAAGATAAAGTTTCTATCCACGCGCCCGGGTGGGGCGCGACGATCGCGTCGTCCGTCGTGCTGGCGAACGCCGGGTTTCTATCCACGCGCCCGGGTGGGGCGCGACATTCGGTTGTGTCGCAACAGATCAAGCGAGATCTGGCGTTTCTATCCACGCGCCCGGGTGGGGCGCGACGAATTGTTGGTGTCGAGACCGATACCACGAACCGGTTTCTATCCACGCGCCCGGGTGGGGCGCGACTCGGTCACGCGATGGACACCGCCGACGGACTTCGGTTTCTATCCACGCGCCCGGGTGGGGCGCGAC

>NZ_CP022196|2|1|2064289-2065652|PILER-CR
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	GCGACGAGGGTGTGCCGGTGATGTACGTCGGTTG
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	GCGGGATACGGCCTCACCGTCTGATCCAACCATTT
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	CCGCATCCCCGATGATGGGGCAATCATCAACTGT
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	CGCAGCCTCGTCGGCGTTGGTCTTGAAAAGGACGTA
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	GGGATATATTTCTTTTCCCGCTGCATCATCTCTG
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	CAATGTCTCCCGCCGCCTCGTCCGCGTTGGTTTT
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	TTCATCCCGTGGTGTAAAAAAAAGTGAGGCAATGT
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	GTCCGACACGTTCCGTTGACCAAAGACATACTGA
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	GGGTTTTTGTCGATCAAACGACGATAGATACGGGC
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	GTTTTGAGCGGCGGGCAGATGTAATGGAGGTTT
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	CAAGACCAAGATCATGAGCGACATTCTGAGCTACA
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	CCGTGGACCCGCCCCCCATCACGCCGCGTTGGTA
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	CGCGGTCCACGTCGCCAAACTCTGCCGATGCAAA
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	GTGCTGGGCAAAGCGCTGGCGTCGTCGGGCCGGAT
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	AATTGCGCGCGGGCATATTCCTCGCTCGTGGAGCC
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	AAATGTGGTGCACGGTCGTGCCCTCCATAAAGATAAA
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	GATCGCGTCGTCCGTCGTGCTGGCGAACGCCGG
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	ATTCGGTTGTGTCGCAACAGATCAAGCGAGATCTGGC
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	GAATTGTTGGTGTCGAGACCGATACCACGAACCG
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	TCGGTCACGCGATGGACACCGCCGACGGACTTCG
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC

>NZ_CP022196|2|3|2064289-2065652|CRISPRCasFinder
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	GCGACGAGGGTGTGCCGGTGATGTACGTCGGTTG
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	GCGGGATACGGCCTCACCGTCTGATCCAACCATTT
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	CCGCATCCCCGATGATGGGGCAATCATCAACTGT
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	CGCAGCCTCGTCGGCGTTGGTCTTGAAAAGGACGTA
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	GGGATATATTTCTTTTCCCGCTGCATCATCTCTG
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	CAATGTCTCCCGCCGCCTCGTCCGCGTTGGTTTT
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	TTCATCCCGTGGTGTAAAAAAAAGTGAGGCAATGT
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	GTCCGACACGTTCCGTTGACCAAAGACATACTGA
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	GGGTTTTTGTCGATCAAACGACGATAGATACGGGC
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	GTTTTGAGCGGCGGGCAGATGTAATGGAGGTTT
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	CAAGACCAAGATCATGAGCGACATTCTGAGCTACA
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	CCGTGGACCCGCCCCCCATCACGCCGCGTTGGTA
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	CGCGGTCCACGTCGCCAAACTCTGCCGATGCAAA
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	GTGCTGGGCAAAGCGCTGGCGTCGTCGGGCCGGAT
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	AATTGCGCGCGGGCATATTCCTCGCTCGTGGAGCC
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	AAATGTGGTGCACGGTCGTGCCCTCCATAAAGATAAA
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	GATCGCGTCGTCCGTCGTGCTGGCGAACGCCGG
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	ATTCGGTTGTGTCGCAACAGATCAAGCGAGATCTGGC
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	GAATTGTTGGTGTCGAGACCGATACCACGAACCG
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	TCGGTCACGCGATGGACACCGCCGACGGACTTCG
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC

>NZ_CP022196|2|2|2064289-2065652|CRT
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	GCGACGAGGGTGTGCCGGTGATGTACGTCGGTTG
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	GCGGGATACGGCCTCACCGTCTGATCCAACCATTT
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	CCGCATCCCCGATGATGGGGCAATCATCAACTGT
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	CGCAGCCTCGTCGGCGTTGGTCTTGAAAAGGACGTA
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	GGGATATATTTCTTTTCCCGCTGCATCATCTCTG
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	CAATGTCTCCCGCCGCCTCGTCCGCGTTGGTTTT
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	TTCATCCCGTGGTGTAAAAAAAAGTGAGGCAATGT
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	GTCCGACACGTTCCGTTGACCAAAGACATACTGA
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	GGGTTTTTGTCGATCAAACGACGATAGATACGGGC
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	GTTTTGAGCGGCGGGCAGATGTAATGGAGGTTT
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	CAAGACCAAGATCATGAGCGACATTCTGAGCTACA
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	CCGTGGACCCGCCCCCCATCACGCCGCGTTGGTA
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	CGCGGTCCACGTCGCCAAACTCTGCCGATGCAAA
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	GTGCTGGGCAAAGCGCTGGCGTCGTCGGGCCGGAT
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	AATTGCGCGCGGGCATATTCCTCGCTCGTGGAGCC
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	AAATGTGGTGCACGGTCGTGCCCTCCATAAAGATAAA
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	GATCGCGTCGTCCGTCGTGCTGGCGAACGCCGG
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	ATTCGGTTGTGTCGCAACAGATCAAGCGAGATCTGGC
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	GAATTGTTGGTGTCGAGACCGATACCACGAACCG
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC	TCGGTCACGCGATGGACACCGCCGACGGACTTCG
GTTTCTATCCACGCGCCCGGGTGGGGCGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022196.1\|WP_096805829.1\|2067149_2067794_-\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NZ_CP022196.1\|WP_096805828.1\|2065826_2066117_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP022196.1\|WP_096805833.1\|2076403_2078332_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP022196.1\|WP_096805827.1\|2063646_2063961_+\|TIGR02300-family-protein	unknown	unknown	gnl\|CDD\|370551
NZ_CP022196.1\|WP_096805832.1\|2073795_2074656_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|307170
NZ_CP022196.1\|WP_066710854.1\|2068717_2070529_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|378245
NZ_CP022196.1\|WP_096805826.1\|2062787_2063483_-\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|307807
NZ_CP022196.1\|WP_096805825.1\|2061552_2062023_-\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|224523
NZ_CP022196.1\|WP_096805823.1\|2059624_2060020_+\|MAPEG-family-protein	unknown	unknown	gnl\|CDD\|226211
NZ_CP022196.1\|WP_066711074.1\|2054530_2057491_+\|2-oxoglutarate-dehydrogenase-E1-component	unknown	unknown	gnl\|CDD\|236499
NZ_CP022196.1\|WP_096807199.1\|2070525_2071194_-\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
NZ_CP022196.1\|WP_066710863.1\|2066118_2067153_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP022196.1\|WP_157779822.1\|2059064_2059628_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|198380
NZ_CP022196.1\|WP_096805830.1\|2067809_2068721_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NZ_CP022196.1\|WP_157779821.1\|2054126_2054534_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022196.1\|WP_066710873.1\|2062102_2062756_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP022196.1\|WP_096805824.1\|2060110_2061505_+\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|235779
NZ_CP022196.1\|WP_066710885.1\|2057495_2059001_+\|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase	unknown	unknown	gnl\|CDD\|235571
NZ_CP022196.1\|WP_096805831.1\|2071257_2073495_-\|CRISPR-associated-endonuclease-Cas3''	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP022196.1\|WP_096807200.1\|2074849_2076199_+\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089

Protein	Function_ID	Function_description	E-value
NZ_CP022196.1\|WP_096805829.1\|2067149_2067794_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	3.52847e-49
NZ_CP022196.1\|WP_096805828.1\|2065826_2066117_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	5.58454e-36
NZ_CP022196.1\|WP_096805833.1\|2076403_2078332_+\|HAMP-domain-containing-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	3.893e-63
NZ_CP022196.1\|WP_096805827.1\|2063646_2063961_+\|TIGR02300-family-protein	gnl\|CDD\|370551	pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid). Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.	7.14523e-19
NZ_CP022196.1\|WP_096805832.1\|2073795_2074656_-\|DMT-family-transporter	gnl\|CDD\|307170	pfam00892, EamA, EamA-like transporter family. This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Members of this family usually carry 5+5 transmembrane domains, and this domain attempts to model five of these.	7.12041e-08
NZ_CP022196.1\|WP_066710854.1\|2068717_2070529_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
NZ_CP022196.1\|WP_096805826.1\|2062787_2063483_-\|M48-family-metallopeptidase	gnl\|CDD\|307807	pfam01863, DUF45, Protein of unknown function DUF45. This protein has no known function. Members are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C-terminus being the most conserved region, containing three conserved histidines. This motif is similar to that found in Zinc proteases, suggesting that this family may also be proteases.	5.53594e-64
NZ_CP022196.1\|WP_096805825.1\|2061552_2062023_-\|acyl-CoA-thioesterase	gnl\|CDD\|224523	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism].	2.57895e-58
NZ_CP022196.1\|WP_096805823.1\|2059624_2060020_+\|MAPEG-family-protein	gnl\|CDD\|226211	COG3686, COG3686, Predicted membrane protein [Function unknown].	8.39113e-17
NZ_CP022196.1\|WP_066711074.1\|2054530_2057491_+\|2-oxoglutarate-dehydrogenase-E1-component	gnl\|CDD\|236499	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed.	0
NZ_CP022196.1\|WP_096807199.1\|2070525_2071194_-\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	1.31541e-98
NZ_CP022196.1\|WP_157779822.1\|2059064_2059628_+\|hypothetical-protein	gnl\|CDD\|198380	cd00719, GIY-YIG_SF, GIY-YIG nuclease domain superfamily. The GIY-YIG nuclease domain superfamily includes a large and diverse group of proteins involved in many cellular processes, such as class I homing GIY-YIG family endonucleases, prokaryotic nucleotide excision repair proteins UvrC and Cho, type II restriction enzymes, the endonuclease/reverse transcriptase of eukaryotic retrotransposable elements, and a family of eukaryotic enzymes that repair stalled replication forks. All of these members contain a conserved GIY-YIG nuclease domain that may serve as a scaffold for the coordination of a divalent metal ion required for catalysis of the phosphodiester bond cleavage. By combining with different specificity, targeting, or other domains, the GIY-YIG nucleases may perform different functions.	0.00861298
NZ_CP022196.1\|WP_096805830.1\|2067809_2068721_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	1.21877e-132
NZ_CP022196.1\|WP_066710863.1\|2066118_2067153_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	9.81938e-176
NZ_CP022196.1\|WP_066710873.1\|2062102_2062756_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	5.11994e-32
NZ_CP022196.1\|WP_096805824.1\|2060110_2061505_+\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|235779	PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated.	0
NZ_CP022196.1\|WP_066710885.1\|2057495_2059001_+\|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase	gnl\|CDD\|235571	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase.	0
NZ_CP022196.1\|WP_096805831.1\|2071257_2073495_-\|CRISPR-associated-endonuclease-Cas3''	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	4.03791e-52
NZ_CP022196.1\|WP_096807200.1\|2074849_2076199_+\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	2.79248e-115

>NZ_CP022196.1|WP_096805827.1|2063646_2063961_+|TIGR02300-family-protein
MPKEEWGTKRLCPTTGKRFYDLNRDPIVSPYTGEIVTFDANNKSRVAIAEKVQPRNDEDLDTDDDLLLDDDADMDLDDDLLDDDDDDDNVSLDDITDVAANDDE
>NZ_CP022196.1|WP_096805826.1|2062787_2063483_-|M48-family-metallopeptidase
MREIRLPGEPPVSVTLKRSARARRLSLRVSRLDGRVTLSMPQRLPEAEAIAFVEEKQDWIRKHLAGRSPDRMPVFGAHLPFLGRELMIMPGQGRRAQVMDGALQVPGGPESVAAKVRAFLRLEAQMRLRAASDRYAEALGVGYGRITLRDPRSRWGSCTSQGNLMYSWRLVMAPPEVLDYVAAHEMAHRLEMNHSERFWAHVARICPGHKAHRDWLRREGEQLHGWRFETD
>NZ_CP022196.1|WP_066710873.1|2062102_2062756_-|GntR-family-transcriptional-regulator
MIHPSPRPTDHSSAAHDRVYRALRTRIMHGEFRPGEALTLRGIGKMFDVSMTPAREAVRRLVADGGLNLSASGRVSTPELSNERIEELAAIRALIEPELASRALPRAHIALIDRLQAINSTIAEAVAKHDDVGYIRTNLEFHRTLYLRAQAPAMLALTETVWLQLGPTMRALYARLNRTEVPHNHRLIVAALRAGDEPGLRLAVRSDVTQGLRMLAV
>NZ_CP022196.1|WP_096805825.1|2061552_2062023_-|acyl-CoA-thioesterase
MARYLEMTELMTPDMANFSGKVHGGALLKLLDLVAFSCASRYSGQYAVTLSVDQVMFKEPIHVGELVHFRATVNYVGRSSMEIGIRVEAENIRTHRVRHTNSCYFTMVAVDDDGKTVTVPQFTLETEVDKQRWRAAELRKELRREHAKRLEEAAKG
>NZ_CP022196.1|WP_096805824.1|2060110_2061505_+|dihydrolipoyl-dehydrogenase
MASYDVIIIGAGPGGYVSAIRCAQLGLKTAVVEGRETLGGTCLNVGCIPSKALLHASHLLHEAEHNFADMGLKGKSPSVDWDQMKKYKDDVIGQNTGGIEFLFKKNKIDWLKGWGSIPAVGKVKVGDEVHEAKNIIVASGSVPTALPGVEVDNDKGIVVDSTGALALPKIPKKMVVIGAGVIGLELGSVYARLGAEVTVVEYMDFITPGMDGEVQRQFQKILGKQGFTFILGAAVSGVEASKTKAKVNYKLKKDDSEHSLDADVVLVATGRKPFTDGLGLAELGVEFTPRGQIKTDAHWATNVPGIYAIGDAIVGPMLAHKAEDEGMAVAEVLAGKHGHVNYDVIPGVIYTTPEVASVGKTEQQLKEEGRAIKVGKFSFMGNARAKAVHQGEGFVKLIVDKDTDRVLGCHIIGPGAGDLIHEICVAMEFGASAQDIALTCHAHPTFSEAVREAALACGDGAIHA
>NZ_CP022196.1|WP_096805823.1|2059624_2060020_+|MAPEG-family-protein
MTPLLTLLALAGLLHIAQFVVASYMANVDLGPGYTTSPRDRAPSREMRPATGRMLRAYDNHIQMFPFFAAGVFLIHLTDQSSAVTLGAAWVYLIARVLYVPAYAFGWQPWRSYIWMLAMLCCATLFIAALV
>NZ_CP022196.1|WP_157779822.1|2059064_2059628_+|hypothetical-protein
MSSIKCYGVHYELEMVEKNNFNIFGWEPTYEDWRSEPRDPEFVLNDQRGVYILQDVNRTPLYVGRVGTGKKRLGNRLWDHTRNDNRKRWTHFSWFGLNEPSPYQPAENASITTSDLGVVSLENKDETSLEELEAFLISAIDPPLNKKGGDWGSARKILQWSPWEKVSLSELSEELHKLRRELKKISQ
>NZ_CP022196.1|WP_066710885.1|2057495_2059001_+|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase
MSVEVRVPTLGESVTEATVATWFKKPGDTVAVDEMLCELETDKVTVEVPSPAAGVLGEIVAAEGETVGVDALLATLNEEGNAGPEEVAPRHHSEMMEDKPAAAGAAATVDVMVPTLGESVTEATVATWFKAVGDSVAADEMLCELETDKVSVEVPAPAAGVLTAILAAEGATVAAGGKLAEMSAGAGAVAAAPAPAAAPAAPAGDKDIENAPSANKLMAEKGINPASVSGTGKDGRIMKEDVLKAMTSAPAGTPAPVAAPRAPVAADDAAREERVKMTKLRQTIAKRLKESQNTAAMLTTYNEVDMTEVMALRNQYKDQFEKKHGVRLGFMSFFTKACVHALKEVPEVNAEIDGTDIVYKNYVHMGVAAGTPQGLVVPVIRDADSMSFAEIEKAIAEKGRRARDGKLSMAEMQGGTFTISNGGVYGSLMSSPILNPPQSGILGMHKIQDRPMAINGQVVIRPMMYLALSYDHRIVDGKGAVTFLVRVKEALEDPRRLLMDL
>NZ_CP022196.1|WP_066711074.1|2054530_2057491_+|2-oxoglutarate-dehydrogenase-E1-component
MNDQSPNDIFHASSFMQGHNAEYLEQVYANYVQDPASVDASWAEFFQSLGDAANDVTAEAAGPSWARMDWPPVPNDDLTHALDGQWAEPVAAEKKIKEKAAEKGVAVSEDAVKRAVLDSVRAIMIIRAYRIRGHLIADLDPLKMRDEAPHPELDPRSYGFTEADMDRPIFIDNVLGLTHASMRQILDVLKRTYCGTFALQYMHISNPEEAGWLKERIEGFGKEIQFTKNGRRAILNKLVEAEGFEKFLHVKYMGTKRFGLDGGEALIPAMEQIIKRGGNLGAKEIVIGMPHRGRLSVLANVLSKPYRAIFNEFQGGSFKPEDVDGSGDVKYHLGASSDREFDGNKVHLSLTANPSHLEAVNPVVLGKARAKTDQNNDPTRSTVIPVLLHGDAAFAGQGVVAECFGLSGLRGHRTGGTIHIVVNNQIGFTTAPHFSRSSPYPTDIALMVEAPIFHVNGDDPEAVVHAAKVATEFRQKFHKDVVIDIFCYRRFGHNEGDEPMFTNPQMYTNIKRHKTTLQLYTERLVADGLIPEGEIEDMKAAFQALLNEEFEAGKTFKPNKADWLDGRWSHLDKEGEEYQRGQTAISEETMAQVGRSLTTSPSDFNIHKTVARQLEAKAQMFETGEGFDWATGEALAFGSLLTEGYPVRLAGQDSTRGTFSQRHSGLIDQKSEERYYPLNHIREGQAHYEVIDSMLSEYAVLGFEYGYSLAEPNALTLWEAQFGDFANGAQIMFDQFISSGERKWLRMSGLVMLLPHGFEGQGPEHSSARLERFLQLSAEDNWIVANCTTPANYFHILRRQLHRSYRKPLVLMTPKSLLRHKLATSTAKDFLEGSSFHRVLWDDADANFGTAKSDLKLKADKDIKRVVICSGKVYYDLLEARDAAGKDDTYILRLEQFYPFPALSMVKELERFKNAEIVWCQEEPKNQGGWTFVEPNIEWVLTRIGAKHTRPVYAGRAASASPATGLASQHKAQQTALVNDALNIEG
>NZ_CP022196.1|WP_157779821.1|2054126_2054534_+|hypothetical-protein
MGFAYAIGLSAVLASSGVLLVYLANSGIFPLIGFAFLLWSLKERLSIIGKSPWLILVPIVVTLAAALLYLIYLWIYLDHTGIPCSGCKWQDEPTILRLGANFGLSILAIASWIALIAICMFSTSINQTRNNGGTK
>NZ_CP022196.1|WP_096805828.1|2065826_2066117_-|CRISPR-associated-endonuclease-Cas2
MLVLITYDVRTDTPAGRKRLRQVARACEDYGQRVQYSVFECDLPPALWTALRARLTALIEPEHDSLRFYMFGANWRSKVEHVGAKPATDFDGPLIF
>NZ_CP022196.1|WP_066710863.1|2066118_2067153_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MKKLLNTLYVTSEGASLRKEGQAVVIAIDGHDRGRAPAHLLGQIVCFAQAVISPPLMAFCAESGISIAFLSTTGRFLARVEGPQTGNVLLRRAQHRMTDDPERALPVAQAMVAAKIANQRGLLRRGLRDYGKAMGPEPYALLDGCERRLSDAARLALDAPDLDSLRGQEGEAANAYFTAFPQVLRNPDFSFQGRNRRPPRDPVNAVLSLLYALLAQDCRAACETHGLDPQMGFLHRDRPGRMSLALDLMEEFRAPLADRTCLTLLNRRQLSVRDFRPEETGAVLLSDEGRETVLKAWQDRKRETVRHPFFEETVPLGLFPQMQAQLLARHLRGELDGYPAWIWR
>NZ_CP022196.1|WP_096805829.1|2067149_2067794_-|CRISPR-associated-protein-Cas4
METAEQMSLPISALQHWLYCPRQCALIHVERLWAENSLTAEGRVLHARADGGTTDRHKGIRTLRAVELGSERLGLHGVADVVEVHGDRFYPVEYKRGRPKPHQADEVQLCAQALCLEEMTGQAVPEGALFYGETRRRVVVAFDRDLRSLTSSVADEARSALAQGELPPAHYAPGRCKACSLLELCRPQSLEHPPAIRAWLSRALDSDTVPEGPE
>NZ_CP022196.1|WP_096805830.1|2067809_2068721_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MTALTNRYDFALFFTVKDGNPNGDPDAGNLPRMDPETNNGLVTDVALKRKVRNYVNMLERPGYAIFIKEKEPLNKKIAEACEVKELPTFQNTSGKWETKLAKTRSQEDIRLLQEWLCAQYYDIRAFGAVMSTGPNAGQVRGPIQLGFARSVEPIMPLELTITRVTDVDKEEGEMGRKHIVPFGLYVVHGFINAKLAEKTGFSDEDLDLFWTALRDMFDFDRSAARGEMAAQDLVIFKHDSALGNAQAHRLFERIEVFRKSGEDTVPVGDPRSHNWPPARAFSDYEIRVNDTDLPSGVTLLRPW
>NZ_CP022196.1|WP_066710854.1|2068717_2070529_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MTILSALAALYERMEEAGEAPAPGYSTEKIGAELVIDAEGQLIAWHSLMTQDGKRMVPENLSVPAAIKRSSGIAPNFLWDKTSYVLGVTALKDEKKKPLADAEGRLQPCQERRTADEHAHFVALHRERLGGAEDPGLLALLIFLDHWNWEDFSGRGLPSEMLDQNVVFSFEARGQYLHRRAAARALIACAPEAKGPLCLVTGAQAAPARLHPSIKGVMGSQSSGASLVSFNASAFESFGHKQGDNAPVSEHAAFAYGTALNALLARSGKAGRRTLRIGETTAVFWAETDRRETDEAAEMAFADFFDPPDTEAMSEDEKTAHRKLQITMEALARGSAPDDPRFAPSTRVYVLGLAPNAARLSVRFWLPGTLGDFARHVERFREDLRIEPAPWRRPPAVWALLYETALQHKAENIPPRLGGDLMRAVLMGTPYPRTLLSAVIGRIRADGVINGARAAICKAVLTRNLKEEFPVSLDPDNPSPAYRLGRLFAVLESIQQAALPGLNATIRDRYFAAASATPARVFPLLTKTATHHLANLRKSDKGGLAYWFDEQIGEIWSGLDPNLPGSLTLEDQGRFVAGYYHQKFYKKPKDAESDLSVVEGETT
>NZ_CP022196.1|WP_096807199.1|2070525_2071194_-|type-I-C-CRISPR-associated-protein-Cas5
MSYGLKLLIKGDYACFTRPEMKVERVSYDVMTPSAARGVIEAIHWKPAIRWVIDRIHVLAPVRFENIRRNEIASKISASTVKTAMKARTVSGLHLNVDEDRQQRAMMALRHVVYGVEAHLEMTPRAGAEDNPAKHIEMARRRAEKGQHFHQPCLGVREFPADVTLVEEFPESTLPEAERNRDLGWMLYDIAYDRGREAMFFHARLEDGVIDLEKARQEGLAR
>NZ_CP022196.1|WP_096805831.1|2071257_2073495_-|CRISPR-associated-endonuclease-Cas3''
MIYAHSLPDRSTDLWETLFDHSAAVAHAARRNAAGFAPQMAEILGWAHDLGKMKPRFQARLNDPAIHEPHAGVGARYLYFRQPGLLSTVMAQVVLGHHAGLADGGDAGRIFQARLEEEAEITPPDDWNIPGMTEFPMPLRGLGRGEVNYPVTFLGRMLFSALVDADRSETRAFYQRAEGRVVCEPVAVSLTELRDRLDAHMAQMSGEGAVNALRQDIHRHVRDRAGCDPGLFSLTVPTGGGKTLAALGFALDHAIRHGQARVIFVIPYTSIVEQTAAVFREVLGDPEGEIVLEHHSAFDWPGQGDDEARDLKTAAERWDRSVIVTTAVQFFESLHAARTSPCRKLHRIANAVVILDEAQTLPRHLLRPSLAAIRELARGYRSSLVLCTATQPAVLQEDKFPHPEALSRGGGLPLRELAPDPAALYEALKRVRVEQAGGLDNAALAGRLSKGEGGLAILNNRRQARAVFDLLRACPHAFHLSTNMTARHRRAVLETVRQELREGAPVRLVSTSLIEAGVDVSFPTVYRALAGLDSIVQAAGRCNRNAEREELGRVVVFEAEAGEGFSPPMELQQMAEVTRRVLELFPDDPLSLEAVRSYFAEVFWEKKQKMDAGKVDGREYPILSGIAEAGDKEGMPYGSVAKAFRMIPEGALPVVIRGGDWGVPEAEWQTMQHVVSAGAVARGLQSYQVQVPRQVRQKMLGAGLLAVLRPEEFGDQFLILDRPELYDPETGLKWDDWDDLGFLSF
>NZ_CP022196.1|WP_096805832.1|2073795_2074656_-|DMT-family-transporter
MDRKLTGWGSGGIGVLIFSGSLPATRVAVAEFEPLFLTSARAVIAALLGVLCLAVLRQSRPERSDLVALAVVALGVVIGFPLLTALALQSITAARSIVFIGLLPLSTALFGVLRGGERPKPGFWLFSLLGAATVSGFALTQSTSGALRGDLWMLAAIAVCGLGYAEGATLSRRLGGWQVISWALLIACPVMVGVMRITWPAALTTISPAAWGSLGYVAVFSMMLGFVFWYRGLALGGIAQVGQLQLLQPFFGFLLAGLLLHEPIAWQMIACAVLTVLCVAGARQLA
>NZ_CP022196.1|WP_096807200.1|2074849_2076199_+|PLP-dependent-aminotransferase-family-protein
MQALRDRIASRALGPGDRMPSVRRFAAQMNVSPSTVVEAYDRLTAEGMIRSRPGSGFYVTNTHLPPMKVAGMGPPRARNVDPFWVSRQSLDARPGTLQPGCGWLPEDWMPQDALRKGLRALAKSDAALLTNYASARGSETLRRCLLGRFAEDHLSPTPGQLMLTASASQAMDLICRLLLRPGDTVLVDDPGYFNFHALLRTHQVRIVSIPYTHDGPDLTAFQSALSGAPRLYITNSALHNPTGATLSPQVAHRLLSLTAQTDLTIVEDDTFADLEPDPSPRLAVLDGLNRVLRIGGFSKTLSASVRCGYIAGRADWIEALVDLQVATSFGGPSPVATELLAQVLTGGSYRKHIAELHRRLARARKTAITRLAPLGITPWVLPQGGFYLWCRFPEGTDTGQVAQRAMEAAVMLAPGNVFSPSQTAASFMRFNVTQMDAPRVYDVLAAAMR
>NZ_CP022196.1|WP_096805833.1|2076403_2078332_+|HAMP-domain-containing-protein
MLRAHLSKLSTRIYAIVAVAVIMIAALTQIILNIAYDSAFSMREQHLSDVVDTAISSLEELQQDVQSGALTPEEARDTGREVLMGLRYDETGYFFALDFNNRMIAHPIKTEWIGQDQSDYTDTRGTQIFVAMSDVAKAQGGGTITYFFDKPDGSGDEEKISYVKTFEPWGWIVGTGSYLSDIHAQLAWMTKIGYGVLIATLVILLTISTLLVRSVTRPLDAIKLRMSHMSEGDTETPVPMTEAENEIGQMARVLEVFRLALVERAELEKAQTAKDAELAREREENAERERQAHLREEAAEAKRREEQDAARQEKEKAREAAEREREKNLQEQQRVVSSLAEGLGAMSRGDLTVRIEESFPESYEKLRNDFNDAVEKIARLAGTIVEGTTTIIYETDNLNSAAIDLSRRTETQAASLEETAAAITELAASVDSSAKSARDAATTVGQTKQRSMAGRDVVQRTVKAMSDIAESSTQISKITSVIDDIAFQTNLLALNAGVEAARAGESGRGFAVVASEVRALAQRSSEAANEIAKLIETSGRQVDEGVELVNASGDALVEIETLVSNLDALMSTIATSASEQSVGLSEITTAVGQLDQVTQHNAAMFEETTAALQSLKAQATALERDSSQLKTRQNDEAVRLAS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP022196_1	1.3\|1003\|29\|NZ_CP022196\|CRT	1003-1031	29	NC_009444	Pseudomonas fluorescens SBW25 plasmid pQBR103, complete sequence	180761-180789	7	0.759
NZ_CP022196_2	2.6\|2064654\|34\|NZ_CP022196\|PILER-CR,CRISPRCasFinder,CRT	2064654-2064687	34	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	977080-977113	7	0.794
NZ_CP022196_2	2.6\|2064654\|34\|NZ_CP022196\|PILER-CR,CRISPRCasFinder,CRT	2064654-2064687	34	NZ_CP021767	Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence	977053-977086	7	0.794
NZ_CP022196_2	2.6\|2064654\|34\|NZ_CP022196\|PILER-CR,CRISPRCasFinder,CRT	2064654-2064687	34	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	977087-977120	7	0.794
NZ_CP022196_2	2.6\|2064654\|34\|NZ_CP022196\|PILER-CR,CRISPRCasFinder,CRT	2064654-2064687	34	CP047139	Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence	906650-906683	7	0.794
NZ_CP022196_2	2.6\|2064654\|34\|NZ_CP022196\|PILER-CR,CRISPRCasFinder,CRT	2064654-2064687	34	CP047137	Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence	867380-867413	7	0.794
NZ_CP022196_2	2.12\|2065052\|34\|NZ_CP022196\|PILER-CR,CRISPRCasFinder,CRT	2065052-2065085	34	NZ_CP010858	Marinovum algicola DG 898 plasmid pMaD3	18799-18832	7	0.794
NZ_CP022196_2	2.20\|2065587\|34\|NZ_CP022196\|PILER-CR,CRISPRCasFinder,CRT	2065587-2065620	34	MN369765	Microbacterium phage Zanella, complete genome	9116-9149	7	0.794
NZ_CP022196_2	2.12\|2065052\|34\|NZ_CP022196\|PILER-CR,CRISPRCasFinder,CRT	2065052-2065085	34	NZ_CP029777	Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence	315678-315711	9	0.735
NZ_CP022196_2	2.20\|2065587\|34\|NZ_CP022196\|PILER-CR,CRISPRCasFinder,CRT	2065587-2065620	34	NC_013857	Azospirillum sp. B510 plasmid pAB510c, complete sequence	194565-194598	9	0.735
NZ_CP022196_2	2.1\|2064321\|34\|NZ_CP022196\|PILER-CR,CRISPRCasFinder,CRT	2064321-2064354	34	MN945904	Mycobacterium phage Eponine, complete genome	21336-21369	10	0.706
NZ_CP022196_2	2.12\|2065052\|34\|NZ_CP022196\|PILER-CR,CRISPRCasFinder,CRT	2065052-2065085	34	NZ_AP022339	Mameliella alba strain KU6B plasmid pKUB112, complete sequence	50163-50196	10	0.706
NZ_CP022196_2	2.15\|2065251\|35\|NZ_CP022196\|PILER-CR,CRISPRCasFinder,CRT	2065251-2065285	35	NZ_CP017078	Novosphingobium resinovorum strain SA1 plasmid pSA3, complete sequence	337384-337418	10	0.714
NZ_CP022196_2	2.5\|2064588\|34\|NZ_CP022196\|PILER-CR,CRISPRCasFinder,CRT	2064588-2064621	34	MK448431	Streptococcus satellite phage Javan325, complete genome	1653-1686	11	0.676
NZ_CP022196_2	2.5\|2064588\|34\|NZ_CP022196\|PILER-CR,CRISPRCasFinder,CRT	2064588-2064621	34	MK448441	Streptococcus satellite phage Javan339, complete genome	1650-1683	11	0.676

1. spacer 1.3|1003|29|NZ_CP022196|CRT matches to NC_009444 (Pseudomonas fluorescens SBW25 plasmid pQBR103, complete sequence) position: , mismatch: 7, identity: 0.759

acccgtattctgaaaagaaatgcggcggt	CRISPR spacer
ctccaacttctgaaaagaaatgccgcggc	Protospacer
 .**.  **************** ****.

2. spacer 2.6|2064654|34|NZ_CP022196|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.794

caatgtctcccgccgcctcgtccgcgttggtttt	CRISPR spacer
caatccgctccgccacctcgtccgcgttgctttt	Protospacer
**** . ..*****.************** ****

3. spacer 2.6|2064654|34|NZ_CP022196|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021767 (Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.794

caatgtctcccgccgcctcgtccgcgttggtttt	CRISPR spacer
caatccgctccgccacctcgtccgcgttgctttt	Protospacer
**** . ..*****.************** ****

4. spacer 2.6|2064654|34|NZ_CP022196|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.794

caatgtctcccgccgcctcgtccgcgttggtttt	CRISPR spacer
caatccgctccgccacctcgtccgcgttgctttt	Protospacer
**** . ..*****.************** ****

5. spacer 2.6|2064654|34|NZ_CP022196|PILER-CR,CRISPRCasFinder,CRT matches to CP047139 (Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.794

caatgtctcccgccgcctcgtccgcgttggtttt	CRISPR spacer
caatccgctccgccacctcgtccgcgttgctttt	Protospacer
**** . ..*****.************** ****

6. spacer 2.6|2064654|34|NZ_CP022196|PILER-CR,CRISPRCasFinder,CRT matches to CP047137 (Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.794

caatgtctcccgccgcctcgtccgcgttggtttt	CRISPR spacer
caatccgctccgccacctcgtccgcgttgctttt	Protospacer
**** . ..*****.************** ****

7. spacer 2.12|2065052|34|NZ_CP022196|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010858 (Marinovum algicola DG 898 plasmid pMaD3) position: , mismatch: 7, identity: 0.794

ccgtggacccgccccccatcacgccgcgttggta	CRISPR spacer
ccatggacccgccccccatcatgccgcctgcgat	Protospacer
**.******************.***** *  *

8. spacer 2.20|2065587|34|NZ_CP022196|PILER-CR,CRISPRCasFinder,CRT matches to MN369765 (Microbacterium phage Zanella, complete genome) position: , mismatch: 7, identity: 0.794

tcggtcacgcgatggacaccgcc--gacggacttcg	CRISPR spacer
tcggtgacgcggtggacaccgccgagaccgacgc--	Protospacer
***** *****.***********  *** *** .

9. spacer 2.12|2065052|34|NZ_CP022196|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029777 (Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.735

ccgtggacccgccccccatcacgccgcgttggta	CRISPR spacer
tcgtggagccgccccccaccacgccggtcagtca	Protospacer
.****** **********.*******  . * .*

10. spacer 2.20|2065587|34|NZ_CP022196|PILER-CR,CRISPRCasFinder,CRT matches to NC_013857 (Azospirillum sp. B510 plasmid pAB510c, complete sequence) position: , mismatch: 9, identity: 0.735

tcggtcacgcgatggacaccgccgacggacttcg	CRISPR spacer
tgcgtgccgcgatggacgccgccgacgggctgat	Protospacer
*  **  **********.**********.**

11. spacer 2.1|2064321|34|NZ_CP022196|PILER-CR,CRISPRCasFinder,CRT matches to MN945904 (Mycobacterium phage Eponine, complete genome) position: , mismatch: 10, identity: 0.706

gcgacgagggtgtgccggtgatgtacgtcggttg	CRISPR spacer
cgtagtcgggtgcgccggtgatgttcgtcggcgg	Protospacer
   *   *****.*********** ******. *

12. spacer 2.12|2065052|34|NZ_CP022196|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022339 (Mameliella alba strain KU6B plasmid pKUB112, complete sequence) position: , mismatch: 10, identity: 0.706

ccgtggacccgccccccatcacgccgcgttggta	CRISPR spacer
tcatggacccgccccccatcatgctgctcccgcc	Protospacer
.*.******************.**.** .. *.

13. spacer 2.15|2065251|35|NZ_CP022196|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017078 (Novosphingobium resinovorum strain SA1 plasmid pSA3, complete sequence) position: , mismatch: 10, identity: 0.714

aattgcgcgcgggcatattcctcgctcgtggagcc	CRISPR spacer
ccatgcgcgcgcgcataatcctcgctcgtgaccag	Protospacer
   ******** ***** ************.

14. spacer 2.5|2064588|34|NZ_CP022196|PILER-CR,CRISPRCasFinder,CRT matches to MK448431 (Streptococcus satellite phage Javan325, complete genome) position: , mismatch: 11, identity: 0.676

gggatatatttcttttcccgctgcatcatctctg	CRISPR spacer
atcatataactcttttcccgctgcatctagcatt	Protospacer
.  ***** .*****************   . *

15. spacer 2.5|2064588|34|NZ_CP022196|PILER-CR,CRISPRCasFinder,CRT matches to MK448441 (Streptococcus satellite phage Javan339, complete genome) position: , mismatch: 11, identity: 0.676

gggatatatttcttttcccgctgcatcatctctg	CRISPR spacer
atcatataactcttttcccgctgcatctagcatt	Protospacer
.  ***** .*****************   . *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1304400 : 1334270

Paracoccus_phage(26.67%)

protease,capsid,tail,portal,head,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096805313.1\|1304400_1305666_+\|tRNA	tyrosine--tRNA ligase	K4F5T3	Cronobacter_phage	2.2e-66	37.6
WP_096805314.1\|1305773_1306622_+	hypothetical protein	NA	NA	NA	NA
WP_096805315.1\|1306673_1307231_-	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	2.3e-44	59.9
WP_096805316.1\|1307223_1307730_-	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	2.1e-44	62.8
WP_096805317.1\|1307912_1309100_+	phosphoglycerate kinase	NA	NA	NA	NA
WP_096805318.1\|1309375_1310269_+	fructose bisphosphate aldolase	A0A0K0KVJ8	Prochlorococcus_phage	1.6e-07	24.6
WP_066710702.1\|1310502_1310805_+	septum formation initiator precursor	NA	NA	NA	NA
WP_066710827.1\|1310878_1311451_+	lytic transglycosylase	NA	NA	NA	NA
WP_157779771.1\|1311454_1311751_-	hypothetical protein	NA	NA	NA	NA
WP_096805319.1\|1311974_1313000_+	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	NA	NA	NA	NA
WP_096805320.1\|1313018_1314386_+	pyruvate dehydrogenase complex E1 component subunit beta	NA	NA	NA	NA
WP_096805321.1\|1314398_1315694_+	pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase	NA	NA	NA	NA
WP_096805322.1\|1315815_1316697_+	hypothetical protein	NA	NA	NA	NA
WP_066710717.1\|1316842_1317178_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_096805323.1\|1317199_1318036_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_066710723.1\|1318058_1318880_-	serine O-acetyltransferase	NA	NA	NA	NA
WP_096805324.1\|1319001_1319718_-	DUF2793 domain-containing protein	A0A0B5A0F6	Paracoccus_phage	1.1e-19	40.7
WP_096805325.1\|1319710_1323628_-	host specificity protein	A0A0B5A7K5	Paracoccus_phage	1.0e-231	37.4
WP_096805326.1\|1323627_1324083_-	peptidase	F4YXU4	Roseobacter_phage	3.1e-31	49.6
WP_096805327.1\|1324094_1325018_-	DUF2163 domain-containing protein	A0A0K0PVK1	Roseobacter_phage	6.0e-58	40.4
WP_096805328.1\|1325017_1325650_-	DUF2460 domain-containing protein	A0A0B5A2K3	Paracoccus_phage	3.1e-58	50.0
WP_096805329.1\|1325689_1326370_-\|tail	phage tail tape measure protein	A0A0A7DVI6	Escherichia_phage	4.0e-11	37.3
WP_096805330.1\|1326362_1326590_-\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_096805331.1\|1326608_1326923_-	gene transfer agent family protein	NA	NA	NA	NA
WP_066710745.1\|1326926_1327340_-\|tail	phage major tail protein, TP901-1 family	A0A1Q1PW44	Pseudoalteromonas_phage	1.0e-04	32.8
WP_096805332.1\|1327364_1327775_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_096805333.1\|1327771_1328113_-\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_096805334.1\|1328112_1328709_-	hypothetical protein	NA	NA	NA	NA
WP_096807151.1\|1328882_1330052_-\|capsid	phage major capsid protein	A0A2D1GNH4	Pseudomonas_phage	6.9e-67	40.6
WP_096805335.1\|1330151_1330739_-\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	1.5e-33	50.3
WP_096805336.1\|1330740_1332033_-\|portal	phage portal protein	W8ECU7	Geobacillus_phage	2.1e-61	39.2
WP_096805337.1\|1332387_1332858_+	hypothetical protein	NA	NA	NA	NA
WP_096805338.1\|1332860_1334270_-	DNA-packaging protein	A0A0K1LMR9	Caulobacter_phage	1.4e-74	40.0

DBSCAN-SWA_2

2547152 : 2554417

Enterobacteria_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096806117.1\|2547152_2548028_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.7e-92	58.2
WP_096806118.1\|2548024_2548876_-	dTDP-4-dehydrorhamnose reductase	A0A1D7XFA3	Escherichia_phage	3.5e-36	40.2
WP_096806119.1\|2548872_2549922_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.1e-92	51.4
WP_066703293.1\|2549918_2550479_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	6.0e-37	43.9
WP_096806120.1\|2550648_2551620_-	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	3.9e-140	75.9
WP_096806121.1\|2551630_2553754_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	3.8e-209	52.2
WP_066703306.1\|2553735_2554191_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	NA	NA	NA
WP_066703309.1\|2554195_2554417_-	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	2.5e-15	54.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP022196

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection