CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP031449	Pseudomonas aeruginosa strain 97 chromosome, complete genome	4 crisprs	csa3,DEDDh,DinG,WYL,cas3	2	0	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP031449_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP031449_1

357074-357187

Orphan

Consensus_repeat	Method
GGCCAAAGAACTGGAGGGCAAGGTATGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP031449_1

>merge|NZ_CP031449|1|357074-357187|CRISPRCasFinder
GGCCAAAGAACTGGAGGGCAAGGTATGAGCCAGCACAGCGTATCCCGCTCCGTATCCCGTTCAACAGGCTCTCCATCCAGAAGCGTGGCCAAAGAACTGGAGGGCAAGGTATGA

>NZ_CP031449|1|1|357074-357187|CRISPRCasFinder
GGCCAAAGAACTGGAGGGCAAGGTATGA	GCCAGCACAGCGTATCCCGCTCCGTATCCCGTTCAACAGGCTCTCCATCCAGAAGCGT
GGCCAAAGAACTGGAGGGCAAGGTATGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP031449.1\|WP_003118141.1\|353886_354984_+\|spermidine-binding-periplasmic-protein-SpuE	unknown	unknown	gnl\|CDD\|270377
NZ_CP031449.1\|WP_003084310.1\|360614_360764_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031449.1\|WP_003118762.1\|362367_362979_-\|thiol-disulfide-isomerase	unknown	unknown	gnl\|CDD\|239267
NZ_CP031449.1\|WP_003084327.1\|365537_366092_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031449.1\|WP_003112938.1\|348661_349414_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|336781
NZ_CP031449.1\|WP_003084297.1\|350878_352249_+\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|180994
NZ_CP031449.1\|WP_073652071.1\|362977_363997_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225176
NZ_CP031449.1\|WP_003112945.1\|366357_366852_+\|DUF523-domain-containing-protein	unknown	unknown	gnl\|CDD\|224597
NZ_CP031449.1\|WP_003112942.1\|361759_362263_-\|transcriptional-regulator	unknown	unknown	unknown
NZ_CP031449.1\|WP_003084303.1\|355038_356193_+\|polyamine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|183226
NZ_CP031449.1\|WP_003084290.1\|349454_350813_+\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NZ_CP031449.1\|WP_003084320.1\|364016_364769_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031449.1\|WP_042853721.1\|358230_360618_-\|penicillin-amidase	unknown	unknown	gnl\|CDD\|225241
NZ_CP031449.1\|WP_003111119.1\|343953_344832_-\|N-carbamoylputrescine-amidase	unknown	unknown	gnl\|CDD\|274553
NZ_CP031449.1\|WP_003118764.1\|364817_365516_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226274
NZ_CP031449.1\|WP_003104504.1\|342761_343868_-\|agmatine-deiminase	unknown	unknown	gnl\|CDD\|184135
NZ_CP031449.1\|WP_003084299.1\|352364_353468_+\|putrescine-binding-periplasmic-protein-SpuD	unknown	unknown	gnl\|CDD\|270377
NZ_CP031449.1\|WP_003104500.1\|339660_340632_+\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_CP031449.1\|WP_003084265.1\|341244_342627_+\|porin	unknown	unknown	gnl\|CDD\|335381
NZ_CP031449.1\|WP_003112941.1\|360728_361781_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378890

Protein	Function_ID	Function_description	E-value
NZ_CP031449.1\|WP_003118141.1\|353886_354984_+\|spermidine-binding-periplasmic-protein-SpuE	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NZ_CP031449.1\|WP_003118762.1\|362367_362979_-\|thiol-disulfide-isomerase	gnl\|CDD\|239267	cd02969, PRX_like1, Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.	0.00342131
NZ_CP031449.1\|WP_003112945.1\|366357_366852_+\|DUF523-domain-containing-protein	gnl\|CDD\|224597	COG1683, COG1683, Uncharacterized conserved protein [Function unknown].	2.14015e-67
NZ_CP031449.1\|WP_003112938.1\|348661_349414_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	gnl\|CDD\|336781	pfam07722, Peptidase_C26, Peptidase C26. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyze the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to pfam00117, but contain extensions in four loops and at the C-terminus.	1.81471e-108
NZ_CP031449.1\|WP_003084297.1\|350878_352249_+\|aspartate-aminotransferase-family-protein	gnl\|CDD\|180994	PRK07480, PRK07480, putative aminotransferase; Validated.	0
NZ_CP031449.1\|WP_073652071.1\|362977_363997_+\|alpha/beta-hydrolase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	1.7248e-56
NZ_CP031449.1\|WP_003084303.1\|355038_356193_+\|polyamine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|183226	PRK11607, potG, putrescine ABC transporter ATP-binding subunit PotG.	0
NZ_CP031449.1\|WP_003084290.1\|349454_350813_+\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	5.71424e-158
NZ_CP031449.1\|WP_042853721.1\|358230_360618_-\|penicillin-amidase	gnl\|CDD\|225241	COG2366, COG2366, Protein related to penicillin acylase [General function prediction only].	0
NZ_CP031449.1\|WP_003111119.1\|343953_344832_-\|N-carbamoylputrescine-amidase	gnl\|CDD\|274553	TIGR03381, putative_carbon-nitrogen_hydrolase, N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one. [Central intermediary metabolism, Polyamine biosynthesis].	0
NZ_CP031449.1\|WP_003118764.1\|364817_365516_+\|hypothetical-protein	gnl\|CDD\|226274	COG3751, EGL-9, Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones].	2.81845e-78
NZ_CP031449.1\|WP_003104504.1\|342761_343868_-\|agmatine-deiminase	gnl\|CDD\|184135	PRK13551, PRK13551, agmatine deiminase; Provisional.	0
NZ_CP031449.1\|WP_003084299.1\|352364_353468_+\|putrescine-binding-periplasmic-protein-SpuD	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NZ_CP031449.1\|WP_003104500.1\|339660_340632_+\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.38282e-59
NZ_CP031449.1\|WP_003084265.1\|341244_342627_+\|porin	gnl\|CDD\|335381	pfam03573, OprD, outer membrane porin, OprD family. This family includes outer membrane proteins related to OprD. OprD has been described as a serine type peptidase. However the proposed catalytic residues are not conserved suggesting that many of these proteins are not peptidases.	1.72006e-178
NZ_CP031449.1\|WP_003112941.1\|360728_361781_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|378890	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term. AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, pfam00165, and this dimerization domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].	2.54039e-32

>NZ_CP031449.1|WP_003084303.1|355038_356193_+|polyamine-ABC-transporter-ATP-binding-protein
MAIASGAYKKALEGNQQPKEVLVKIDRVTKQFDETLAVDTVSLTINKGEIFALLGGSGSGKSTLLRMLAGFERPTEGRIFLDGQDITDLPPYERPINMMFQSYALFPHMSVAQNIAFGLKQDGLPKAEIDERVAEMLKLVHMTQYAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRSQMQLELVEIIERVGVTCVMVTHDQEEAMTMAQRIAIMHLGCIEQIGSPMDIYETPASRLVCEFIGNVNLFDGVLVEDVQDHAVIACPQLENPIYIGHGISTRAEDKRITYALRPEKVMISAQKPDNLEHAGHNWAQGTVYDIAYLGGHSVYYIKLASGMIVQAFMANAERHVARPTWDQSVYISWYDDSGVVLQS
>NZ_CP031449.1|WP_003118141.1|353886_354984_+|spermidine-binding-periplasmic-protein-SpuE
MQHSIGKTLLVAALATAIAGPVQAEKKSLHIYNWTDYIAPTTLKDFTKESGIDVSYDVFDSNETLEGKLVSGHSGYDIVVPSNNFLGKQIQAGAFQKLDKSKLPNWKNLDPALLKQLEVSDPGNQYAVPYLWGTNGIGYNVAKVKEVLGDQPIDSWAILFEPENMKKLAKCGVAFMDSGDEMLPAALNYLGLDPNTHDPKDYKKAEEVLTKVRPYVSYFHSSKYISDLANGNICVAFGYSGDVFQAAARAEEAGKGIDIQYVIPKEGANLWFDLMAIPADAKAADNAYAFIDYLLRPEVISKVSDYVGYANAIPGARPLMDKSVSDSEEVYPPQAVLDKLYVSAVLPAKVLRLQTRTWTRIKTGK
>NZ_CP031449.1|WP_003084299.1|352364_353468_+|putrescine-binding-periplasmic-protein-SpuD
MMKRFGKTLLALTLAGSVAGMAQAADNKVLHVYNWSDYIAPDTLEKFTKETGIKVVYDVYDSNEVLEAKLLAGKSGYDVVVPSNSFLAKQIKAGVYQKLDKSKLPNWKNLNKDLMHTLEVSDPGNEHAIPYMWGTIGIGYNPDKVKAAFGDNAPVDSWDLVFKPENIQKLKQCGVSFLDSPTEILPAALHYLGYKPDTDNPKELKAAEELFLKIRPYVTYFHSSKYISDLANGNICVAIGYSGDIYQAKSRAEEAKNKVTVKYNIPKEGAGSFFDMVAIPKDAENTEGALAFVNFLMKPEIMAEITDVVQFPNGNAAATPLVSEAIRNDPGIYPSEEVMKKLYTFPDLPAKTQRAMTRSWTKIKSGK
>NZ_CP031449.1|WP_003084297.1|350878_352249_+|aspartate-aminotransferase-family-protein
MNSQITNAKTREWQALSRDHHLPPFTDYKQLNEKGARIITKAEGVYIWDSEGNKILDAMAGLWCVNVGYGREELVQAATRQMRELPFYNLFFQTAHPPVVELAKAIADVAPEGMNHVFFTGSGSEANDTVLRMVRHYWATKGQPQKKVVIGRWNGYHGSTVAGVSLGGMKALHEQGDFPIPGIVHIAQPYWYGEGGDMSPDEFGVWAAEQLEKKILEVGEENVAAFIAEPIQGAGGVIVPPDTYWPKIREILAKYDILFIADEVICGFGRTGEWFGSQYYGNAPDLMPIAKGLTSGYIPMGGVVVRDEIVEVLNQGGEFYHGFTYSGHPVAAAVALENIRILREEKIIEKVKAETAPYLQKRWQELADHPLVGEARGVGMVAALELVKNKKTRERFTDKGVGMLCREHCFRNGLIMRAVGDTMIISPPLVIDPSQIDELITLARKCLDQTAAAVLA
>NZ_CP031449.1|WP_003084290.1|349454_350813_+|glutamine-synthetase
MTTKLDQLTSWLKERKITEVECLISDLTGIARGKISPTNKFIAEKGMRLPESVLLQTVTGDYVEDDIYYDLLDPADIDMVCRPDENAVFLVPWAIEPTAMVIHDTFDKLGNPIELSPRNILKRVLKMYADKGWRPIVAPEMEFYLTKRSDDPDYPLQAPVGRSGRQETGRQSFSIDAANEFDPLFEDMYDWCEAQGLDLDTLIHEEGTAQMEINFRHGDALDLADQILVFKRTMREAALKHNVAATFMAKPMTGEPGSAMHLHQSIVDVKTGKNIFSNADGTMSELFLHHIGGLQKFIPEVLPLFAPNVNSFRRFLPDTSAPVNVEWGEENRTVGLRVPDSSPENRRVENRLAGADANPYLALAASLLCGYIGMVEGIKPSAQVKGRGYERRNLRLPLTIEAALERMENCKPLEQYLGSKFISGYVAVKRAEHENFKRVISSWEREFLLLSV
>NZ_CP031449.1|WP_003112938.1|348661_349414_+|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein
MSRLPLIGVTACTKQIGLHPYHIAGDKYLRAVVNGAGGLPLIIPALGESIDQAALLDSVDGLLFTGSPSNVEPRHYSGPASEPGTLHDSDRDATTLPLVRAAIDAGIPVLGICRGFQEMNVAFGGSLHQKVHEVGTFMDHREPADQPLEVQYAPRHAMHVQPGGVLAGIGLPSEFQVNSIHGQGVDRLAPGLRVEALAPDGLVEAISVEGAKAFALGVQWHPEWQVLTNPNYLAIFQAFGKACSKRAGQR
>NZ_CP031449.1|WP_003111119.1|343953_344832_-|N-carbamoylputrescine-amidase
MTRNVTVAATQMACSWDRPANIARAEKLVRQAAARGAQIILIQELFETPYFCQKPNPDYLQLATTVEENAAIAHFQALARELQVVLPISFFERAGRARFNSIAVIDADGGNLGVYRKSHIPDGPGYHEKYYFNPGDTGFKVWQTRYARIGVGICWDQWFPESARSMALLGAELLFYPTAIGSEPHDASISSRDHWQRVQQGHAGANLMPLVASNRIGREEQDGYDITFYGSSFIADPFGEKVEELNRTEEGILVHTFDLDALERTRSAWGVFRDRRPNLYGPLKTLDGSLES
>NZ_CP031449.1|WP_003104504.1|342761_343868_-|agmatine-deiminase
MSNPTSTPRADGFRMPAEWEPHEQTWMVWPERPDNWRNGGKPAQAAFAAVAKAIARFEPVTVCASAGQYENARARLDDGNIRVVEISSDDAWVRDTGPTFVIDDKGDVRGVDWGFNAWGGFEGGLYFPWQRDDQVARKILEIERRARYRTDDFVLEGGSIHVDGEGTLITTEECLLNHNRNPHLSQAEIERTLRDYLAVESIIWLPNGLYNDETDGHVDNFCCYARPGEVLLAWTDDQDDPNYLRCQAALRVLEESRDAKGRKLVVHKMPIPGPLYATQEECDGVDIVEGSQPRDPSIRLAGSYVNFLIVNGGIIAPSFDDPKDAEARAILQRVFPEHEVVMVPGREILLGGGNIHCITQQQPAPRKA
>NZ_CP031449.1|WP_003084265.1|341244_342627_+|porin
MKSRKINKSRLALAITAGTLGALAQQAVAAGFIEDSKASLTLRNFYINTDNRNGTASPSKQEEWGQGFILNYQSGFTQGTVGFGVDALGLLGVRLDGGGRAGKSGLDRQPGTVFPLESNGEPVHDFASLGLTAKAKVSNTEFRYGTLQPKLPVVTYNDGRLLPVTFEGGQVTSTDLKDFTLVAGQLEHSKGRNSTDNRSLSIAGANGSSASSRDSNKFYYAGGDYKVNKDLTLQYYYGNLDDFYKQHFLGLIHNWQIGPGVLKTDLRAFDSSSDGKNGSRSGRADGYVSSGYYGSGVTKGEVDNRAFSGLFTYTVSGHSIGAGYQILNGDSDFPFLNRGDGEGSTAYLITDVQIGKFQRAGERTWQVRYGYDFATVGVPGLTFNTIYLSGDKIKTARGDQSEWERDISLAYVIPDGTFKGLGFTWKNASFRSGLPAAGSSNNQRDQDENRLIVSYTLPLL
>NZ_CP031449.1|WP_003104500.1|339660_340632_+|GGDEF-domain-containing-protein
MDDLTGIPEDPQEAALALLHSRAEVARLKEREQLFSALLASVNSVLWAYDWQNRRMVYVSPAYEKIFGRSAALLLADYEEWRNSIYPDDLDYADSSLLQVLERGAVEQREYRIVRGDGEVRWLNDKCFVSRQGEAGLPLMVVGIAEDITDKKHMESELQRLATTDVLTQSSNRRYFFDSAEAAFKECRREGIPLAFLLLDVDDFKKINDRFGHQVGDQVLQRIAQSGSAALRRGDLFGRIGGEEFAVLLPGCDEQTARQIGERLQREVQRLRFQEGEHSFGITVSQGLTVLQADDEGLGALYSRADAAMYSAKRQGKDCIVVG
>NZ_CP031449.1|WP_042853721.1|358230_360618_-|penicillin-amidase
MKRTLTVIAVAVAAAAAGGAWYLHAKQPLRNGSLALAHLQAPVDVRYDERGVPHLYAQNQTDLYRALGYVHAQDRLFQMEMLRRLARGELAEVLGPKLVDTDRLFRTLRIRDHATEYSARQDKQSQPWKVLEAYLDGVNQFQENNPAPLEFDLLGIPRRPFTPEDTLSIAGYMAYSFAAAFRTEPVLTYIRDELGSDYLRIFDLDWHPQGVLTPSGALGAGDWKDLGALARLSQQALEDAGLPQFEGSNAWVVAGSRTASGKPLLAGDPHIRFAAPAVWYEAQLSAPGFELYGHHQALNPFASLGHNRAFGWSLTMFQNDDLDLVAEKVNPDNPNQVWYQGEWVDLQSEEQEIAVKGAAPVKLTLRRSPHGPIVNDALGASSGKTPIAMWWAFLETENPVLDAFYQLNRADTLAKARAAASKIHSPGLNLVWANAAGDIGWWASAALPKRPEGVNPSFILDGSKGEADKSGFYPFADNPQEENPARGYIVSANFQPVPANGRPIPGYYNLADRGQWLDTQLADRGTKWNLDNSRALQLGNRTGYAPRLLAPLLPVLREVVDDAEGKRLVEQLAAWNGDYPVDSTAATLFNQLLFQIAEGALHDELGDAFFDSLIATRAIDSALPRLAADADSPWWDDRRTERRETRADIVRAAWNASLAHLRSTLGNDPSGWLWGKAHTLTHEHALGQQALLKRLLNVGPFAAPGTHEVPNNLSAKIGPAPWAVTYGPSTRRLVDFADPTHSLGINPVGQSGVPFDGHYDDQAEAYIEGHYLPQHYEENEVKANSKGVLVLEPKR
>NZ_CP031449.1|WP_003084310.1|360614_360764_-|hypothetical-protein
MGQGAGRRVVLHGGSSRLTKDFQGPSIRSMPRAGGIRRMLGTTTRRKDR
>NZ_CP031449.1|WP_003112941.1|360728_361781_+|AraC-family-transcriptional-regulator
MQDDPSTSPLTHSATLRRLLYEALDALGLDPTRVYRSVYRRIPLPPPTLGGRLVHDNAPLFWTELAAVTGDADIGLHLGEAMKPRLLDVVGYLLLSARDLEEALRSFVRFQHILSGGFAARLEVEGETARLILDINYLGYASLRQQIECLMLLFLKLLALISDDEFVAERIEFRHRAPPRLGEHRRLFGRLPLFSRPHDALVFSAALLRRPSRNANPDMHDVLTRHAEEQSRELSENRLLNRVRYLIELRLGEGYGLRQCAAELGLGSGALQRALAAGGASFRQVRDEVRRQRASEMLLAGRAIREVAKACGFAELSPFYRAFRRWHAAPPEQYRARLAKREEGYSTSGT
>NZ_CP031449.1|WP_003112942.1|361759_362263_-|transcriptional-regulator
MSLRPTLALLALVSLPLMAAQNDPQPSSKELMKEHQAQIQNDLADVDYKRKRIVEANMNLTDQEGEKFWPIYNTYRTESDKLSKETLKLLLDYAQAYNSGNVSDDQASKLIERVDDLQEDRLELRDKYVKRIAKNVSPKRAMRFLQIEIQLDAIATLEIGRQVPLVE
>NZ_CP031449.1|WP_003118762.1|362367_362979_-|thiol-disulfide-isomerase
MASLAPVFRVNAMTPRRKTLLVSLVGLLWAGGLLAAYWWFEIRYIRPFSEQTTLFSGDSLRLPAELAGPGAIRLVHFWDPACPCNVGNQQHLGELIERFAGKGVEFHVLQKPGSQGRLPDNLAALRPLAGLPGSEQLPASPAVAIWDRDGRLAYFGPYSEGAVCTSSNSFIEPILEALLQGRPVDATHTLAVGCYCPWTPEKG
>NZ_CP031449.1|WP_073652071.1|362977_363997_+|alpha/beta-hydrolase
MCSRAAEYPWVSPVARPRIDCSPEPPMSEAFNPDYLRQHLRPLAAAEADAAVLAYQAYYGLDLRSRHPRLQARLGSMTVDGRRLAVQAWLLPEARGSLLLMHGYYDHMGLYRHVVDWALGMGFSVLACDLPGHGLSEGERASIRDFAEYQAVFKGLLGQAAELDLAAPWHLCGQSTGGAILLDYLLHGGERPELGETILLAPLVRPRAWGWSKLSYRLLSPFVDSIPRRFSENSSDPQFLDFLREHDPLQPRTLPTAWVGALTRWVPRIERAPRRALSPLVVQGESDETVDWRHGLKVLREKFDEPRILLLEEARHHLANESEGLRRRYFDFLSDALGA
>NZ_CP031449.1|WP_003084320.1|364016_364769_-|hypothetical-protein
MRALLAFALLLVGLPALADPYQRLYQAAGWPDQRAHFSDALDAAQKRYQDKLPPALYQTLVDNSNRRFAPAEVDQRALNGLRENLPDSASPLNFFESPLGRKVVAAEVLATRRDQLLQHSNGLPRQTASEPRRALVKRLAQVLPAREAGAEVSLALAGVAADSLSQMLPGLPGLLGGGQTGQLLEGQRQRLVQQIGADLENTLLYVYRDLSDAELTQYVNFAESPAGRSYYQAALAALKAGLAVDQAVAP
>NZ_CP031449.1|WP_003118764.1|364817_365516_+|hypothetical-protein
MGRYCRHAADRLSRHRGGTLQWTMHINVNHPLLHRIVDELVDQGWSHQSIFMPERLTTRLAEECRTRAVAGDLTPAAIGRGDGQVIREGIRGDLTQWLEPGESEACDEYLGVMDSLRQALNASLFLGLEDFECHFALYPPGAYYQKHVDRFRDDDARTVSAVLYLNDAWLPEHGGALRLHLPQRQVDIQPTGGSLVVFMSAGTEHEVLPASRDRLSLTGWFRRRNESLLQLS
>NZ_CP031449.1|WP_003084327.1|365537_366092_-|hypothetical-protein
MLPTRSLLPFFLAPALLASAASQAAMEALDNDSLSQVTGQAGISLRLDLRAGAARVAWVDDGGSLSLRNLVIDNGCVKAGDCPDGRGGNIPLGAAQLGLSLPIFGVEQPTLALDVTTGSGGGQQLAISLPDLATINDQLIASGLPAQRIRLRVASDLYIGDNSIGRIELRDITDLRGTIKVWGH
>NZ_CP031449.1|WP_003112945.1|366357_366852_+|DUF523-domain-containing-protein
MQKVLVSRCLLGHLVRYDGGSHGPFDLLSRWHAQGRIVALCPEVAGGLPTPRPPAEIPGGQGGEVLDRLNRVFTVDGEDVSEAFLLGAEAAVELVRRHDIRMAVLKARSPSCGNLENYDGRFNGNRVAGEGVTAAALKRMGVLVFNEDELDRAAVCLAGLDAGG

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Crispr_ID: NZ_CP031449_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP031449_2

1833113-1833226

Orphan

Consensus_repeat	Method
TATCCGCCATGAAACGTCGGCGCAGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP031449_2

>merge|NZ_CP031449|2|1833113-1833226|CRISPRCasFinder
TATCCGCCATGAAACGTCGGCGCAGCGGCGGATAACGCCGGTGGCGTTATTCGCCCTACGGCCCGACTACGGGGCCGCGGGACGCATATCCGCCATGAAACGCCGGCGCAGCGG

>NZ_CP031449|2|2|1833113-1833226|CRISPRCasFinder
TATCCGCCATGAAACGTCGGCGCAGCGG	CGGATAACGCCGGTGGCGTTATTCGCCCTACGGCCCGACTACGGGGCCGCGGGACGCA
TATCCGCCATGAAACGCCGGCGCAGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP031449.1\|WP_003115119.1\|1838492_1838981_-\|phenazine-biosynthesis-protein-phzB-2	unknown	unknown	gnl\|CDD\|367435
NZ_CP031449.1\|WP_003088150.1\|1842234_1843404_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031449.1\|WP_042853739.1\|1829486_1830698_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340888
NZ_CP031449.1\|WP_019726115.1\|1824534_1825485_+\|FecR-family-protein	unknown	unknown	gnl\|CDD\|226235
NZ_CP031449.1\|WP_003088170.1\|1828148_1829300_+\|PepSY-domain-containing-protein	unknown	unknown	gnl\|CDD\|225723
NZ_CP031449.1\|WP_004343176.1\|1834751_1836635_-\|phenazine-specific-anthranilate-synthase-component-I	unknown	unknown	gnl\|CDD\|223225
NZ_CP031449.1\|WP_003118953.1\|1833231_1833879_-\|pyridoxamine-5'-phosphate-oxidase	unknown	unknown	gnl\|CDD\|223337
NZ_CP031449.1\|WP_042853318.1\|1839986_1840700_-\|LuxR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|377050
NZ_CP031449.1\|WP_003088185.1\|1824031_1824538_+\|ECF-sigma-factor-FemI	unknown	unknown	gnl\|CDD\|171561
NZ_CP031449.1\|WP_096861933.1\|1821932_1823153_+\|DUF2599-domain-containing-protein	unknown	unknown	gnl\|CDD\|378494
NZ_CP031449.1\|WP_096861934.1\|1825693_1828108_+\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP031449.1\|WP_003102692.1\|1841461_1842229_+\|sterol-desaturase-family-protein	unknown	unknown	gnl\|CDD\|225546
NZ_CP031449.1\|WP_003117652.1\|1833901_1834738_-\|trans-2,3-dihydro-3-hydroxyanthranilate-isomerase	unknown	unknown	gnl\|CDD\|334973
NZ_CP031449.1\|WP_003122798.1\|1836631_1837255_-\|phenazine-biosynthesis-protein-PhzD	unknown	unknown	gnl\|CDD\|238495
NZ_CP031449.1\|WP_003093621.1\|1837251_1838469_-\|3-deoxy-7-phosphoheptulonate-synthase	unknown	unknown	gnl\|CDD\|225741
NZ_CP031449.1\|WP_042853740.1\|1830694_1832335_+\|dienelactone-hydrolase	unknown	unknown	gnl\|CDD\|226651
NZ_CP031449.1\|WP_003122005.1\|1823259_1823940_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031449.1\|WP_003088166.1\|1829296_1829485_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031449.1\|WP_003450170.1\|1839016_1839505_-\|phenazine-biosynthesis-protein	unknown	unknown	gnl\|CDD\|367435
NZ_CP031449.1\|WP_042853741.1\|1832376_1832913_+\|HIT-family-protein	unknown	unknown	gnl\|CDD\|223611

Protein	Function_ID	Function_description	E-value
NZ_CP031449.1\|WP_003115119.1\|1838492_1838981_-\|phenazine-biosynthesis-protein-phzB-2	gnl\|CDD\|367435	pfam03284, PHZA_PHZB, Phenazine biosynthesis protein A/B.	4.11013e-107
NZ_CP031449.1\|WP_042853739.1\|1829486_1830698_+\|MFS-transporter	gnl\|CDD\|340888	cd17330, MFS_SLC46_TetA_like, Eukaryotic Solute carrier 46 (SLC46) family, Bacterial Tetracycline resistance proteins, and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of the eukaryotic proteins MFSD9, MFSD10, MFSD14, and SLC46 family proteins, as well as bacterial multidrug resistance (MDR) transporters such as tetracycline resistance protein TetA and multidrug resistance protein MdtG. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. TetA proteins confer resistance to tetracycline while MdtG confers resistance to fosfomycin and deoxycholate. The Solute carrier 46 (SLC46) family is composed of three vertebrate members (SLC46A1, SLC46A2, and SLC46A3), the best-studied of which is SLC46A1, which functions both as an intestinal proton-coupled high-affinity folate transporter involved in the absorption of folates and as an intestinal heme transporter which mediates heme uptake. MFSD10 facilitates the uptake of organic anions such as some non-steroidal anti-inflammatory drugs (NSAIDs) and confers resistance to such NSAIDs. The SLC46/TetA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.60611e-60
NZ_CP031449.1\|WP_019726115.1\|1824534_1825485_+\|FecR-family-protein	gnl\|CDD\|226235	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms].	2.17274e-93
NZ_CP031449.1\|WP_003088170.1\|1828148_1829300_+\|PepSY-domain-containing-protein	gnl\|CDD\|225723	COG3182, PiuB, Uncharacterized iron-regulated membrane protein [Function unknown].	6.42357e-95
NZ_CP031449.1\|WP_003122798.1\|1836631_1837255_-\|phenazine-biosynthesis-protein-PhzD	gnl\|CDD\|238495	cd01013, isochorismatase, Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems. Isochorismatase is part of the phenazine biosynthesis pathway. Phenazines are antimicrobial compounds that provide the competitive advantage for certain bacteria.	9.30038e-130
NZ_CP031449.1\|WP_003118953.1\|1833231_1833879_-\|pyridoxamine-5'-phosphate-oxidase	gnl\|CDD\|223337	COG0259, PdxH, Pyridoxamine-phosphate oxidase [Coenzyme metabolism].	2.00814e-99
NZ_CP031449.1\|WP_003088185.1\|1824031_1824538_+\|ECF-sigma-factor-FemI	gnl\|CDD\|171561	PRK12528, PRK12528, RNA polymerase sigma factor; Provisional.	1.95845e-60
NZ_CP031449.1\|WP_004343176.1\|1834751_1836635_-\|phenazine-specific-anthranilate-synthase-component-I	gnl\|CDD\|223225	COG0147, TrpE, Anthranilate/para-aminobenzoate synthases component I [Amino acid transport and metabolism / Coenzyme metabolism].	1.55708e-82
NZ_CP031449.1\|WP_096861934.1\|1825693_1828108_+\|TonB-dependent-siderophore-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	1.89972e-117
NZ_CP031449.1\|WP_003102692.1\|1841461_1842229_+\|sterol-desaturase-family-protein	gnl\|CDD\|225546	COG3000, ERG3, Sterol desaturase [Lipid metabolism].	1.13085e-45
NZ_CP031449.1\|WP_003117652.1\|1833901_1834738_-\|trans-2,3-dihydro-3-hydroxyanthranilate-isomerase	gnl\|CDD\|334973	pfam02567, PhzC-PhzF, Phenazine biosynthesis-like protein. PhzC/PhzF is involved in dimerization of two 2,3-dihydro-3-oxo-anthranilic acid molecules to create PCA by P. fluorescens. This family also contains uncharacterized Mycobacterial proteins, though there is no significant sequence similarity to pfam00303 members. This family appears to be distantly related to pfam01678, including containing a weak internal duplication. However members of this family do not contain the conserved cysteines that are hypothesized to be active site residues (Bateman A pers obs).	1.94094e-111
NZ_CP031449.1\|WP_003093621.1\|1837251_1838469_-\|3-deoxy-7-phosphoheptulonate-synthase	gnl\|CDD\|225741	COG3200, AroG, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism].	0
NZ_CP031449.1\|WP_042853740.1\|1830694_1832335_+\|dienelactone-hydrolase	gnl\|CDD\|226651	COG4188, COG4188, Predicted dienelactone hydrolase [General function prediction only].	4.86791e-69
NZ_CP031449.1\|WP_042853318.1\|1839986_1840700_-\|LuxR-family-transcriptional-regulator	gnl\|CDD\|377050	pfam03472, Autoind_bind, Autoinducer binding domain. This domain is found a a large family of transcriptional regulators. This domain specifically binds to autoinducer molecules.	4.35866e-42
NZ_CP031449.1\|WP_096861933.1\|1821932_1823153_+\|DUF2599-domain-containing-protein	gnl\|CDD\|378494	pfam10783, DUF2599, Protein of unknown function (DUF2599). This family is conserved in Actinobacteria. The function is not known.	7.93855e-27
NZ_CP031449.1\|WP_003450170.1\|1839016_1839505_-\|phenazine-biosynthesis-protein	gnl\|CDD\|367435	pfam03284, PHZA_PHZB, Phenazine biosynthesis protein A/B.	4.33555e-101
NZ_CP031449.1\|WP_042853741.1\|1832376_1832913_+\|HIT-family-protein	gnl\|CDD\|223611	COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only].	1.00465e-14

>NZ_CP031449.1|WP_042853741.1|1832376_1832913_+|HIT-family-protein
MHIPPELIIHQTRHWTLNQRIDSALPGYCMLGSRQPATAFHQLPEQALAEFGPLLARVEREMDALLRPRRIYVGRYGHMPGLPVHFHLIPLYDWVEELFWEDTRYRTLQQFGVPTAEPLTDGAELTLFVWREFCERADPPAVRGMDRQQAIAGLRRAFGYGVQPRTSPGPDSEPAQDA
>NZ_CP031449.1|WP_042853740.1|1830694_1832335_+|dienelactone-hydrolase
MTAVDLLLVATLLAALLAWWIPALPGRRGLLALASTLALGAGLYAAWDDRWQAAVGAFAGFSLLLGACLRRKPVRGLPFRTGSLYGLLVLLAIAALYLFPVAPLPTPSGPYAVGVRDFELDDPSRPGLLGTPAGQPRRLLVRAWYPARPIAGAAPRHYFDPGEARSTARGFGEILGFPPLLTYLKHLRTNSYPDAPLRDDSARLPVVFYSHGYSAFAGGNWTLMEELASHGYAVYAIQHSGDASPTRLPDGKLLPMDPGLVEHLRRAAHDGLPQAMRQGYVSDDLDQRLDGQLHTALDLPAPANRAVNLSAPVWLADRLFVHDRLQAGEVPDRVADLVAASDFAHTGEMGMSFGGSTTGAVCMVDRRCAAAVNLDGGDFDFAPFDSDLPAPLLMLHADLGNFYRLFGIEPPARPRSFNDFSYERFEHAGQRQDIHRLVLRDSAHAGLTDNPLFIRRPLRDGLLGSAPTEVLIQAPNALVLGFFDHYLRGRANDFPQAQMARFPAWLTRYDNSAVRDWWLAKPEAQRLALRQRIDEMKRRKTGLDLP
>NZ_CP031449.1|WP_042853739.1|1829486_1830698_+|MFS-transporter
MTTPPPSANTLDLRPLMFETFVCTLAVMSFVALVGPLARKLGLAPWQAGAAVTVGGIAWMLAARPWGIASDRHGRRRILLGGLAGFALSYGSLCLFIVLALHWTLPTLLAFAGIVLLRGLAGGFYAAVPACTAALVADHVEAQRRAAALAGLGAASAIGMVIGPGLAGLLATHGLVLPLLVTGALPLVALLALWRWLPREERRQPNRGAALALGDRRLRRPLAVGFVAMFSVTVAQITVGFFALDRLRLDSADAARVAGIALTAVGVALILAQLLVRRLDWPPPRLIRVGGLVAAIGFAAVCFADSPPLLWLAFFVAAAGMGWVFPAVSALNANAVRAEEQGAAAGTLVAVHGLGLISGPLLGALLHQLDSRAPYALVGLLLALAAFWPSQPTRPVETRSEAP
>NZ_CP031449.1|WP_003088166.1|1829296_1829485_+|hypothetical-protein
MRRGLWMIFRWPLLLALLGLFGLLSALLGDGLYDLLSWLALGTPLVLVGWVWLRLPRTRRNP
>NZ_CP031449.1|WP_003088170.1|1828148_1829300_+|PepSY-domain-containing-protein
MTAKTLRTWYLVHKWTSLISTIFLLMLCLTGLPLIFHEEIEHYFEPHPQLEPLTAESPRIDYDDVIARALAARPGEVVRFLVFEKDDPLGLVISAPSLVPPPENGHMQPFDARTGEFFDALPPPGGFMYLMLKLHTDLFLGLPGYLFLGLMGLLLVASLVSGVVVYTPFMRKLDFATVRAERSRRLKWLDLHNLLGIVTLSWVLVVGVTGVINTLALPILMLWQGGQLAEMTAPYKDAPPLQRLGSLDAALATARRAAPDMEVSFVGFPGTQFSSQHHYAVFMRGNTPLTERLLKPALIDAQSGELTDMREMPLYVKTLLLSQPLHFGDYGGMPLKIVWALLDLVSIVILASGLYLWLGRRKTPLEKRLAELPDGSLATEGKA
>NZ_CP031449.1|WP_096861934.1|1825693_1828108_+|TonB-dependent-siderophore-receptor
MPVRTLRPRSLSLAIHAAAMTLALAGAAPALLAAEAPAASSARSYDIAPGPLGRTLSAFASDNGVSLAFDPALTEGRRSAVLRGRYAPVEALHRLLLGSGLELQQRSDGSYTLVPAATDGALELQSSLITAQAAGAETLPAEYAGGQVARGARLGMLGNADAMDAPFSITSYTARTIEQQQARSVADLLQANDPSVRVVGGRGDLVDSYTIRGFSVQNADVAFNGLYGLLPFWRVPIEFAERVEVLKGPNALLGGISPGGSVGGTINLVPKRADDQPLTRVSVDWTQRGQLGTHLDIGRRFGENNAFGVRFNGVYRNGDTAVDHQSREFPMLSLGLDFRGERLRLSSDLLYQKESLEGVVRPLLTGPGTTHIPHAPDSKTRFGLRDSYLDQEDYSMVNRGEYDLADNLTAFASIGGRQSNYETIAANSILIGNQGDIVNSLARQRGDRRTYSAEVGLRGNFDTGPLRHDWTLSANRLHERLGMVYAFTGMQPGNLYQTSPHTPLPDFSSLDGSIPKTNETDLGGVALADRLSFLEDRVQVTLGVRRQQIESRNYDQTSGARTSHDKRHVWTPMASVLVKPLQDLSLYANYIQGLSQGEAAPMTAANAGQVLAPYKAEQYEIGAKYDLGGFTTTLALFEIRKPNAYTDASNVFRADGEQRNRGVELSLYGEPLDGVRVMAGATYIKPEQNKTGDPASEGKDAPGVARRQANLGVSWDTPFVDGLTLDSRWIYTGSAYVDSANALSVPHWNRVDLGAAYAFQVAGKPLVARANLENALGKDYWTAANGYLSISSPRTLSLSLTADF
>NZ_CP031449.1|WP_019726115.1|1824534_1825485_+|FecR-family-protein
MNAADEGRIPSPILDEAAEWLVRLQDSGCTDDTRQACAQWRQRSPQHAHAWERAERLLQCLGRLPPALALPTLGRERGLDRRRAIKHLALVLGGASLGLATWQAEPLRDWLADQRTGVGEQRRLTLPDGSLLTLNTDSAVDLAFDASQRLVRLLRGEIFVDSRADPRPFRVATAEARLHAGAARFNVRQEMAATRVAVLAGRVELSPLHGRGRWLESGESMRLGADGEARRLAFDGLPDAWTRGMLMADRMPLAEVLAELARYRRGVLRCDPQLARLAVSGAYPLLDLRRTLGMLQATYPLKVRGVTDYWISLVPA
>NZ_CP031449.1|WP_003088185.1|1824031_1824538_+|ECF-sigma-factor-FemI
MPPADASLHDAVSHLYQDHHGWLQGWLRRRLGCAENAADLAQDTFARLLASRRVLDAREPRAYLTTVAKGLMINWFQRQSLERAYLDALANLPEDLAPPPEQRLMVLETLHEVDALLGSLPDRVRQAFLLAQIEGLKYEAIAERLGVSLGSVKRYMQQAFRQCLELME
>NZ_CP031449.1|WP_003122005.1|1823259_1823940_+|hypothetical-protein
MAFDAARYVHRYYASLAPTPGNEYPRLRAWEYLWEYVWDPSRSWDDLTAPEQLDTTALHLGFYLANWGMFRGSSGLLQNSNLDLMKALARQLFSGAGPELFELSLVDFAGNGARLAHNRKLLETVLGSMDALSSRVSWTDTLKSKILLGVWGEFPALDRHYVAACRALYPRRGLTSVNGGTLTALHRLIGEERLSFPRLETARKGLLYPTGRLADMAFFQYGLENA
>NZ_CP031449.1|WP_096861933.1|1821932_1823153_+|DUF2599-domain-containing-protein
MNGSRSTFLYLLAAAGLALTPAAQADRGNDVVARLNQLYSDTRQDCGGPSKPAFLCSGVLFRATWPSTDYMFYSISPKSQKSGSASYLRKDAKYRKLAYGLKSGFIFDTIFGNPKDHQDYAVLCSFPIDAATDDRAQQGCTDSRRTPNSVEKSCQDINVSTAEQWAANYRQNRGDHSRQCSFDVRDERNTAAGPAFYQSIRAMAQIADESFTTQNELRLAKWEENPPKSPSILAAFYTEDTGLEGARLNQIQWYQSVQAFLPIINMRLPQTRQQDAQFAYDGRKQAIYPTSEKNACERYVESATWVERDDPGFRKKIMTLEVVPTDCGRKIQDNQTNNFFNELVVDHYLDSEWKDNPDNRDSNIGSMRRQLVCHFNVARNKPEWNLEPSRPYTSNEDSIAKGCNNT
>NZ_CP031449.1|WP_003118953.1|1833231_1833879_-|pyridoxamine-5'-phosphate-oxidase
MMGVNANISESLTGTIEAPFPEFEAPPANPMEVLRNWLERARRYGVREPRALALATVDGQGRPSTRIVVIAELGERGVVFATHADSQKGRELAQNPWASGVLYWRESSQQIILNGRAERLPDERADAQWLSRPYQTHPMSIASRQSETLADIHALRAEARRLAETDGPLPRPPGYCLFELCLESVEFWGNGTERLHERLRYDRDEGGWKHRYLQP
>NZ_CP031449.1|WP_003117652.1|1833901_1834738_-|trans-2,3-dihydro-3-hydroxyanthranilate-isomerase
MHRYVVIDAFASEPLQGNPVAVFFDCDDLSGERMQRMAREMNLSESTFVLRPQQDGDARIRIFTPVNELPFAGHPLLGTAIALGAETDKDRLFLETRMGTVPFALERQDGKVVACSMQQPIPTWEHFSRPAELLAALGLKGSTFPIEVYRNGPRHVFVGLESVAALSALHPDHRALCDFPDLAVNCFAGAGRHWRSRMFSPAYGVVEDAATGSAAGPLAIHLARHRQIPYGQQIEILQGVEIGRPSRMYARAEGAGERVSTVEVSGNGAAFAEGRAYL
>NZ_CP031449.1|WP_004343176.1|1834751_1836635_-|phenazine-specific-anthranilate-synthase-component-I
MNALPTSLLQRLLERPAPFALLYRPESNGPGLLDVIRGEALELHGLADLPLDEPGPGLPRHDLLALIPYRQIAERGFEALDDGTPLLALKVLEQELLPLEQALALLPNQALELSEEAFDLDDEAYAEVVGRVIADEIGRGEGANFVIKRRFQARIDGYATASALSFFRQLLLREKGAYWTFIVHTGERTLVGASPERHISVRDGLAVMNPISGTYRYPPAGPNLAEVMEFLDNRKEADELYMVVDEELKMMARICEDGGRVLGPYLKEMAHLAHTEYFIEGQTNRDVREVLRETLFAPTVTGSPLESACRVIRRYEPQGRGYYSGVAALIGGDGQGGRTLDSAILIRTAEIEGDGRLRIGVGSTIVRHSDPLGEAAESRAKASGLIAALKSQAPQRLGSHPHVVAALASRNAPIADFWLRGASERQQLQADLSGREVLIVDAEDTFTSMIAKQLKSLGLTVTVRGFQEPYSFDGYDLVIMGPGPGNPTEIGQPKIGHLHLAIRSLLSERRPFLAVCLSHQVLSLCLGLDLQRRQEPNQGVQKQIDLFGAAERVGFYNTFAARALQDRIEIPEVGPIEISRDRETGEVHALRGPRFASMQFHPESVLTREGPRIIADLLRHALVERRP
>NZ_CP031449.1|WP_003122798.1|1836631_1837255_-|phenazine-biosynthesis-protein-PhzD
MSGIPEITAYPLPTAQQLPANLARWSLEPRRAVLLVHDMQRYFLRPLPESLRAGLVANAARLRRWCVEQGVQIAYTAQPGSMTEEQRGLLKDFWGPGMRASPADREVVEELSPGPDDWLLTKWRYSAFFHSDLLQRMRAAGRDQLVLCGVYAHVGVLISTVDAYSNDIQPFLVADAIADFSEAHHRMALEYAASRCAMVVTTDEVLE
>NZ_CP031449.1|WP_003093621.1|1837251_1838469_-|3-deoxy-7-phosphoheptulonate-synthase
MDDLLQRVRRCEALQQPEWGDPSRLRDVQAYLRGSPALIRAGDILALRATLARVARGEALVVQCGDCAEDMDDHHAENVARKAAVLELLAGALRLAGRRPVIRVGRIAGQYAKPRSKPHEQVGEQTLPVYRGDMVNGREAHAEQRRADPQRILKGYAAARNIMRHLGWDAASGQEANASPVWTSHEMLLLDYELSMLREDEQRRVYLGSTHWPWIGERTRQVDGAHVALLAEVLNPVACKVGPEIGRDQLLALCERLDPRREPGRLTLIARMGAQKVGERLPPLVEAVRAAGHPVIWLSDPMHGNTIVAPCGNKTRLVRSIAEEVAAFRLAVSGSGGVAAGLHLETTPDDVTECVADSSGLHQVSRHYTSLCDPRLNPWQALSAVMAWSGAEAIPSATFPLETVA
>NZ_CP031449.1|WP_003115119.1|1838492_1838981_-|phenazine-biosynthesis-protein-phzB-2
MLDNAIPQGFEDAVELRRKNRETVVKYMNTKGQDRLRRHELFVEDGCGGLWTTDTGSPIVIRGKDKLAEHAVWSLKCFPDWEWYNIKVFETDDPNHFWVECDGHGKILFPGYPEGYYENHFLHSFELDDGKIKRNREFMNVFQQLRALSIPVPQIKREGIPT
>NZ_CP031449.1|WP_003450170.1|1839016_1839505_-|phenazine-biosynthesis-protein
MREYQRLKGFTDNLELRRRNRATVEHYMRMKGAERLQRHSLFVEDGCAGNWTTESGEPLVFRGHESLRRLAEWLERCFPDWEWHNVRIFETEDPNHFWVECDGRGKALVPGYPEGYCENHYIHSFELENGRIKRNREFMNPMQKLRALGIAVPQIKRDGIPT
>NZ_CP031449.1|WP_042853318.1|1839986_1840700_-|LuxR-family-transcriptional-regulator
MHDEREGYLEILSRITTEEEFFSLVLEICGNYGFEFFSFGARAPFPLTAPKYHFLSNYPGEWKSRYISEDYRSIDPIVRHGLLEYTPLIWNGEDFQENRFFWEEALHHGIRHGWSIPVRGKYGLISMLSLVRSSESIAATEILEKESFLLWITSMLQATFGDLLAPRIVPESNVRLTARETEMLKWTAVGKTYGEIGLILSIDQRTVKFHIVNAMRKLNSSNKAEATMKAYAIGLLN
>NZ_CP031449.1|WP_003102692.1|1841461_1842229_+|sterol-desaturase-family-protein
MIYYLIGVALFIFMLEQLVPGWKLPKVSTWVARVIFLNIVQVSIALLAGITWNKWMMGHSLLHTSDALPPLLAGFAAYFVNTFVTYWWHRARHANDTLWRLFHQLHHAPQRIEVFTSFYKHPTEMVFNSLLGSFVAYVVMGISIEAGAYYIMFAALGEMFYHSNLRTPHVLGYLFQRPEMHRIHHQRDRHECNYSDFPIWDMLFGTYENPRRIDEPQGFAGDKEQQFVDMLLFRDVHSLPGKTQPAPVLVKPDVR
>NZ_CP031449.1|WP_003088150.1|1842234_1843404_+|hypothetical-protein
MIPDIDSRLSRNILKSISYGLPLAEVVPDHTYAQLETRLGELKRRYLELRISHGARELPFSNYLFYLILQSRHQEFDFKLRQGNSVVTNIHRFKSKGRIPSLTTLLLADAVNAKSELELKHPDIPQLDRHARDIERWLAAGNVMPPSERALRGLVEALERAAGEGRPLHLVSAVCPDYSHSSDAEGKPRYTFERVGDQPGLAGAKLVSAGQAVAELARARQVEIRHAILGGEFEYLSFNRNPATGETREGFLGKVERQLERIAGALPCPAATCSFFEMCGGEDGWHRAHGEIVQRLEQGDYGQTGLDYPALESIFLSRLPLYEKWFASQSREQIWASFVSQAAEYALMGKLFGERFDNFVVLAVDHYRMEPFYSFFATVPTLYIRTDYL

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Crispr_ID: NZ_CP031449_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP031449_3

2266161-2266256

Orphan

Consensus_repeat	Method
GGTTTCAGACATCCGCCACCTGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP031449_3

>merge|NZ_CP031449|3|2266161-2266256|CRISPRCasFinder
GGTTTCAGACATCCGCCACCTGCCGGCGCCGGGCACGGTGCTGACGGCGAGCTATACGCACAATTGGTGAGGGGTTTCAGACATCCGCCCCCTGCC

>NZ_CP031449|3|3|2266161-2266256|CRISPRCasFinder
GGTTTCAGACATCCGCCACCTGCC	GGCGCCGGGCACGGTGCTGACGGCGAGCTATACGCACAATTGGTGAGG
GGTTTCAGACATCCGCCCCCTGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP031449.1\|WP_003086963.1\|2257839_2258982_-\|4-phosphoerythronate-dehydrogenase-PdxB	unknown	unknown	gnl\|CDD\|166874
NZ_CP031449.1\|WP_003082886.1\|2256071_2257805_+\|bifunctional-isocitrate-dehydrogenase-kinase/phosphatase	unknown	unknown	gnl\|CDD\|226945
NZ_CP031449.1\|WP_015648459.1\|2263563_2264667_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373079
NZ_CP031449.1\|WP_025297334.1\|2264812_2265127_+\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP031449.1\|WP_003082844.1\|2274440_2275091_+\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380339
NZ_CP031449.1\|WP_003086962.1\|2259196_2259703_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NZ_CP031449.1\|WP_003086914.1\|2275542_2276019_-\|YbaK/EbsC-family-protein	unknown	unknown	gnl\|CDD\|239825
NZ_CP031449.1\|WP_042854163.1\|2262166_2263567_-\|thiamine-biosynthesis-protein-ThiF	unknown	unknown	gnl\|CDD\|366360
NZ_CP031449.1\|WP_023116299.1\|2259811_2261080_+\|beta-ketoacyl-[acyl-carrier-protein]-synthase-II	unknown	unknown	gnl\|CDD\|235781
NZ_CP031449.1\|WP_096861940.1\|2269805_2270648_-\|FecR-family-protein	unknown	unknown	gnl\|CDD\|226235
NZ_CP031449.1\|WP_015648461.1\|2261324_2261798_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031449.1\|WP_003082867.1\|2267286_2269728_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|273805
NZ_CP031449.1\|WP_003082848.1\|2271398_2271722_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031449.1\|WP_023084432.1\|2272132_2273566_+\|proton-coupled-multidrug-efflux-MATE-transporter-PmpM	unknown	unknown	gnl\|CDD\|234981
NZ_CP031449.1\|WP_003086919.1\|2273548_2274442_-\|threonine/homoserine-exporter-RhtA	unknown	unknown	gnl\|CDD\|182525
NZ_CP031449.1\|WP_003109588.1\|2266289_2267126_+\|PhzF-family-phenazine-biosynthesis-protein	unknown	unknown	gnl\|CDD\|223461
NZ_CP031449.1\|WP_003106807.1\|2275128_2275527_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|226383
NZ_CP031449.1\|WP_073667377.1\|2270644_2271361_-\|RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|224511
NZ_CP031449.1\|WP_015648457.1\|2265133_2266021_+\|ImmA/IrrE-family-metallo-endopeptidase	unknown	unknown	gnl\|CDD\|368753
NZ_CP031449.1\|WP_003083342.1\|2253926_2255231_+\|guanine-deaminase	unknown	unknown	gnl\|CDD\|236419

Protein	Function_ID	Function_description	E-value
NZ_CP031449.1\|WP_003086963.1\|2257839_2258982_-\|4-phosphoerythronate-dehydrogenase-PdxB	gnl\|CDD\|166874	PRK00257, PRK00257, 4-phosphoerythronate dehydrogenase PdxB.	0
NZ_CP031449.1\|WP_003082886.1\|2256071_2257805_+\|bifunctional-isocitrate-dehydrogenase-kinase/phosphatase	gnl\|CDD\|226945	COG4579, COG4579, Isocitrate dehydrogenase kinase/phosphatase [Signal transduction mechanisms].	0
NZ_CP031449.1\|WP_015648459.1\|2263563_2264667_-\|hypothetical-protein	gnl\|CDD\|373079	pfam14462, Prok-E2_E, Prokaryotic E2 family E. A member of the E2/UBC superfamily of proteins found in diverse bacteria. Analysis of the active site residues suggest that members of this family are inactive as they lack the characteristic catalytic residues of the E2 enzymes. They are usually fused to or in the neighborhood of a multi/poly ubiquitin domain protein. Other proteins of the ubiquitin modification pathway such as the E1 and JAB proteins are also found in its gene neighborhood along with a distinct predicted metal-binding protein.	5.55271e-36
NZ_CP031449.1\|WP_025297334.1\|2264812_2265127_+\|XRE-family-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.1652e-10
NZ_CP031449.1\|WP_003106807.1\|2275128_2275527_+\|VOC-family-protein	gnl\|CDD\|226383	COG3865, COG3865, Uncharacterized protein conserved in bacteria [Function unknown].	3.85369e-55
NZ_CP031449.1\|WP_003086962.1\|2259196_2259703_-\|transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	1.60556e-35
NZ_CP031449.1\|WP_042854163.1\|2262166_2263567_-\|thiamine-biosynthesis-protein-ThiF	gnl\|CDD\|366360	pfam00899, ThiF, ThiF family. This domain is found in ubiquitin activating E1 family and members of the bacterial ThiF/MoeB/HesA family. It is repeated in Ubiquitin-activating enzyme E1.	2.252e-17
NZ_CP031449.1\|WP_015648457.1\|2265133_2266021_+\|ImmA/IrrE-family-metallo-endopeptidase	gnl\|CDD\|368753	pfam06114, Peptidase_M78, IrrE N-terminal-like domain. This entry includes the catalytic domain of the protein ImmA, which is a metallopeptidase containing an HEXXH zinc-binding motif from peptidase family M78. ImmA is encoded on a conjugative transposon. Conjugating bacteria are able to transfer conjugative transposons that can, for example, confer resistance to antibiotics. The transposon is integrated into the chromosome, but during conjugation excises itself and then moves to the recipient bacterium and re-integrate into its chromosome. Typically a conjugative tranposon encodes only the proteins required for this activity and the proteins that regulate it. During exponential growth, the ICEBs1 transposon of Bacillus subtilis is inactivated by the immunity repressor protein ImmR, which is encoded by the transposon and represses the genes for excision and transfer. Cleavage of ImmR relaxes repression and allows transfer of the transposon. ImmA has been shown to be essential for the cleavage of ImmR. This domain is also found in in metalloprotease IrrE, a central regulator of DNA damage repair in Deinococcaceae, HTH-type transcriptional regulators RamB and PrpC.	1.43977e-16
NZ_CP031449.1\|WP_096861940.1\|2269805_2270648_-\|FecR-family-protein	gnl\|CDD\|226235	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms].	1.44209e-77
NZ_CP031449.1\|WP_073667377.1\|2270644_2271361_-\|RNA-polymerase-sigma-factor	gnl\|CDD\|224511	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription].	2.59184e-32
NZ_CP031449.1\|WP_003082867.1\|2267286_2269728_-\|TonB-dependent-receptor	gnl\|CDD\|273805	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor. This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	1.75788e-85
NZ_CP031449.1\|WP_003082844.1\|2274440_2275091_+\|XRE-family-transcriptional-regulator	gnl\|CDD\|380339	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain. This family contains transcriptional regulators containing an N-terminal XRE (Xenobiotic Response Element) family helix-turn-helix (HTH) DNA-binding domain and a C-terminal cupin domain. Included in this family is Escherichia coli transcription factor SutR (YdcN) that plays a regulatory role in sulfur utilization; it regulates a set of genes involved in the generation of sulfate and its reduction, the synthesis of cysteine, the synthesis of enzymes containing Fe-S as cofactors, and the modification of tRNA with use of sulfur-containing substrates. This family belongs to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	1.06321e-15
NZ_CP031449.1\|WP_023084432.1\|2272132_2273566_+\|proton-coupled-multidrug-efflux-MATE-transporter-PmpM	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
NZ_CP031449.1\|WP_003086919.1\|2273548_2274442_-\|threonine/homoserine-exporter-RhtA	gnl\|CDD\|182525	PRK10532, PRK10532, threonine and homoserine efflux system; Provisional.	2.78867e-125
NZ_CP031449.1\|WP_003109588.1\|2266289_2267126_+\|PhzF-family-phenazine-biosynthesis-protein	gnl\|CDD\|223461	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only].	1.02254e-90
NZ_CP031449.1\|WP_003086914.1\|2275542_2276019_-\|YbaK/EbsC-family-protein	gnl\|CDD\|239825	cd04333, ProX_deacylase, This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS). While ProX and ProRS-INS hydrolyze misacylated Ala-tRNA(Pro), the E. coli YbaK hydrolyzes misacylated Cys-tRNA(Pro). A few CD members are N-terminal, YbaK-ProX-like domains of an uncharacterized protein with a C-terminal, predicted Fe-S protein domain.	6.37872e-72
NZ_CP031449.1\|WP_023116299.1\|2259811_2261080_+\|beta-ketoacyl-[acyl-carrier-protein]-synthase-II	gnl\|CDD\|235781	PRK06333, PRK06333, beta-ketoacyl-ACP synthase.	0
NZ_CP031449.1\|WP_003083342.1\|2253926_2255231_+\|guanine-deaminase	gnl\|CDD\|236419	PRK09228, PRK09228, guanine deaminase; Provisional.	0

>NZ_CP031449.1|WP_015648457.1|2265133_2266021_+|ImmA/IrrE-family-metallo-endopeptidase
MTLTPKSEAIRISRVLQHVLGPDRFPVNVRELALEWSSQTCPDQPILGIKPVPLPSFEGMLAKSPKGDGWMIGVNEDVESEGRIRFTIAHEFGHYILHRERQSHFNCSNQDMHTWDPHGREIELEADTFASYLLMPLDDFKAQIDGQPFSLDLLRHCADRYGVSVTAAALKWREVAPGRVIVLSAKDGFLDWSCSNERAFRSGAYFATRKAPIELPAESILNHAARSVGGQSGVVPASVWLPRENTELEIEEHAFVIEGHDYNYTLGVLILPEVERYLVGEDELLSPLTGVPSFR
>NZ_CP031449.1|WP_025297334.1|2264812_2265127_+|XRE-family-transcriptional-regulator
MTSPLGQRISTRRRELGMSLEQLAVLTDSSKSYLWELENRDKPNPSLDKVTKIATALNLTPEALLGTASPDLAAEADKAFFRKYQELDDKDKERLRKMVDDWWS
>NZ_CP031449.1|WP_015648459.1|2263563_2264667_-|hypothetical-protein
MTTDLPLTPSHQPNAGHSAVVKINGEMVDVRDWAPTARQILAAAGLQPVTEYVLLSWPEHGPTEELGLDETISLPRNGSVAEFLAMQADAVFYFMLNDLRFAWAGLLTTEDVRKVGRVPNTMEVWLEYRDEPDMELEEGAVVNLLAPGVERMYSRRRKWKLDVHGVLVESLEPEIVVRDALLLAGIDPDQGWIIRLKVRGEPKREVGLADSIDLTKPGIERLQLISDTINNGEIPCSVRRDFALLAKDETYLDARGLFWETVDDGRRWLLIRDYPVPKGYLQTSTCLAIEIPQNYPVAEIDMFYCNPPLVLASGVQIPQTEYRQVVNGIEFQRWSRHRNQGQWSPTRDSVLSHIGLVEESIARELGQ
>NZ_CP031449.1|WP_042854163.1|2262166_2263567_-|thiamine-biosynthesis-protein-ThiF
MSAGTTMVLTGALHARLQQHLLPPDGLEAVAILLCKRMRTENRLKLLCKDAVLVPYGECTRVRDYLEWPGRRLLEAVVLAEPDELSLVLIHSHPGGLYDFSQSDSESDAQVIPQVFANLESADQSDVVHGSAIMVPGGAIRARVYDYKHQMAPINLVAVYGDDIRLFWNDDNQPLHHAIAFSDEMRSELGRLTVAVIGYSGTGSIAAEQLARIGFGGMVVVDYDQVENRNLNRIINSTVADAAESQLKVNVFRRAAAAFRPGISLKCVPTSIATREAVLAVAEADILFCCVDSEEGRFICDAISAAFMMPLFDVGVVIPVRRDRDDRLAILDIHGRVDYVQPGGSTLFDRKVYTSASLRAEELAKRDPEAYAEQVKVGYMPGSLEQSPSVITVNMHAASMVVQELIARLYPYRLDGNSSCARTMFSLAEKEYEYLSEADFTPQESPKLGTGLNEPLLGLPLLRAKQ
>NZ_CP031449.1|WP_015648461.1|2261324_2261798_-|hypothetical-protein
MDGHNFERLKAHILMHSVSDDFEVARREWSLVAIEVTEEFDQCPCGQDIKEHCYIRNSLNGNQTYVGNVCINRFLQINTGNLFEGLKRIASDLKANANHDLIEHAWKMGYLYGEKEYSFLLQTMRSRKLSPSQLAWKEKINRRIVQQTVVKSRTHRT
>NZ_CP031449.1|WP_023116299.1|2259811_2261080_+|beta-ketoacyl-[acyl-carrier-protein]-synthase-II
MSKRIVVTGMGAVSPLGCGVEPIWQRLLAGQSGIATLPAELIGDLPISIGGQVPDRVQDPQAGFDPDLLLAAKEQRKMDRFILFALAAAQEALAQAGWAPQSAEAQERTATVIASGVGGFHAIAEAVRTTDGKGPRRLSPFTIPSFLCNMAAAHVSIRHGFKGPLGAPVTACAAGVQAIGDAARMIRAGEVDVALCGGAEATIHRVSLAGFAAARALSSDFNDSPERASRPFDQARDGFVMGEGAGLLVIEELEHALARGARPIAELVGYGTSSDAYHMTAGPEDGSGARRAMQQALRQAGVEAAAVQHLNAHATSTQVGDKGELAAIKAVFGAGSGLAISATKSATGHLLGAAGGIEAIFTVLALRDQLAPATLNLETPDTDAEGLDLVRGEARRWPMEHALSNGFGFGGVNASLLFRHWV
>NZ_CP031449.1|WP_003086962.1|2259196_2259703_-|transcriptional-regulator
MQRKTFADAECPIARSLERVGEWWSILIMRDALQGLRRFDEFSRSLDIAPNMLTRRLNALVEAGLLERQPYSQRPLRYQYVPTAKGEDFRVVLMAFVAWGNRHYAEEGQSVQLVERTSGRPVRSFMAALADGRTVPLEQCTVQAGPAASEEMRQRLAAMPERSELPAR
>NZ_CP031449.1|WP_003086963.1|2257839_2258982_-|4-phosphoerythronate-dehydrogenase-PdxB
MRILADENIPVVDAFFADQGSIRRLPGRAIDRAALAEVDVLLVRSVTEVSRAALAGSPVRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAEVRGADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAREPDGEFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGEPQADPELAARCLIATPHIAGYSLEGKLRGTAQIYQAYCAWRGIAERVSLQDVLPETWLAGLQLNPGCDPAWALATLCRAVYDPRSDDAAFRRSLTGDSANRRAAFDALRKHYPPRREITGLRVATGGQAGLQRVVRALGAQLV
>NZ_CP031449.1|WP_003082886.1|2256071_2257805_+|bifunctional-isocitrate-dehydrogenase-kinase/phosphatase
MVQSAPASEIAALILRGFDDYREQFREITDGARARFEQAQWQEAQRASAQRINLYEEKVAETVAGLRAGLADSELLDVERWPIIKSAYIAQIDLRLDDELAETWFNSIFCGLFSHDNISDGTMFVHTTRPSLRAHARAPYTRTYRPGGDLRQALEKIFDDYRFDVPYDDRERDLERIDALLHSNLPDWVCKDPDLAIELIGSVFYRNKGAYLVGRLFTPDEQWPLVFPLLHREGHGIQFDTVITDEAEVSIIFSFTRSYFMVDVPVPAELVAFLKRLLPGKHLAELYTSIGFYKQGKSEFYRALINHLATTDDRFVMAPGVRGMVMSVFTLPGFNTVFKIIKDRFNPSKSVDHATVIQKYQLVKNHDRVGRLADTQQFADFRFPVSKFEPECLAELLEVAPSTVVMEGDVVLIRHCWTERRMTPLNIYLENASEAQTREALNDYGLAIKQLAAANIFPGDMLLKNFGVTRHGRVVFYDYDEICYLTEVNFRYIPEPRFPEDEMSSEPWYSVGPNDVFPEEFPRFLFVDLNQRRLFAKLHGNLYDAKYWQGLQEQIREGKVIDVFPYRRQETPEQLLG
>NZ_CP031449.1|WP_003083342.1|2253926_2255231_+|guanine-deaminase
MTRNAKAYRAAILHSIADPAEVGVERSYEYFEDGLLLVEDGKVARLGDAETLLGEIGEVEVFEYRDALITPGFIDTHIHFPQTGMIASYGEQLLDWLNTYTFPTERQFGDQAHADQVAEIFLQELLRNGTTTALVFGSVHRQSVESLFEAARRLDLRLIAGKVMMDRNAPDYLTDTAESSYRDSKALIERWHGQGRLLYAVTPRFAPTSTAEQLDMAARLLREHPGVYLHTHLSENLKEIEWVKELFPERSGYLDVYDHHGLLGPRSVFAHGVHLCDGECQRLAETGSAVAFCPTSNLFLGSGLFDLPKLERYKVKVGLGTDVGAGTSFSQLQSLNEAYKVMQLQGARLDPFKSLYLATLGGARALELDDRIGSFATGNEADFVVLDYHATPLLSYRLSQAGSLAERLFALTILGDDRTVKETFAAGRSVHRRD
>NZ_CP031449.1|WP_003109588.1|2266289_2267126_+|PhzF-family-phenazine-biosynthesis-protein
MPVSLPFEQVDVFSEQPFKGNAVAVVIGADRLSSQQMLEFAAWTQLSETTFLLRPTVAEADYRVRIFTPLRELPFAGHPTLGSCQVWLNQGGGNAADEIVQECLAGLIRIRRKGALLSFAAPPLLRGGAVEDEVLRRIESGLGLSPGQVLGSQWVDNGPGWVAVRLATRDEVLAIRPDYAKLDGLNVGVVAPWQGPQAEADVEVRAFMGEELNEDPVTGSLNASLAQWLIGTGVMPGRYTASQGTALGRRGRISVEQIGGDIWIGGEVQPGMSGQVVF
>NZ_CP031449.1|WP_003082867.1|2267286_2269728_-|TonB-dependent-receptor
MHFSLRSRHLRPSLLASSLLLAVSAQGQEKLDVDLPAAPLGQAINALAQQSSVQILFAGDLGAGRQAPALKGRFTPEEALRQLLRDSGLKAQARDEHTFIVVPASEAAVPATQARSEPLDMEQMEITASRTSSDLVSATRQSTVIEHAQLEELRQGSDSLATVLAKAVPGMSDSSRTITEYGQTLRGRSMLVMVDGVPLNTNRDSSRNLANIDPALIERIEVIRGSSAIYGSGATGGIISITTRPAGGENRAETRLSATSPLTRLGSDGLGGQFQQYFAGSLGALDYSFDFGTRHVGASYDAHGDRIAPEPSQGDLFDSNVYNIGGKLGLRIDENQRVQLALSHYDARQDTDYATDPRVARLPPGSVPANAIKGLELDEQNRIRNTLANLEYENLDILGSRLSAQLYYRDYFTRFTPFDARAVSTRGGNVDQIMQNSEVFGSRLTLRTPLGESGNTELVWGGDYNQERSDMPLDVFDPAAYDASGGLVFDKIGKLTYMPPLRTRSAGAFAQLQHRFDEHWSIDGGLRYEYSTAEFDDFVPLSESKAASPVTVKGGDLDYDAVLSNLGIVYSPVAGQEIYASFSQGFQLPDVGIQLRNARRGFDIGSSNLEPVKTNNYELGWRGAIGGNTLGSLALFYTTSKLGDVQSFNNGLILTRTKERIYGVEASADWLSDDEVWGAGGSATWMRGREKPDGKDWQDMTGYRVPPLKLTAYLQYKPDADWNNRLQATFFDSKDYRLDGVESFGRRQVSTYTTVDLVSQYRITPDDQLSLGIQNLFNRDYYPLYSQLLRNNNNTSHLPAPGTVLTASYTHNW
>NZ_CP031449.1|WP_096861940.1|2269805_2270648_-|FecR-family-protein
MTQPSKRNGQVPLDDALERHRDALKDLFPLPPSRPKSRKASKAAGVALLLALAIGALAWLDPAYKRERFATAIGERRDVTLADGSQLLLDSGSQIEVSWHPLSRRVALRAGQVLFEVSPARYRPFVVSAGSTDIRVLGTRFNVRRLDDDVRVTLERGRVEVGTSATAQAPVVLLPGQQVDAIGGQLMPLAKVDAATGMAWKDDRLVFERTPLGEAVALLRHYRKAPILLDDPSLASLRLTGVFAAHNADRLLDLLPSILPVAVSRQEDGSVEIQRKSTRK
>NZ_CP031449.1|WP_073667377.1|2270644_2271361_-|RNA-polymerase-sigma-factor
MSSGAKRGSLSALARQLRGRAKATCPLRTPTQAIPDDDRSFICDCFSFTLDPHSSEPGSFPGCIVPFDPAKPTLLSTLVRHYEELVDHVRRRFGDRGMAREVVHDVCVQLLERDEKEDVHTPLALLRKISHDAAVSRYRSDRRRTAWVEAVAELPEVACMAATPMGRHEAEREFQALVDAIATLPPRCQAVFVMHKIHEVPQAQVADRLGISVKTVEKHLRLGLAACRERLGRGEARP
>NZ_CP031449.1|WP_003082848.1|2271398_2271722_-|hypothetical-protein
MAKADDTSNPAITAQSPSTFIPLRRTSQCNQHPGCATLYLDSSAASEDLFDTARRRLESAIGTLSVLDLLDETEEPGESICRITGSLLSLLSDALSLFEAEYARRHR
>NZ_CP031449.1|WP_023084432.1|2272132_2273566_+|proton-coupled-multidrug-efflux-MATE-transporter-PmpM
MNSPALPLSRGLRIRAELKELLTLAAPIMIAQLATTAMGFVDAVMAGRASPHDLAAVALGNSIWIPMFLLMTGTLLATTAKVAQRYGAGDQPGTGPLVRQALWLALLIGPLSGAVLWWLSEPILGLMKVRPELIGPSLLYLKGIALGFPAAALYHVLRCYTNGLGRTRPSMVLGIGGLLLNIPINYALIYGHFGMPKMGGPGCGWATGSVMWFMFLGMLFWVNKASIYRASQLFSRWEWPDRATIGPLVAVGLPIGIAVFAESSIFSVIALLIGGLDENVVAGHQIALNFSALVFMIPYSLGMAVTVRVGHNLGAGLPRDARFAAGVGMAAALGYACVSASLMLLLREQIAAMYSPDPAVIAIAASLIVFSALFQFSDALQVTAAGALRGYQDTRVTMIMTLFAYWGIGLPVGYSLGLTDWFQEPTGPRGLWQGLVVGLTGAAIMLCIRLARSARRFIRQHERLQREDAEAASVLGR
>NZ_CP031449.1|WP_003086919.1|2273548_2274442_-|threonine/homoserine-exporter-RhtA
MTSTSRGLAGTLLPVGLLLIAMASIQSGASLAKSMFPLVGAQGTTALRLFFAALILLLLLRPWRKRLSLQSLRSVVVYGIALGGMNLLFYLSVRTVPLGIAVALEFTGPLLVAILSSRRLLDFLWIGLAVFGIWLLLPLGNSAEPLDLVGAAYALGAGVCWALYILFGQRAGADHGAQGAALGVLVAAILVVPIGVAHAGADLLDPALIPLALGVAVLSTALPYTLEMVALTRLPARTFGTLMSIEPAFGALSGLLFLGERLSPTQWLAIGAIILASVGTTLSVKSRGAAPALPAKD
>NZ_CP031449.1|WP_003082844.1|2274440_2275091_+|XRE-family-transcriptional-regulator
MEEVRQWEAARWTAGNGMCTIMRKTATVSNILPNPTERPSVLEHVSGNVRRLRLQAGLSQEALARAASVSRRMLVGIESGDVNVSLSTLDRIAAALGVLFPDLVQAPATDRSRINAVAWVGHHPESRATLLASAPARREVELWAWSLGPGERYVSEPDAAGWREMVLVIEGRLRLELADGERRIEAGDFHAFASDQPYAYVNDGDEVVRFTRNVVS
>NZ_CP031449.1|WP_003106807.1|2275128_2275527_+|VOC-family-protein
MSARVRPFLMFQGVQAEAAMNFYLSLFDDAEILQIQRYGAEGPGPEGSVLKALFRLGDQSVHCIDSHVRHAFDFTPAFSFFVDCESNAQIERLAEALSDGGKALMPLGDYGFSQRFAWLADRFGVSWQLNLA
>NZ_CP031449.1|WP_003086914.1|2275542_2276019_-|YbaK/EbsC-family-protein
MSLESVRRFFAEKAPDLRIIELETSTATVALAAEAHGVEPGRIAKTLSLRVGERTVLVVARGDARLDNRKIKAAFGGKAKMLGAEDVVELTGHPVGGVCPFGLATPLAVYCDVSLQAFDEVLPAAGAVHSAVRIAPQRMAELVDAQWVDVCQEVLQEA

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Crispr_ID: NZ_CP031449_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP031449_4

6120778-6120872

Orphan

Consensus_repeat	Method
GCCGACAACGGCAGCGAGCAGACCGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP031449_4

>merge|NZ_CP031449|4|6120778-6120872|CRISPRCasFinder
GCCGACAACGGCAGCGAGCAGACCGTCGACCGCCTGCACAAGGACATGACCAAGGCCGAAGCCCGCCTGGCCGACAACGGCAGCGAACAGACCGT

>NZ_CP031449|4|4|6120778-6120872|CRISPRCasFinder
GCCGACAACGGCAGCGAGCAGACCGT	CGACCGCCTGCACAAGGACATGACCAAGGCCGAAGCCCGCCTG
GCCGACAACGGCAGCGAACAGACCGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP031449.1\|WP_003099398.1\|6113089_6114355_+\|Hsp70-family-protein	unknown	unknown	gnl\|CDD\|212673
NZ_CP031449.1\|WP_096861801.1\|6123895_6125287_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|273593
NZ_CP031449.1\|WP_003095488.1\|6115718_6116063_+\|osmotically-inducible-lipoprotein-OsmE	unknown	unknown	gnl\|CDD\|183058
NZ_CP031449.1\|WP_003121132.1\|6126813_6127926_-\|fatty-acid-desaturase	unknown	unknown	gnl\|CDD\|225779
NZ_CP031449.1\|WP_003107570.1\|6129181_6129811_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|236881
NZ_CP031449.1\|WP_003095496.1\|6116660_6117473_+\|c-di-GMP-binding-multidrug-transporter-transcriptional-regulator-BrlR	unknown	unknown	gnl\|CDD\|226231
NZ_CP031449.1\|WP_003161310.1\|6121798_6122413_-\|cytochrome-b/b6-domain-containing-protein	unknown	unknown	gnl\|CDD\|226602
NZ_CP031449.1\|WP_003123551.1\|6127922_6129023_-\|ferredoxin-reductase	unknown	unknown	gnl\|CDD\|99812
NZ_CP031449.1\|WP_096861805.1\|6111363_6111927_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031449.1\|WP_003095492.1\|6116106_6116514_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377850
NZ_CP031449.1\|WP_016852186.1\|6121034_6121802_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239026
NZ_CP031449.1\|WP_003095526.1\|6130040_6130544_+\|urease-accessory-protein-UreE	unknown	unknown	gnl\|CDD\|237322
NZ_CP031449.1\|WP_003095503.1\|6119839_6120373_+\|bacterioferritin	unknown	unknown	gnl\|CDD\|225104
NZ_CP031449.1\|WP_019372213.1\|6117474_6119544_-\|AsmA-family-protein	unknown	unknown	gnl\|CDD\|225529
NZ_CP031449.1\|WP_003116116.1\|6122466_6123090_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031449.1\|WP_003095483.1\|6115090_6115630_+\|MOSC-domain-containing-protein	unknown	unknown	gnl\|CDD\|225167
NZ_CP031449.1\|WP_003095519.1\|6125277_6126594_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341030
NZ_CP031449.1\|WP_003095515.1\|6123227_6123917_+\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|130454
NZ_CP031449.1\|WP_019681409.1\|6112018_6112882_-\|oxaloacetate-decarboxylase	unknown	unknown	gnl\|CDD\|225311
NZ_CP031449.1\|WP_023088627.1\|6114519_6114936_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|183165

Protein	Function_ID	Function_description	E-value
NZ_CP031449.1\|WP_003099398.1\|6113089_6114355_+\|Hsp70-family-protein	gnl\|CDD\|212673	cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins. This bacterial subfamily includes the uncharacterized Escherichia coli YegD. It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. YegD lacks the SBD. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but instead, function as NEFs for their Hsp70 partners, other family members function as both chaperones and NEFs.	0
NZ_CP031449.1\|WP_096861801.1\|6123895_6125287_+\|HAMP-domain-containing-protein	gnl\|CDD\|273593	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (pfam00512) and a domain found in bacterial signal proteins (pfam00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.	0
NZ_CP031449.1\|WP_003095488.1\|6115718_6116063_+\|osmotically-inducible-lipoprotein-OsmE	gnl\|CDD\|183058	PRK11251, PRK11251, osmotically-inducible lipoprotein OsmE.	1.90142e-51
NZ_CP031449.1\|WP_003121132.1\|6126813_6127926_-\|fatty-acid-desaturase	gnl\|CDD\|225779	COG3239, DesA, Fatty acid desaturase [Lipid metabolism].	7.76501e-66
NZ_CP031449.1\|WP_003107570.1\|6129181_6129811_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|236881	PRK11202, PRK11202, HTH-type transcriptional repressor FabR.	4.59942e-41
NZ_CP031449.1\|WP_003095496.1\|6116660_6117473_+\|c-di-GMP-binding-multidrug-transporter-transcriptional-regulator-BrlR	gnl\|CDD\|226231	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown].	1.65802e-48
NZ_CP031449.1\|WP_003161310.1\|6121798_6122413_-\|cytochrome-b/b6-domain-containing-protein	gnl\|CDD\|226602	COG4117, COG4117, Thiosulfate reductase cytochrome B subunit (membrane anchoring protein) [Energy production and conversion].	1.20616e-69
NZ_CP031449.1\|WP_003123551.1\|6127922_6129023_-\|ferredoxin-reductase	gnl\|CDD\|99812	cd06216, FNR_iron_sulfur_binding_2, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.	3.98791e-87
NZ_CP031449.1\|WP_003095492.1\|6116106_6116514_-\|hypothetical-protein	gnl\|CDD\|377850	pfam07498, Rho_N, Rho termination factor, N-terminal domain. The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It it thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers. This domain is found to the N-terminus of the RNA binding domain (pfam07497).	0.000208897
NZ_CP031449.1\|WP_016852186.1\|6121034_6121802_-\|hypothetical-protein	gnl\|CDD\|239026	cd02108, bact_SO_family_Moco, bacterial subgroup of the sulfite oxidase (SO) family of molybdopterin binding domains. This domain is found in a variety of oxidoreductases. Common features of all known members of this family, like sulfite oxidase and nitrite reductase, are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. The specific function of this subgroup is unknown.	4.55161e-96
NZ_CP031449.1\|WP_003095526.1\|6130040_6130544_+\|urease-accessory-protein-UreE	gnl\|CDD\|237322	PRK13261, ureE, urease accessory protein UreE; Provisional.	2.44267e-58
NZ_CP031449.1\|WP_003095503.1\|6119839_6120373_+\|bacterioferritin	gnl\|CDD\|225104	COG2193, Bfr, Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism].	1.01703e-50
NZ_CP031449.1\|WP_019372213.1\|6117474_6119544_-\|AsmA-family-protein	gnl\|CDD\|225529	COG2982, AsmA, Uncharacterized protein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane].	0
NZ_CP031449.1\|WP_003095483.1\|6115090_6115630_+\|MOSC-domain-containing-protein	gnl\|CDD\|225167	COG2258, COG2258, Uncharacterized protein conserved in bacteria [Function unknown].	5.52525e-29
NZ_CP031449.1\|WP_003095519.1\|6125277_6126594_-\|MFS-transporter	gnl\|CDD\|341030	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MFS-type transporter YcaD, Bacillus subtilis MFS-type transporter YfkF, and similar proteins. They are uncharacterized transporters belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.70918e-108
NZ_CP031449.1\|WP_003095515.1\|6123227_6123917_+\|DNA-binding-response-regulator	gnl\|CDD\|130454	TIGR01387, Transcriptional_regulatory_protein_PcoR, heavy metal response regulator. Members of this family contain a response regulator receiver domain (pfam00072) and an associated transcriptional regulatory region (pfam00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system. [Regulatory functions, DNA interactions].	2.43467e-112
NZ_CP031449.1\|WP_019681409.1\|6112018_6112882_-\|oxaloacetate-decarboxylase	gnl\|CDD\|225311	COG2513, PrpB, PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism].	3.74421e-87
NZ_CP031449.1\|WP_023088627.1\|6114519_6114936_-\|hypothetical-protein	gnl\|CDD\|183165	PRK11505, PRK11505, phosphate starvation-inducible protein PsiF.	1.5931e-18

>NZ_CP031449.1|WP_003095503.1|6119839_6120373_+|bacterioferritin
MTTVQLTDVQTLRDRARKNIQEGAVTEGYSADRQTVLRLLNEALATELVCFLRYKRHYFMATGLKASIAAAEFLEHANQEMQHADQLAERIMQLGGEPDFNPRGLEERSHAEYVEGKTLKDMVTENLIAERIAIDSYREIITYLGNDDPTTRRIFEEILAQEEEHADDMADILDDLA
>NZ_CP031449.1|WP_019372213.1|6117474_6119544_-|AsmA-family-protein
MTRGRKILTWSLASLVLLLAALVVFIATFDWNLIKPTLNEKVSAALNRPFAINGNLAVAWRREEGEEGWRAWIPWPRFSAEDITLGNPEWTAGKTKASEFASLERIEFRLAPLPLLWQTIRIPQIKLTQPRADLLRLADGRANWDFDLPASDSDEPSAWQLDIREIGFDKGSVSLDDQRLKTRLEVLVDPLGKPVPFGQLAGKALATGDAADAQDYVFGWKVKGTYKGQALAGSGKVGGMLALQDASKPFPLQAEVSAGSTRAAVVGTLTDPLNLGALDLRLKLSGTSMANLYPLTGITLPDTPAYSTDGHLLARLKEEGGALFRYENFNGKVGASDLHGSLTFVARQPRPKLSGKLTSEQLRFADLGPLIGADSNAEKQKRGQTSRQPGDKVLPVEEFRTERWRDMDADVEFTGKRIVHSDQLPISDLYTHLVLNDGLLRLEPLRFGVAGGKLESDIRLDGGKQPMQSRVKMSARGFKLKQLFPGFAPMQTSFGELNGDASLSGSGNSVAKILGGADGELKMLINDGAISKGLTEIAGLNVGNYLVTKLFGDDEVKINCAAADFGLQKGLMTSRLFVFDTENALVNVDGTVNFANEKLDLDVTPHSKGLRIFSLRSPLYVRGTFAKPDAGVHAGPLVARGAGMIALGVTVGPAASLLALVAPSKSDDNQCTALLQRMRLPAKVPAGKR
>NZ_CP031449.1|WP_003095496.1|6116660_6117473_+|c-di-GMP-binding-multidrug-transporter-transcriptional-regulator-BrlR
MLTIGQLARIFEISTKTLRHYDAIGLFVPARTGSDNGYRYYQPEQIEQLSRILALRRLDVPLEAIDRLKRDGALDDPQRLRHFLQRHQHTLREEISARQRLLAELDRTLATLAHWRIRNMHARIVERPAFSVVGMEYFGSAPGDTIGQLWERFIPREHEIAGKHDPEVSYGICAQQPNGEFHYVAGFEVQEGWPVPEGMVRFQVPAQKYAVFTHKGTAPQIAESFQAIYSHLLAERGLEPKAGVDFEYYDQRFRGPLDPNSQVDLYIPIY
>NZ_CP031449.1|WP_003095492.1|6116106_6116514_-|hypothetical-protein
MPRGDKSKYSDKQQRKAEHIEESYKAKGVSESEAEARAWATVNKQSGGGERKGGSGRAKSETAKRADRKDSAHRAAQARSGRPANRGSASRGKRQGSTSVSEMTREELMQLARKRDIRGRSTMRKAELIEALSRA
>NZ_CP031449.1|WP_003095488.1|6115718_6116063_+|osmotically-inducible-lipoprotein-OsmE
MYKQSLAALFVMATLAGCASTKVQNPVNYITFRNEPLVKDVEKGMSQQEVLRIGGTPSGTQKRLMKPGSCNSYILNKDGQQQPFYVSFDGSGKVDGSGFLSCSELDRHERDARP
>NZ_CP031449.1|WP_003095483.1|6115090_6115630_+|MOSC-domain-containing-protein
MQQVIAVSLCATHAFSKQVRPAIRLLKGLGVEGDAHHGVTVKHRSRVRQDPTQPNLRQVHLIHEELHDELRASGFAIGPGTMGENITTRGVDLLGLPTGTRLRLGESALVELTGLRNPCSQLDNYQPGLTAAVLGRDEQGNLIRKAGVMAIVLEDGEVRPGDAIDIQLPPLPHRALEKV
>NZ_CP031449.1|WP_023088627.1|6114519_6114936_-|hypothetical-protein
MNILRIPMFVLAMAVSAHGFAATAQQEKMTACNAEATTKALKGDERKAFMSGCLKAGAPAGGKATAQQEKMKSCNADATAKALKGDERKAFMSSCLKAGGSAKAATQQEKMKTCNADATAKALKGDERKAFMSTCLKK
>NZ_CP031449.1|WP_003099398.1|6113089_6114355_+|Hsp70-family-protein
MNPSTAARALGIDFGTSNSTVGWWRPEVEPLIELEDGKITLPSVVFFNVEERRPVYGRQALGEYLEGYEGRLMRSLKSLLGSKLLKSETTVLGSALPFKDLLGLFIGQLKARGEAAAGQAFDAVVLGRPVFFVDDDPEADREAQDTLVQVANKLGFKEVSFQYEPIAAAFDYERCIQREELVLIVDIGGGTSDFSLVRLAPERRNLAERQDDILATGGVHIGGTDFDKQLSLEGVMPLFGYGSRMKSDAFMPTSYHLNLATWHTINAVYAQKSQLALKNMRYDIVDSTGIDRLFRLIEERAGHWLAMQVEDSKIRLTETERLHLSLERIEAGLGVELTRGLFENAVDGLLERVRNSVAQLLASAGVDPDRVDTVFFTGGSSGIPALRRSVSAMLPNARHVEGNLFGSIGSGLAIEAKKRYG
>NZ_CP031449.1|WP_019681409.1|6112018_6112882_-|oxaloacetate-decarboxylase
MHRASHHELRAMFRALLDSSRCYHTASVFDPMSARIAADLGFECGILGGSVASLQVLAAPDFALITLSEFVEQAARIGRVARLPVIADADHGYGNALNVMRTVVELERAGIAALTIEDTLLPAQFGRKSTDLICVEEGVGKIRAALEARVDPALTIIARTNAELIDVDAVIQRTLAYQEAGADGICLVGVRDFAHLEAIAEHLHIPLMLVTYGNPQLRDDARLARLGVRVVVNGHAAYFAAIKATYDCLREERGAVASDLTASELSKKYTFPEEYQAWARDYMEVKE
>NZ_CP031449.1|WP_096861805.1|6111363_6111927_+|hypothetical-protein
MMGPFRRLAHLIDQGRQLDAALAGDPFALPAPEDRYSVRQLHGLYPRRHPGLYAPLLGSLALLLGAAPLGLAALRLALPEAPLRPLGWLSALPLLAAWLWLIALLSRGASLGPRLASGETSGLVALGGGACAWLLFNSRAMQRYMELVYAQRLYRAQSANRPGSAQRRLANQAAYRERKRRERSGRS
>NZ_CP031449.1|WP_016852186.1|6121034_6121802_-|hypothetical-protein
MKGPEKKRAKIAIDPSSERQIVDLQRRLLLRGGLSLGALAMLSGCRLQDGDSVDKVLWAMSRWNDRVQAWLFSRTRLAPTFDPSQVASPFPFNAFYPAYNVPEIDLPEYRLQVSGRVRDKRPWSLEQLRRLPQASQVTQLICIEGWSAIGQWSGVPLRTFLELVGADTSAKYVGFKCADRYYSSLDMPSALHPQTLLALEMSGQALPEENGYPLRLRIPTKLGFKNAKHVVEIFVSNSNPGGYWEDQGYNWFSGV
>NZ_CP031449.1|WP_003161310.1|6121798_6122413_-|cytochrome-b/b6-domain-containing-protein
MNRALHAWPVRLCHWLNAYAMACLIGSGWGIYNASPLLDFRFPAWATLGGWLGGSIAWHLAAMWLLLGNGLCYLAHGLSSGHFRRDFLPLSAAGVWRDLRLALGLRLVHEPGRYNAVQRLLYWLVLALGALLVLSGLAIWKPVQLHGLTALFGGFQGARWVHFLAMAGVVGFVVVHLLLVLLVPRTLLPMIIGREWRRGRRSEG
>NZ_CP031449.1|WP_003116116.1|6122466_6123090_-|hypothetical-protein
MLRLKASPALFFGLLLASAASFAAQPPAGMLQPLRGTIQQAADDHLQLKARNGQQLTVRLTDKTAIRAVSLAKPEDIQPDSFIGTAAVPQPDGTLKALEVHVFAPSLRGSGEGHRPWENADGSASTMTNGTVGNLVVSQGRRMTVKYGDGEKTVVVPDDVPIVSLEPGERSLLKPGAKVVLFPQKGADGSLTALAISVGKDGVTPPM
>NZ_CP031449.1|WP_003095515.1|6123227_6123917_+|DNA-binding-response-regulator
MRILVIEDDTKTGEYLKKGLGESGYAVDWSQHGADGLYLALENRYDLVVLDVMLPGLDGWQIMEVLRKKHDVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTLLRRGVVREAEQVQLADLQLDVLRRKVSRQGQVIALTNKEFALLHLLMRREGEVLSRTLIASEVWDMNFDSDTNVVDVAIKRLRAKVDNPFPNKLIHTVRGIGYVCEERPCPPAAP
>NZ_CP031449.1|WP_096861801.1|6123895_6125287_+|HAMP-domain-containing-protein
MPARRSLTLYAALLFAAVAALVVSAVGFYLYRSVEEAMLRRSDVMVAGRVEHFRNLLRDNLTLAELKARPRLFENMLGNEQDILLLGQPGEAPIVAVNPRHERLPSLRVVAAGQALNPSVVHAALTHDGIPMRVLAAEVLVGGREPLQITAAHLLLGETRMLAQYRDRVIAAVLLAFLGTALLGWLVLRHGLRPLRTLAAKAAEIHPTSLDTRLDVAAAPAELQQVAQSFNAMLERLDDGYQRLQQFSADLAHEIRTPIGSLMGHGQVALRQPRSNEEYQALIASNQEELERIARMVESILFLARADDVRAAVERSRLDLGEELRRQAEYFEGLAEERGLSLDIQVSGQLRADPQLFRRALSNLLANAIRYASADSLIEVRGLRRSGEFLLSVENACDRLPAEPLSRLFDRFYRGDAARSDAQSSGLGLAIVQAIMRLHGGRSEASAPAPGRIRFELAFPAQD
>NZ_CP031449.1|WP_003095519.1|6125277_6126594_-|MFS-transporter
MFSPLVTFPALYTATLLMLAGSGLFTTYIGLRLTQEGAGDLWVGGLMASYYFGLVCGGKFGHKLIASFGHIRSYVACAGIATVTVLLHALVDQLEVWLLLRFITGAVMMNQYMVIESWLNEQAESHQRGKVFAGYMVAVDLGLVLGQGLLALSPTLDYKPLLLVAICFASCLIPLAMTRRVHPAKLVAAPLEVRFFWQRVPQALGTIFIAGLMVGAFYGLAPVYANRNGLDASQSSFFVGMCIVAGFCAQWPLGWLSDRLDRSWLIRGNAVLLCLASIPMWGLVTLPYWLLLANGFVTGMLLFTLYPLAVALANDHVEQPRRVALSAMLLTTYGVGACIGPLVAGALMRHFGPGLFYMLVSGYAVLLVFWVQPKRVTGEHRVDEAPLQHVAMPDTVSPMAATLDPRVEEVPEELVVEAPANIGRSDGEPDAGEKPAQS
>NZ_CP031449.1|WP_003121132.1|6126813_6127926_-|fatty-acid-desaturase
MNRPASPAMRDDRELTPEQLAAFGAELDALRLRTLADLGADDARYIRRVRAAVRVCCWSGRALLMFGWLPPTWLLGSLLLGLGKILENMELGHNVMHGQYDWMNDPEFAGRAYEWDIAGPSDFWRHTHNHIHHTYTNVLGKDDDVGYGVVRLFPEQRWKPFYRWQPLWVTLQALLFQYAVAIQHLRLDKYAKGRLDKAELMPLLRRLRAKLGRQWTKDYLLFPLLGLFAGGFGAVFVGNLLANVLRNLWTFTVIFCGHFTEKAVVFPPSVLEGETRGHWYLRQLRGSSNLEGGPLFHILTGNLSHQIEHHLYPDLPARRYAALSREVREIARRYGQTYNSGRLGRQFLTVLRRIWVYRLPPREPLPAGRG
>NZ_CP031449.1|WP_003123551.1|6127922_6129023_-|ferredoxin-reductase
MALLPLALLTPLLAPLRRLAARGWLREADVDGLLRHAHPLASLNRHYARVEARYWVADDMLALALRTAPGWPPARPGQHIQLLAERDGVRVGRSYSLTRVVGERLEIAVKRHPDGLLSPWLCEHLAVGQRVELQPAQGDLRWPMQAEAVCLLAAGSGLTPLLGLLREALENGYRGPVLWLHYVRHPGQRAWLGELEALAARHPNLELRWSLTRGARADGCLEGHFQPRHLDGWAADLARSQALACGPAAFVEAVGEQLGARFAGLQTESFSVPRWRSGEAPREVRLRFARSQREVSGDSAASLLEQAEAHGLRPAHGCRQGICASCTCVLLSGCVRDLRSGALCSEPGQPIRLCVSAAHGDLALDL
>NZ_CP031449.1|WP_003107570.1|6129181_6129811_+|TetR-family-transcriptional-regulator
MSSPRAEQKQQTRHALMSAARHLMESGRGFGSLSLREVTRAAGIVPAGFYRHFSDMDQLGLALVAEVDETFRATLRAVRRNEFELGGLIDASVRIFLDAVGANRSQFLFLAREQYGGSLPIRQAIASLRQRITDDLAADLALLNKMPHLDGAALDVFADLVVKTVFATLPELIDPPAADLPPHLMPAAKITHQLRFIMIGGKHWHGLPG
>NZ_CP031449.1|WP_003095526.1|6130040_6130544_+|urease-accessory-protein-UreE
MLVIHQRLPARSPRWDEELHLTYEARSKSRLRCFAASGEEVGLFLERGQPPLADGDCLEARDGRLVRVVARSERLLHVTCASPLELTRAAYHLGNRHVALQVGDGWLRLLDDYVLKAMLEQLGATVEAIEAPFQPEHGAYGGGHHHSHHGEAEFNYAPRLHQFGVRR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP031449_2	2.1\|1833141\|58\|NZ_CP031449\|CRISPRCasFinder	1833141-1833198	58	NZ_CP031449.1	4214241-4214298	0	1.0
NZ_CP031449_3	3.1\|2266185\|48\|NZ_CP031449\|CRISPRCasFinder	2266185-2266232	48	NZ_CP031449.1	2267285-2267332	0	1.0

1. spacer 2.1|1833141|58|NZ_CP031449|CRISPRCasFinder matches to position: 4214241-4214298, mismatch: 0, identity: 1.0

cggataacgccggtggcgttattcgccctacggcccgactacggggccgcgggacgca	CRISPR spacer
cggataacgccggtggcgttattcgccctacggcccgactacggggccgcgggacgca	Protospacer
**********************************************************

2. spacer 3.1|2266185|48|NZ_CP031449|CRISPRCasFinder matches to position: 2267285-2267332, mismatch: 0, identity: 1.0

ggcgccgggcacggtgctgacggcgagctatacgcacaattggtgagg	CRISPR spacer
ggcgccgggcacggtgctgacggcgagctatacgcacaattggtgagg	Protospacer
************************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

16211 : 70272

Shigella_phage(20.0%)

transposase,tRNA,holin

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_102076059.1\|16211_17372_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	6.8e-83	52.7
WP_003120689.1\|18130_18904_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_023092222.1\|18915_19452_-	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA
WP_003100270.1\|19783_21490_+	hypothetical protein	NA	NA	NA	NA
WP_003100271.1\|21546_23601_-\|tRNA	glycine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_003097276.1\|23600_24548_-\|tRNA	glycine--tRNA ligase subunit alpha	NA	NA	NA	NA
WP_003097280.1\|24652_25204_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA
WP_003097282.1\|25347_26235_+	lysophospholipid acyltransferase	NA	NA	NA	NA
WP_003100272.1\|26319_26586_+	PilZ domain-containing protein	NA	NA	NA	NA
WP_003097286.1\|26732_27386_+	7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter	A0A2I7SAW6	Vibrio_phage	2.6e-55	55.1
WP_042853987.1\|27447_27720_-	hypothetical protein	NA	NA	NA	NA
WP_003120685.1\|28012_28330_-	hypothetical protein	NA	NA	NA	NA
WP_003107053.1\|28478_29852_-	Trk system potassium transporter TrkA	NA	NA	NA	NA
WP_003122291.1\|29879_31184_-	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA
WP_009316076.1\|31180_32125_-\|tRNA	methionyl-tRNA formyltransferase	NA	NA	NA	NA
WP_003107059.1\|32179_32686_-	peptide deformylase	E3SLL2	Synechococcus_phage	9.7e-18	39.3
WP_003097294.1\|32824_33850_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_003118479.1\|33984_35073_+	DNA-protecting protein DprA	S6BFL3	Thermus_phage	6.7e-24	36.5
WP_003097300.1\|35113_35671_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
WP_003111202.1\|35680_36658_-	quinone oxidoreductase	NA	NA	NA	NA
WP_003097311.1\|36848_37766_+	coproporphyrinogen III oxidase	NA	NA	NA	NA
WP_016264001.1\|37823_38648_+	shikimate dehydrogenase (NADP+)	NA	NA	NA	NA
WP_003111200.1\|38758_39745_+	phospholipase C	NA	NA	NA	NA
WP_023113419.1\|39725_41012_+	peptidylprolyl isomerase	NA	NA	NA	NA
WP_003458422.1\|41008_41611_+	hypothetical protein	NA	NA	NA	NA
WP_009875636.1\|41614_43168_-	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	1.7e-20	23.6
WP_003115797.1\|43172_44096_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_096861992.1\|44112_45624_-\|holin	choline-sulfatase	NA	NA	NA	NA
WP_010792427.1\|45751_46651_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003114635.1\|46661_47039_+	DOPA 4,5-dioxygenase	NA	NA	NA	NA
WP_003097330.1\|47017_47383_-	Hpt domain-containing protein	NA	NA	NA	NA
WP_003111192.1\|47390_48014_-	DNA-binding response regulator	NA	NA	NA	NA
WP_003120671.1\|48199_49006_-	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_003097340.1\|49002_50211_-	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_003111191.1\|50314_51202_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003097345.1\|51302_51518_+	hypothetical protein	NA	NA	NA	NA
WP_003097347.1\|51701_51929_+	DUF1161 domain-containing protein	NA	NA	NA	NA
WP_023089591.1\|52225_53914_+	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_116151292.1\|54026_64592_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	NA	NA	NA
WP_019485604.1\|64588_64906_+	hypothetical protein	NA	NA	NA	NA
WP_003114586.1\|65158_65860_+\|transposase	transposase	NA	NA	NA	NA
WP_016252823.1\|67280_67973_+\|transposase	transposase	NA	NA	NA	NA
WP_071534680.1\|67982_68387_+	hypothetical protein	NA	NA	NA	NA
WP_071535147.1\|68386_68716_+	hypothetical protein	NA	NA	NA	NA
WP_071533946.1\|69155_69398_+	hydrolase	NA	NA	NA	NA
WP_033954923.1\|69579_70272_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_2

544399 : 611431

Pseudomonas_phage(76.27%)

terminase,tRNA,holin,integrase

attL 541675:541690|attR 622278:622293

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
541675:541690	attL	NA	NA	NA	NA
WP_009876707.1\|544399_545323_-	transaldolase	A0A1D8KMI9	Synechococcus_phage	3.8e-12	30.0
WP_031632324.1\|545402_546407_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_031628314.1\|546510_547617_+\|integrase	integrase	L7TP61	Pseudomonas_virus	3.5e-214	99.7
WP_003160559.1\|547626_547911_-	hypothetical protein	A0A2K8HN48	Pseudomonas_phage	8.0e-46	100.0
WP_031629037.1\|547986_548373_-	hypothetical protein	L7TJJ9	Pseudomonas_virus	3.6e-65	100.0
WP_116151299.1\|550210_550717_-	hypothetical protein	L7TI83	Pseudomonas_virus	5.5e-90	98.8
WP_023123612.1\|550709_550904_-	hypothetical protein	NA	NA	NA	NA
WP_116151301.1\|550911_551673_-	hypothetical protein	Q5QF32	Pseudomonas_virus	1.1e-145	96.8
WP_016263630.1\|551669_552158_-	DUF1643 domain-containing protein	A0A0U1W068	Pseudomonas_phage	7.5e-92	95.7
WP_116151302.1\|552154_552850_-	hypothetical protein	Q5QF30	Pseudomonas_virus	1.2e-87	72.8
WP_033987707.1\|552935_553175_+	hypothetical protein	NA	NA	NA	NA
WP_031637056.1\|554258_554528_+	hypothetical protein	NA	NA	NA	NA
WP_071556516.1\|554735_554975_-	hypothetical protein	Q9ZXI4	Pseudomonas_virus	1.2e-10	82.4
WP_033949925.1\|555286_555532_-	hypothetical protein	NA	NA	NA	NA
WP_033949922.1\|555867_556710_-	DNA adenine methylase	Q5QF26	Pseudomonas_virus	2.9e-75	52.9
WP_023464875.1\|557439_557649_-	LexA repressor	A0A0U1UNR9	Pseudomonas_phage	3.1e-31	98.6
WP_071556514.1\|557645_558872_-	recombination-associated protein RdgC	A0A0U1SXS1	Pseudomonas_phage	6.8e-166	97.7
WP_015975415.1\|558898_559402_-	single-stranded DNA-binding protein	A0A0U1VYM4	Pseudomonas_phage	6.5e-91	100.0
WP_004349164.1\|559405_560011_-	3'-5' exonuclease	A0A0U1W072	Pseudomonas_phage	7.3e-113	100.0
WP_021264620.1\|560140_561157_-	DUF1351 domain-containing protein	A0A0U1UNR0	Pseudomonas_phage	5.5e-121	98.8
WP_015975436.1\|561161_561917_-	hypothetical protein	A0A0U1UNQ9	Pseudomonas_phage	5.3e-145	100.0
WP_004354971.1\|562178_562550_-	hypothetical protein	A0A2K8HNX4	Pseudomonas_phage	3.4e-60	99.2
WP_004354968.1\|562546_562768_-	hypothetical protein	A0A0U1SZL8	Pseudomonas_phage	2.2e-35	100.0
WP_016263324.1\|562897_563401_-	hypothetical protein	J7I0S8	Pseudomonas_phage	5.0e-99	98.2
WP_004354960.1\|563528_563900_-	carbon storage regulator	A0A0U1UNS3	Pseudomonas_phage	2.7e-62	100.0
WP_034075293.1\|563934_564147_-	hypothetical protein	A0A0U1VYM8	Pseudomonas_phage	1.7e-32	97.1
WP_004349174.1\|565827_566094_+	DUF1654 domain-containing protein	A0A2K8HZW3	Pseudomonas_phage	2.3e-42	100.0
WP_015975417.1\|566130_566928_-	XRE family transcriptional regulator	A0A2K8HKD5	Pseudomonas_phage	1.9e-148	100.0
WP_004349179.1\|567035_567236_+	Cro/Cl family transcriptional regulator	A0A2K8HL98	Pseudomonas_phage	1.8e-28	100.0
WP_010793311.1\|567237_568254_+	hypothetical protein	A0A0U1UNR4	Pseudomonas_phage	5.6e-150	100.0
WP_021264627.1\|568240_569098_+	hypothetical protein	A0A2K8HNW6	Pseudomonas_phage	8.4e-147	99.6
WP_023082372.1\|569090_569642_+	hypothetical protein	A0A2K8I9A9	Pseudomonas_phage	1.7e-100	99.5
WP_023082373.1\|569697_570312_+	hypothetical protein	A0A0U1VZM0	Pseudomonas_phage	9.0e-111	98.5
WP_004349189.1\|570390_570885_+	hypothetical protein	A0A0U1VYN2	Pseudomonas_phage	3.2e-82	99.4
WP_023980885.1\|570887_571112_-	hypothetical protein	A0A0U1UNS7	Pseudomonas_phage	2.7e-33	98.6
WP_034003997.1\|571264_571831_+	hypothetical protein	A0A2K8HN72	Pseudomonas_phage	1.9e-94	94.7
WP_079385194.1\|571827_573111_+\|terminase	PBSX family phage terminase large subunit	A0A2K8HZU7	Pseudomonas_phage	7.1e-259	99.8
WP_096861953.1\|573120_575439_+	hypothetical protein	A0A2K8HKC3	Pseudomonas_phage	0.0e+00	99.9
WP_071536934.1\|575585_576716_+	hypothetical protein	A0A2K8HL89	Pseudomonas_phage	4.2e-178	99.7
WP_004349199.1\|576728_578021_+	DUF4043 family protein	A0A2K8IBP1	Pseudomonas_phage	2.2e-252	100.0
WP_010793302.1\|578079_578559_+	hypothetical protein	A0A2K8HNV7	Pseudomonas_phage	6.4e-80	100.0
WP_004354927.1\|578623_579496_+	hypothetical protein	A0A0U1UNM5	Pseudomonas_phage	8.2e-166	100.0
WP_004354925.1\|579492_580170_+	hypothetical protein	A0A0U1UNR8	Pseudomonas_phage	8.7e-131	100.0
WP_004349207.1\|580166_580373_+	hypothetical protein	A0A0U1SXT5	Pseudomonas_phage	1.3e-29	100.0
WP_004349209.1\|580353_580761_+	hypothetical protein	A0A0U1UNR7	Pseudomonas_phage	8.7e-70	100.0
WP_010793300.1\|580784_581210_+	hypothetical protein	A0A2K8HN63	Pseudomonas_phage	5.9e-85	100.0
WP_004354920.1\|581209_582067_+	hypothetical protein	A0A0U1VYN7	Pseudomonas_phage	4.0e-157	100.0
WP_033991422.1\|582069_585033_+	hypothetical protein	A0A2K8HKA1	Pseudomonas_phage	0.0e+00	97.3
WP_034003993.1\|585032_586223_+	hypothetical protein	A0A0U1UNT0	Pseudomonas_phage	1.4e-224	99.5
WP_004349221.1\|586290_586881_+	hypothetical protein	A0A0U1VYN6	Pseudomonas_phage	1.3e-101	100.0
WP_034003991.1\|586885_589483_+	hypothetical protein	A0A0U1W0G7	Pseudomonas_phage	0.0e+00	99.7
WP_034004042.1\|590033_590639_+	hypothetical protein	Q5QF56	Pseudomonas_virus	6.4e-109	99.5
WP_033937569.1\|590639_592532_+	hypothetical protein	A0A0U1SZM6	Pseudomonas_phage	8.5e-184	99.8
WP_058202043.1\|593066_595229_+	hypothetical protein	A0A0U1T4P1	Pseudomonas_phage	0.0e+00	99.9
WP_034011972.1\|595213_606550_+	SAM-dependent methyltransferase	L7TID4	Pseudomonas_virus	0.0e+00	93.3
WP_015975423.1\|606644_606902_+\|holin	holin	A0A0U1UNM6	Pseudomonas_phage	2.1e-37	100.0
WP_015975424.1\|606885_607419_+	lysozyme	A0A0U1UNS2	Pseudomonas_phage	1.1e-101	100.0
WP_034011971.1\|607415_607934_+	hypothetical protein	A0A0U1UNS0	Pseudomonas_phage	1.3e-70	97.7
WP_015975464.1\|607944_608538_+	DUF1737 domain-containing protein	A0A0U1VYP2	Pseudomonas_phage	2.4e-76	100.0
WP_071536920.1\|608613_609243_+	DUF4124 domain-containing protein	A0A2K8IBL8	Pseudomonas_phage	3.2e-55	61.7
WP_048764667.1\|609280_609547_+	hypothetical protein	L7TP56	Pseudomonas_virus	4.1e-44	97.7
WP_033957458.1\|609940_610423_-	hypothetical protein	L7THB5	Pseudomonas_virus	1.1e-87	96.9
WP_033957461.1\|610412_610790_-	helix-turn-helix domain-containing protein	L7TKV7	Pseudomonas_virus	1.3e-62	99.2
WP_058202042.1\|610915_611431_-	hypothetical protein	L7TIE6	Pseudomonas_virus	3.9e-91	89.5
622278:622293	attR	NA	NA	NA	NA

DBSCAN-SWA_3

658876 : 725136

Pseudomonas_phage(15.79%)

transposase,tRNA,integrase

attL 667254:667276|attR 723405:723427

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003090677.1\|658876_660799_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	5.1e-128	38.5
WP_003099089.1\|660816_661350_+	translation initiation factor IF-3	A0A2I7S9Q1	Vibrio_phage	2.0e-13	38.1
WP_003090673.1\|661411_661606_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_003099086.1\|661629_661986_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_003090666.1\|662083_663100_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2I2L4E3	Orpheovirus	7.9e-27	33.3
WP_034037380.1\|663134_665513_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_003090661.1\|665516_665819_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	1.0e-11	38.9
WP_003090655.1\|665799_666156_+	MerR family transcriptional regulator	NA	NA	NA	NA
667254:667276	attL	NA	NA	NA	NA
WP_096861967.1\|667956_668841_-	hypothetical protein	NA	NA	NA	NA
WP_003279762.1\|669243_669438_+	AlpA family transcriptional regulator	A0A1V0E8E5	Vibrio_phage	6.1e-13	54.0
WP_096861968.1\|669771_670428_+	inovirus Gp2 family protein	NA	NA	NA	NA
WP_096861969.1\|670919_673490_+	hypothetical protein	A0A2D0ZND4	Rhodococcus_phage	3.5e-15	27.3
WP_001389365.1\|673978_674743_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_001297012.1\|674830_674944_+	hypothetical protein	NA	NA	NA	NA
WP_000376623.1\|675249_675750_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001993321.1\|675768_675948_+	hypothetical protein	NA	NA	NA	NA
WP_000259031.1\|675877_676717_-	sulfonamide-resistant dihydropteroate synthase Sul1	NA	NA	NA	NA
WP_000679427.1\|676710_677058_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_096862040.1\|677279_678323_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_096862041.1\|678562_679402_-	AadA family aminoglycoside 3''-O-nucleotidyltransferase	NA	NA	NA	NA
WP_065761995.1\|679513_679876_-	cupin domain-containing protein	NA	NA	NA	NA
WP_000415714.1\|680080_680737_-	quinolone resistance pentapeptide repeat protein QnrVC1	NA	NA	NA	NA
WP_096862039.1\|681904_683587_+\|transposase	transposase	NA	NA	NA	NA
WP_021264342.1\|683589_684498_+	TniB	NA	NA	NA	NA
WP_023444278.1\|684494_685712_+	hypothetical protein	NA	NA	NA	NA
WP_003155741.1\|685773_686397_+	recombinase family protein	A0A0C4UR34	Shigella_phage	1.7e-35	47.6
WP_096862044.1\|686617_687661_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_023444277.1\|687934_688621_-	haloacid dehalogenase type II	NA	NA	NA	NA
WP_063860203.1\|688668_689424_-	subclass B1 metallo-beta-lactamase DIM-1	NA	NA	NA	NA
WP_000845048.1\|689577_690591_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_116151304.1\|690529_690790_+	hypothetical protein	NA	NA	NA	NA
WP_058355578.1\|691258_691453_+	DNA-binding protein	NA	NA	NA	NA
WP_096861997.1\|691455_694137_+	hypothetical protein	NA	NA	NA	NA
WP_096861998.1\|694154_695153_+	alkaline phosphatase	NA	NA	NA	NA
WP_096862012.1\|695192_698462_+	site-specific DNA-methyltransferase	NA	NA	NA	NA
WP_096861999.1\|698458_698965_+	5'-nucleotidase	NA	NA	NA	NA
WP_096862000.1\|698976_701700_+	helicase	A0A1B1IUI1	uncultured_Mediterranean_phage	1.5e-40	24.8
WP_096862001.1\|701732_703937_+	hypothetical protein	NA	NA	NA	NA
WP_096862002.1\|703914_704142_-	hypothetical protein	NA	NA	NA	NA
WP_096862003.1\|704429_705674_+	hypothetical protein	NA	NA	NA	NA
WP_096862013.1\|706269_709041_+	hypothetical protein	NA	NA	NA	NA
WP_096862004.1\|710126_710309_-	hypothetical protein	NA	NA	NA	NA
WP_017940311.1\|710318_710816_-	DNA repair protein RadC	NA	NA	NA	NA
WP_096862005.1\|710787_711738_-	hydrolase or metal-binding protein	NA	NA	NA	NA
WP_096862006.1\|711829_712837_-	alkaline phosphatase	A6XMH8	Bacillus_virus	2.9e-50	39.6
WP_096862007.1\|712993_713224_+	antitoxin	NA	NA	NA	NA
WP_020308731.1\|713223_713628_+\|tRNA	tRNA(fMet)-specific endonuclease VapC	NA	NA	NA	NA
WP_096862008.1\|713714_714683_-	DUF932 domain-containing protein	A0A0H4INH5	Stenotrophomonas_phage	1.1e-59	42.5
WP_036992178.1\|714742_715075_-	hypothetical protein	NA	NA	NA	NA
WP_096862009.1\|715440_716662_+\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	9.2e-115	74.4
WP_096862010.1\|716790_717063_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_010953434.1\|717050_717344_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_096862011.1\|717337_718747_-\|integrase	site-specific integrase	A0A2H4IYX8	uncultured_Caudovirales_phage	3.6e-54	36.8
WP_012613967.1\|719069_720182_-\|integrase	integrase	A0A0U4JIT5	Pseudomonas_phage	1.3e-38	34.1
WP_023106402.1\|720181_720397_-	hypothetical protein	NA	NA	NA	NA
WP_031631092.1\|720470_720857_-	hypothetical protein	L7TJJ9	Pseudomonas_virus	6.8e-64	98.4
WP_012613970.1\|721702_722497_+	peptidase P60	A0A0S2SY75	Pseudomonas_phage	1.6e-144	96.8
WP_116151306.1\|722896_724035_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	2.2e-46	38.7
723405:723427	attR	NA	NA	NA	NA
WP_034037836.1\|724418_724745_+	hypothetical protein	NA	NA	NA	NA
WP_023087213.1\|724851_725136_+	XRE family transcriptional regulator	A0A2D1GR59	Pseudomonas_phage	5.2e-37	87.1

DBSCAN-SWA_4

849157 : 919352

Pseudomonas_phage(62.5%)

protease,integrase,terminase,tRNA,holin,tail

attL 855607:855624|attR 892446:892463

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003097649.1\|849157_849526_+\|protease	ATP-dependent Clp protease adaptor ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.9e-11	41.6
WP_003090432.1\|849553_851830_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	3.4e-163	42.8
WP_002553999.1\|851911_852130_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_003097644.1\|852234_852942_-\|tRNA	arginyl-tRNA-protein transferase	NA	NA	NA	NA
WP_003108768.1\|852996_853677_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_015648973.1\|853714_854665_-	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	5.4e-62	43.0
WP_003119977.1\|854892_857328_+	DNA translocase FtsK	G1D482	Mycobacterium_virus	1.9e-87	52.8
855607:855624	attL	NA	NA	NA	NA
WP_003090414.1\|857353_857980_+	outer-membrane lipoprotein carrier protein LolA	NA	NA	NA	NA
WP_003097632.1\|857989_859315_+	replication-associated recombination protein A	G3MBE0	Bacillus_virus	1.2e-80	39.2
WP_003097631.1\|859436_860717_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	8.2e-98	45.4
WP_003160439.1\|860718_862116_+	siroheme synthase	NA	NA	NA	NA
WP_003097628.1\|862120_863095_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_003097625.1\|863182_864166_-	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	3.5e-141	74.0
WP_003119979.1\|864162_864498_-	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	1.5e-38	69.4
WP_003090391.1\|864494_864800_-	sulfurtransferase complex subunit TusB	NA	NA	NA	NA
WP_003090389.1\|864799_865159_-	sulfurtransferase TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.4e-34	61.7
WP_003090387.1\|865155_865551_-	sulfurtransferase TusD	A0A2H4JA39	uncultured_Caudovirales_phage	2.7e-47	72.1
WP_003090386.1\|865661_866330_-	BAX inhibitor (BI)-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	1.5e-90	82.1
WP_016852955.1\|866665_867733_-\|integrase	integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	8.3e-136	68.7
WP_003116724.1\|867734_867971_-	DUF4224 domain-containing protein	A0A2H4JF29	uncultured_Caudovirales_phage	3.8e-17	53.2
WP_042853816.1\|870409_870916_-	hypothetical protein	L7TI83	Pseudomonas_virus	1.4e-88	96.4
WP_042853817.1\|870912_871278_-	hypothetical protein	H2BD40	Pseudomonas_phage	1.9e-60	95.5
WP_116151307.1\|871274_872060_-	hypothetical protein	Q5QF32	Pseudomonas_virus	1.9e-137	95.4
WP_016263630.1\|872056_872545_-	DUF1643 domain-containing protein	A0A0U1W068	Pseudomonas_phage	7.5e-92	95.7
WP_116151309.1\|872541_873240_-	hypothetical protein	Q5QF30	Pseudomonas_virus	9.5e-133	97.3
WP_033970681.1\|873440_873749_-	DUF4406 domain-containing protein	A0A2K8I958	Pseudomonas_phage	5.7e-05	46.9
WP_052156336.1\|873812_875147_-	hypothetical protein	Q6V7R9	Burkholderia_virus	1.3e-98	49.2
WP_034033531.1\|875647_877558_-	DNA methyltransferase	A0A0U1T6D1	Pseudomonas_phage	1.7e-269	89.3
WP_042853820.1\|878167_879913_-	DUF2813 domain-containing protein	H2BD46	Pseudomonas_phage	2.5e-299	94.5
WP_023094671.1\|879916_880681_-	hypothetical protein	J7I0T4	Pseudomonas_phage	6.0e-104	68.1
WP_003116739.1\|880693_880894_-	hypothetical protein	H2BD48	Pseudomonas_phage	4.3e-30	100.0
WP_042853821.1\|880900_881719_-	hypothetical protein	H2BD49	Pseudomonas_phage	4.7e-155	99.3
WP_042853822.1\|881730_882534_-	hypothetical protein	H2BD50	Pseudomonas_phage	2.6e-150	96.3
WP_042853823.1\|882662_883316_-	hypothetical protein	NA	NA	NA	NA
WP_016263322.1\|883308_883491_-	hypothetical protein	Q9MC67	Pseudomonas_phage	2.7e-23	96.6
WP_010793151.1\|883487_883709_-	hypothetical protein	A0A127KNM7	Pseudomonas_phage	2.8e-30	95.7
WP_016263324.1\|883844_884348_-	hypothetical protein	J7I0S8	Pseudomonas_phage	5.0e-99	98.2
WP_096862026.1\|884923_885295_-	carbon storage regulator	J7I430	Pseudomonas_phage	2.5e-63	99.2
WP_042853826.1\|885343_885607_-	hypothetical protein	A0A127KNM4	Pseudomonas_phage	3.7e-45	98.9
WP_033953764.1\|885664_885871_-	hypothetical protein	A0A0U4IJ22	Pseudomonas_phage	3.0e-34	97.1
WP_034004099.1\|885881_886088_-	hypothetical protein	A0A0U4B0I0	Pseudomonas_phage	1.5e-30	98.5
WP_023101084.1\|886772_887012_-	DUF1654 domain-containing protein	A0A127KND4	Pseudomonas_phage	2.0e-37	96.2
WP_034004098.1\|887105_887423_+	DUF1654 domain-containing protein	A0A127KNY9	Pseudomonas_phage	6.6e-49	97.1
WP_031635265.1\|887476_888076_-	helix-turn-helix domain-containing protein	A0A0M4QWY1	Salmonella_phage	9.3e-52	51.7
WP_019396726.1\|888224_888467_+	XRE family transcriptional regulator	A0A127KNT2	Pseudomonas_phage	7.5e-37	100.0
WP_034051636.1\|888484_888667_-	hypothetical protein	NA	NA	NA	NA
WP_034004095.1\|888725_889238_-	hypothetical protein	A0A127KNL4	Pseudomonas_phage	2.1e-89	98.8
WP_042853827.1\|889320_889893_+	hypothetical protein	J7I4J9	Pseudomonas_phage	3.5e-101	98.9
WP_042853828.1\|889895_890780_+	hypothetical protein	NA	NA	NA	NA
WP_003103373.1\|890829_891438_+	hypothetical protein	A0A2H4J6S4	uncultured_Caudovirales_phage	3.4e-41	43.9
WP_010793142.1\|891430_891874_+	RusA family crossover junction endodeoxyribonuclease	J7I4J7	Pseudomonas_phage	4.1e-73	93.9
WP_031641999.1\|891902_892772_+	hypothetical protein	J7HXH6	Pseudomonas_phage	2.9e-163	96.9
892446:892463	attR	NA	NA	NA	NA
WP_023085526.1\|892987_893209_+	hypothetical protein	NA	NA	NA	NA
WP_004349441.1\|893554_893944_+	hypothetical protein	H2BD73	Pseudomonas_phage	9.9e-63	100.0
WP_034004085.1\|893936_894221_+\|holin	phage holin family protein	H2BD74	Pseudomonas_phage	2.3e-40	96.8
WP_034004082.1\|894229_894829_+\|terminase	terminase small subunit	H2BD75	Pseudomonas_phage	9.9e-46	59.9
WP_034004080.1\|894812_896108_+\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	3.7e-146	59.7
WP_023109893.1\|896110_897466_+	DUF4055 domain-containing protein	A0A0H5AWC7	Pseudomonas_phage	2.1e-96	45.8
WP_034004077.1\|897462_898542_+	hypothetical protein	A0A0S2SY77	Pseudomonas_phage	2.6e-201	98.1
WP_003103389.1\|898670_899414_+	hypothetical protein	A0A0H5AWD1	Pseudomonas_phage	2.2e-87	75.5
WP_023087394.1\|899423_900395_+	hypothetical protein	A0A0M3LQL5	Mannheimia_phage	1.9e-110	65.0
WP_034004075.1\|900436_900922_+	hypothetical protein	NA	NA	NA	NA
WP_034004073.1\|900905_901370_+	hypothetical protein	H9EB35	Vibrio_phage	3.0e-10	36.4
WP_034004070.1\|901369_901759_+	hypothetical protein	A0A2H4JAS3	uncultured_Caudovirales_phage	2.8e-33	55.0
WP_034004067.1\|901760_901988_+	hypothetical protein	NA	NA	NA	NA
WP_042853829.1\|901991_902666_+	hypothetical protein	A0A0S2SY81	Pseudomonas_phage	3.0e-115	96.0
WP_022579906.1\|902662_903073_+	hypothetical protein	A0A1B0VMI0	Pseudomonas_phage	3.0e-25	44.1
WP_042853830.1\|903140_903794_+\|tail	phage tail protein	A0A2H4IZV5	uncultured_Caudovirales_phage	7.7e-60	52.3
WP_022579905.1\|903803_904184_+	hypothetical protein	A0A1B0VMH4	Pseudomonas_phage	9.8e-23	45.7
WP_012075338.1\|904246_904510_+	hypothetical protein	A0A2R3UAE2	Siphoviridae_environmental_samples	1.4e-15	46.0
WP_096862025.1\|904506_907731_+\|tail	phage tail tape measure protein	A0A0S2SYD9	Pseudomonas_phage	3.6e-118	37.2
WP_023130692.1\|907736_908075_+	hypothetical protein	A0A0S2SYI2	Pseudomonas_phage	2.2e-58	96.4
WP_023130691.1\|908071_908821_+\|tail	phage minor tail protein L	A0A0S2SY57	Pseudomonas_phage	2.5e-147	99.2
WP_023101106.1\|908823_909579_+	hypothetical protein	A0A0S2SY75	Pseudomonas_phage	3.3e-147	98.8
WP_023436164.1\|909604_909853_+	hypothetical protein	A0A0S2SYE8	Pseudomonas_phage	9.1e-38	97.6
WP_023101107.1\|909836_910067_-	hypothetical protein	A0A0S2SY71	Pseudomonas_phage	4.8e-17	97.7
WP_023101108.1\|910103_910388_-	hypothetical protein	A0A0S2SYA2	Pseudomonas_phage	7.0e-42	98.8
WP_096862038.1\|911267_911879_+\|tail	tail assembly protein	A0A0S2SYS2	Pseudomonas_phage	3.1e-87	83.7
WP_116151311.1\|912231_915816_+	DUF1983 domain-containing protein	A0A0S2SYC5	Pseudomonas_phage	0.0e+00	75.8
WP_071557737.1\|915812_916097_+	hypothetical protein	NA	NA	NA	NA
WP_096862045.1\|916093_916759_+	hypothetical protein	A0A0S2SYG5	Pseudomonas_phage	4.3e-58	46.1
WP_116151313.1\|916986_917754_+	hypothetical protein	A0A2H4J1J6	uncultured_Caudovirales_phage	6.1e-56	51.8
WP_034004052.1\|917798_918428_+	glycoside hydrolase family 19 protein	A0A125RNP1	Pseudomonas_phage	4.6e-110	94.7
WP_031755474.1\|918424_918793_+	hypothetical protein	H2BDD6	Pseudomonas_virus	4.8e-43	83.6
WP_003130908.1\|918789_919053_+	hypothetical protein	B5WZU5	Pseudomonas_phage	4.5e-35	88.5
WP_003160542.1\|919088_919352_+	hypothetical protein	Q9MC87	Pseudomonas_phage	9.0e-44	94.3

DBSCAN-SWA_5

2897779 : 2977842

Pseudomonas_phage(23.91%)

capsid,lysis,integrase,transposase,terminase,plate,tRNA,tail,head,portal,holin

attL 2887899:2887916|attR 2983199:2983216

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2887899:2887916	attL	NA	NA	NA	NA
WP_000845048.1\|2897779_2898793_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_063844482.1\|2898999_2899236_+	trimethoprim-resistant dihydrofolate reductase DfrB5	A0A0H5ARK7	Pseudomonas_phage	1.6e-12	55.4
WP_001209508.1\|2899349_2900141_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	NA	NA	NA	NA
WP_000679427.1\|2900304_2900652_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|2900645_2901485_+	sulfonamide-resistant dihydropteroate synthase Sul1	NA	NA	NA	NA
WP_001993321.1\|2901414_2901594_-	hypothetical protein	NA	NA	NA	NA
WP_001389365.1\|2901727_2902492_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_096861854.1\|2902880_2903201_-	hypothetical protein	NA	NA	NA	NA
WP_058076426.1\|2903478_2903916_+	peptidase S24	A0A1W6JNS2	Morganella_phage	2.4e-17	37.0
WP_096861843.1\|2903908_2904154_+	hypothetical protein	A0A218MNF2	uncultured_virus	2.8e-23	66.2
WP_011914410.1\|2904209_2905229_+\|integrase	integrase	NA	NA	NA	NA
WP_011914409.1\|2905225_2907391_+\|integrase	integrase	NA	NA	NA	NA
WP_026084028.1\|2907535_2908099_-	chlorite dismutase	NA	NA	NA	NA
WP_071534424.1\|2908122_2908485_-	cupin domain-containing protein	NA	NA	NA	NA
WP_096861844.1\|2908934_2910029_+	DUF4113 domain-containing protein	I6RSM4	Salmonella_phage	1.3e-83	46.5
WP_096861855.1\|2910138_2910426_-	hypothetical protein	NA	NA	NA	NA
WP_096861856.1\|2910715_2911171_+	hypothetical protein	NA	NA	NA	NA
WP_096861845.1\|2911202_2911610_+	hypothetical protein	NA	NA	NA	NA
WP_096861857.1\|2912066_2912435_-	hypothetical protein	NA	NA	NA	NA
WP_096861846.1\|2913533_2913731_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_096861847.1\|2913742_2914912_-	DUF4102 domain-containing protein	B7SYF8	Stenotrophomonas_phage	7.8e-71	38.0
WP_003086015.1\|2915498_2915813_+	hypothetical protein	NA	NA	NA	NA
WP_003104747.1\|2915827_2916187_-	hypothetical protein	NA	NA	NA	NA
WP_003112595.1\|2916435_2919081_+	bifunctional lysylphosphatidylglycerol flippase/synthetase MprF	NA	NA	NA	NA
WP_003112596.1\|2919082_2920366_+	virulence factor family protein	NA	NA	NA	NA
WP_003454537.1\|2920526_2921075_+	cytochrome b	A0A0U2QLA7	Escherichia_phage	3.1e-22	46.7
WP_003104754.1\|2921129_2923034_-	potassium transporter Kup	A7J6G4	Paramecium_bursaria_Chlorella_virus	5.5e-74	32.2
WP_003159670.1\|2922989_2923118_+	hypothetical protein	NA	NA	NA	NA
WP_034002925.1\|2924144_2924831_+	DUF159 family protein	A0A2K8I970	Pseudomonas_phage	5.5e-117	86.0
WP_034002922.1\|2924812_2925079_-	hypothetical protein	A0A0U4JX18	Pseudomonas_phage	5.2e-31	70.5
WP_079384502.1\|2926078_2926696_-\|lysis	lysis protein	NA	NA	NA	NA
WP_034002921.1\|2926665_2927295_-	glycoside hydrolase family 19 protein	J7I4M6	Pseudomonas_phage	6.1e-78	71.8
WP_014603877.1\|2927406_2927592_+	hypothetical protein	NA	NA	NA	NA
WP_034002919.1\|2927629_2928682_-	phage late control protein	A0A2H4JBF6	uncultured_Caudovirales_phage	1.3e-133	70.1
WP_015649042.1\|2928695_2928902_-\|tail	tail protein X	A0A2H4J9Z9	uncultured_Caudovirales_phage	9.6e-17	62.7
WP_096861848.1\|2928876_2929716_-\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	8.6e-80	53.9
WP_096861849.1\|2929724_2932415_-\|tail	phage tail protein	A0A2H4JG00	uncultured_Caudovirales_phage	1.3e-41	28.9
WP_014603883.1\|2932553_2932850_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_033964226.1\|2932859_2933369_-\|tail	phage major tail tube protein	Q7M2A5	Pseudomonas_phage	3.4e-87	98.2
WP_023107128.1\|2933381_2934542_-\|tail	phage tail sheath family protein	Q38068	Phage_PS17	2.3e-216	98.2
WP_079384501.1\|2934585_2934768_-	hypothetical protein	NA	NA	NA	NA
WP_096861850.1\|2935046_2937128_-\|tail	phage tail protein	Q9ZXK6	Pseudomonas_virus	1.2e-111	50.3
WP_033964219.1\|2937124_2937655_-\|tail	phage tail protein I	A0A2H4JDH5	uncultured_Caudovirales_phage	1.2e-50	57.5
WP_014603889.1\|2937651_2938536_-\|plate	baseplate assembly protein	A0A2H4JFK9	uncultured_Caudovirales_phage	7.4e-114	73.6
WP_014603890.1\|2938532_2938859_-	hypothetical protein	A0A2H4JA09	uncultured_Caudovirales_phage	2.3e-33	65.7
WP_014603891.1\|2938868_2939090_-	hypothetical protein	NA	NA	NA	NA
WP_034002907.1\|2939146_2939704_-\|plate	phage baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	1.5e-48	66.0
WP_034002905.1\|2939700_2940237_-	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	1.3e-33	43.9
WP_034002902.1\|2940229_2940898_-	hypothetical protein	A0A2H4JBV1	uncultured_Caudovirales_phage	1.3e-65	59.7
WP_015649052.1\|2940897_2941212_-	hypothetical protein	A0A2H4J879	uncultured_Caudovirales_phage	2.1e-18	45.8
WP_014603895.1\|2941214_2941400_-	hypothetical protein	NA	NA	NA	NA
WP_014603896.1\|2941401_2942439_-\|capsid	major capsid protein	A0A0C5ABI0	Bacteriophage	1.7e-69	40.5
WP_014603897.1\|2942454_2942805_-\|head	head decoration protein	A0A291AUM0	Sinorhizobium_phage	2.5e-12	42.2
WP_033964211.1\|2942818_2944039_-	S49 family peptidase	A0A219YAK4	Aeromonas_phage	5.3e-46	34.7
WP_031652606.1\|2944041_2945655_-\|portal	phage portal protein	A0A067ZJA4	Vibrio_phage	5.5e-91	39.6
WP_014603900.1\|2945657_2945873_-	hypothetical protein	NA	NA	NA	NA
WP_044261430.1\|2945885_2947772_-\|terminase	phage terminase large subunit family protein	A0A2D1GMT1	Marinobacter_phage	2.7e-161	50.0
WP_023127296.1\|2947815_2948340_-	hypothetical protein	A0A2D1GMW4	Marinobacter_phage	1.5e-18	37.2
WP_014603903.1\|2948455_2948818_-	hypothetical protein	NA	NA	NA	NA
WP_015649058.1\|2949388_2949760_-	hypothetical protein	NA	NA	NA	NA
WP_096861851.1\|2949756_2951970_-	toprim domain-containing protein	A0A2D1GN57	Marinobacter_phage	1.7e-188	46.9
WP_034002897.1\|2951966_2952176_-	conjugal transfer protein TraR	NA	NA	NA	NA
WP_019726483.1\|2952168_2952723_-	hypothetical protein	NA	NA	NA	NA
WP_071537145.1\|2953054_2953309_-	hypothetical protein	NA	NA	NA	NA
WP_078451169.1\|2953452_2954193_+	helix-turn-helix transcriptional regulator	A0A1B0Z078	Pseudomonas_phage	2.1e-53	63.3
WP_034002895.1\|2954336_2954528_+	hypothetical protein	NA	NA	NA	NA
WP_050158035.1\|2954524_2955340_+	BRO domain protein	G1JX52	Mycobacterium_phage	1.5e-28	42.2
WP_096861852.1\|2955336_2955648_+	hypothetical protein	NA	NA	NA	NA
WP_033949272.1\|2955657_2955951_+	DNA-binding protein	NA	NA	NA	NA
WP_033949274.1\|2956104_2956413_+	hypothetical protein	NA	NA	NA	NA
WP_023107149.1\|2956409_2956724_+	transcriptional regulator	NA	NA	NA	NA
WP_033949277.1\|2956765_2957044_+	hypothetical protein	NA	NA	NA	NA
WP_033949279.1\|2957114_2957678_+	hypothetical protein	NA	NA	NA	NA
WP_033949281.1\|2957674_2957914_+	hypothetical protein	NA	NA	NA	NA
WP_033949284.1\|2958479_2958962_+	hypothetical protein	NA	NA	NA	NA
WP_033949286.1\|2958958_2960794_+	DNA cytosine methyltransferase	A0A1I9KFW0	Aeromonas_phage	2.6e-97	38.2
WP_033949289.1\|2960790_2961174_+	hypothetical protein	NA	NA	NA	NA
WP_071537142.1\|2961170_2962232_+	hypothetical protein	A0A2K8HL62	Pseudomonas_phage	1.5e-60	46.2
WP_033949296.1\|2962427_2962841_+	hypothetical protein	A0A0S2SYB5	Pseudomonas_phage	3.0e-17	79.4
WP_049950076.1\|2962952_2963237_+	hypothetical protein	A8YQQ5	Burkholderia_virus	6.2e-06	40.0
WP_033949299.1\|2963220_2964852_-\|integrase	integrase	Q3HQV4	Burkholderia_phage	1.7e-156	55.7
WP_019725859.1\|2964880_2966215_+	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA
WP_003104756.1\|2966276_2966738_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.0e-34	48.7
WP_029611033.1\|2966730_2967123_+	hypothetical protein	NA	NA	NA	NA
WP_003085996.1\|2967172_2968621_-	magnesium transporter	NA	NA	NA	NA
WP_029611034.1\|2968947_2969463_+	DUF4124 domain-containing protein	NA	NA	NA	NA
WP_029611035.1\|2969508_2969961_-	hypothetical protein	NA	NA	NA	NA
WP_003123234.1\|2970013_2970517_-	hypothetical protein	NA	NA	NA	NA
WP_029611036.1\|2970608_2970884_-\|holin	phage holin family protein	A0A0U4J8T9	Pseudomonas_phage	4.9e-16	51.1
WP_003104765.1\|2970876_2971251_-	hypothetical protein	H2BD73	Pseudomonas_phage	2.1e-25	51.9
WP_003085984.1\|2971415_2971946_-	hypothetical protein	NA	NA	NA	NA
WP_029611037.1\|2972116_2972830_+	helix-turn-helix transcriptional regulator	A0A1B0VRI7	Pseudomonas_phage	2.7e-58	49.0
WP_003085981.1\|2973461_2973647_-	carbon storage regulator	A0A2I7RT00	Vibrio_phage	9.9e-13	68.6
WP_003085971.1\|2973831_2975070_-	aspartokinase	NA	NA	NA	NA
WP_003112602.1\|2975217_2977842_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	2.4e-75	37.6
2983199:2983216	attR	NA	NA	NA	NA

DBSCAN-SWA_6

4071847 : 4124615

uncultured_Caudovirales_phage(29.17%)

plate,tRNA,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003129196.1\|4071847_4072873_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	8.3e-109	58.1
WP_003085061.1\|4072951_4073521_-	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_003099587.1\|4073604_4073958_+	dihydroneopterin aldolase	NA	NA	NA	NA
WP_003099585.1\|4073948_4074491_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_003099584.1\|4074463_4075696_-\|tRNA	multifunctional tRNA nucleotidyltransferase/2',3'-cyclic phosphodiesterase/2' nucleotidase/2'phosphatase	A0A076G5T8	Escherichia_phage	2.6e-77	43.1
WP_016252919.1\|4075739_4076246_-	DUF4136 domain-containing protein	NA	NA	NA	NA
WP_042853567.1\|4076339_4077893_-	SpoVR family protein	NA	NA	NA	NA
WP_003099579.1\|4077889_4079161_-	YeaH/YhbH family protein	A0A140HLI1	Bacillus_phage	4.2e-09	37.2
WP_003085078.1\|4079261_4081184_-	PrkA family serine protein kinase	NA	NA	NA	NA
WP_003085081.1\|4081463_4081796_-	thiosulfate sulfurtransferase	NA	NA	NA	NA
WP_019681087.1\|4081839_4082691_-	symmetrical bis(5'-nucleosyl)-tetraphosphatase	A0A2H4J0P0	uncultured_Caudovirales_phage	2.8e-09	33.3
WP_003085085.1\|4082690_4083071_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA
WP_003161932.1\|4083107_4083914_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_003123920.1\|4084029_4085016_-	4-hydroxythreonine-4-phosphate dehydrogenase 1	NA	NA	NA	NA
WP_003109024.1\|4085012_4086305_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_023129218.1\|4086285_4089057_-	LPS-assembly protein LptD	NA	NA	NA	NA
WP_010793494.1\|4089183_4090200_+	aminoglycoside phosphotransferase	NA	NA	NA	NA
WP_003099549.1\|4090196_4090871_+	nucleotidyltransferase family protein	NA	NA	NA	NA
WP_003459406.1\|4090872_4091631_+	molecular chaperone DjlA	NA	NA	NA	NA
WP_009875782.1\|4091631_4092693_-	DUF3530 family protein	NA	NA	NA	NA
WP_042853568.1\|4092844_4095238_+	PAS domain S-box protein	NA	NA	NA	NA
WP_003085103.1\|4095283_4095916_+	DNA-binding response regulator	NA	NA	NA	NA
WP_003085106.1\|4096044_4097079_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_003085109.1\|4097312_4098422_+	polyamine ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	7.8e-28	34.4
WP_003099539.1\|4098477_4099524_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003113206.1\|4099638_4100886_+	ABC transporter permease	NA	NA	NA	NA
WP_034007349.1\|4100991_4101822_+	ABC transporter permease	NA	NA	NA	NA
WP_003085122.1\|4101945_4102620_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
WP_042853569.1\|4102619_4103438_+	phosphoglycolate phosphatase	NA	NA	NA	NA
WP_003142794.1\|4103510_4104989_+	anthranilate synthase component I	NA	NA	NA	NA
WP_003113203.1\|4105306_4105621_-	transcription regulatory protein PrtN	NA	NA	NA	NA
WP_003113202.1\|4105720_4106491_-	transcriptional regulator	A0A1B0Z078	Pseudomonas_phage	1.4e-71	59.1
WP_003085132.1\|4106948_4107149_+	repressor PtrB	W6ATC1	Enterobacter_phage	3.7e-05	58.3
WP_003118907.1\|4107196_4107556_+	hypothetical protein	NA	NA	NA	NA
WP_003118908.1\|4107919_4108369_+	hypothetical protein	B5TK61	Pseudomonas_phage	5.0e-26	53.3
WP_034041275.1\|4108390_4108906_+	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	9.2e-32	42.3
WP_003085141.1\|4108902_4109460_+\|plate	phage baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	4.6e-45	71.1
WP_003085143.1\|4109612_4109939_+	hypothetical protein	A0A2H4JA09	uncultured_Caudovirales_phage	3.2e-30	60.2
WP_003085151.1\|4109935_4110823_+	bacteriophage protein	S4TNY7	Salmonella_phage	5.3e-88	59.8
WP_010895511.1\|4110815_4111349_+\|tail	phage tail protein I	Q9ZXK7	Pseudomonas_virus	3.0e-62	64.6
WP_015502281.1\|4111350_4113459_+\|tail	tail fiber	Q9ZXK6	Pseudomonas_virus	6.5e-225	52.3
WP_024928377.1\|4113467_4113908_+	hypothetical protein	NA	NA	NA	NA
WP_003109051.1\|4113950_4115111_+\|tail	tail protein	Q38068	Phage_PS17	2.7e-188	83.4
WP_003085175.1\|4115123_4115627_+\|tail	phage major tail tube protein	Q7M2A5	Pseudomonas_phage	8.0e-65	73.5
WP_003085178.1\|4115641_4115986_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_034041277.1\|4116155_4118393_+\|tail	phage tail length tape measure protein	NA	NA	NA	NA
WP_024928379.1\|4118402_4119275_+\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	5.1e-75	51.4
WP_003101635.1\|4119249_4119456_+	hypothetical protein	A0A2H4J9Z9	uncultured_Caudovirales_phage	2.3e-18	64.2
WP_023435428.1\|4119513_4120503_+	phage late control D family protein	A0A2H4JBF6	uncultured_Caudovirales_phage	9.8e-107	55.8
WP_003113192.1\|4120535_4121165_+	glycoside hydrolase family 19 protein	A0A125RNP1	Pseudomonas_phage	1.6e-86	78.0
WP_004355109.1\|4121161_4121524_+	hypothetical protein	NA	NA	NA	NA
WP_031800321.1\|4121520_4121778_+	hypothetical protein	A0A125RNP3	Pseudomonas_phage	1.1e-17	63.4
WP_023085654.1\|4122125_4122731_+	glutamine amidotransferase	A0A0P0IKJ1	Acinetobacter_phage	4.6e-75	65.8
WP_003085203.1\|4122732_4123782_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	1.8e-111	57.8
WP_096861871.1\|4123778_4124615_+	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	1.1e-69	56.9

DBSCAN-SWA_7

4305152 : 4345377

Pseudomonas_phage(67.39%)

capsid,protease,lysis,integrase,terminase,tRNA,holin,head,portal,tail

attL 4293641:4293656|attR 4310118:4310133

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4293641:4293656	attL	NA	NA	NA	NA
WP_031757523.1\|4305152_4306202_-\|integrase	integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	1.0e-101	53.9
WP_003158850.1\|4306201_4306444_-	DUF4224 domain-containing protein	A0A2H4JF29	uncultured_Caudovirales_phage	1.1e-16	60.3
WP_096861985.1\|4306427_4306784_-	hypothetical protein	NA	NA	NA	NA
WP_096861970.1\|4306788_4307478_-	hypothetical protein	A0A0A0YUE3	Pseudomonas_phage	8.2e-28	35.6
WP_096269139.1\|4307650_4307842_-	hypothetical protein	A0A1W6JTB8	Pseudomonas_phage	2.5e-27	98.3
WP_096861971.1\|4307960_4308668_-	hypothetical protein	A0A0A0YUE9	Pseudomonas_phage	1.6e-47	100.0
WP_096861972.1\|4308664_4308865_-	hypothetical protein	A0A1W6JTA6	Pseudomonas_phage	3.7e-21	98.2
WP_023103752.1\|4308861_4309116_-	hypothetical protein	A0A0A0YUF2	Pseudomonas_phage	1.4e-38	98.8
WP_021205288.1\|4309215_4309449_-	hypothetical protein	A0A0A0YQ28	Pseudomonas_phage	6.6e-38	100.0
WP_023875741.1\|4309451_4309844_-	DNA-binding response regulator	A0A1W6JTA9	Pseudomonas_phage	6.5e-30	62.5
WP_096861973.1\|4309909_4310650_-	helix-turn-helix domain-containing protein	A0A1W6JTC8	Pseudomonas_phage	3.8e-55	66.2
4310118:4310133	attR	NA	NA	NA	NA
WP_096861974.1\|4310687_4311026_+	Cro/Cl family transcriptional regulator	A0A2H4J1L8	uncultured_Caudovirales_phage	2.2e-10	57.4
WP_003085704.1\|4311022_4311415_+	hypothetical protein	NA	NA	NA	NA
WP_031294203.1\|4311353_4311614_+	hypothetical protein	NA	NA	NA	NA
WP_031757525.1\|4311774_4312020_-	hypothetical protein	NA	NA	NA	NA
WP_079380365.1\|4312109_4312307_+	hypothetical protein	A0A1W6JTC3	Pseudomonas_phage	5.6e-14	69.2
WP_015648196.1\|4312303_4312612_+	hypothetical protein	A0A0A0YWH5	Pseudomonas_phage	2.3e-46	96.1
WP_024928451.1\|4312608_4312884_+	hypothetical protein	A0A1W6JTB7	Pseudomonas_phage	1.7e-40	100.0
WP_024928450.1\|4313009_4313372_+	hypothetical protein	A0A1W6JTB9	Pseudomonas_phage	2.4e-63	100.0
WP_050157694.1\|4314159_4314474_+	hypothetical protein	NA	NA	NA	NA
WP_033977464.1\|4314470_4314788_+	hypothetical protein	NA	NA	NA	NA
WP_033977466.1\|4314784_4315210_+	hypothetical protein	NA	NA	NA	NA
WP_096861975.1\|4315206_4316313_+	DUF1376 domain-containing protein	H2BD69	Pseudomonas_phage	8.6e-27	53.0
WP_096861976.1\|4316306_4318118_+	bifunctional DNA primase/helicase	A0A0U4B0G9	Pseudomonas_phage	1.6e-259	70.1
WP_023093241.1\|4318114_4318393_+	hypothetical protein	A0A1W6JTC1	Pseudomonas_phage	8.1e-43	95.7
WP_004353175.1\|4318389_4318779_+	hypothetical protein	A0A1W6JTD2	Pseudomonas_phage	2.2e-70	99.2
WP_023083817.1\|4319318_4319846_+	hypothetical protein	S5MQL6	Escherichia_phage	1.4e-27	61.2
WP_004353177.1\|4319930_4320263_+\|holin	phage holin, lambda family	A0A1W6JTC7	Pseudomonas_phage	1.9e-54	96.4
WP_096861977.1\|4320259_4320877_+	glycoside hydrolase family 19 protein	A0A0U4JP23	Pseudomonas_phage	1.2e-107	93.1
WP_024928444.1\|4320873_4321116_+	hypothetical protein	A0A0H5AWC3	Pseudomonas_phage	6.4e-20	53.2
WP_096861978.1\|4321112_4321625_+\|lysis	lysis protein	A0A1B0Z001	Pseudomonas_phage	1.4e-72	93.5
WP_003119047.1\|4321637_4321820_+	hypothetical protein	NA	NA	NA	NA
WP_022580268.1\|4321819_4322149_+	HNH endonuclease	B5WZZ4	Pseudomonas_phage	5.1e-28	53.7
WP_078464133.1\|4322238_4322427_+	hypothetical protein	Q9MC37	Pseudomonas_phage	9.1e-14	70.0
WP_003119048.1\|4322563_4323055_+	hypothetical protein	S4TNN3	Salmonella_phage	3.2e-10	37.0
WP_057390174.1\|4323058_4324738_+\|terminase	terminase large subunit	A0A2H4JDK9	uncultured_Caudovirales_phage	1.9e-195	66.0
WP_096861979.1\|4324740_4325964_+\|portal	phage portal protein	A0A2H4JFN7	uncultured_Caudovirales_phage	6.3e-172	73.3
WP_015649331.1\|4325947_4326592_+\|head,protease	HK97 family phage prohead protease	A0A2H4JA51	uncultured_Caudovirales_phage	3.5e-89	75.7
WP_096861980.1\|4326588_4327803_+\|capsid	phage major capsid protein	A0A2H4J8D1	uncultured_Caudovirales_phage	1.5e-157	68.3
WP_003085760.1\|4327854_4328058_+	hypothetical protein	A0A2H4JG33	uncultured_Caudovirales_phage	1.8e-07	50.0
WP_003085762.1\|4328057_4328381_+\|head,tail	phage gp6-like head-tail connector protein	A0A2H4J8C5	uncultured_Caudovirales_phage	9.1e-30	65.6
WP_022580265.1\|4328380_4328707_+\|head,tail	head-tail adaptor protein	A0A2D1GNG1	Pseudomonas_phage	2.8e-18	57.3
WP_071556460.1\|4328712_4328907_+	hypothetical protein	NA	NA	NA	NA
WP_096861981.1\|4328910_4329483_+	hypothetical protein	A0A2D1GNN2	Pseudomonas_phage	3.5e-40	50.0
WP_096861982.1\|4329475_4329862_+	DUF3168 domain-containing protein	A0A2D1GNT4	Pseudomonas_phage	2.6e-39	65.4
WP_034014150.1\|4329893_4330400_+	hypothetical protein	A0A2D1GNF2	Pseudomonas_phage	8.6e-59	74.1
WP_031691341.1\|4330470_4330815_+	hypothetical protein	NA	NA	NA	NA
WP_079386508.1\|4330811_4331045_+	hypothetical protein	NA	NA	NA	NA
WP_096861983.1\|4331825_4335119_+\|tail	phage tail tape measure protein	A0A2D1GNQ1	Pseudomonas_phage	4.8e-65	35.4
WP_096861984.1\|4335118_4335418_+	hypothetical protein	NA	NA	NA	NA
WP_031691339.1\|4335420_4335759_+\|tail	minor tail family protein	K7PKL8	Enterobacterial_phage	8.4e-26	51.8
WP_057390180.1\|4335755_4336499_+\|tail	phage minor tail protein L	A0A0S2SY57	Pseudomonas_phage	4.2e-110	73.9
WP_057390181.1\|4336501_4337257_+	hydrolase Nlp/P60	A0A0S2SY75	Pseudomonas_phage	2.8e-138	91.5
WP_034014143.1\|4337253_4337856_+\|tail	tail assembly protein	A0A2H4J1H0	uncultured_Caudovirales_phage	4.6e-59	61.1
WP_116151345.1\|4338368_4341926_+	DUF1983 domain-containing protein	A0A0S2SYC5	Pseudomonas_phage	0.0e+00	64.3
WP_071557737.1\|4341922_4342207_+	hypothetical protein	NA	NA	NA	NA
WP_096862045.1\|4342203_4342869_+	hypothetical protein	A0A0S2SYG5	Pseudomonas_phage	4.3e-58	46.1
WP_116151347.1\|4343096_4343864_+	hypothetical protein	A0A2H4J1J6	uncultured_Caudovirales_phage	5.5e-57	53.1
WP_003105684.1\|4344138_4345377_+\|tRNA	tyrosine--tRNA ligase	A0A2C9CX69	Yersinia_phage	7.8e-53	33.3

DBSCAN-SWA_8

4993007 : 5044416

Pseudomonas_phage(80.88%)

lysis,integrase,terminase,holin,tail,portal

attL 4999035:4999057|attR 5041415:5041437

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015649078.1\|4993007_4993643_+	protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	7.8e-41	52.3
WP_003115226.1\|4993688_4994582_+	lipoprotein NlpD/LppB	A0A0S2SXL7	Bacillus_phage	3.0e-06	34.3
WP_003113871.1\|4994686_4995691_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	7.0e-36	37.3
WP_003092272.1\|4996117_4996441_-	Ferredoxin 1	NA	NA	NA	NA
WP_079386749.1\|4996507_4999087_-	DNA mismatch repair protein MutS	A0A1V0SGG8	Hokovirus	3.2e-24	22.1
4999035:4999057	attL	NA	NA	NA	NA
WP_014602574.1\|4999146_5000121_-\|integrase	integrase	A0A2H4J8E5	uncultured_Caudovirales_phage	1.1e-102	57.6
WP_071538228.1\|5000130_5000340_-	DUF4224 domain-containing protein	A0A1B0VMB6	Pseudomonas_phage	2.9e-13	57.8
WP_096861746.1\|5000559_5000850_-	hypothetical protein	A0A1B0Z2L6	Pseudomonas_phage	1.5e-47	97.9
WP_031629755.1\|5000922_5001306_-	HNH endonuclease	A0A0U4IIE4	Pseudomonas_phage	2.2e-46	98.8
WP_096861745.1\|5001735_5002005_-	DUF3850 domain-containing protein	A0A2I7RB38	Vibrio_phage	1.1e-15	50.6
WP_096861744.1\|5002004_5003141_-	hypothetical protein	A0A125RNQ8	Pseudomonas_phage	1.1e-88	70.8
WP_023103693.1\|5003137_5003344_-	hypothetical protein	H2BDF2	Pseudomonas_virus	3.5e-27	85.5
WP_096861743.1\|5003307_5003556_-	hypothetical protein	H2BD39	Pseudomonas_phage	1.4e-38	95.1
WP_096861742.1\|5003552_5004182_-	hypothetical protein	H2BDG4	Pseudomonas_virus	2.3e-69	65.2
WP_096861741.1\|5004432_5004969_-	DUF4406 domain-containing protein	A0A1B0YZW9	Pseudomonas_phage	9.4e-96	95.5
WP_073652347.1\|5004965_5005343_-	hypothetical protein	NA	NA	NA	NA
WP_034076557.1\|5005409_5005712_-	hypothetical protein	A0A0U4ISH7	Pseudomonas_phage	8.2e-41	96.0
WP_034076560.1\|5005711_5006074_-	hypothetical protein	A0A0U4KL54	Pseudomonas_phage	1.1e-52	94.2
WP_100209532.1\|5006022_5006226_-	hypothetical protein	NA	NA	NA	NA
WP_031630603.1\|5006460_5006709_-	hypothetical protein	A0A0U3TGX2	Pseudomonas_phage	1.0e-33	87.8
WP_034066242.1\|5006719_5007103_-	LuxR family transcriptional regulator	A0A0U4IIG4	Pseudomonas_phage	1.8e-61	95.3
WP_094202342.1\|5007414_5008281_-	hypothetical protein	A0A0U4JP11	Pseudomonas_phage	2.6e-156	99.0
WP_057390219.1\|5008502_5008769_-	hypothetical protein	A0A2H4J103	uncultured_Caudovirales_phage	5.2e-15	50.0
WP_094202333.1\|5008996_5009221_-	hypothetical protein	A0A0U4B0L2	Pseudomonas_phage	1.0e-27	91.9
WP_015649351.1\|5009238_5009445_-	hypothetical protein	A0A0U4IJ22	Pseudomonas_phage	3.9e-34	97.1
WP_003159007.1\|5009455_5009662_-	hypothetical protein	A0A0U4IBH8	Pseudomonas_phage	3.1e-31	98.5
WP_023517913.1\|5010377_5010632_+	DUF1654 domain-containing protein	A0A127KNY9	Pseudomonas_phage	6.3e-26	70.4
WP_079279252.1\|5011116_5011557_-	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_052161481.1\|5011558_5011822_-	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_079278862.1\|5012027_5012864_-	XRE family transcriptional regulator	L7TH81	Pseudomonas_virus	3.3e-87	63.2
WP_015649348.1\|5012935_5013136_+	regulatory protein cro	A0A0U4K5A6	Pseudomonas_phage	3.1e-20	77.3
WP_031285126.1\|5013416_5013677_+	hypothetical protein	NA	NA	NA	NA
WP_034066246.1\|5013841_5014558_+	helix-turn-helix domain-containing protein	A0A0U4IBP5	Pseudomonas_phage	1.1e-91	91.5
WP_094202336.1\|5014554_5015238_+	hypothetical protein	A0A1B0YZY6	Pseudomonas_phage	7.9e-124	98.7
WP_003159465.1\|5015234_5015441_+	hypothetical protein	A0A1B0YZY8	Pseudomonas_phage	3.1e-31	94.1
WP_094202337.1\|5015437_5015809_+	recombinase	NA	NA	NA	NA
WP_058168138.1\|5015805_5016153_+	RusA family crossover junction endodeoxyribonuclease	A0A0H5AUD2	Pseudomonas_phage	2.2e-29	57.0
WP_033950491.1\|5016149_5016449_+	hypothetical protein	A0A1B0YZZ2	Pseudomonas_phage	2.4e-48	97.9
WP_021205614.1\|5016486_5017161_+	hypothetical protein	A0A1B0YZZ3	Pseudomonas_phage	1.8e-120	100.0
WP_058168140.1\|5017271_5017754_-	transcriptional regulator	Q7Y3V7	Yersinia_phage	7.5e-28	49.3
WP_033971890.1\|5017800_5017983_-	type II toxin-antitoxin system HicA family toxin	A0A2H4JDU5	uncultured_Caudovirales_phage	4.2e-08	55.0
WP_043494869.1\|5018182_5018515_+\|holin	phage holin, lambda family	A0A1B0YZZ1	Pseudomonas_phage	7.4e-43	80.0
WP_073665565.1\|5018511_5019129_+	glycoside hydrolase family 19 protein	A0A1W6JTC9	Pseudomonas_phage	8.2e-104	91.2
WP_023875728.1\|5019125_5019368_+	hypothetical protein	A0A0H5AWC3	Pseudomonas_phage	3.2e-19	51.9
WP_116151353.1\|5019364_5019835_+\|lysis	lysis protein	A0A1B0Z001	Pseudomonas_phage	4.8e-72	92.9
WP_003159066.1\|5019831_5020575_+	hypothetical protein	A0A1B0Z000	Pseudomonas_phage	6.4e-135	99.6
WP_010791974.1\|5020694_5021240_+	hypothetical protein	A0A1B0Z033	Pseudomonas_phage	1.5e-96	100.0
WP_096861739.1\|5021211_5023176_+\|terminase	phage terminase large subunit family protein	A0A1B0Z2K0	Pseudomonas_phage	0.0e+00	99.7
WP_003159476.1\|5023166_5023382_+	hypothetical protein	A0A1B0YZU1	Pseudomonas_phage	8.5e-32	100.0
WP_096861738.1\|5023381_5025028_+\|portal	phage portal protein	A0A1B0YZU4	Pseudomonas_phage	0.0e+00	99.8
WP_079988383.1\|5024987_5027081_+	peptidase S14	A0A1B0YZU0	Pseudomonas_phage	0.0e+00	99.9
WP_023110592.1\|5027147_5027465_+	DUF2190 family protein	A0A1B0YZT7	Pseudomonas_phage	1.6e-50	100.0
WP_023110593.1\|5027461_5027791_+	hypothetical protein	A0A1B0YZU3	Pseudomonas_phage	3.1e-57	100.0
WP_033950511.1\|5027787_5028258_+	hypothetical protein	A0A1W6JT75	Pseudomonas_phage	1.2e-86	98.7
WP_015980908.1\|5028261_5028456_+	hypothetical protein	A0A1W6JT79	Pseudomonas_phage	1.5e-27	98.4
WP_096861737.1\|5028457_5029210_+	hypothetical protein	A0A1B0YZT8	Pseudomonas_phage	2.6e-136	99.2
WP_071537778.1\|5029291_5029933_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	A0A1W6JT76	Pseudomonas_phage	7.2e-111	95.8
WP_031640281.1\|5029994_5030297_+	hypothetical protein	A0A1B0YZV7	Pseudomonas_phage	4.1e-48	99.0
WP_096861736.1\|5030399_5032883_+\|tail	tail length tape measure protein	A0A1B0YZV6	Pseudomonas_phage	0.0e+00	98.3
WP_096861735.1\|5032922_5033444_+	hypothetical protein	A0A1W6JT98	Pseudomonas_phage	9.7e-98	99.4
WP_096861734.1\|5033443_5035141_+	hypothetical protein	A0A1W6JTA3	Pseudomonas_phage	1.6e-311	95.4
WP_096861733.1\|5035143_5035554_+	hypothetical protein	A0A1B0YZV0	Pseudomonas_phage	8.5e-65	96.3
WP_096861732.1\|5035553_5036099_+	hypothetical protein	A0A0A0YWE1	Pseudomonas_phage	7.3e-96	96.1
WP_096861731.1\|5036111_5036516_+	hypothetical protein	A0A0A0YR47	Pseudomonas_phage	1.2e-66	98.5
WP_096861730.1\|5036512_5038171_+	hypothetical protein	A0A0A0YRR5	Pseudomonas_phage	0.0e+00	98.2
WP_096861729.1\|5038200_5038788_+	hypothetical protein	A0A1W6JT86	Pseudomonas_phage	6.0e-104	96.9
WP_096861728.1\|5038780_5038972_+	hypothetical protein	A0A1B0Z2L3	Pseudomonas_phage	3.0e-28	95.2
WP_031640240.1\|5038976_5039537_+	hypothetical protein	A0A1B0YZW5	Pseudomonas_phage	1.5e-99	98.9
WP_031691360.1\|5039536_5039818_+	hypothetical protein	A0A1W6JTD4	Pseudomonas_phage	1.0e-45	98.9
WP_096861727.1\|5039810_5040374_+\|tail	phage tail protein	A0A0A0YRS1	Pseudomonas_phage	6.8e-81	81.8
WP_034011739.1\|5040373_5040676_+	hypothetical protein	A0A0S2SY61	Pseudomonas_phage	1.4e-43	88.0
WP_096861726.1\|5040672_5040912_+	hypothetical protein	A0A0A0YQ17	Pseudomonas_phage	2.6e-34	98.7
WP_083568136.1\|5040934_5041213_+	hypothetical protein	A0A0U4JEI3	Pseudomonas_phage	1.2e-46	96.7
WP_003092267.1\|5041434_5041599_+	hypothetical protein	NA	NA	NA	NA
5041415:5041437	attR	NA	NA	NA	NA
WP_012613731.1\|5041580_5042588_-	TolB-like translocation protein	NA	NA	NA	NA
WP_003092262.1\|5042735_5043242_+	CinA family protein	B5TK85	Pseudomonas_phage	8.1e-57	76.0
WP_003092260.1\|5043375_5044416_+	DNA recombination/repair protein RecA	A0A0S2MVG1	Bacillus_phage	1.5e-113	59.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP031449

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection