CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP023643	Brochothrix thermosphacta strain BII chromosome, complete genome	8 crisprs	DEDDh,csa3,cas3,WYL,DinG,csn2,cas2,cas1,cas9	3	16	9	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP023643_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023643_1

57167-57263

Orphan

Consensus_repeat	Method
GAATTCATTCGCTTTACGAGAGTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP023643_1

>merge|NZ_CP023643|1|57167-57263|CRISPRCasFinder
GAATTCATTCGCTTTACGAGAGTAGTATGGGACGGAGCGACAGCGAGTACCACTCCTTTGCTAATATCGTAGCGAATTCATTCGCTTTACGAGAGTA

>NZ_CP023643|1|1|57167-57263|CRISPRCasFinder
GAATTCATTCGCTTTACGAGAGTA	GTATGGGACGGAGCGACAGCGAGTACCACTCCTTTGCTAATATCGTAGC
GAATTCATTCGCTTTACGAGAGTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023643.1\|WP_157767246.1\|58785_60471_-\|histidine-kinase	unknown	unknown	gnl\|CDD\|225519
NZ_CP023643.1\|WP_096699152.1\|48314_49751_-\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|181973
NZ_CP023643.1\|WP_029092051.1\|61245_62715_-\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|378792
NZ_CP023643.1\|WP_069125458.1\|53340_54366_+\|ribosome-small-subunit-dependent-GTPase-A	unknown	unknown	gnl\|CDD\|234988
NZ_CP023643.1\|WP_029092042.1\|49775_51257_-\|PTS-transporter-subunit-EIIC	unknown	unknown	gnl\|CDD\|273919
NZ_CP023643.1\|WP_069125466.1\|68310_69600_+\|glycoside-hydrolase-family-125-protein	unknown	unknown	gnl\|CDD\|226068
NZ_CP023643.1\|WP_069125467.1\|69624_72330_+\|alpha-mannosidase	unknown	unknown	gnl\|CDD\|223460
NZ_CP023643.1\|WP_069120595.1\|67019_68093_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380491
NZ_CP023643.1\|WP_069125454.1\|47626_48070_-\|EutP/PduV-family-microcompartment-system-protein	unknown	unknown	gnl\|CDD\|371185
NZ_CP023643.1\|WP_029092043.1\|51466_52192_-\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP023643.1\|WP_029092039.1\|47066_47630_-\|cob(I)yrinic-acid-a,c-diamide-adenosyltransferase	unknown	unknown	gnl\|CDD\|213544
NZ_CP023643.1\|WP_029092052.1\|62734_63652_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP023643.1\|WP_029092046.1\|54461_55325_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225306
NZ_CP023643.1\|WP_069125460.1\|57317_58793_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|227095
NZ_CP023643.1\|WP_069120598.1\|60490_61108_-\|DUF624-domain-containing-protein	unknown	unknown	gnl\|CDD\|227865
NZ_CP023643.1\|WP_069125464.1\|64811_67016_-\|glycoside-hydrolase-family-92-protein	unknown	unknown	gnl\|CDD\|226067
NZ_CP023643.1\|WP_096699462.1\|63672_64554_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226666
NZ_CP023643.1\|WP_029092047.1\|55461_56568_+\|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	unknown	unknown	gnl\|CDD\|236947
NZ_CP023643.1\|WP_069132379.1\|52397_53060_-\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224336
NZ_CP023643.1\|WP_154657743.1\|52204_52381_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP023643.1\|WP_157767246.1\|58785_60471_-\|histidine-kinase	gnl\|CDD\|225519	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms].	1.74146e-52
NZ_CP023643.1\|WP_096699152.1\|48314_49751_-\|6-phospho-beta-glucosidase	gnl\|CDD\|181973	PRK09589, celA, 6-phospho-beta-glucosidase; Reviewed.	0
NZ_CP023643.1\|WP_029092051.1\|61245_62715_-\|extracellular-solute-binding-protein	gnl\|CDD\|378792	pfam12010, DUF3502, Domain of unknown function (DUF3502). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is about 140 amino acids in length. This domain is found associated with pfam01547.	3.69571e-44
NZ_CP023643.1\|WP_069125458.1\|53340_54366_+\|ribosome-small-subunit-dependent-GTPase-A	gnl\|CDD\|234988	PRK01889, PRK01889, GTPase RsgA; Reviewed.	1.94427e-137
NZ_CP023643.1\|WP_029092042.1\|49775_51257_-\|PTS-transporter-subunit-EIIC	gnl\|CDD\|273919	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.	2.35514e-155
NZ_CP023643.1\|WP_069125466.1\|68310_69600_+\|glycoside-hydrolase-family-125-protein	gnl\|CDD\|226068	COG3538, COG3538, Uncharacterized conserved protein [Function unknown].	0
NZ_CP023643.1\|WP_069125467.1\|69624_72330_+\|alpha-mannosidase	gnl\|CDD\|223460	COG0383, AMS1, Alpha-mannosidase [Carbohydrate transport and metabolism].	0
NZ_CP023643.1\|WP_069120595.1\|67019_68093_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|380491	cd06267, PBP1_LacI_sugar_binding-like, ligand binding domain of the LacI transcriptional regulator family belonging to the type 1 periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI transcriptional regulator family belonging to the type 1 periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.	4.76016e-58
NZ_CP023643.1\|WP_069125454.1\|47626_48070_-\|EutP/PduV-family-microcompartment-system-protein	gnl\|CDD\|371185	pfam10662, PduV-EutP, Ethanolamine utilisation - propanediol utilisation. Members of this family function in ethanolamine and propanediol degradation pathways. PduV may be involved in the association of the bacterial microcompartments (BMCs) to filaments.	3.75546e-72
NZ_CP023643.1\|WP_029092043.1\|51466_52192_-\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	3.59315e-57
NZ_CP023643.1\|WP_029092039.1\|47066_47630_-\|cob(I)yrinic-acid-a,c-diamide-adenosyltransferase	gnl\|CDD\|213544	TIGR00636, PduO_Nterm, ATP:cob(I)alamin adenosyltransferase. This model represents as ATP:cob(I)alamin adenosyltransferase family corresponding to the N-terminal half of Salmonella PduO, a 1,2-propanediol utilization protein that probably is bifunctional. PduO represents one of at least three families of ATP:corrinoid adenosyltransferase: others are CobA (which partially complements PduO) and EutT. It was not clear originally whether ATP:cob(I)alamin adenosyltransferase activity resides in the N-terminal region of PduO, modeled here, but this has now become clear from the characterization of MeaD from Methylobacterium extorquens. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin].	2.37963e-76
NZ_CP023643.1\|WP_029092052.1\|62734_63652_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	1.65191e-72
NZ_CP023643.1\|WP_029092046.1\|54461_55325_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225306	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism].	2.34843e-16
NZ_CP023643.1\|WP_069125460.1\|57317_58793_-\|response-regulator-transcription-factor	gnl\|CDD\|227095	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms].	4.36388e-86
NZ_CP023643.1\|WP_069120598.1\|60490_61108_-\|DUF624-domain-containing-protein	gnl\|CDD\|227865	COG5578, COG5578, Predicted integral membrane protein [Function unknown].	2.85901e-30
NZ_CP023643.1\|WP_069125464.1\|64811_67016_-\|glycoside-hydrolase-family-92-protein	gnl\|CDD\|226067	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism].	0
NZ_CP023643.1\|WP_096699462.1\|63672_64554_-\|sugar-ABC-transporter-permease	gnl\|CDD\|226666	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism].	1.69356e-136
NZ_CP023643.1\|WP_029092047.1\|55461_56568_+\|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	gnl\|CDD\|236947	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC.	0
NZ_CP023643.1\|WP_069132379.1\|52397_53060_-\|HD-domain-containing-protein	gnl\|CDD\|224336	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only].	4.82964e-31

>NZ_CP023643.1|WP_029092047.1|55461_56568_+|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC
MVQMALRNIYKKYDNSDGFAVTDFNLEIADQEFIVFVGPSGCGKSTTLRMVAGLEDISDGELYIGDKLMNEVAPKDRDIGMVFQNYALYPHMSIYDNMAFGLKLRKYSKAEIKQRVTDAADILGLTEYLERKPAALSGGQRQRVALGRAIVRDAKVFLMDEPLSNLDAKLRVAMRAEIAKLHNRLKTTTIYVTHDQTEAMTMADRIVIMKDGFVQQIGSPKEVYNHPNNVFVAGFIGSPAMNFFNVELKNGYISTEGGDMNFHVPEGKYKVLKAQGYEGKKLVFGIRPEDIHNEPLVLETLAESTMDVEVVVSELLGAETMLYTKIEDTEFVSKVPARDDYEAGDIIKLAFNLSKAHFFDTETELVIK
>NZ_CP023643.1|WP_029092046.1|54461_55325_-|helix-turn-helix-domain-containing-protein
MTPTKLLTIYPTAKTGSNPLPAHINIPHETQYLSIPETDLTASEIALLTSLYQQEIVSKPSIKRSPWHAFLTGETAILPSVSAPVRCIYFDVRFADNTQQMGEWLNLFDALFEGRRTRFLLTETSGVLVEEKTTDALTDESLASILTVLDSDFYAHSSCVIGSYYDVSPQLPAYFIEEKRLFQVHLQHLTGDSVVNIPKLLFKEHASQMTADSVILQQLKEVLIAQPDTVSLIKELWKNEGNIAHTAQKLFIHRNTLLYRIQRFYEQTGLSLKSNEALFLCYLLVGV
>NZ_CP023643.1|WP_069125458.1|53340_54366_+|ribosome-small-subunit-dependent-GTPase-A
MYTLEQLGWHTFFEDTLTEQERSRLARITVTGQNTYQALTLEGKINLKLTGSFSRTITTKFELPAVGDWVVTDETKQVIHRRLPRQTNFVRNIPGEKDERQVVAANIEEVWLVMSLNKDFNLKRLNRYVTTAWDSGAIPVIVLTKSDLVTDLEDYLAQVESEHMGIEIIACSALNGAGFDRLNKRLVEHRTIALVGSSGAGKSTLLNYLAGEEIQTTSGIRDDDSRGRHTTTSRFLLPVGDAWIIDTPGMRELQLWADSESLDTTFTDIKELTANCRFNNCTHNNEPGCAVTAALADGTLSTQRWAEYTKLQKELAYLERKANPVSQRQYMKAIIKKYKKK
>NZ_CP023643.1|WP_069132379.1|52397_53060_-|HD-domain-containing-protein
MPTNAIKESCLLATEQHVKQLLAADTTGHDWWHIHRVRKLTLTLAKEEQADLFICEMAALLHDTVDDKLVADEKIAQTELLDWLFEQQLEENVVRQIMQIIADMSFKGGSNADKVLTLEGKVVQDADRIDALGAIGIARTMVYSGSKGRPMHLPNAQPRLNMTLAEYRNGEDTAIMHFYEKLLTLKDTMNTLTGKKLAEQRHLFLETYLEQFYAEWAGER
>NZ_CP023643.1|WP_154657743.1|52204_52381_-|hypothetical-protein
MTKKRVRNIFFTLIILGLLIFQKQIGYTLSLVLAGIIIAYYIAEGIIRTRGSKHDQPK
>NZ_CP023643.1|WP_029092043.1|51466_52192_-|MurR/RpiR-family-transcriptional-regulator
MFTYEIIQKFNSLELALYEYIQKHPREILYMTVRELADAVHVSTSTVMRFCKKTGCEGYTEFRFRFKMSLAKETEKRRESNSISEIMNYFKYIDNPVFDGKVNRIVSLVRDSNRIVFVGIGTSGAIGKYGARYFSMNGKFSHYIEDPFYPVMEELDHKTVVIALSVSGETEETVLLLDKLKQHGCQIVSITNQENATISRMSVETISYYMSNERIAGDYNTASQVPVIYIIEEIARRLPIK
>NZ_CP023643.1|WP_029092042.1|49775_51257_-|PTS-transporter-subunit-EIIC
MAINYTKSAKEIIKAVGGDENINSLTHCATRLRFILNDDKIVNKDEVNKIEGVITTMEAGGQFQVVIGNHVKDVYELIMQDIKVDDSKASNSNNKNKVGVFSRIIDVISSIFAPFLYTLAACGILQGLLGVMVALGWLDTAGGTYRILNFVSWTGFTFLPVLIAITAAKKFGANIYVAVVTACALVNPDFMKMFAANDFLNNASADPKVQSMITQATNNPDTMKLINDVLGIPVLSQPLDFLGLPIKMLSYTSSVIPIILAIWILSYVQRFFERILPSVIRNLFTPLLSLVIIVPMTLLVFGPVGSTIGGAIGDVYNFLYGLSPIIAGAIVGGFWEVLVIFGVHWGITPVTVGNYASLGYDTFTALQASAVFAQAGAALGVFFKSRDSAMRGVALPAAITGFFGITEPAIYGVTLRLKTPFIMGCIAGAVGGAIAGAFRSVSWAYNMPGIATLPAFFKSGHATEFIGLLISIVVAFVLGLVLTYVVGFKEEAK
>NZ_CP023643.1|WP_096699152.1|48314_49751_-|6-phospho-beta-glucosidase
MDMTKLNDDFLWGGAVAAHQVEGAWNVGGKGPSIADVLTGGAHGVDRIITTEIEDKYRYPNHEAVDFYHTYKEDIALFAEMGFKCFRTSIAWSRIFPKGDETEANEAGLQFYDDLFDELLKYGIEPVVTLSHFEMPNHLVTAYGGWKNRQVIDFFVHYSEVVMRRYQKKVKYWMTFNEINNQKSFKAPLFGYTNSGVIFNDAENPEETMYQVVHHQLVASAKVVTIGHEINKDMQIGCMIAVVPLYPYSCHPDDMMLSVESMHDRYLFGDVHVRGEYPSYAYKEWERKGFNIEITAEDSAALRAGTVDYVGLSYYMTNTVRAGVKGEGTATAGFEGSVPNPHVKVSDWGWQIDPVGLRYALNLLHERYQLPLFIVENGFGAIDTPEADGTINDDYRIAYLKAHIEEMTKAVTLDGVDLMGYTPWGCIDCVSFTTGEYKKRYGFIYVDKHDDGSGTMARSKKKSFNWYKEVIASNGENL
>NZ_CP023643.1|WP_069125454.1|47626_48070_-|EutP/PduV-family-microcompartment-system-protein
MKKVIFMGPVGCGKTTLSQRMLGLALQYDKTQAVAFYPDIIDTPGEYILHRQYYSALSVTAAEADVIALMQSATDKTQVYSPGFGSIFPKPVIGIVSKTDIAESDAVIQQTKQRLREAGARQVFCLSAVDEMGVKELLAYLEEEEIK
>NZ_CP023643.1|WP_029092039.1|47066_47630_-|cob(I)yrinic-acid-a,c-diamide-adenosyltransferase
MKLYTKTGDAGQTKLVGGTSVAKSSERVASYGTIDELNAWLGYTLIQLNPLHADICYDIETIQQLLFDCGTDLATPAGHRAYRLSEKDVIWLEGRIDVYADEPPMIEHFIIPGGTRDAALLHVARTTTRRAERHVVALLQEEEINGAALRFLNRLSDYFYAVARAVNTRQGQTDVFYQNSDKVFHNF
>NZ_CP023643.1|WP_069125460.1|57317_58793_-|response-regulator-transcription-factor
MYKLLLVDDEYMILNGLKKIINWENMGIEISGTAKNGQEALDFIREHPVDIVITDVTMPAMSGIEFVQQAQKEGYRFHFIIMSGYQEFSYVKEGLVLGAENYLVKPVDKSELLKNVESIVEKISMIETSNSGQPQQFQTLIQEWLNLPNVTENFVTEMATYGYTIENERYTALIFKGLEKHHGFLMDLVKKNKQPYFFFQEDIFMIVFRGLKYELRDFLRQLRELLKEADFKLGLGKTEVPYTEVAHSYEQAQQVLTLCSFYELSGVQQLKRLLASLDESEVPQEISLDKLHHALTLGKMTTIEAEVQAIFTLMYEQEMTPSYVTHISFLILADIYRRFNQADQVAYQEALLEISTIKTFQKLQKIIETSIKQVEREIDVKQFSPNIQHVLQIIMERYRTDLTLKEVAEQLHLNAMYLGQLFKKETKKSFSQYLNQYRITKAKDLLLHSDYNINEISEKIGYTSTGYFYKNFKNVSGISPRDYRQQFGNEE
>NZ_CP023643.1|WP_157767246.1|58785_60471_-|histidine-kinase
MNTLLRIYAVVMIIIITLFTLIVGYTIFQTYVEDAQKDNEQTANFLTDTVNNLEQQTDLIVDNLLNDSKSIENLYEYFNLGHAEYLRATLKREGTEQRYWPQMVKQLYQLQTGIGGIQVSLNDFDETYYSNQSKKAGEKIKALPQPKNQLVISKPITQTESINSTGTFSLIADEAMIKNIITSMSGARQQQILIYSQTDQLMYSYTGNKVTKPLDVRKDLKSIISLKENVLDDNYFMTQNASGANLKVVVLTPKNIIYEAAFKNYSWILMGSLLLDGILLIILFRTFGAYSRQVEDILVTMNHVTDSNLSVRINEENKQRELKEIAVGINLMLDDINQQVKDIYLLEIEQKDAHMRALQSQINPHFLYNTLEYIRMYAVSEGVDELAEVVYSFASLLRNNTMQEKTVTLQRELEFCEKYVFLYQMRYPDRIAYHFTVDSEIDDVVVPKYIVQPLIENYFVHGIDFSRIDNAISVKVYRKNTSVVIDVIDNGKGMSDERLTEVNRLLVEDVSKERHQTSIGLMNVSDRLKLVFGDNATMVLYHNLSGGVIVRLTFEEEITDV
>NZ_CP023643.1|WP_069120598.1|60490_61108_-|DUF624-domain-containing-protein
MIGEMLENVFIRCYVIIKLNLYFILLTVMGLIVVGIGPAFLTINQLFTEHEWDYKKITWKNAWLTYKQNWKRGNALFGIYAGLSLFIGYNLYLSVQVQGILFLVIDFLLVFVLFCLFVTYSYSLVLHSRFDMGLANLIKLAFITFYSNFFMLVKLIFGIGIVLFITYKFPGLIMFATMALIQIICIFTAKQWVSIIEDKLAADGE
>NZ_CP023643.1|WP_029092051.1|61245_62715_-|extracellular-solute-binding-protein
MKKWSKVVATSLVTVLAVGALAGCGSLSGDKKAKTTDKGDTPTLLMYQIGDKPKNYDQLMEIANKRIEDKIGAKVNIQYIGWGDYEQKMSVIVSSGENYDIALAKNYVTNAQKGAYADLTKLLPEKAEAAYKMLDESYIKGNTIDGKMYAFPVNANIFSQQMLTFNKKFVDKYNLDISKVKTYADVEPLLETIKEKEPKVMPIAVGQGFRAEAGFDFALGNGLPFGVDLNGDTKKIINPFEEKGMMTAYQTLHDFYKAGYIAKDASTSNTEYPLDSSTWFARQETQGPFDYGDTILTQAAGQELVSKAISVPLKTTQAAQMASFVVSSGSKNIDKSVEFLGLLNSDPELLNGLVLGVEGEAWEKVGDDRSKLLEGYQPNMHMAAWNTANNKILYADETITDKQIEARDKSIEDAIESPILGFVFNTETVKNEISNLNNVMSQYLDGLNTGTLDPTVAVPEMNKKLETAGFSKVQKEMQKQYDAFMAEAK
>NZ_CP023643.1|WP_029092052.1|62734_63652_-|carbohydrate-ABC-transporter-permease
MRKKKIQKVGVRSFGKKADIFFNVFLALFALSCVFPFLFVIIISLTSENSLVTNGYSLWPSEWSLDGYRYLADLKEQLLQSLFVTVMVTVVGTLINTTFTSTYAYAISRPDFILRKFFTIACLITMLFSAGMVPNYIVMTSMLGLKDTIWALILPMAISPFNIIVMRTFFKRTVPDAIIESARIDGASELRIFGQIVLPLAVPGIATISLFAALGFWNDWFNALLYIQSDNLVPLQYLLMKIQANIEYMTQNASMSTALSSGAQAIPKEATRMAMVVISTLPIALSYPFFQKYFVSGLTIGGVKE
>NZ_CP023643.1|WP_096699462.1|63672_64554_-|sugar-ABC-transporter-permease
MALPGFIWMIFFFYIPVLGNIVAFKDFRYSPDGFLASLKNSPWIGFDNFKFLFSSSDAYLITRNTLLYNIAFILIGLVCAILFAVVLSEIRSRKMIKIYQTSMLLPYFLSWVIIGYFVYAFLSPDKGLLNSMITSFGGEAINWYNEPKYWPFILIVLGVWKSVGYSSIIYFAAIMGINPTYYEAAMVDGATKWQQIRHVTLPQLIPLITILSILSVGNIFKADFGLFYQVTRNSGVLYEVTSVLDTYVYNGLANTGDIGMAAAAGLYQSVVGCVLLIAANAVVRKLDDSSALF
>NZ_CP023643.1|WP_069125464.1|64811_67016_-|glycoside-hydrolase-family-92-protein
MLHIEDLLQIDTRQGTNNQHTFSHGNCLPYTGVPFGMNHFVVQTADQRGSWYFNPHDRTFQGIRLTHQPSPWMGDFSQLLLAPTAGHVVKSDLFHHQSSYRTEEAVFSPFYLKVKQERYQITTEFSPTTYGGVLQSRYLKNSQPGLFIRSQGPSEIAVDVANKTVRGYITNASGSEDKDFKMYFTLRFDQAIDAATTGYYTDDALVPSTTYAGTDPIFDIRFPAAETLTTHLATSFLSQDQADLNLSRIENDSFDTIKQAAADKWLSYLNKIEIENRNKEQIKTFYACLYRTCLFPQKFYELDEANQPQHYNTLAKKVQPGYLYTNNGFWDTYKTVYPLYSLIAHEEYEEMLQGYLQSYREAGFLPKWLSPDERGMMPGTLIDAVIADAAVKGLATDLMPEFLEGMLAGATTKSASGNYGRRGTLDYLKYGYVPLDYHESVNHTLDYAYSDFCISQVARVLGKGDIQATYQKQSRNFLNIFDENTGFMRAKDKEGNFRHDFKHDRWGLDYAEGSTWQNGFATYHDFAALITAYGGERAFFDKLTTLCNTSPTYGVEGYGFEIHEMSEMAAVDFGQVALSNQPSFHLPYLFNYVGKPASTQVVVKQLMTELFNAGWDGFPGDEDNGSMSGWYIFSSLGFYPVCPGSGEYVLGIPLFDKATVHLANGKTLVVEAAGNQAHTNFVSEVALNETPHTALAIQHESLMAGGNLKFTMALAPVDREYSNAEKPFSLTTNH
>NZ_CP023643.1|WP_069120595.1|67019_68093_-|GntR-family-transcriptional-regulator
MKQPLYQQILNDLKADITAGTYLPEDKLPTELELSERYGVSRITSKRALVELENEGMIYRLRGKGSFVCAKDGLTEEKTVAKTDILFIMPFPHNAGLGDYTQGMLRCLEETSYRLQVQPHQYLSSTDVAEIVAQYAGIIYYPTNNSSDLELLYGLHLNALPTVLLDKEFESLPFSAVVADNQQGGFEATQHLIAQGHQQVAFVSTEHLGEVSSVRERYFGYMKALHAAGATQPIHLKKTGTEEVSVYLEQVTRQLLDQGITGVIAENDIIAIQLINTMKQMGYQVPADFAVVGFDNIQAASLLEPSLTTISQKFEEMGTIASQTLLAEISQPTQVKEKHIVPVELIVRKSSQIESGG
>NZ_CP023643.1|WP_069125466.1|68310_69600_+|glycoside-hydrolase-family-125-protein
MTYSTVPTSVQQFMDDMTKRAEAENPRWAEIFNKCFANTLLTTVKRFDDGSTFLLTGDIPAMWLRDSTAQVRPYLAIAKEDDDLQAMIAGLVKRQFRYINLDPYANAFNEEANNAGHQTDHTEMNPWIWERKYEIDSLCYPIQLAYLLYKETGRRDQFDASFESGITEILKVWETEQNHDQSPYTFERDTTRVEDTLTHDGRGTPVGPTGMTWSGFRPSDDVCKYGYLVPSNMFAVVVLSYLEEIYTDLLPQPDVVARVTKLKNEIDAGIKEYAQVANAAGETVFAFEVDGLGNHSIHDDSNVPSLMAAPYLGYCAQDDPIYLATRKTLLSSENPYYYEGKNAKGIGSSHTPENYIWPIALAIEGLTTSDKADKKRILDMLVDNDGGTNLMHEGFDVNDANNYTREWFSWANMMFCELLMDYYDIKITA
>NZ_CP023643.1|WP_069125467.1|69624_72330_+|alpha-mannosidase
MTTKKVYIISHSHWDREWYMAYEQHHMRLVALMDDLLHLFKTNPDFHSFHLDGQTIAIDDYLEVRPEKREEVQAAITAGKLKIGPFYILQDDFLISSESNTRNMLVGLEESRKWGDPVMLGYFPDTFGNMGQAPQMMKEGGIEAAAFGRGVKPTGFNNVVINDEKYTSQFSEMWWEGADKSKIFSLLFANWYSNGNEIPVEKEAAQAFWKEKLADAEQFTSTDHILMMNGVDHQPVQMDVTDAIKVANNLYDDYEFIHSSFDEYLEAVMNDVPADLSTVSGELTSQETDGWYTLANTASARIYLKQKNTDVQRQLENITEPLATMAFDVTGEYPHDQLRYAWKLLMQNHPHDSICGCSVDEVHREMITRYDKALEVGKFLASEAVESLTASIDTSLFPTDSKPFVVFNTAGSAKTGTIETEIEWKRLPFSQGVPEELYAQLKNETLPELTVIDAKGQPVTAEILSHEVRFNYDLPKDAFRVPFMAIYVKVRVVVTDMPAVSWESLALTVGQNTTSTLPTIVSEADNRLENEFLHVKVESNGQLTVTDKTTGITYPNVLTYENVGDIANEYIFKQPEGDQAIYAHDFPATTTVAINTTKIGEITLTQTLMIPVSADETLAEEMKAVVEMRQRKAQRSKELAPFTLTTKIRLEQGSRQLKFSTHFDNQMKDHRLRVLFPTNITTDKHYAESIFEVVERPNGVSASWENPTNPQHQHSFVNVQDATHGMTVSNYGLNEYEILADNTTIALTLHRSVGELGDWGYFPTPEAQCMGEQTVAFALAFHGADDQNRTFHDGQNFQIPFTVAQTSVHNGRWAPKAAYLTIDSSAYALTALKRKEHQTEIVTRGFNLSNTAAAPLEIKISGYTPSRCTLIETPHEKPLSAILEPAEINSLLWTKSASVND

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP023643_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023643_2

301386-301506

Orphan

Consensus_repeat	Method
TCCTCATGTTAGATGCTTTAAGAGTACGATTCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP023643_2

>merge|NZ_CP023643|2|301386-301506|CRISPRCasFinder
TCCTCATGTTAGATGCTTTAAGAGTACGATTCCATTTGTTAATGTCTTAAGAGTACCAATCCTTTTATTAATAACTTAAGAGTACCACTCCTCATGTTAGATGCTTTAAGAGTACCATTCC

>NZ_CP023643|2|2|301386-301506|CRISPRCasFinder
TCCTCATGTTAGATGCTTTAAGAGTACGATTCC	ATTTGTTAATGTCTTAAGAGTACCAATCCTTTTATTAATAACTTAAGAGTACCAC
TCCTCATGTTAGATGCTTTAAGAGTACCATTCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023643.1\|WP_029092241.1\|306365_307004_-\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	unknown	unknown	gnl\|CDD\|234649
NZ_CP023643.1\|WP_029092240.1\|304871_305798_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225543
NZ_CP023643.1\|WP_051457132.1\|305974_306307_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227871
NZ_CP023643.1\|WP_029092234.1\|299112_299322_+\|DUF1447-family-protein	unknown	unknown	gnl\|CDD\|377805
NZ_CP023643.1\|WP_069125265.1\|302997_304056_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NZ_CP023643.1\|WP_069118742.1\|307006_307801_-\|phosphotransferase-family-protein	unknown	unknown	gnl\|CDD\|223584
NZ_CP023643.1\|WP_029092235.1\|299328_301005_+\|ribonuclease-J	unknown	unknown	gnl\|CDD\|223668
NZ_CP023643.1\|WP_069125263.1\|309157_310564_-\|dipeptidase-PepV	unknown	unknown	gnl\|CDD\|235988
NZ_CP023643.1\|WP_069120461.1\|294601_295024_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP023643.1\|WP_069125266.1\|297825_298596_-\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|319819
NZ_CP023643.1\|WP_029092239.1\|304052_304772_-\|cell-wall-active-antibiotics-response-protein	unknown	unknown	gnl\|CDD\|227100
NZ_CP023643.1\|WP_069125269.1\|293960_294452_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226406
NZ_CP023643.1\|WP_029092231.1\|296349_297159_-\|glutamate-racemase	unknown	unknown	gnl\|CDD\|234851
NZ_CP023643.1\|WP_069125268.1\|297371_297839_+\|YslB-family-protein	unknown	unknown	gnl\|CDD\|378477
NZ_CP023643.1\|WP_029092237.1\|302372_303005_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP023643.1\|WP_069120463.1\|293252_293777_+\|YcxB-family-protein	unknown	unknown	unknown
NZ_CP023643.1\|WP_096879610.1\|295738_296347_-\|XTP/dITP-diphosphatase	unknown	unknown	gnl\|CDD\|184835
NZ_CP023643.1\|WP_029092229.1\|295102_295612_-\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|223695
NZ_CP023643.1\|WP_069118743.1\|308278_309130_-\|D-amino-acid-transaminase	unknown	unknown	gnl\|CDD\|130191
NZ_CP023643.1\|WP_036027605.1\|301680_302358_-\|TrkA-family-potassium-uptake-protein	unknown	unknown	gnl\|CDD\|223643

Protein	Function_ID	Function_description	E-value
NZ_CP023643.1\|WP_029092240.1\|304871_305798_-\|hypothetical-protein	gnl\|CDD\|225543	COG2996, COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only].	3.06786e-107
NZ_CP023643.1\|WP_051457132.1\|305974_306307_+\|hypothetical-protein	gnl\|CDD\|227871	COG5584, COG5584, Predicted small secreted protein [Function unknown].	4.38138e-17
NZ_CP023643.1\|WP_029092234.1\|299112_299322_+\|DUF1447-family-protein	gnl\|CDD\|377805	pfam07288, DUF1447, Protein of unknown function (DUF1447). This family consists of several bacterial proteins of around 70 residues in length. The function of this family is unknown.	5.40341e-23
NZ_CP023643.1\|WP_069125265.1\|302997_304056_-\|sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	2.36336e-61
NZ_CP023643.1\|WP_069118742.1\|307006_307801_-\|phosphotransferase-family-protein	gnl\|CDD\|223584	COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme transport and metabolism].	2.45942e-48
NZ_CP023643.1\|WP_029092235.1\|299328_301005_+\|ribonuclease-J	gnl\|CDD\|223668	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair].	0
NZ_CP023643.1\|WP_069125263.1\|309157_310564_-\|dipeptidase-PepV	gnl\|CDD\|235988	PRK07318, PRK07318, dipeptidase PepV; Reviewed.	0
NZ_CP023643.1\|WP_069120461.1\|294601_295024_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.28978e-13
NZ_CP023643.1\|WP_069125266.1\|297825_298596_-\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|319819	cd07517, HAD_HPP, phosphatase, similar to Bacteroides thetaiotaomicron VPI-5482 BT4131 hexose phosphate phosphatase; belongs to the haloacid dehalogenase-like superfamily. Bacteroides thetaiotaomicron VPI-5482 BT4131 is a phosphatase with preference for hexose phosphates. In addition this family includes uncharacterized Bacillus subtilis YkrA, a putative phosphatase and uncharacterized Streptococcus pyogenes MGAS10394 a putative bifunctional phosphatase/peptidyl-prolyl cis-trans isomerase. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.97425e-89
NZ_CP023643.1\|WP_029092239.1\|304052_304772_-\|cell-wall-active-antibiotics-response-protein	gnl\|CDD\|227100	COG4758, COG4758, Predicted membrane protein [Function unknown].	2.94395e-37
NZ_CP023643.1\|WP_069125269.1\|293960_294452_+\|hypothetical-protein	gnl\|CDD\|226406	COG3889, COG3889, Predicted solute binding protein [General function prediction only].	1.61479e-05
NZ_CP023643.1\|WP_029092231.1\|296349_297159_-\|glutamate-racemase	gnl\|CDD\|234851	PRK00865, PRK00865, glutamate racemase; Provisional.	7.96054e-123
NZ_CP023643.1\|WP_069125268.1\|297371_297839_+\|YslB-family-protein	gnl\|CDD\|378477	pfam10702, DUF2507, Protein of unknown function (DUF2507). This family is conserved in Firmicutes. The function is not known.	4.83503e-52
NZ_CP023643.1\|WP_029092237.1\|302372_303005_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	7.91106e-80
NZ_CP023643.1\|WP_029092241.1\|306365_307004_-\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	gnl\|CDD\|234649	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.	2.75449e-88
NZ_CP023643.1\|WP_096879610.1\|295738_296347_-\|XTP/dITP-diphosphatase	gnl\|CDD\|184835	PRK14822, PRK14822, XTP/dITP diphosphatase.	7.07372e-106
NZ_CP023643.1\|WP_029092229.1\|295102_295612_-\|metallophosphoesterase	gnl\|CDD\|223695	COG0622, COG0622, Predicted phosphoesterase [General function prediction only].	1.34404e-45
NZ_CP023643.1\|WP_069118743.1\|308278_309130_-\|D-amino-acid-transaminase	gnl\|CDD\|130191	TIGR01121, D-alanine_aminotransferase, D-amino acid aminotransferase. This enzyme is a homodimer. The pyridoxal phosphate attachment site is the Lys at position 146 of the seed alignment, in the motif Cys-Asp-Ile-Lys-Ser-Leu-Asn. Specificity is broad for various D-amino acids, and differs among members of the family; the family is designated equivalog, but with this caveat attached. [Energy metabolism, Amino acids and amines].	3.85621e-127
NZ_CP023643.1\|WP_036027605.1\|301680_302358_-\|TrkA-family-potassium-uptake-protein	gnl\|CDD\|223643	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism].	3.86481e-60

>NZ_CP023643.1|WP_029092235.1|299328_301005_+|ribonuclease-J
MKLVKNNETAVFALGGLGEIGKNMYCVQFQDEIIVIDAGIKFPEDDLLGIDYVIPDYTYLIENADKVKGVFITHGHEDHIGGIPFLLKQVNLPIYATKLALGLIRNKLEEHGLLRTAELIEFNEDDVFKFRKTSVSFYRTTHSIPDAFGVVVKTPSGNIVETGDFKFDFTPVGQPANITKMAELGKEGVLCLLADSTNATVPQFTMSEKIVGDSIKDIFETVDGRIIFATFASNMHRVQQVVEAAIEKGRKIAVFGRSMESALEIGQELGYIAAPKNTFIDAHQIKRLPANQVCILCTGSQGEPMAALSRIANGTHRQIQIQPGDTVVFSSSPIPGNTVGINKTINRLYQAGADVIHGKLNNIHTSGHGGMEEQKLMLRLMKPKYFMPVHGEYRMLKSHQQTAINCDVPADNTFVLGNGDVLALTADSARIAGRVPSGTIYVDGKGIGDIGSIVLRDRRILSEDGIVLVVTTVDFENQRVMSGPDIISRGFVYMRESGSLINDAQALITRRLQKAMNSDKEVTRHDIKSLVIDTLNPYFYDKTKRRPMLLPVIMEYDK
>NZ_CP023643.1|WP_029092234.1|299112_299322_+|DUF1447-family-protein
MIYKVFYQENMIETPLRENTKSLMIEASSIEDVRKKLTNHGYNIEFIEMMRDAQIAFEKNDPDFKLEEI
>NZ_CP023643.1|WP_069125266.1|297825_298596_-|Cof-type-HAD-IIB-family-hydrolase
MTKIVFFDVDGTLYNTQNKIPESTKESIALLQSKGIKVALATGRSPFTVTEICDELNVDTIVCYNGQYVTHKGEIVYTNPMPMAELAQLKELTKAKNHALVFASHHMIAFDEPNNEVVKKALNSVNISYPEVVSDFTTDNEIYQMMLFADDSHDMSYNAAFENYRFVRWHDQSMDVIPANGSKADGIKALLSELNIAIENAYAFGDGMNDYEMLQAVGCGVAMGNGKEALKKVADYITDHVDEDGIMKGLKHLNLI
>NZ_CP023643.1|WP_069125268.1|297371_297839_+|YslB-family-protein
MTESNTTPSSTLGYELMRHFVLPDLLGHEASGLLYLLGKNLGRKFTMSSIPELQIFFNEAGWGTLTVEKEKKDTCHFILSGDPVEKAFALNTEHSFNLEAGFLAANFASQTGFYTEATEEINHKKSTVILIVKWDRKEYDANASIDSTEEDSISN
>NZ_CP023643.1|WP_029092231.1|296349_297159_-|glutamate-racemase
MNQPIGVIDSGVGGLTVAQEILRQLPNENICYLGDTLRCPYGPRDTEQVKEFTMDMTNYLLEHDIKLLVIACNTATAAALQYIREHVAIPVVGVIQPGARAALKATKNNQIGVIGTEGTIKSQAYNSALDLLDHTIKVQTLACPKFAPVVESSEYKGSVAKKIVAQTLRPFKNSGVDTFVLGCTHYPLLQPIIENVLGSSVKVINPGLETASEVSMLLDYFSLRNVSGEKNQHRFFTTGSTKIFGGIARDWLDVPNLEVEYVKIGQGRF
>NZ_CP023643.1|WP_096879610.1|295738_296347_-|XTP/dITP-diphosphatase
MKKLLIATHNEGKALEFKALFEDYGVVIETLNDYPELPEIEETGTTFRENAALKAEAIDKLTNQAVISDDSGLSVVALNGAPGVYSARYAGEPANDANNNEKLVKALEKFSREERAARFDCTIAVAVPNEETRFYEGSIEGEILLEPRGSAGFGYDPYFLVPQLSKTTAELTMSEKNIISHRGKAIQKMAKDLPQLLLSLSK
>NZ_CP023643.1|WP_029092229.1|295102_295612_-|metallophosphoesterase
MKVLVVSDNHGNREALLHLKEMYTGKVDAFFHCGDSELEADDIAVEGYNIVRGNCDFGRIYPTEWFGEVDNHKILVTHGHLFNIKMNLVILRDRAKSRKAEYVFFGHTHELGCEYNAGILYLNPGSISLPRGRFEKTYALVEDTGTEIIVTFLDDSDKVLTDLTQIFKK
>NZ_CP023643.1|WP_069120461.1|294601_295024_-|MarR-family-transcriptional-regulator
MNQKNIELIYTINHYTTALMKIWSDEFPHRISISALLVLGELRDKGPQKQSDMAHFLNVTPGAMTNIATIIVRENYAERIYDKNDRRITRLAITAAGEIALKEASELDTRVNTDVLGELTEAEKVQFLELFNKLNRKIHL
>NZ_CP023643.1|WP_069125269.1|293960_294452_+|hypothetical-protein
MIVTLILIGLTLFAIGFLFIVIRFFNHKPKRKFIITALVGFLLVAIGVFLTPGTETDKPTESKKTTESSSTTHSSNIDSTSNSQTTSTVPIQSSTTTSTTTENSLSPTSSSSNTNTTPDTADTVTSTSIETTTESSTSTTESSSSTNEQIENATTDSTPEGTE
>NZ_CP023643.1|WP_069120463.1|293252_293777_+|YcxB-family-protein
MTEHFDITTHTLIAYQDQKLRNSKIFLAFRWIYSLLLTLVVTMLAFLYDVNLVVIGWLALGLFLVFTFIFCFTPLFAMVLTGISRKMTKVERFPVTIALTKEGLTQTINDRVLFINWSDFKRIYNDDEYFFLATKNDVCPLPLSSTENTKRLIYQNIKANAPKCKGIEKLKISK
>NZ_CP023643.1|WP_036027605.1|301680_302358_-|TrkA-family-potassium-uptake-protein
MVKYREEDENYAVIGLGRFGGSICETLIDLGKEVLAIDINEERVNVYANIATHAVIGNSMDENVLNNLGIRNFDHVVVAIGEDVEASILITLLLKEMGVKHVTVKAQNESHGKVLSKIGADRIVFPERDMGRRIAHYIASRNVIDYLELSHEYSLVELSVANPRFKERTLIDLRVRSEYGLNVVAIRRAGVMIVNPEPTEYIKVNDTLMVIGADTDIERLKEKLD
>NZ_CP023643.1|WP_029092237.1|302372_303005_-|response-regulator-transcription-factor
MISVMLVDDHEMVRMGVSAYLAVQSDIEVVGEAENGKIGVAKALALKPDIILMDLVMDEMDGIEATREIMSAWPEAKIIIVTSFIDDEKVYPALEAGAKSYLLKTSAAREIANAIRMTYKGDSVLEPEVTGKMMKRLTRVQETPLHEELTKREKEILLLITKGKSNQEIADELFITLKTVKTHVSNILSKLNVQDRTQAVIYAFKHQLVE
>NZ_CP023643.1|WP_069125265.1|302997_304056_-|sensor-histidine-kinase
MSLFKGGIIIGLLAMVGMTLGTLITLIATTSLTLNQVFWKQAYFGLPLGVLLIVVAVVIGVVIGGVVATNIRKQLDNVERQIRVANPLVENKETERKSDFKEIQWIQRSITELQERYQRQVLASQQLSEQSEGGLSAKTKEEILMNERQRLARELHDSVSQQLFAATMMLSAVNETVDDSTLPPMIAKQLEMIEKTINESQSEMRALLLHLRPVLLEGKSLQQGIEGLLRELQSKLPLEMTWKIEPIAFQPALENHLFRVVQELISNTMRHAKANHLSVYFGQVKNVAILRVVDDGKGFEVKDFNANPGSYGLQNVHERINEIGGTLKIISFPNKGTSVEIKIPIVEGDSID
>NZ_CP023643.1|WP_029092239.1|304052_304772_-|cell-wall-active-antibiotics-response-protein
MKGKRQLYARLLMIFMLATVVELLFQRSLFILLIVGFSLVFLMHRRNKLNHTRQRSFLFWAGVVCIILAIGGTISFRIGVLIVLIVFIRHLLKMKRTADLISVQIKEAEAIHKDTVVSKNKIIGEYHFGESPFEWNDINIQFGIGDVIIDLGNTVLPPGENTAIIRGLVGDMRIVVPVDVGVALDYSAFSGQLNYPESDAVKTLRQETLVHYSENYHEATYKIKLVVSVIVGELEVMHV
>NZ_CP023643.1|WP_029092240.1|304871_305798_-|hypothetical-protein
MENYGQTKYLGTTLKVVVKNMDEKNIFVADGYEDVYKLPREYLKEDQTVELEEELEVFILNDQDQSVVATTIIPKVQIGRYSWGEVVAVRRDLGVFVNIGLPKDIVVSMDDMPPLKQIWPKKGDRLLLSLRVDQKDRLWGVLATEEVIKTTIKKAAPELKNTDISGTIYRLIRSGSFLITDEAYLAFVHETERDIEPRLGEYVNGRVVAVRPDGSLNISLRKRAHEALGEDAGMIEAYLVRMDGEMPYTDKSSPDEIKAKFGISKAQFKRALGQLMKGRKITQADGWTKLVAPVSETETEVTTEDEGE
>NZ_CP023643.1|WP_051457132.1|305974_306307_+|hypothetical-protein
MTGVSYKMKQNNFIPGVITGLVLGHLAYHYVIEPRKRIDPELVLNSLKAQLKNTHPIKNSWISYTPENFKHHGVITEVYRGGLADDLFTDRYEFVAESKSGTLIDLYKVI
>NZ_CP023643.1|WP_029092241.1|306365_307004_-|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB
MRLRNKPWAQEKLESHPEHVIMKPEEMKGKWSQLFGNDQPIHIEIGTGKGQFITGMAELHPDINYLGIEIQKSVMIDVLDKIIDKKLTNIKLLPTDGALVSEFFEKGEIDQVYLNFSDPWPKKRHEKRRLTSAPFLTSYKDVLETGKEIHFKTDNRGLFEYSLISFTNFGLSLEYLSLDLHQSEMEGNVQTEYEQKFSAKGQPIYRCEVQFK
>NZ_CP023643.1|WP_069118742.1|307006_307801_-|phosphotransferase-family-protein
MTNYLGRQWDDLQPAGGESGQAYFATNHEGKFFLKRNSTPFLAVLSAEGFVPRLKWTQRLENGDVITAQKWANGHLFTHEEMTSPRVIDMMQRIHTSRALNILLKKIDAHVMYPNDWLTHVKTDMADVLSLHPQIKQALRYLESNQTLVASAMTAVVCHGDVNHNNWLLSDEDELFLVDWDGAVLSDVSVDLSMLLYRYIPKENWSNWLETYGMSMTPLLQVKLKWYMLCNVILTIKTKHNSGRLNEMNKWLIKLEKVLNDEEL
>NZ_CP023643.1|WP_069118743.1|308278_309130_-|D-amino-acid-transaminase
MKVLVKDQIINSADANVSISDRGYQFGDGIYEVIRVLNGKLFTEKEHMDRFYSSAEKMDLVMPYDREKLTTLIYDLIKANNVVDGHVYFQLTRGVQEPRNHAFPDNVEAVLTGHTKIYKRDLAMLEEGVSTVTADDVRWLRCDIKTLNLIGNCMAKTKAAKVGAEEAILHRDGLVTECSASTLLIVKDGVVKTHPLTNLVLPGITRMVIMDAIADANIPVKEEAFMLDELFQADEAILASTGHDATPIIEIDGKPVGNGKRGPITAEIQRRYDLRIEQECGKA
>NZ_CP023643.1|WP_069125263.1|309157_310564_-|dipeptidase-PepV
MTNVNWKHEVESRQDAMLEDLKDLLRIRSVRDDAKAVAGAPFGPGPKEALDFMMAMGQKDGFETKVVEDVAGHIEFGQGEEIVGILGHVDVVPEGDGWDSAPYEPEMRDGKLFARGVSDDKGPTIAAYYGMKIIKELGLPVSKRIRLFIGSDEESGMSCLKTYLEKEEMPTIAFAPDAEFPIINTEKGISSVDVSFENKVLAEKCEFELAEFISGERYNMVAADAKATLNKVGDTAAMVASFNKYIEDNNVEGNIVAENDTVKIQVIGKSAHAMEPRNGVNAGLALLEFLSGYDIAGSANDFVSFAMKYLYEDSRAEHFGIAAEDESGDLTMNVGLLSFNKDGGKFGLNFRYPYTFDMTEAKNTIAEKALAFNGKITLFEDEKPSHVDGDSFLVSTLAKVYEKQTGAKSELLSIGGGTYARYLKEAVAFGAAFPGAADTMHQKNEYSVWEDLVRASVIYAEAIYELAK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP023643_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023643_3

485367-485486

Orphan

Consensus_repeat	Method
TCATCGTTGCAAATTTATTTGCTTACGAGGATAGTATGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP023643_3

>merge|NZ_CP023643|3|485367-485486|CRISPRCasFinder
TCATCGTTGCAAATTTATTTGCTTACGAGGATAGTATGGGACGGAAATTTCGCCAGAAATTGAGTACCAATCCTTCGCTTTCATCGTTGCAAATTTATTTGCTTACGAGGATAGTATGGG

>NZ_CP023643|3|3|485367-485486|CRISPRCasFinder
TCATCGTTGCAAATTTATTTGCTTACGAGGATAGTATGGG	ACGGAAATTTCGCCAGAAATTGAGTACCAATCCTTCGCTT
TCATCGTTGCAAATTTATTTGCTTACGAGGATAGTATGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023643.1\|WP_029092404.1\|493748_494792_-\|phenylalanine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|234780
NZ_CP023643.1\|WP_069125683.1\|491327_493736_-\|phenylalanine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234804
NZ_CP023643.1\|WP_029092396.1\|484373_485360_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023643.1\|WP_069125677.1\|478097_479261_-\|acetylornithine-transaminase	unknown	unknown	gnl\|CDD\|179505
NZ_CP023643.1\|WP_069125674.1\|475102_476269_-\|rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|274033
NZ_CP023643.1\|WP_069118550.1\|482428_484201_-\|excinuclease-ABC-subunit-UvrC	unknown	unknown	gnl\|CDD\|234792
NZ_CP023643.1\|WP_029092400.1\|487525_489880_-\|endonuclease-MutS2	unknown	unknown	gnl\|CDD\|234750
NZ_CP023643.1\|WP_069125680.1\|485755_486304_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023643.1\|WP_029092392.1\|479261_480011_-\|acetylglutamate-kinase	unknown	unknown	gnl\|CDD\|234869
NZ_CP023643.1\|WP_029092387.1\|473879_474584_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	unknown	unknown	gnl\|CDD\|274750
NZ_CP023643.1\|WP_029092399.1\|487086_487404_-\|thioredoxin	unknown	unknown	gnl\|CDD\|200072
NZ_CP023643.1\|WP_069125679.1\|481243_482269_-\|N-acetyl-gamma-glutamyl-phosphate-reductase	unknown	unknown	gnl\|CDD\|234761
NZ_CP023643.1\|WP_036027713.1\|486322_486790_-\|matrixin-family-metalloprotease	unknown	unknown	gnl\|CDD\|239796
NZ_CP023643.1\|WP_029092405.1\|495117_495459_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NZ_CP023643.1\|WP_029092401.1\|489904_490432_-\|CvpA-family-protein	unknown	unknown	gnl\|CDD\|367140
NZ_CP023643.1\|WP_069125676.1\|476520_477732_-\|aspartate-kinase	unknown	unknown	gnl\|CDD\|235843
NZ_CP023643.1\|WP_029092388.1\|474577_475033_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	unknown	unknown	gnl\|CDD\|376771
NZ_CP023643.1\|WP_069118544.1\|495553_496018_-\|dUTP-diphosphatase	unknown	unknown	gnl\|CDD\|223827
NZ_CP023643.1\|WP_069118553.1\|480025_481228_-\|bifunctional-glutamate-N-acetyltransferase/amino-acid-acetyltransferase-ArgJ	unknown	unknown	gnl\|CDD\|239065
NZ_CP023643.1\|WP_069125682.1\|490649_491252_+\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|380317

Protein	Function_ID	Function_description	E-value
NZ_CP023643.1\|WP_069125683.1\|491327_493736_-\|phenylalanine--tRNA-ligase-subunit-beta	gnl\|CDD\|234804	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed.	0
NZ_CP023643.1\|WP_069125677.1\|478097_479261_-\|acetylornithine-transaminase	gnl\|CDD\|179505	PRK02936, argD, acetylornithine transaminase.	0
NZ_CP023643.1\|WP_069125674.1\|475102_476269_-\|rod-shape-determining-protein-RodA	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	6.17594e-99
NZ_CP023643.1\|WP_069118550.1\|482428_484201_-\|excinuclease-ABC-subunit-UvrC	gnl\|CDD\|234792	PRK00558, uvrC, excinuclease ABC subunit UvrC.	0
NZ_CP023643.1\|WP_029092400.1\|487525_489880_-\|endonuclease-MutS2	gnl\|CDD\|234750	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed.	0
NZ_CP023643.1\|WP_029092404.1\|493748_494792_-\|phenylalanine--tRNA-ligase-subunit-alpha	gnl\|CDD\|234780	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated.	0
NZ_CP023643.1\|WP_029092392.1\|479261_480011_-\|acetylglutamate-kinase	gnl\|CDD\|234869	PRK00942, PRK00942, acetylglutamate kinase; Provisional.	1.48591e-95
NZ_CP023643.1\|WP_029092387.1\|473879_474584_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	gnl\|CDD\|274750	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ. This family describes a protein family, YeaZ, now associated with the threonylcarbamoyl adenosine (t6A) tRNA modification. Members of this family may occur as fusions with ygjD (previously gcp) or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI. [Protein synthesis, tRNA and rRNA base modification].	5.72677e-57
NZ_CP023643.1\|WP_029092399.1\|487086_487404_-\|thioredoxin	gnl\|CDD\|200072	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin. [Energy metabolism, Electron transport].	2.91259e-43
NZ_CP023643.1\|WP_069125679.1\|481243_482269_-\|N-acetyl-gamma-glutamyl-phosphate-reductase	gnl\|CDD\|234761	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated.	5.14891e-164
NZ_CP023643.1\|WP_036027713.1\|486322_486790_-\|matrixin-family-metalloprotease	gnl\|CDD\|239796	cd04268, ZnMc_MMP_like, Zinc-dependent metalloprotease, MMP_like subfamily. This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases.	1.40059e-07
NZ_CP023643.1\|WP_029092405.1\|495117_495459_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	3.94239e-32
NZ_CP023643.1\|WP_029092401.1\|489904_490432_-\|CvpA-family-protein	gnl\|CDD\|367140	pfam02674, Colicin_V, Colicin V production protein. Colicin V production protein is required in E. Coli for colicin V production from plasmid pColV-K30. This protein is coded for in the purF operon.	6.24069e-16
NZ_CP023643.1\|WP_069125676.1\|476520_477732_-\|aspartate-kinase	gnl\|CDD\|235843	PRK06635, PRK06635, aspartate kinase; Reviewed.	0
NZ_CP023643.1\|WP_029092388.1\|474577_475033_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	gnl\|CDD\|376771	pfam02367, TsaE, Threonylcarbamoyl adenosine biosynthesis protein TsaE. This family of proteins is involved in the synthesis of threonylcarbamoyl adenosine (t(6)A).	2.79634e-57
NZ_CP023643.1\|WP_069118544.1\|495553_496018_-\|dUTP-diphosphatase	gnl\|CDD\|223827	COG0756, Dut, dUTPase [Nucleotide transport and metabolism].	2.02861e-40
NZ_CP023643.1\|WP_069118553.1\|480025_481228_-\|bifunctional-glutamate-N-acetyltransferase/amino-acid-acetyltransferase-ArgJ	gnl\|CDD\|239065	cd02152, OAT, Ornithine acetyltransferase (OAT) family; also referred to as ArgJ. OAT catalyzes the first and fifth steps in arginine biosynthesis, coupling acetylation of glutamate with deacetylation of N-acetylornithine, which allows recycling of the acetyl group in the arginine biosynthetic pathway. Members of this family may experience feedback inhibition by L-arginine. The active enzyme is a heterotetramer of two alpha and two beta chains, where the alpha and beta chains are the result of autocatalytic cleavage. OATs found in the clavulanic acid biosynthesis gene cluster catalyze the fifth step only, and may utilize acetyl acceptors other than glutamate.	0
NZ_CP023643.1\|WP_069125682.1\|490649_491252_+\|nitroreductase-family-protein	gnl\|CDD\|380317	cd02140, Frm2-like, nitroreductase family protein. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.	9.63598e-98

>NZ_CP023643.1|WP_029092396.1|484373_485360_+|hypothetical-protein
MNDILSFQTNAPVDRQLVWRSICETYIQHYLEQDDDFLTYSDYLEPFSDETLNSLLSTLLASYFSEHAMGKIIYEQIVSGLKIPEYQIERVAHWFDDSVISLFDVLEQTPENNWLIYNHLDTNEYLVNHRTLNGLSLYNDKQLDQLFHMTLVREKNYYYALENTITLGTAEERLIFSLLNAAPHTGLNPALTKQQQLFFNLTFTLDFHLENDSDDIKSFIDNGLLKYEALLLLENEFQHYSSDEEQHVARHLLGEVFQQMTTSSELKNANINSLAAAVTYLLQQEPFLFGAHETQNQVAQRYNVSISTIRKWYRFLKNELSPFIDSYQ
>NZ_CP023643.1|WP_069118550.1|482428_484201_-|excinuclease-ABC-subunit-UvrC
MNELIKHKLEFLPDLPGCYLMKDSNGTIIYVGKAKILKNRVRSYFTGTHNGKTQRLVADIVDFEYIVTQSNVEALLLEINLIKKHDPKYNIMLKDDKTYPYIKITNERHPRLVITRKILNDKGKYFGPYPNVSAANETKKILDKLYPLRKCKAIPGRPCLYYHLGQCLGPCVNTVSTATYNDMIVKIAKFLNGGHQAVVKQLQTKMAAAAETLDFEKAAEYRDQVESIEMTIQKQTMTSNDFTDRDVFGYAVDKGWMCVQVFFVRQGKLIERDVSLFPIYDEAADEFTSYIAQFYKRANHLLPQEIFLPDSVENELIEELLEVPCLVPRRGKKKDLTVLAHENASIALKQKFSLIARNDERTIGAVEELGEAMSIPTPRLIEAFDNSNIQGTDPVSAMVCFEDGRPSRSKYRKYKVKTVDGPDDYATMREVVRRRYWRVLKEQLPMPDLILIDGGKGQVDVAKDVLQNELGIDVPVAGMAKDDKHNTSYLVFGDPLDAMYLNPRSESFYLLQRIQDEVHRFAITFHRKLHSKNSFSSKLDGIEGIGPKRKQKLLKHFGSIQKMKEAPNEEFTKIGIPQAAVERLKIQLNQ
>NZ_CP023643.1|WP_069125679.1|481243_482269_-|N-acetyl-gamma-glutamyl-phosphate-reductase
MKVAIVGATGYGGLELIRLISQHPQLTLNSLHSLRGDNELLSTIYPLVQQTPYDLAVEPFEPVKISKEADVVFFATPAGIAKDLIPQLDLKKIQVIDLSGDLRLEKREDYEKWYQNEAASQELINQAVYGLSEWHHDKLQGAMLISNPGCYATAILLGLTPLYEKLDIPSVIIDAKSGVSGAGKALSEATHFMQTHDNLQPYKMNAHQHLPEIEQQLGWVNEAVDPLTMTTQLLPIARGLMAVMYVTTTLSTSAIKKIYQDRYATDPFIRLSGEKIPTIQQVIGSNYCDIGWHKDERTGRLTVVTVIDNLLKGAAGQAVQNLNISQGWDETLGLPIVPMFT
>NZ_CP023643.1|WP_069118553.1|480025_481228_-|bifunctional-glutamate-N-acetyltransferase/amino-acid-acetyltransferase-ArgJ
MNLVHEGHIATPKGFYADGLHAGLKRMKKDIGLIYSEVPAQTAAVYTQNSFKGAPITVTQDSLASSAETQVLIVNSGNANTCTGKQGLADAYAMRLATAKKINVPEEYVTVASTGVIGVPLNMPLVLDGIAQLDEQLSNGKGFQEAILTTDKTIKDVCITIQLDGQRVTIAGAAKGSGMINPNMATLLGFITTDAAIEGAYLDKLLRQTIEASFNQITIDGDTSTNDMVLVMANGMAGNKPISAHHPEMTLFKEALLYVCTVLSKKVAEDGEGATKLIEVTVNGALHKEEARLIAKTVVGSNLVKAAFFGEDGNWGRIIDAVGYSGVPVNPDTVDISISDVAVLVQSEPVEVDEAAVLSPVLQQKEVSVVIDLHLGTETGTAWGCDLSYDYVKINAAYRT
>NZ_CP023643.1|WP_029092392.1|479261_480011_-|acetylglutamate-kinase
MSGTIVIKLGGNALEKIEPAFFEQIKDWQNAGKRLVFVHGGGPQIDELLTKLHVDIEKKNGLRVTSREVLDVATMVLAGKINTQMVLKFAAKGFQSIGLNGSDNLLLRVTPVQDKALGYVGTVDRVNANFLNMLLDQGLTPVIAPLGVDANFQLYNVNADIAACHIAGALQAEKLILLTDVPGVFAHQRVIQESVPQMMTDYIDRGIIIGGMIPKVKGAVTAVNRGVKSVHITDKLHLSGTAITKKAVI
>NZ_CP023643.1|WP_069125677.1|478097_479261_-|acetylornithine-transaminase
MAALMGNYSRIPLAIESAEGAYVTDEMSKQYLDFTSGIAVCNLGHRHPAVELAVTEQLKKVWHMSNLFENRLQETVAEAIVQHLEEGQVFFCNSGAEANEAAIKLARKKTGKTTIFTFQHSFHGRTVAAMTATAQAKIHDGFGPLPTGFTYLPYNDSAALKAAIEKDEDVAAVMLELIQGEGGVHVAEQSFIDEVIATCQAHNILVIVDEVQTGFGRTGQLFASQKYSFVPDIMTLAKGIANGIPAGALYAKTAVAQAFTPGSHGSTFGGNYLAMAASEAVINTMTAEGFLAQVDATSINLVSELQLLTEKFPFFKTVRGQGLLIGIECDSAVADFITACRKEGLLVLSAGTNVLRLLPPLTITTVELNKAIAILTKVLKNKDTIEG
>NZ_CP023643.1|WP_069125676.1|476520_477732_-|aspartate-kinase
MGKVVLKFGGTSVGDVAKIKATAEQAIREKEKGHEVVVVVSAMGKSTDHLVNLAEQINPKAPSREMDMLLSTGEQVTIALLAMAIEHEGHAAISYTGWQAGLVTEEIHGNARIQNILTTNVGKALDEGKIVVVAGFQGLSENGEITTLGRGGSDTTAVALAAALGAEKCSICTDVVGVYTSDPRYISEARKLAEIDYDEMLELANLGAGVLHPRAVEYAKNFNIPLEVRGAHVVEVGTMIKEGNLLETKQVVRGVAFDDKIARIRVSFKSVDKMNVACIFTKLAEEHVNVDIIVQSIGEEAGPSAVSFSLKEADLEEALRVLEQNKAAIGYHDLVTESGLAKVSIVGSGMVSNPGVAAQMFTVLRNAGISVRMISTSEIKVSVVVPEVKMLEAAEVCHQTFDV
>NZ_CP023643.1|WP_069125674.1|475102_476269_-|rod-shape-determining-protein-RodA
MTEKNIKSEAGILSANIAVIVTFLYLISVAMIFLVTGDKKLVILQTIWYLLGVMVVILMRFISISYFEKYAVWLYGLGILMLAVVLIFGKEVNGAKRWLDLGVVSLQTSEFMKIFFILYLAKIIAHHREKKQQGQELLLFVKVFLVLIVPLVFIFKQPDLGTAIVFLLITCGMLFIGGLSKKIIAVAVISGSAIMGGLTYLIIFQRQILLNIGMKNYQFQRIDTWIDGSAVDADSAYNVEQAVLAVGSGGYVGNGMDPQVYVPERHTDFIFSMIGETTGLIGSAILIILYFFLMYYFIRTCFLTKTLYHTYVITGILIMMSYHMFQNIAMNIGLMPVTGIPLPFISYGGSAILANMLSIAIILSIQHQHYSSVFGSDPSFEKKEALTN
>NZ_CP023643.1|WP_029092388.1|474577_475033_-|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE
MKTIKLASLEETERLGESIGRRLQANDCVLLEGDLGAGKTTLTKAIAIGLDIKAMVKSPTFTIIREYEGRLPLYHMDAYRLEHAEDDLGFEEYFNKDGVVVIEWAHYIAPFLPAHFLRLSLKHIAETTREITLEAEGTHYQALIEEVLAEW
>NZ_CP023643.1|WP_029092387.1|473879_474584_-|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB
MVTLAIDSSNKAMAIGLVDGNEIKGELALNVQQNHSIQLMPAIQYLMKASHVTPKDVTAIAVAQGPGSYTGLRIGVTVAKTMAWDLNIPLYGISSLKVLAANITCFDGVIVSLLDARRNAVYIGAYRRSDVSAPLETVIEDTYLPMEELVVQLKALDEPVIVVGSHADILLYKTQFEEALSQCVFVEATDGIPSGARLALLSQFEEAQEPHTFVPSYIRMTEAETNWRKAQGLD
>NZ_CP023643.1|WP_069125680.1|485755_486304_-|hypothetical-protein
MEPQSKMKSKFIYVLAIVINVLFLAGCQTTVLDQGDLPIEPLHAVYAIDMADEQAVVKQADYVFVAKVKTRGEVEYDEENFPSTVYQVDILHNLKGKLKREEKIIKSGGISREGDKLMLFEHDRLPQKEKLYLFIAYKQTDGGVLVSGANSTLAIEASTNATIKDDKTYQLYDKAVRKTGIH
>NZ_CP023643.1|WP_036027713.1|486322_486790_-|matrixin-family-metalloprotease
MVLMSIILVAPQNASAAKVKLISWNLVNKKKQLNWDGKTSYQKEFNFGVGVWNKYKKGVIRKKTAKVTADARLSDYSKKEPIVAVTSSRGTMKFNRYNMKKLTLNQRRNVMIHELGHALGLAHNTKDDVIFSYVTSRITLSGNDKASYNAAYRKY
>NZ_CP023643.1|WP_029092399.1|487086_487404_-|thioredoxin
MSNVYEVSDATFVEETKEGLVLVDFWAPWCGPCRMVAPVLDEISEELGDKVKIVKVNVDDNPDTSKEFGIMSIPTLLVKQNNEVKETIIGYRPKEELDEVIAKYL
>NZ_CP023643.1|WP_029092400.1|487525_489880_-|endonuclease-MutS2
MNKKVEVVLEFEKIKQSLIEQVVSSLGEKYIRTLKPATDIETVQERLAQTDEAAKVLRLRGEAPLAGIHDVGMALKRLEIGADLNGTELYQVARNLQVARLFKQFIMQFEAGGIDMPALTALAETLVPLEDIEKQVLDAIDETGYVTDSASLDLRAIRGALVRSEGNVREKLEGIVRSKSASKMLSDSIITIRNDRYVIPVKIEYKSQFGGIVHDQSASGQTLFIEPQAVVELNNERRELQVKERHEVARILKELSAAVEPYSADISENTKQLGFFDFTFAKARLGKNMSAVTPIMNDELRVNLIQARHPLINPDDIVPNDIYVGGDFNALIITGPNTGGKTITLKTLGLLAMMAQSGLQIPAEVNSELPIYSRIFADIGDEQSIEQSLSTFSSHMTNIVQIFKEVDEKSLVLFDELGAGTDPQEGAALAISILDAMNQTGAQIMATTHYPELKAFAYNRNYTMNASVEFDVETLRPTYRLQIGIPGRSNAFDISQRLGLPDDVIENARGLVDEDSADLNNMIAELEDMRQQAEVRFEEAVETVQEASVLKRELEEALAEYEVNKNRLLEHANSKANAVILNAEETADKIIKELREMQQQQRSNLKDHELIERRHQLSEARPKTLKKGPIVKPKKVNHEFAPGDTVRIESLGQKGELLNRIDKKSWQVQVGHMKTTIKENNMTYVETEKPKEQRFLTTIKRDSHVKTELDLRGQRYEDAVHQLDKYLDEALLAGYAQVSIIHGKGTGALRQGVQDYLKGHRLVKSYHYGAANEGGNGMTVAVLK
>NZ_CP023643.1|WP_029092401.1|489904_490432_-|CvpA-family-protein
MVLNIIIALLLFSGVVVGMKRGAVLYILNFIGLIVVLIISYMYYRPFARHLDFIKFNVDKESALSFLNSELVFYNVIAFLILFIISSIVVKTIIRMINSIANLPVLKQLNGLIGGVLGFVIHYAVIFMGLYLILLFPNEMIQNAYNKSDVAQWVIMKTPILSDYFYHWMIQSKII
>NZ_CP023643.1|WP_069125682.1|490649_491252_+|nitroreductase-family-protein
MSNTFLNAIQNRRSIYALDANTTLSNAQITETIQTAIAHAPSAFNSQTTKAVVLYGDESTKLWNLVLDALRKVTPEAAFADTEAKINSFDAGVGTVLFFEDTSIVKGLQEAFALYADNFPIWSEQAAGISQFSVWTALAQENVGASLQHYSNLIEAQVAEAWNIPAEWKLTAQMPFGNIAAPAGEKEFAPIADRVKVYGE
>NZ_CP023643.1|WP_069125683.1|491327_493736_-|phenylalanine--tRNA-ligase-subunit-beta
MFVSYKWLQEYLPNLNQEAKALGEVISRTGIEVEDVFNYAEGIKKVVVGHVVTCEQHPNAEKLHKLTVNVGEEELAEIVCGAPNVAVGQDVIVALPGARLPGGIKIKKAKLRGEVSNGMICALQELGIDGKVVPKAFVEGIYVFTEKQTPGTDVLELLGLNDPILELGITPNRSDALSMRGVAYEVGAITAEKPVLTVPEVTNVSTQQTADLLALNVENTVDTPYYSIAIAENVVIKESPLWLQGKLMKAGIRPHNNVVDITNYILLTYGQPLHAFDFDTLAGKDVSVRRAKADEAFTTLDSVERTLSEKNLVITSNDTPIALAGIMGGLASEVTAKTTRVALETALFQPTVTRLSAKAVGIRSEASMRFEKGMDYFVAEQARQHALALLVELADATILAEPLTIDHREPFEVTLPLDVKRVNHVLGTAMTVTDVAEAFDRLQFETTHEGNVFMVTVPSRRPDISIEADLLEEVGRIYGYDNLPSTLPKGEATPGKLNYRQQKTREIRQLLEGNGFYQAITYGLETEAKAGYLALKETHLTKLAMPMSEEHSHLRTSLAAGLLDVVAYNVARRQSNVAFYEIARVFYGNETDRPTEEEHLAGAVTGLWESTPWQKIARPVDFFDVKGMIEAVVSTLGLVAPLRFEATKKAELHPGRAAAIYLGTEEVGYLGQLHPSEAARLDLPETYVFELNLQALLAADKVEKNYHEMPRFPASQRDIAVLVNNEVTNATLEDIIKENAGGLLKHIVLFDVFVNDKIGNDKKSMAYNLTYFDPSRTLTDEEVSASYDKIVVALEAIGAEIR
>NZ_CP023643.1|WP_029092404.1|493748_494792_-|phenylalanine--tRNA-ligase-subunit-alpha
MSIDKLKNLKEEAVKAIEAVIDLPQLNDVRVKFLGKKGPMTEIMKGMSKLSNEERPLMGKVANEVREAITTAMDEKHSDLEALKIEKQLAHESIDVTLPSREVKTGSSHILTQVVEQLEDLFIGMGYSIVEGPEVEQDHYNFEMLNLPKDHPARDMQDTFYITDEVLMRTHTSPVQARTMEKHDFANGPIKIVCPGKVYRRDSDDATHSHQFTQIEGLVIDKHITMSDLKGTLTAFAKKMFGEEREIRLRPSFFPFTEPSVEMDISCFKCGGSGCNVCKGTGWIEVLGAGMVHPNVLEMAGIDSSLYGGFAFGMGPDRIAMLKYGVDDIRHFYTNDVRFLEQFKVKD
>NZ_CP023643.1|WP_029092405.1|495117_495459_-|helix-turn-helix-transcriptional-regulator
MTTSMVLCPKFEEAFQLLGKRWTGLIVEVLLNGDCRRFKEISELIPNMSDRVLAERLKELEAKDIVERKVYPETPVRIEYILTPKGKDLQKATKDIHEWAEKWIDSPQEVVEN
>NZ_CP023643.1|WP_069118544.1|495553_496018_-|dUTP-diphosphatase
MKTRGFEAVPTQNRKYPEVTIKLPVRADSRSAGYDFSSNETATIAPGQKHLFWTDVCSYMLADEVLEIYVRSSIGIKKNLTMANTVGIIDSSYYANEGNYGNIGICLVNHSEETVTIEAGERIAQGIFKKYLVADEDVTLNTTRSGGMGSSGSK

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Crispr_ID: NZ_CP023643_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023643_4

1899649-1899758

Unclear

Consensus_repeat	Method
AACGGCGGTTCACGTCGTAGCTCAGG	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NZ_CP023643_4

>merge|NZ_CP023643|4|1899649-1899758|CRISPRCasFinder
AACGGCGGTTCACGTCGTAGCTCAGGTGGCGGCGCTTCAAGTGATCGTAAAGAAGGCGGCGCTCGTCGTGAACGTCCAGCTGGAAACGGCGGTTCACGTCGTAGCTCAGG

>NZ_CP023643|4|4|1899649-1899758|CRISPRCasFinder
AACGGCGGTTCACGTCGTAGCTCAGG	TGGCGGCGCTTCAAGTGATCGTAAAGAAGGCGGCGCTCGTCGTGAACGTCCAGCTGGA
AACGGCGGTTCACGTCGTAGCTCAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023643.1\|WP_069126276.1\|1900538_1901996_+\|PH-domain-containing-protein	unknown	unknown	gnl\|CDD\|225962
NZ_CP023643.1\|WP_029090553.1\|1902079_1902433_+\|holo-ACP-synthase	unknown	unknown	gnl\|CDD\|234610
NZ_CP023643.1\|WP_029090558.1\|1896065_1896299_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378933
NZ_CP023643.1\|WP_069119547.1\|1905562_1905907_+\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|132914
NZ_CP023643.1\|WP_081315941.1\|1896345_1897707_+\|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D--alanine-ligase	unknown	unknown	gnl\|CDD\|223841
NZ_CP023643.1\|WP_157759388.1\|1900138_1900546_+\|PH-domain-containing-protein	unknown	unknown	gnl\|CDD\|225937
NZ_CP023643.1\|WP_029090559.1\|1894926_1896051_+\|DEAD/DEAH-box-helicase	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|223587
NZ_CP023643.1\|WP_029090562.1\|1890886_1891564_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP023643.1\|WP_029090560.1\|1893770_1894676_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176125
NZ_CP023643.1\|WP_029090551.1\|1903649_1903997_+\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	unknown	unknown	gnl\|CDD\|367091
NZ_CP023643.1\|WP_029090564.1\|1888195_1888975_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224059
NZ_CP023643.1\|WP_029090561.1\|1891580_1892627_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|340424
NZ_CP023643.1\|WP_029090563.1\|1888949_1890872_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223650
NZ_CP023643.1\|WP_069126626.1\|1892680_1893769_-\|iron-containing-alcohol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|341451
NZ_CP023643.1\|WP_069119223.1\|1887243_1888041_-\|pyrroline-5-carboxylate-reductase	unknown	unknown	gnl\|CDD\|237008
NZ_CP023643.1\|WP_069119551.1\|1906356_1907142_+\|RNA-polymerase-sigma-factor-SigB	unknown	unknown	gnl\|CDD\|236306
NZ_CP023643.1\|WP_096699513.1\|1904578_1905544_+\|PP2C-family-protein-serine/threonine-phosphatase	unknown	unknown	gnl\|CDD\|225118
NZ_CP023643.1\|WP_069126274.1\|1902437_1903553_+\|alanine-racemase	unknown	unknown	gnl\|CDD\|143481
NZ_CP023643.1\|WP_069119549.1\|1905896_1906343_+\|anti-sigma-B-factor-RsbW	unknown	unknown	gnl\|CDD\|235217
NZ_CP023643.1\|WP_029090550.1\|1904117_1904537_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|340411

Protein	Function_ID	Function_description	E-value
NZ_CP023643.1\|WP_069126276.1\|1900538_1901996_+\|PH-domain-containing-protein	gnl\|CDD\|225962	COG3428, COG3428, Predicted membrane protein [Function unknown].	1.18432e-58
NZ_CP023643.1\|WP_029090553.1\|1902079_1902433_+\|holo-ACP-synthase	gnl\|CDD\|234610	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional.	2.06013e-47
NZ_CP023643.1\|WP_029090558.1\|1896065_1896299_+\|hypothetical-protein	gnl\|CDD\|378933	pfam12725, DUF3810, Protein of unknown function (DUF3810). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 333 and 377 amino acids in length. There is a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterized family of peptidase enzymes.	0.00667788
NZ_CP023643.1\|WP_069119547.1\|1905562_1905907_+\|STAS-domain-containing-protein	gnl\|CDD\|132914	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.	1.24468e-24
NZ_CP023643.1\|WP_081315941.1\|1896345_1897707_+\|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D--alanine-ligase	gnl\|CDD\|223841	COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane].	2.55182e-157
NZ_CP023643.1\|WP_157759388.1\|1900138_1900546_+\|PH-domain-containing-protein	gnl\|CDD\|225937	COG3402, COG3402, Uncharacterized conserved protein [Function unknown].	6.95692e-33
NZ_CP023643.1\|WP_029090559.1\|1894926_1896051_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	4.21537e-102
NZ_CP023643.1\|WP_029090562.1\|1890886_1891564_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	6.95694e-69
NZ_CP023643.1\|WP_029090560.1\|1893770_1894676_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176125	cd08434, PBP2_GltC_like, The substrate binding domain of LysR-type transcriptional regulator GltC, which activates gltA expression of glutamate synthase operon, contains type 2 periplasmic binding fold. GltC, a member of the LysR family of bacterial transcriptional factors, activates the expression of gltA gene of glutamate synthase operon and is essential for cell growth in the absence of glutamate. Glutamate synthase is a heterodimeric protein that encoded by gltA and gltB, whose expression is subject to nutritional regulation. GltC also negatively auto-regulates its own expression. This substrate-binding domain has strong homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.22237e-64
NZ_CP023643.1\|WP_029090551.1\|1903649_1903997_+\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	gnl\|CDD\|367091	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system. PemK is a growth inhibitor in E. coli known to bind to the promoter region of the Pem operon, auto-regulating synthesis. This family represents the toxin molecule of a typical bacterial toxin-antitoxin system pairing. The family includes a number of different toxins, such as MazF, Kid, PemK, ChpA, ChpB and ChpAK.	4.09115e-37
NZ_CP023643.1\|WP_029090564.1\|1888195_1888975_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	1.65108e-100
NZ_CP023643.1\|WP_029090561.1\|1891580_1892627_+\|sensor-histidine-kinase	gnl\|CDD\|340424	cd16948, HATPase_BceS-YxdK-YvcQ-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Bacillus subtilis BceS, YxdK, and Bacillus thuringiensis YvcQ. This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) such as Bacillus subtilis BceS and Bacillus thuringiensis YvcQ, the HKs of the two-component regulatory system (TCSs) BceS-BceR and YvcQ-YvcP, repsectively, which are both involved in regulating bacitracin resistance. It also includes the HATPase domain of YxdK, the HK of YxdK-YxdJ TCS involved in sensing antimicrobial compounds.	4.15317e-41
NZ_CP023643.1\|WP_029090563.1\|1888949_1890872_+\|ABC-transporter-permease	gnl\|CDD\|223650	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms].	3.08661e-06
NZ_CP023643.1\|WP_069126626.1\|1892680_1893769_-\|iron-containing-alcohol-dehydrogenase-family-protein	gnl\|CDD\|341451	cd08172, GlyDH-like, Glycerol_dehydrogenase-like. This family contains glycerol dehydrogenase (GlyDH)-like proteins that have yet to be characterized, but show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent; the zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.	0
NZ_CP023643.1\|WP_069119223.1\|1887243_1888041_-\|pyrroline-5-carboxylate-reductase	gnl\|CDD\|237008	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed.	6.48379e-92
NZ_CP023643.1\|WP_069119551.1\|1906356_1907142_+\|RNA-polymerase-sigma-factor-SigB	gnl\|CDD\|236306	PRK08583, PRK08583, RNA polymerase sigma factor SigB; Validated.	1.61685e-140
NZ_CP023643.1\|WP_096699513.1\|1904578_1905544_+\|PP2C-family-protein-serine/threonine-phosphatase	gnl\|CDD\|225118	COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription].	1.1205e-58
NZ_CP023643.1\|WP_069126274.1\|1902437_1903553_+\|alanine-racemase	gnl\|CDD\|143481	cd00430, PLPDE_III_AR, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase. This family includes predominantly bacterial alanine racemases (AR), some serine racemases (SerRac), and putative bifunctional enzymes containing N-terminal UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase (murF) and C-terminal AR domains. These proteins are fold type III PLP-dependent enzymes that play essential roles in peptidoglycan biosynthesis. AR catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. SerRac converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. murF catalyzes the addition of D-Ala-D-Ala to UDPMurNAc-tripeptide, the final step in the synthesis of the cytoplasmic precursor of bacterial cell wall peptidoglycan. Members of this family contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. AR and other members of this family require dimer formation and the presence of the PLP cofactor for catalytic activity. Fungal ARs and eukaryotic serine racemases, which are fold types I and II PLP-dependent enzymes respectively, are excluded from this family.	2.69631e-148
NZ_CP023643.1\|WP_069119549.1\|1905896_1906343_+\|anti-sigma-B-factor-RsbW	gnl\|CDD\|235217	PRK04069, PRK04069, serine-protein kinase RsbW; Provisional.	2.49294e-56
NZ_CP023643.1\|WP_029090550.1\|1904117_1904537_+\|hypothetical-protein	gnl\|CDD\|340411	cd16934, HATPase_RsbT-like, Histidine kinase-like ATPase domain of the anti sigma-B factor Bacillus subtilis serine/threonine-protein kinase RsbT, and related domains. This family includes the histidine kinase-like ATPase (HATPase) domain of Bacillus subtilis serine/threonine-protein kinase RsbT, a component of the stressosome signaling complex of Bacillus subtilis. The stressosome is formed from multiple copies of three proteins, a sensor protein RsbR, a scaffold protein RsbS, and RsbT, and responds to environmental changes by initiating a protein partner switching cascade. Stress perception increases the phosphorylation of RsbR and RsbS, by RsbT. Subsequent dissociation of RsbT from the stressosome activates the sigma-B cascade, leading to the release of the alternative sigma factor, sigma-B.	1.98677e-13

>NZ_CP023643.1|WP_081315941.1|1896345_1897707_+|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D--alanine-ligase
MKETVQTVARWVDGIVEGDNSIEITGISFDTRKINKGNLFIPFVGERDGHAYIEDAREKGTYASFWQADSTVEKPTGLALIIVEDTLVALQKLAKSYLEKINPKVVGITGSNGKTTTKDMMASVLETTFKVHKTQGNYNNHIGVPYTILSMPLDTEVAVLEMGMNHAGEIAILTAIAQPDIAVITNIGEAHLEYLKSRGGIADAKLEIAEGLSADGLLIYPDDPLLKERLVGEAVFQRESFGESENNTVYPTSIETSMDSTDFTTSLTDKIKFHVPIVGEHNVYNALAVFLTARRLGVSVANIQKGLYEIGRTSDRLEWIEGRNGIQMLSDVYNSSPTALKAVLKTFEHIKTNRRKIIVLADMLELGAQSPMLHAGIADSLTEEIDEVFAYGPYMSYFTEAAKSVLSAEKVHYFTDLNKLTEALEASVSGDEMILFKGSNSMRLNNVVAHLAK
>NZ_CP023643.1|WP_029090558.1|1896065_1896299_+|hypothetical-protein
MLDLLMLIIIMILTGFGIFFSHIPVFPDSLLYVLWGIMLFYIFIRIFFGKFFRNREVTIVLFTLLWLIVSFFIAWFI
>NZ_CP023643.1|WP_029090559.1|1894926_1896051_+|DEAD/DEAH-box-helicase
MDQTNWPSEWQDKWKALGYNEPTEIQIKSYEPLMTGTDVVAQAPTGTGKTLAYALGHLSRVTNEKKCQWLILAPSQELVVQIADVIRPFLINGVTMTTLGGGANIKRQLEKLKKKPQVLVGTPGRVEELIKQKKLKMHEIKYITIDEADVLLTEEHEETTRFICQSANRDRQISLFSATTSERLDNFFDKVESSQQIEVVAGEAKMPTTIDHIYIQVNPRDKVKTLYRLAQVENMRAIVFVNTIGRLNTVYEKLNHDGVKISALHGDLSKLQRQESVRDFKKGETSLLLATDVAARGIDLPNLPAIIQFDMAQSLTQYVHRSGRTGRMGEQGAAISLVTDREARELKQMVKENDVKMIEQIVKFGHLIDPQKTK
>NZ_CP023643.1|WP_029090560.1|1893770_1894676_-|LysR-family-transcriptional-regulator
MELRQLLYFVEVAKHEHMTKASEQLHVAQSAISRQITNLEDELGVELFNRMGRNLHLSKIGNLYLSQVKIALNELKKAENIVSEYANPEIGTVKIGFPTSLATNLLPTLISSFREKYPNINYEFVEGSNKELNENLLSGNLDLTFFSPLPIKSNFIDTFTFFNEKLKLVIPNNHHLAQKKQVNLVDLKNEKFIFFPETFSLFTDITSACESVGFQPEIIFQSADLHTINGLVEAGLGVAILPEIILADNNPKDSHIIDITNPALSRTVGIGYTLQRRLSPSEQLFKDFLISYFNVDIEVAN
>NZ_CP023643.1|WP_069126626.1|1892680_1893769_-|iron-containing-alcohol-dehydrogenase-family-protein
MLMNLNPRPAPQEYLCREGAYDTLPEKLAERFIKKAILVHGTKSMAVAQPFLPVFDDIVIIPIAFNGECSEEEIQRLVSLCASEQADAIIGLGGGKIMDTAKAAAYRSGALPVILLPTMASNCAAWTPLSVLYTPSGNSTGFEVYPQQISLLLIEPRVIINSPIPFFIAGIADTLAKWYEADAILSQINEPSLALDFCRYAAQICHDIPLALGEKAVEDMRNKQPTSTWIKVMETNIMAGGLVGGFGDEYGRTAAAHPIHDALTLRAETHQFLHGVKVAYGVLVQLAMEGKWDEIDRLSTFYNTFNLPRCLADLNLNHLTDNELLIIANRACEPGESIHFLPGEVTPQLVVSAIRNLEKHNY
>NZ_CP023643.1|WP_029090561.1|1891580_1892627_+|sensor-histidine-kinase
MTILQYLKEKKSFLAYATVLFVFILVFLLTQPGNIMRLGDYHYLMFIYLCLTLFYLVVDYLKMNRFWRQINEVLTTNETLDNIAALPKGHSTQQKMFMRSFRQQVKNYHRYVSKSIDKDKEKQNYALYWAHEIKTPIIASKMILKDNKAVLPEKVYQQLLSEMNEVDRLTMQSLYFSRLDSFEIDYLITEINAERIVKDAIKRQATAFINKRIKLNINVPEIWIRSDSKWLSYVCDQIISNAVKYTPQGGEVSCCLEADGRQAKLMISDTGPGIPIEDHQRVFEKGYTGIQGRNTYKSTGMGLYLAKEMSKKLGHVLSLESIEGVGTTVSIIFETKEQYFMPENEKVY
>NZ_CP023643.1|WP_029090562.1|1890886_1891564_+|response-regulator-transcription-factor
MMKVYIVEDDPIILESMKQNLMRWGLEVHTVIDFENVKKEFLDIEPHFVILDVTLPKFDGFYWCRQIRDISNVPIIFISSRDSQMDQIMGMNMGADYYIEKPVDMDILMARVNALLRRVYSYKDLEQPTVMEQEGLFLHIDTNVVSYENNKIDLTKNEFLILYTLMQNQTKIVSRDEIMRVLWEDESFVDDNTLTVNIVRLRKKLTEIGIHDRIQTKKGQGYILK
>NZ_CP023643.1|WP_029090563.1|1888949_1890872_+|ABC-transporter-permease
MIFQLALRNIKRSFGVYRVYLTSLIFATAIYFIFSNLKYNRQLLNNLDNANYIQLGFNMSAVVLFFVMAIFIFFSSNYFLRERKKEIGTYFLLGMRRYQVRATLFIETFTMSLIALCSGLLCGVFFSKLATMILFKFVGFDKASGFSFSYPALIETVVVFTSLIFLTAVTGMYRVKNFPIINLIQPKEKKYKPYLTVLFSTIGLVLILFGYSIACLFDAEGEKILNISLFLWIPLVTLLVCVGTYFVIQSLFPLLLTVLATLKIYVYRGTNMIWIEQLRSRMHSQVVMITTITILSAVTMTAFCIVNSLFYKTTIDVRNNPMINYQLLNGNPKMYDEALAKVDQRKLDFKIHTSFLTGDIEVPKMVNNPYNIRVIPWEDYHKIARKFNFRPSEKILGNESIFLYSKNNEGINFSANQKSVVYKIGNEKVHLKTTEIREKENVFSPYNSILVVSNQLYYELSQKTKATPVYYINLKPFTDSRELVTQMNEVVSHYHGASVISIEEDKNWSKLTFGMILYIGLFLSLVFIVTTGTIIYFKQIIDATKDIQTYKILYKMGVSYEEMRMIVAKQLGFIFIVPLFIAMSHCLFALFAYFKLLGFQFDISIVFSLSIYAVIYLCYYVMAVYHYLKIVCPPEMRTNI
>NZ_CP023643.1|WP_029090564.1|1888195_1888975_+|ABC-transporter-ATP-binding-protein
MEPVLSVKHIRKIYGKNDALYTAINGISFDIPKGEFVGIMGPSGAGKTSLLNILSTIDEASSGEVFVDGVDLLNLTEKKMAQFRKEKLGFIFQEYNLIETLTIKENIILPLTILKFNKSEIERRYQKTIEAFHIEDTSERLPSQISGGQRQRAAAARAFISSPAILFADEPTGALDSNASTEFLQLLAQRNKVEKTTILMVTHDAYAASYCERILFIKDGTIFTELYKGKRTRQAFLKSILDVLAVIGGAKDDFSTGLT
>NZ_CP023643.1|WP_069119223.1|1887243_1888041_-|pyrroline-5-carboxylate-reductase
MQTIGFIGVGNMGGAIARGLISKNIISPNNLIMSGGSGPRTAKLQAEIGGTLLSNIEVAKHADILFIGVKPVIMPALLAEIKETLAARPNTLIVTMAVSLTIDWYEEQLSSTIKLIRTMPNTPVAVGAGMTSIIPNGNISPNELTSVQAFFNALGKTVVIEERLMDTASALAGSSPALVDIFIEALADGAVAKGLPRAQAYEMAVQTIIGSAKLMQTTQLHPGELKDQVCSPGGTTIEAVKTLEKHNFRYAVIDAIGQCVDKAKK
>NZ_CP023643.1|WP_157759388.1|1900138_1900546_+|PH-domain-containing-protein
MAIFFVLTIAYLTLAYLFDWSYYWGSIGLVILLLLYFVQDKVINSLRWHRFRFEIREEELEIAYGIIFRHRELIPMVRIQHVETTQGPLLRKAGLMTVDIHTAATVHTILGLEENQAEQLRNQIIALVKVAVEDV
>NZ_CP023643.1|WP_069126276.1|1900538_1901996_+|PH-domain-containing-protein
MSNIHTKTRQREHPIQLFILFFEFIKTWWFLLAMLFFNVVIKQTVSGFLVYGGSIVLIVLLLLKLVSYFFRYYEVAEDGVHQYEGIFVKEHKFMPYERIQSIHDQQWFFYQPFDVVQAKIEVAGSESTIVLNAVKTSDIDLIKNYRKKAVDSKKTSELNEVNKGPNESVIENIEKTVWEETLPFKNIIINALSSLKSYIGLFVLIGIINQLQSYIGEKYIDAQIERLFNYGVITIIVLILLAFLISVLIALVSDYIKYYNFTLHGYEGYFVIERGLFERHKTTVSYDKVQAVSIKKGIIAHFLGYASISVIQAGEVEGTDKYVMPLIKENEIEGFMSKVFPMMTFPEVQQGLALRTLHSFFLTRILWLYAPLLIGIYFISKPWAWFLLMLPLLFFIKYIIQRRYSGYKIAGRFLVFQVIGWFTTEKLYVNRNRIQAMYFKDSIWMEKNDFKHVRLAIKETTSYEVSLQYLKNIEAQKIYNWFSQK
>NZ_CP023643.1|WP_029090553.1|1902079_1902433_+|holo-ACP-synthase
MIIGIGIDTVDLDRIAQLIERNSRFASRVLTEAEILACNKLKGTRVIEFVAGRYAAKEAFSKAYGTGIGPECSFQDLEILNEKGGKPVITHPFGMNAFVSITHTSTIAMAQVILEER
>NZ_CP023643.1|WP_069126274.1|1902437_1903553_+|alanine-racemase
MTLGTHRNTWIEVNLKNIEENISNEKKILSENVAVFAVVKANGYGHGAVAVAKAAKAGGATGFCVALLDEALELRAAGINEPIIILAPIRAEDVAIAQKESLSIPICDLEYWQLVKPHIAENLPLYLHLVIDSGMGRIGFRDEEEIKIIEKNIVEHPTAQLEGVFTHFATADELDTTYFKQQLKTFKVLKTALITQPKYIHCSNSAAALMHPELEISCIRLGIAMYGLSPSMEIKPMLPYQLKPALALFSKLTQVKWVEEGQSIGYGATYKVAETGEWIGTLPIGYADGWLRDRSGSFVLIEGQRCQIIGRVCMDQCMIRLPKYYPIDTTVTFIGESYNESVTTDDVADYSGTINYEIVCLLSDRIPRYYI
>NZ_CP023643.1|WP_029090551.1|1903649_1903997_+|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin
MIRRGEIYYADLSPVKGSEQGGIRPVLIIQNDIGNKFSPTVIVAAVTAKIQKAKLLTHVEVKSSKKGLNKNSVILLEQIRTIDKQRLTDRVTVLDKKVMKEVDNSLKISLSLVTF
>NZ_CP023643.1|WP_029090550.1|1904117_1904537_+|hypothetical-protein
MHIKSKFEINSEWDIIEVRQEVRKVCKKIGFDYVTQAYIINFTSGICQNMYTVAQSGVFSIEGIIEEKRMGIKIIAVDQGPGIENMADFLSENIAVNQTDGIRLEMLSVRRWFDEFEIASTELGVDGVEVTVTKWLIKG
>NZ_CP023643.1|WP_096699513.1|1904578_1905544_+|PP2C-family-protein-serine/threonine-phosphatase
MNGYIKEGDEKYLYNINKWSKEAISQGVSPEEIVGIHRTALLTIPEKLPDIVLSSLEVLMTVMVNYGADYRRNLIIKKQQEELQKEILKAGKIQKSLLQTEIPSKEHLDVGVCDKPANQMSGDYYHFFENETAITVSLADVIGKGIPAALAMSMLKYGMQNAPDDVVSVSGMLSYLNKVVEENISDNMFITMFLGVYDKSNKVFTYSSAGHEIGFWYNALDNEYQDLYAKGLMLGIQEEVTYHEYQRSLSIGDFIVVLSDGVTETRIGDGFIERETLKELIYSFHELSAQDIADNVYKKLAELQNFKLYDDFTLIIIKRIA
>NZ_CP023643.1|WP_069119547.1|1905562_1905907_+|STAS-domain-containing-protein
MVLNTSVEETNDNTAIFTLRGEIDGNTAPRLEIEMSKFAEIENFVIRVNLSEVTYMDSTGLGVFVGIYKSLVKVNGQLLIEEVPKRLYRLFTITGLDNIMSINRKEKDDGADDN
>NZ_CP023643.1|WP_069119549.1|1905896_1906343_+|anti-sigma-B-factor-RsbW
MTIKKIDCIEMKIPAKSEYISLGRLTLSSIANQCGFSYEIIEDLKIAISEAITNAVTHAYQNSEEGIIEIIFSRYEDRLGIRVKDEGVTPSDGVKLSSDRKPYTADVTADTLEVGGLGLFLIQALMDDVVLKEENGVEIEMIKYFDKE
>NZ_CP023643.1|WP_069119551.1|1906356_1907142_+|RNA-polymerase-sigma-factor-SigB
MVHRGKATDPTKEQIDEWIQQVQKSNDEEAKTKLVLHYSGLVEALARKYSNGKQSYHNDLVQVGYLGLLGAIARFDASFDRKFESFAIPTIIGEIKRYLRDKTWSVHVPRRIKELGPKIKNTVEELTIALQRSPSIQEIAQSIDYTQEEVLEAMEMGQSYQALSVDHTFETDNDGSQMSLLDVVGEDEDGYEMIEQRMLLEKAMPVLNDRERMVLQLTFFDNKSQKEAGEEMEVSQMHVSRLQRGAIKKLRAALLKMQYDE

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Crispr_ID: NZ_CP023643_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023643_5

1948869-1948956

Orphan

Consensus_repeat	Method
AGCTTACGAGAATAGTATGGGACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP023643_5

>merge|NZ_CP023643|5|1948869-1948956|CRISPRCasFinder
AGCTTACGAGAATAGTATGGGACGGAGATTGCGTAAGCAATTGAGTACCAATCAGTAGTTAGAAGCTTTACGAGAATAGTATGGGACG

>NZ_CP023643|5|5|1948869-1948956|CRISPRCasFinder
AGCTTACGAGAATAGTATGGGACG	GAGATTGCGTAAGCAATTGAGTACCAATCAGTAGTTAGAA
GCTTTACGAGAATAGTATGGGACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023643.1\|WP_029091151.1\|1945657_1946758_+\|butyrate-kinase	unknown	unknown	gnl\|CDD\|235099
NZ_CP023643.1\|WP_069125866.1\|1951050_1951641_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023643.1\|WP_069126315.1\|1940476_1942264_+\|1-deoxy-D-xylulose-5-phosphate-synthase	unknown	unknown	gnl\|CDD\|235470
NZ_CP023643.1\|WP_029091144.1\|1937991_1939344_+\|exodeoxyribonuclease-VII-large-subunit	unknown	unknown	gnl\|CDD\|234714
NZ_CP023643.1\|WP_069118891.1\|1942277_1943102_+\|TlyA-family-RNA-methyltransferase	unknown	unknown	gnl\|CDD\|224110
NZ_CP023643.1\|WP_152792314.1\|1946832_1946928_-\|stressosome-associated-protein-Prli42	unknown	unknown	unknown
NZ_CP023643.1\|WP_069118888.1\|1947186_1948602_+\|NADP-dependent-phosphogluconate-dehydrogenase	unknown	unknown	gnl\|CDD\|236453
NZ_CP023643.1\|WP_069118882.1\|1955192_1957031_+\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
NZ_CP023643.1\|WP_069118881.1\|1957157_1958105_+\|DnaJ-domain-containing-protein	unknown	unknown	gnl\|CDD\|223560
NZ_CP023643.1\|WP_029091146.1\|1939569_1940451_+\|polyprenyl-synthetase-family-protein	unknown	unknown	gnl\|CDD\|182567
NZ_CP023643.1\|WP_029091162.1\|1960614_1960788_+\|30S-ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707
NZ_CP023643.1\|WP_029091145.1\|1939336_1939573_+\|exodeoxyribonuclease-VII-small-subunit	unknown	unknown	gnl\|CDD\|179195
NZ_CP023643.1\|WP_069126314.1\|1943830_1945513_+\|DNA-repair-protein-RecN	unknown	unknown	gnl\|CDD\|223571
NZ_CP023643.1\|WP_029091149.1\|1943350_1943800_+\|transcriptional-regulator-ArgR	unknown	unknown	gnl\|CDD\|179807
NZ_CP023643.1\|WP_096879637.1\|1951851_1952991_+\|oxygen-independent-coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|236309
NZ_CP023643.1\|WP_069125867.1\|1949668_1950958_+\|O-acetylhomoserine-aminocarboxypropyltransferase/cysteine-synthase	unknown	unknown	gnl\|CDD\|225428
NZ_CP023643.1\|WP_029091160.1\|1958763_1959705_+\|50S-ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|283886
NZ_CP023643.1\|WP_029091161.1\|1959706_1960453_+\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	unknown	unknown	gnl\|CDD\|236959
NZ_CP023643.1\|WP_069118884.1\|1953510_1954557_+\|heat-inducible-transcription-repressor-HrcA	unknown	unknown	gnl\|CDD\|234621
NZ_CP023643.1\|WP_029091157.1\|1954571_1955141_+\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|237622

Protein	Function_ID	Function_description	E-value
NZ_CP023643.1\|WP_029091151.1\|1945657_1946758_+\|butyrate-kinase	gnl\|CDD\|235099	PRK03011, PRK03011, butyrate kinase; Provisional.	1.54712e-144
NZ_CP023643.1\|WP_069126315.1\|1940476_1942264_+\|1-deoxy-D-xylulose-5-phosphate-synthase	gnl\|CDD\|235470	PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional.	0
NZ_CP023643.1\|WP_029091144.1\|1937991_1939344_+\|exodeoxyribonuclease-VII-large-subunit	gnl\|CDD\|234714	PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed.	0
NZ_CP023643.1\|WP_069118891.1\|1942277_1943102_+\|TlyA-family-RNA-methyltransferase	gnl\|CDD\|224110	COG1189, COG1189, Predicted rRNA methylase [Translation, ribosomal structure and biogenesis].	1.23726e-126
NZ_CP023643.1\|WP_069118881.1\|1957157_1958105_+\|DnaJ-domain-containing-protein	gnl\|CDD\|223560	COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones].	3.17771e-110
NZ_CP023643.1\|WP_069118888.1\|1947186_1948602_+\|NADP-dependent-phosphogluconate-dehydrogenase	gnl\|CDD\|236453	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase.	0
NZ_CP023643.1\|WP_069118882.1\|1955192_1957031_+\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NZ_CP023643.1\|WP_029091146.1\|1939569_1940451_+\|polyprenyl-synthetase-family-protein	gnl\|CDD\|182567	PRK10581, PRK10581, (2E,6E)-farnesyl diphosphate synthase.	9.40224e-84
NZ_CP023643.1\|WP_096879637.1\|1951851_1952991_+\|oxygen-independent-coproporphyrinogen-III-oxidase	gnl\|CDD\|236309	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase.	0
NZ_CP023643.1\|WP_029091162.1\|1960614_1960788_+\|30S-ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	4.55179e-11
NZ_CP023643.1\|WP_029091145.1\|1939336_1939573_+\|exodeoxyribonuclease-VII-small-subunit	gnl\|CDD\|179195	PRK00977, PRK00977, exodeoxyribonuclease VII small subunit; Provisional.	2.6577e-14
NZ_CP023643.1\|WP_069126314.1\|1943830_1945513_+\|DNA-repair-protein-RecN	gnl\|CDD\|223571	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair].	0
NZ_CP023643.1\|WP_029091149.1\|1943350_1943800_+\|transcriptional-regulator-ArgR	gnl\|CDD\|179807	PRK04280, PRK04280, transcriptional regulator ArgR.	1.97991e-74
NZ_CP023643.1\|WP_029091160.1\|1958763_1959705_+\|50S-ribosomal-protein-L11-methyltransferase	gnl\|CDD\|283886	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.	1.75706e-107
NZ_CP023643.1\|WP_069125867.1\|1949668_1950958_+\|O-acetylhomoserine-aminocarboxypropyltransferase/cysteine-synthase	gnl\|CDD\|225428	COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism].	0
NZ_CP023643.1\|WP_029091161.1\|1959706_1960453_+\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	gnl\|CDD\|236959	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional.	9.96676e-77
NZ_CP023643.1\|WP_069118884.1\|1953510_1954557_+\|heat-inducible-transcription-repressor-HrcA	gnl\|CDD\|234621	PRK00082, hrcA, heat-inducible transcription repressor; Provisional.	1.36229e-117
NZ_CP023643.1\|WP_029091157.1\|1954571_1955141_+\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|237622	PRK14140, PRK14140, heat shock protein GrpE; Provisional.	9.47216e-64

>NZ_CP023643.1|WP_069118888.1|1947186_1948602_+|NADP-dependent-phosphogluconate-dehydrogenase
MSKQEIGVIGMGVMGKNLALNIESRGHSVSIFNRSASKTEDVIKDHSDKNLVPFYTVEEFVNSLESPRRILLMVQAGDATDKTIDAVKPFLNKGDILIDGGNTFYKDTIRRNAELSAEGFNFIGTGVSGGEEGALKGPAIMPGGQKEAYELVAPIFEEIAARAEDGEPCVAYIGADGAGHYVKMVHNGIEYGDMQLIAEAYALLKHHVGLSHDELADVFEDWNQGELDSYLIDITKDILKKKDAETGLPLVDVILDRAGNKGTGKWTSQSALDLGTPLPLITESVFARYISALKEERVAASKVLTGPAKTPFTGDKEAVVEAVRRALYLSKIASYAQGFAQMRMASDENNWDLNFGEIAKLFRAGCIIRARFLQKITDAFSKEPELKNLFLDPYFKDIADNYQEALRDVVATAVKAGIPVPTFSAAVSYYDSYRTETLPANLIQAQRDYFGAHTYERTDKEGTFHTEWLEK
>NZ_CP023643.1|WP_152792314.1|1946832_1946928_-|stressosome-associated-protein-Prli42
MGSNKMVKIVVYVLIFVLVASSLLSSALFFF
>NZ_CP023643.1|WP_029091151.1|1945657_1946758_+|butyrate-kinase
MLGKKRILIINTGVQSIKIAIFDEDKVVFNKTIREQKVQPINDYITLQKQLTATKQRLLLQLKKAKIEMKSIDLIVSNTGYIQPVKSGAYTINEAMVSDLIEHSFYEAEGSFGAILAHSLAEYYQVPAITYDPPTVDELQDVARVSGHPDFVRRSYFNALNQKAVGRHIAKKIGTTYEEAKFIIVHLGSAVSVGAHENGKVIDVNNGYYGEGPFSTIRTGSLPMEAVMKKYIASPEEVKELPLILKQGGFLGYLGTDSLTDVEWRIVEDDQEAIAIYDAMTYQIAKEIGAYATVLKGNVDAVILTGGMSISPFLVKKISEYIKWIAPIHIVEDQLEMQTLSQVGLRVLNNEEEVMMYTSCDAKRHK
>NZ_CP023643.1|WP_069126314.1|1943830_1945513_+|DNA-repair-protein-RecN
MLQELSIRHLAIIEEISLSFKKGLTVLTGETGAGKSIIIDALGLIVGGRASNDLIRHGADKADLEALFTIEKNKRAHSVLEELGIEVEDEMVVLHRTLMRSGKNVCRINGKLVTTTNLRDVGETLLDIHSQHESQDLMNDAHHIYLIDQFAAEKIAEPLKVYQLLYAELKNKRQEFNRFNKNEQELAQRIDMLHFQNKELEAANLVLGEEEELAAERSLLANYEKINHNVEASYDLLQGEQSTLDQVAKVMNHLTAIQEVDGRYKEWFETVQTAYFSLSDVASDLNQELSTLEYNPEQLNNIETRMDIINQLKRKYGDSVAEMMAYHEKISQEIEHLEHSESHSEQLQKEIEIVNEKLQLLANDLTVIRQQAAEELTVSIHDEFKELYMDKAIFKVNFETQELGERGNNRIQFYTSTNPGEPLKPLHKIASGGELSRMMLAMKTIFSKHQGITSIIFDEVDTGVSGRVAQAIGQKIYSVSVGSQVLCISHLPQVAAMADNHYHIEKTVSASRTRTTVSELSLDKRVAEIAMMMSGVEMTTSTEMHARELIQQSEKMKNIG
>NZ_CP023643.1|WP_029091149.1|1943350_1943800_+|transcriptional-regulator-ArgR
MNKAQRHVLIRDLIANNDIDTQEELVTLLEEKGNSVTQATVSRDIKELHLVKVPSLRGGYRYSLPADNRFNPLDKLKRTLVDSFIRMVKVNNTLIMHTLPGNANAIASLIDNSQFKGIAGTISGDDTILVICLSEQSADEYETMFLEML
>NZ_CP023643.1|WP_069118891.1|1942277_1943102_+|TlyA-family-RNA-methyltransferase
MKIKERVDVLLVQQGLFDTREQAKRAVMAGLVYIKEERVDKPGEKIEITVELNVKGQRMPYVSRGGLKLEKALEAFDFDIQDKIMLDIGSSTGGFTDCALQNGAKMSYALDVGSNQLAWKLRNDERVEVMEHTNFRYAELASFTKGQPEFATIDVSFISLRLILPNLTTILATNGDVMALIKPQFEAGREQVGKKGIVRDVKVHKAVVEEVLDFARKLGYEVRNLSFSPITGGEGNIEFIAHLRWTADTTVEAEYNAPESIDDVVIKGHHTLKG
>NZ_CP023643.1|WP_069126315.1|1940476_1942264_+|1-deoxy-D-xylulose-5-phosphate-synthase
MGAYQKWLTPEQLKVASFEELTQQASAVRQFLIESLAETGGHLAPNLGVVELTIALHRVYTSPKDKLIWDVGHQAYVHKLLTERGNHFHTLRQCDGLDGFPKRSESLHDVWESGHSSTSLSAASGFAIARDLFKQSHAIVPIIGDGALTSGLAYEALQTIGDKQLNITIVLNDNGMSIAPNVGALHKMLQSIRTKPFIHKMNDAEGTAPFFESLGLKYIGPIDGHDIQSLSYFLEKSKQVEGPVILHVLTVKGKGYLPAEEDQRGIWHGVAPYDIATGNLKTIAKMQNWSEFISDTLIDFAQQDEAIVAITPAMSVGSQLEKFQRRFPNRFFDVGIAEQHAMTMAAAMGMNGLKPFVSIYSTFLQRAYDQLIHDVCRQSTNVFIGIDRSGLVGADGETHQGIYDVSFLMAVPDLVVMMPKNAVEAQVLMRTGFAYEGPIAMRYPRGYIDHPPLKETIATVPIGSWEVTLPGATVAIIAYGPMVKTAIEVAALLKVKGILIEVVNARFIKPMDFTYLNDLANRKIPVFIIEEAITTGGLGESVLSYLHDKTAAPIQIMGLPNHFIPHGKPDEQLHLFGIDTITIAKKIHDFIENME
>NZ_CP023643.1|WP_029091146.1|1939569_1940451_+|polyprenyl-synthetase-family-protein
MSFETFSKESKVKLDQALVKTIETLQNVESRHQEALKYSLSAGGKRIRPLLLLATFGLFEKELDKAMIPAIAMEMIHTYSLIHDDLPAMDNDDYRRGRLTSHKAFDEATAILAGDGLLTLAFQLLAEAPEIDDTTRIKLIQLYAQSAGPSGMISGQQADIEAEKTTVSLEALAEIHSQKTGALLTASVCSGAIIGKASSDEYRILEEYSKKIGIAFQIQDDILDVIGDSKKMGKNTGADQVLNKSTYTSLLTLEGAQKELANYTSEAYELLSQLHQDTTNLEALTALIAERDA
>NZ_CP023643.1|WP_029091145.1|1939336_1939573_+|exodeoxyribonuclease-VII-small-subunit
MNEETNVTFEEAMIQLDNVVKQLENNEIGLEEAMNLYQNGVKLAALCEKQLKNAEEKMVQLVQADGETTDFEMKEPEA
>NZ_CP023643.1|WP_029091144.1|1937991_1939344_+|exodeoxyribonuclease-VII-large-subunit
MSANYLSVTLLTGYIARKFSSDPYLKKVYVQGEISNFKRQASGHLYLTIKDEKAQIRAVMFAKAAQKINFQPEDGMKVLIQGRVDVFERGGNYQFYVEDMQPDGVGALFVRFEQLKKSLTEQGVFNVSHKLVLPTYPKRIGVITSPTGAAVRDIITTLKRRSPQTEIVLFPAAVQGDKAIDEISHQIKRAGVFSPEIDVLIVGRGGGSIEDLWAFNEEKVVRAIYESRIPIISAVGHETDTTLSDYAADYRAPTPTAAAEIAVRQTVDILTNVLTTQQQLAQSMKHIIAMKNQRLLVHRNALAAHQPQRIIEQNYQRIDNYKQRLSNLLEGKVSQQKFALERVNWRLLQASPADRIQRYHEKWENQSQQLTKNYRKQIDDKRLALAHVVEKIEAVSPMQVMKRGFSLIETQQHKMVKSVEEVAINETLQIRLSDGIIKATVTDKEMASNE
>NZ_CP023643.1|WP_069125867.1|1949668_1950958_+|O-acetylhomoserine-aminocarboxypropyltransferase/cysteine-synthase
MTKEHQFQFETLQIHAGQEPDPTTGARAVPIYQTTSFVFKNAEEAADFFQLRKPGNVYGRIMNPTQDVFEQRIAQLEGGTAALATASGASAIFYAILNVANSGDHIVAASTLYGGTYELFKSTLSKLGITVSFVDPDDSTNFETAIKPNTKAIFAETIGNPRINVLDIEAVAAVAHANNIPLIIDNTFGTPYLIRPFDFGADIVVHSATKFIGGHGTTLGGILVDSGKFDWRASGKFPDFTTPDESYSGLVYADVPDVAFALKARVQLLRNTGAAISPQSAFYLLQGLESLSLRVERHVSNARAVANYLNEHPAVEWVSYPELDGNPYQDLSKKYLPKGAGSIFTFGIKGGVTAGKTFIDSIKLFSLLANVGDSKSLVIHPASTTHSELSEADQAKAGITPDLIRLSIGLENIDDILWDIEQALEKTQK
>NZ_CP023643.1|WP_069125866.1|1951050_1951641_+|hypothetical-protein
MINIVSVLFNRNTESENALSDLRSSMAGFSVLTAVVLKKTATGISRYDGFNVDKTDDSWSTGGLIGGIVEIIDGPLGALLGPDLGPLMGSASIDDKTIVEAINNNLALNQSALLLIVEEEENGLLDQYLNERGAHTVVREPAVTVEFQVLHAQEVEAELREEAITKLQENRKHKLNDRVEDSIGTMEERFRNWLKK
>NZ_CP023643.1|WP_096879637.1|1951851_1952991_+|oxygen-independent-coproporphyrinogen-III-oxidase
MTAVYIHIPFCEHICYYCDFNKVFLEGQPVDQYIDTLLLEMKMRLEERPVENVETIFVGGGTPTTLTPKQLDKLCGGIRELLPYDEATGEFSFEANPGDLSLDKLEVMRQHGVNRLSMGVQSFNQDLLKKIGRIHTVADVYQSVKNAHQVGFENISIDLIFSLPGQTEEDFKDTLSKALALDLPHYSAYSLIVEPKTIFYNLMQKGKLILPGQDAEANMYGYLMDTMAAHGRQQYEISNFCKPGYESRHNITYWANEEYYGFGAGAHGFLGDTRYSNAGPLKKYMTPLEAGELPTFQTKDLGLNEHIEEEMFLGLRRTKGVSISHFKEKFGKDMFDVYHEPINRFVDKGLMQVEDDQVKLSRQGRFLGNVVFRDFLFER
>NZ_CP023643.1|WP_069118884.1|1953510_1954557_+|heat-inducible-transcription-repressor-HrcA
MLSERQLLILKTIVRNYIGTAKPIGSSALVNESNLPFSSATIRNEMGILEQRGFIEKTHSSSGRVPSEQGYRYYVDFLVGKMAIHPSDMQLIHQLFSREYSEMGELIRNSADILSNLTNYTAIVLGPNMQLNRLASFQLIPISARQVVAILVTTTGHVENHRFNLVTDVSASDIERVVAILNEKLVNLPLNEIKGRLPREVNELLQRHTSEFEAIQTLLTSVFHQTPQEKIVFSGQSHILNQPEFSQTSQIRDVIKLLEQRDDVFELVNDVPEGINVMIGDEISNNLFKDFSLITSTYKVDDQKAGVIALLGPTRMSYDRSIQVIDEVSKDLSHFLTHHYDEGENKKT
>NZ_CP023643.1|WP_029091157.1|1954571_1955141_+|nucleotide-exchange-factor-GrpE
MSEEIKKETVDETVDTTKETNETEEIINESEAETSEEVVEPSELEVLTEKYDELETRYLRLQADFDNSRRRQKIESASAAKFRSQSLVEKLLPVLDNFERAMATELAGEDTKSFLEGIEIVQRQLEAAMEAEGVEVIATVGETFDPNVHQAVMQDDDKAFDSNVVTAELQKGYKLKDRVIRPAMVKVNQ
>NZ_CP023643.1|WP_069118882.1|1955192_1957031_+|molecular-chaperone-DnaK
MSKIIGIDLGTTNSAVSVLEGGEAKIIPNPEGGRTTPSVVAFKDGERQVGEVAKRQMITNPHTISSIKRYMGTDHVENIDGKDYSPQEISAIILQYLKGYAEDYLGEAVTKAVITVPAYFNDAQRQATKDAGKIAGLEVERIVNEPTAAALAYGIEKTEEDQTVLVFDLGGGTFDVSILELGDGVFEVLATAGDNSLGGDDFDQAIIDYLVEEFKKENGIDLSKDKMASQRLKDAAEKAKKDLSGVSSTQISLPFITAGSNGPMHLEITLTRAKFDDITASLVERTVIPVRQAMKDSKLSASDIDQVILVGGSTRIPSVQDAVKKELGKEPHKGVNPDEVVAMGAAIQGGVITGDVKDVVLLDVTPLSLGIETMGGVLTTLIERNTTIPTSKSQVFSTAVDNQPAVDIHVLQGERPMAKDNKTLGRFQLSDIPAAQRGVPQIEVSFDIDKNGIVTVNAKDLGTGKEQNIVIKSSSGLTDEEIERMVKDAEANAEADAKHKEEVDTRNEADQLIFSVDKTLKDLEGKVDAEEVTKAEAARDELKTALEGEDFEDIKAKKDTLNEIVQNLSVKLYEEAAKAQQGAEGAEAGDANSDVVDAEFEEINDDEDKDKK
>NZ_CP023643.1|WP_069118881.1|1957157_1958105_+|DnaJ-domain-containing-protein
MANKDPYEALGVSKSATAQEIKKAYRKLSKQYHPDINKDAGADAKFKEISEAYEILSDDQKKAQYDQFGHTDPNAGFGGGGFGGGGAGFGGGGFEDIFESFFGGGRRRDPNAPRAGQDMQYTMRLKFREAIFGKEVEISYRREEINEKTKEREVKVKKLKLKVPAGVDDGQQMRVSNQGAAGYNGGPNGDLYVVFDVIPDEFFERHGDDIYAEVPITFTQAALGAEIEVPTLHGNVRLKIPAGTQNGTNFRLRGKGAPRLQRSGHGDQHIQVRVVVPQKLTDAQRKAIKELAKATDGDNANDGFFDKMRKAFKGE
>NZ_CP023643.1|WP_029091160.1|1958763_1959705_+|50S-ribosomal-protein-L11-methyltransferase
MDFIEVSVTTTHAAMDAISNVFMENGANGVAIEDSAEMTREHPQQFGEMYALDSEDYPNEGVVVKAYYTADEHENTDFEAIHELIKGLVQYDIDLGPIDWTLTEVKQEEWANAWKEFYHPVQVTDKLTIVPTWEEYTPHSADEHIIELDPGMAFGTGTHQTTRLCLEAVEKYVKAGDDVIDVGTGSGVLSILAAKLGAKSVLALDLDDVAVRAAQENIDYNKVDGVVEVTTGNLLEGIERNAEVVVANILADIILLFPNDVYRVLKPNGLFIASGIIEEKVDEVAAAIEAAGMTIIERDNKDDWFVLVARKEA
>NZ_CP023643.1|WP_029091161.1|1959706_1960453_+|16S-rRNA-(uracil(1498)-N(3))-methyltransferase
MQRYFIDSNVPESQKISIGIPHYHHIINVMRHVSGDQLIFVFNAGETYIVTIEEVEKETISCHLTERLEKTVELPIDVTLACGLPKGDKLDLIVQKTTELGIFSIQPFEAERSIVKWDEKKETKKRQRLQKIAQEAAEQSHRVHVPEILPLLTSKKLLLELAQYTHVFIADEEEAKINEQKVFKKLLNTMKINDKLLIITGPEGGLSRNEVTSYIEKGAISGSLGPRILRTETAPLYAMAAISYEFEL
>NZ_CP023643.1|WP_029091162.1|1960614_1960788_+|30S-ribosomal-protein-S21
MSKTVVRKNESLEDALRRFKRSVSKTGTMQEFRKREFYEKPSVKRKKKSEAARKRKF

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Crispr_ID: NZ_CP023643_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023643_6

1981881-1981991

Orphan

Consensus_repeat	Method
CCCATACTGTTTTCGTAAGCGAATAAATTCGCAACGAT	CRISPRCasFinder

1 spacers

WYL

The CRISPR arrays of NZ_CP023643_6

>merge|NZ_CP023643|6|1981881-1981991|CRISPRCasFinder
CCCATACTGTTTTCGTAAGCGAATAAATTCGCAACGATTTTAATACAAGGAGTGGTACTCGCTTGTGCTCCGTCCCATACTGTTCTCGTAAGCGAATAAATTCGCAACGAT

>NZ_CP023643|6|6|1981881-1981991|CRISPRCasFinder
CCCATACTGTTTTCGTAAGCGAATAAATTCGCAACGAT	TTTAATACAAGGAGTGGTACTCGCTTGTGCTCCGT
CCCATACTGTTCTCGTAAGCGAATAAATTCGCAACGAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023643.1\|WP_029091190.1\|1987263_1987968_+\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|366664
NZ_CP023643.1\|WP_029091176.1\|1974265_1975081_+\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|350160
NZ_CP023643.1\|WP_029091174.1\|1972710_1973154_+\|transcriptional-repressor	unknown	unknown	gnl\|CDD\|223806
NZ_CP023643.1\|WP_141690584.1\|1976428_1977163_+\|segregation/condensation-protein-A	unknown	unknown	gnl\|CDD\|234635
NZ_CP023643.1\|WP_069125876.1\|1983230_1984130_+\|YafY-family-transcriptional-regulator	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
NZ_CP023643.1\|WP_029091193.1\|1990169_1991480_+\|ribosome-biogenesis-GTPase-Der	unknown	unknown	gnl\|CDD\|234628
NZ_CP023643.1\|WP_029091187.1\|1984186_1984564_+\|effector-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|226231
NZ_CP023643.1\|WP_029091189.1\|1985731_1987162_+\|ATP-dependent-DNA-helicase-RecQ	unknown	unknown	gnl\|CDD\|223588
NZ_CP023643.1\|WP_069118871.1\|1975103_1976414_+\|diaminopimelate-decarboxylase	unknown	unknown	gnl\|CDD\|143501
NZ_CP023643.1\|WP_029091182.1\|1979313_1981125_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|380161
NZ_CP023643.1\|WP_029091188.1\|1984698_1985727_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|227291
NZ_CP023643.1\|WP_080712895.1\|1978584_1979235_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP023643.1\|WP_029091191.1\|1988103_1988787_+\|(d)CMP-kinase	unknown	unknown	gnl\|CDD\|234579
NZ_CP023643.1\|WP_029091192.1\|1988876_1990058_+\|30S-ribosomal-protein-S1	unknown	unknown	gnl\|CDD\|235851
NZ_CP023643.1\|WP_029091185.1\|1982923_1983172_+\|ferredoxin	unknown	unknown	gnl\|CDD\|224064
NZ_CP023643.1\|WP_069118867.1\|1982336_1982909_+\|ECF-transporter-S-component	unknown	unknown	gnl\|CDD\|226129
NZ_CP023643.1\|WP_069125873.1\|1977162_1977789_+\|SMC-Scp-complex-subunit-ScpB	unknown	unknown	gnl\|CDD\|234657
NZ_CP023643.1\|WP_069118900.1\|1973343_1974237_+\|site-specific-tyrosine-recombinase-XerD	unknown	unknown	gnl\|CDD\|274043
NZ_CP023643.1\|WP_069125875.1\|1981129_1981648_+\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|224523
NZ_CP023643.1\|WP_029091180.1\|1977760_1978489_+\|rRNA-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|224108

Protein	Function_ID	Function_description	E-value
NZ_CP023643.1\|WP_029091190.1\|1987263_1987968_+\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|366664	pfam01476, LysM, LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.	1.62435e-10
NZ_CP023643.1\|WP_029091176.1\|1974265_1975081_+\|purine-nucleoside-phosphorylase	gnl\|CDD\|350160	cd09009, PNP-EcPNPII_like, purine nucleoside phosphorylases similar to human PNP and Escherichia coli PNP-II (XapA). Human PNP catalyzes the reversible phosphorolysis of the purine nucleosides and deoxynucleosides inosine, guanosine, deoxyinosine, and deoxyguanosine. Patients with PNP deficiency typically present with severe immunodeficiency, neurological dysfunction, and autoimmunity. Escherichia coli PNPII, product of the xapA/pndA gene, catalyzes the phosphorolysis of xanthosine, inosine and guanosine with equal efficiency and has been referred to as xanthosine phosphorylase and inosine-guanosine phosphorylase. E. coli PNPII is also capable of converting nicotinamide to nicotinamide riboside, and may be involved in the NAD+ salvage pathway. It is one of two purine nucleoside phosphorylases found in E. coli, which also contains PNPI, which displays a different substrate specificity and belongs to a different subgroup of the nucleoside phosphorylase-I (NP-I) family than PNPII. NP-I family members accept a range of purine nucleosides as well as the pyrimidine nucleoside uridine. The NP-1 family includes phosphorolytic nucleosidases, such as purine nucleoside phosphorylase (PNPs, EC. 2.4.2.1), uridine phosphorylase (UP, EC 2.4.2.3), and 5'-deoxy-5'-methylthioadenosine phosphorylase (MTAP, EC 2.4.2.28), and hydrolytic nucleosidases, such as AMP nucleosidase (AMN, EC 3.2.2.4), and 5'-methylthioadenosine/S-adenosylhomocysteine (MTA/SAH) nucleosidase (MTAN, EC 3.2.2.16). The NP-I family is distinct from nucleoside phosphorylase-II, which belongs to a different structural family.	2.84783e-160
NZ_CP023643.1\|WP_029091174.1\|1972710_1973154_+\|transcriptional-repressor	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	2.27621e-48
NZ_CP023643.1\|WP_141690584.1\|1976428_1977163_+\|segregation/condensation-protein-A	gnl\|CDD\|234635	PRK00104, scpA, segregation and condensation protein A; Reviewed.	7.42363e-91
NZ_CP023643.1\|WP_069125876.1\|1983230_1984130_+\|YafY-family-transcriptional-regulator	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	1.22537e-63
NZ_CP023643.1\|WP_029091193.1\|1990169_1991480_+\|ribosome-biogenesis-GTPase-Der	gnl\|CDD\|234628	PRK00093, PRK00093, GTP-binding protein Der; Reviewed.	0
NZ_CP023643.1\|WP_029091187.1\|1984186_1984564_+\|effector-binding-domain-containing-protein	gnl\|CDD\|226231	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown].	1.94439e-09
NZ_CP023643.1\|WP_029091189.1\|1985731_1987162_+\|ATP-dependent-DNA-helicase-RecQ	gnl\|CDD\|223588	COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair].	1.53671e-142
NZ_CP023643.1\|WP_069118871.1\|1975103_1976414_+\|diaminopimelate-decarboxylase	gnl\|CDD\|143501	cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.	5.2172e-177
NZ_CP023643.1\|WP_029091182.1\|1979313_1981125_+\|HAMP-domain-containing-protein	gnl\|CDD\|380161	NF033092, HK_WalK, cell wall metabolism sensor histidine kinase WalK. This model describes WalK as found in Staphylococcus aureus (sp\|Q2G2U4.1\|WALK_STAA8). A shorter version, as found in Streptococcus pneumoniae, called WalK(Spn) or VicK, is not included. WalK is part of a two-component system and works with partner protein WalR.	4.30918e-89
NZ_CP023643.1\|WP_029091188.1\|1984698_1985727_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|227291	COG4955, COG4955, Uncharacterized protein conserved in bacteria [Function unknown].	3.56475e-43
NZ_CP023643.1\|WP_080712895.1\|1978584_1979235_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.75014e-78
NZ_CP023643.1\|WP_029091191.1\|1988103_1988787_+\|(d)CMP-kinase	gnl\|CDD\|234579	PRK00023, cmk, (d)CMP kinase.	5.32318e-115
NZ_CP023643.1\|WP_029091192.1\|1988876_1990058_+\|30S-ribosomal-protein-S1	gnl\|CDD\|235851	PRK06676, rpsA, 30S ribosomal protein S1; Reviewed.	1.14531e-170
NZ_CP023643.1\|WP_029091185.1\|1982923_1983172_+\|ferredoxin	gnl\|CDD\|224064	COG1141, Fer, Ferredoxin [Energy production and conversion].	9.56651e-15
NZ_CP023643.1\|WP_069118867.1\|1982336_1982909_+\|ECF-transporter-S-component	gnl\|CDD\|226129	COG3601, COG3601, Predicted membrane protein [Function unknown].	4.99271e-44
NZ_CP023643.1\|WP_069125873.1\|1977162_1977789_+\|SMC-Scp-complex-subunit-ScpB	gnl\|CDD\|234657	PRK00135, scpB, segregation and condensation protein B; Reviewed.	1.03718e-71
NZ_CP023643.1\|WP_069118900.1\|1973343_1974237_+\|site-specific-tyrosine-recombinase-XerD	gnl\|CDD\|274043	TIGR02225, Tyrosine_recombinase_XerD, tyrosine recombinase XerD. The phage integrase family describes a number of recombinases with tyrosine active sites that transiently bind covalently to DNA. Many are associated with mobile DNA elements, including phage, transposons, and phase variation loci. This model represents XerD, one of two closely related chromosomal proteins along with XerC (TIGR02224). XerC and XerD are site-specific recombinases which help resolve chromosome dimers to monomers for cell division after DNA replication. In species with a large chromosome and with homologs of XerD on other replicons, the chomosomal copy was preferred for building this model. This model does not detect all XerD, as some apparent XerD examples score below the trusted and noise cutoff scores. XerC and XerD interact with cell division protein FtsK. [DNA metabolism, DNA replication, recombination, and repair].	1.51738e-152
NZ_CP023643.1\|WP_069125875.1\|1981129_1981648_+\|acyl-CoA-thioesterase	gnl\|CDD\|224523	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism].	2.63759e-53
NZ_CP023643.1\|WP_029091180.1\|1977760_1978489_+\|rRNA-pseudouridine-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	8.2513e-104

>NZ_CP023643.1|WP_069125875.1|1981129_1981648_+|acyl-CoA-thioesterase
MKMNKTCTESFTAKTSRVFPFDINAFDTLFGGNLMSMVDDIASVSASRHSQRNCVTASTDNVSFYAPIHLNDSVCLQSYVCYTGRTSMEIFIKVVKENMMTSERELAATAFMTFVAIGEDGKPTEVPTVEPVTEEQKFICAGGEARAIERKKRMIEQKEMASQLGLARPWEQ
>NZ_CP023643.1|WP_029091182.1|1979313_1981125_+|HAMP-domain-containing-protein
MKQFFISVVGKLWVTIILLSTIGLTIIVLLLIQIFIQSNLKDNKQLLQQTTTQIVQMVDKHYDNKAIQTQALDMLPKNMNALIVFPDEKELFHSANEHALSTKMLEKLREEIKGNSNKTNFQKIELQDEQRGEKISLYVSSASFESPNGKSKGDIYVFKSNQDIYKSVVTMSQTVAVFYFLSIIAVTVFALFLSTRIAAPIRAMRNAASQIASGDFDIKVQIVSNDEIADLGRSFNRMGRDLKANIQTIEAEKDQLSGLLGAMADGVIRFSREGKMMLKNPPADIFLSKWQASTDNLDKSAIPPVLADAIQEALASQSTQEVEIDIDNYSYAAVLTLIRDESGELNVIVITRDYTELKRMIKMRIDFISNVSHELKTPLSMMTGYSEAIIDGVAESKEEIIEFSTIINEEANRLARLVNDLLDVTRMESGFVDLNLNFQELRPLVEKVLYNYENFAMEHKVEMISEFETADFVYNFDADRMHQVFVNLISNALRYASDLEHGGQVTIKQYVTDYFVVLDIIDNGPGITAEDLPYVFDRFYKADKARKRHKTVGTGIGLAIVKSIIEAHNGRISVLSNYGEGTTFRIELPLLAKSTLTIDKGEK
>NZ_CP023643.1|WP_080712895.1|1978584_1979235_+|response-regulator-transcription-factor
MYLERENYNVTQADNGISALDLALNNDYDIILLDIMMPGKDGLEVLKELRQVKKTPVILLTAKAEEINVIDGFNTGADDYVAKPFSPREIVLRVKSLLRRVNENPQQTMGSENSDVVVYHELYIDNDAHRVTVANNTVSLTPKEYDLLIFLAKAPNKVFEREQLLKEVWQYDYFGDLRTVDTHIKRLREKLYKHSEEVSKMIVTVWGIGYKFESRD
>NZ_CP023643.1|WP_029091180.1|1977760_1978489_+|rRNA-pseudouridine-synthase
MERLQKVIANAGIASRRKAEELITNGRVTVNGKTVREQGIKVTGSDKVEVNGVPLSKEEHRYFVLYKPRGVLSASSDDKKRKVVTDYFDMIPERVYPVGRLDYDTSGLIVLTNDGDFANILMHPKYKVEKTYVARVKGIPTRETIKQLQDGVRIDGRKTAKARAHFMSGDKGKDKAIVELTIHEGRNHQVRKMFEAVGHPVQKLKREQYGMLVLGNLAPGEWRELSVHEVKQMYALATTGKK
>NZ_CP023643.1|WP_069125873.1|1977162_1977789_+|SMC-Scp-complex-subunit-ScpB
MNFAKEQAIVESLLFAAGDEGLSLKQLSEVMSIQRDVLLVVLEKLQKKYEDDETSGIQLTELANSYQLTTKAKFADYLQKLVDSPHVSALTQASLETLAIVAYKQPVTRMEIEEIRGVNADGPVRTLVTRGLIEEKGRSEKVGRAMLYGTTKEFLDYFGLANLKGLPDVSEEWENDKIQEEMDLFFKTFQDTTIKGRVEDGKTTKSNS
>NZ_CP023643.1|WP_141690584.1|1976428_1977163_+|segregation/condensation-protein-A
MTFKTAVFEGPLDLLLHLIKELEIDIYDIPVAQITDQYLEYIHTMKELQLDIAGDYIVMAATLLAIKSRTLLPKKIVEEDLLVEDYEGEDPREELVEQLVAYKQFKEVAVDLKDKEKERQQLFTKAPLPLIEEVALPETEEERVSMADLLGAFHKMMRRKKLAKPLQTTIARSEISIEERMNDMIELISRNKEAVMFETLFEENSRSMLVVSFLALLELMKRQTITVEQEGSFAGLMVSLKERQ
>NZ_CP023643.1|WP_069118871.1|1975103_1976414_+|diaminopimelate-decarboxylase
MELHGTSTINTQNHLEIGGVDTVTLAKEYGTPLYIYDVAAIRQHARGFKETFEKAKVSAQVAYASKAFSSIAMYELINEEGLSLDVVSAGELYTAVKAGFPAERIHFHGNNKTEAELRYAIDQNVGCYVIDNFHEIELLNRLAKELGTKVVALLRVTPGVGAHTHEFITTGQDDSKFGFGLTNGQTEEAIQRVLATDTITLKGVHCHIGSQIFEMDGFIAAADRIIDQMVIWNEKYNYKTEVLNLGGGFGIHYTDEDQPLEPETYVANIITEVQAKISANQLAMPEIWIEPGRSLVGEAGTTLYTVGSSKDVPDVRRYVAVDGGMGDNIRPALYDAKYSAVLANKMADQADTTVSIAGKYCESGDMLIWDIPLPNPQPNDLLAIFSTGAYSYSMASNYNRVPRAAVVFVEHGEHQLVVKRETFEDIIQNDLHLTKR
>NZ_CP023643.1|WP_029091176.1|1974265_1975081_+|purine-nucleoside-phosphorylase
MYEQALESKKYIEDKIGSLPTVGLILGSGLGVLADKIANPVVIPYKDIPHFPVSTVEGHAGQLVIGELQGKVVIAMQGRFHFYEGYTMQQVTFPVRVMKLLGVEKMIITNAAGGINETFTPGTLMLLTNQINFTGTSPLIGKNDERFGPRFPDMTTVFDKKMLEIARQSATKLSIDSVREGVYLGLTGPAYETGSEIHMMRGMGADAVGMSTVPEVIVAAHMSIPVLGISCITNLAAGILDQPLNHAEVIEVSNRVQAEFLAYMEDIIASI
>NZ_CP023643.1|WP_069118900.1|1973343_1974237_+|site-specific-tyrosine-recombinase-XerD
MKNSIEDFVHYIRIEKGLSDNTLLAYQRDLTAYLTFLIEQRHINDLSDITREDVVGFMGLMKEEGKSARSIARYMASIRSFHHFLLIDQKSTTDPTTQIATPKQAQTLPAILHVDEVDALLATPDKTTALGLRDAAMLELLYATGLRVSELITLKLSDLHLNMGFIQTIGKGHKERIIPLGQTATTVINEYLELSRSQLYREKYKNDTLFLNFHGRPMTRQGFWKNLKKMTLQAGIKKEITPHTLRHSFATHLLENGADLRSVQELLGHSDIATTQIYTHVTKSRLADVYQQFHPRA
>NZ_CP023643.1|WP_029091174.1|1972710_1973154_+|transcriptional-repressor
MGTRMEGIKKQLHREKYKLTPQREATLQVLIENEKAHLSAEEVYLLVKDKAPDTGLATVYRTLDLLSELNILDKINFGDGVARYEIRKEGVKHFHHHLICLECGEVNEIQEDLLSDVEEKVASKYNFLVKDHRLIFHGICEKCQKIK
>NZ_CP023643.1|WP_069118867.1|1982336_1982909_+|ECF-transporter-S-component
MSNSKVRMLVSVSMLSALSYLLTFIKFPLPVFPDFLTIDFSDIPAMIGAFIFGPLAGTLVLLIKNIINYITTGSPVGFPVGQVANFVAGMLYVMPMYYIYRHFKGSKRGLLVGIGTGTLAMTLFMSLFNYIILLPLYLKLLNFDLGVSFAKAVVVSIMPFNLIKGVLVGYLFMLMFGRLKKWIERQQLQR
>NZ_CP023643.1|WP_029091185.1|1982923_1983172_+|ferredoxin
MALYTIIDKSTCIACGMCAVCAPTTYDYDDEGIAYVVHDDNTGTQAVAVDIEEDVIEAEMSCPSASVRTAESSFQGDPDRFE
>NZ_CP023643.1|WP_069125876.1|1983230_1984130_+|YafY-family-transcriptional-regulator
MRIERLFNILLYLLNHQKVTAAQLSEVFQVSKRTIYRDIDTLSSSGVPLFTVLGVNGGIQLMENYRLNRFTFSEAEKNILIQSLNTQHTLIETDKATELVYKINLLQEGEQTSAFQVNFTEATLHRGSIERDVQNKLSAIQTAMSVGEKIQINYIAGDGTTTKRIVQPLELLLKDGSWYLSAYCELRKSQRLFKLTRIRSFEHLPLKNDYLSKDDLMVETPNLTTIELQFEKNQLGKLYDYFLEKEMSLCDTCINVRFKYDSRKNILPFLLMFGSNVKVIAPIALKNSYQDEVKKMNES
>NZ_CP023643.1|WP_029091187.1|1984186_1984564_+|effector-binding-domain-containing-protein
MKKQIVYGEKIRTNNQTFAGIAELWQRVAKRGDKAPLYAVYHNYESDEKGDYDLLIGTTIPDILLSDITLGKNNYLTFAVDTKKEQGVYEKWCEIWATDLKRLYTTDYEYYDVNGEITIFIAVKD
>NZ_CP023643.1|WP_029091188.1|1984698_1985727_+|helix-turn-helix-domain-containing-protein
MNDYQRVILDLIRQLNGSKKLKQVTDILQGVKTSQNMVDLFLYRIQPFFGVFENKAFFDLKMTCDNLITDGYIILKSEDRLALSSLGLSTVSNFTLQANYQNVNGWRWHRRLPVFALSLQLATQMTANRYHEIAHYFPIVRDTTIQALCKRWWLGLEKDDEQVLAKNYHDELTSLLDSLTVSPEIVVDRLTGGQTIGLTAEQSANKHHLEKNTYDMQWLEALSQMMFLLERYPKSWPLLSQLLLDRPVAQLTESAQITYQLLLDGTSVADIQQQRRLKKSTIVDHYVQLIGLEIMPLDAFVNKANREYYEANKKMATSLKEARMNMPELSYDTLKLCLVSGR
>NZ_CP023643.1|WP_029091189.1|1985731_1987162_+|ATP-dependent-DNA-helicase-RecQ
MLENDLKTYLGFDEFRLGQKEVVEAAVAGEDTFVMLPTGSGKTVCFQLAGYLREGLVVIISPLLSLMQDQVERMKVYGEKRVVALNSFLNANEKTTILNQLERYKFVFISPEMIQQEHVLAAFQRQKIGLFVIDEGHCIAQWGPDFRPDYLQLGAVRETLNYPVTMVLTATATETVRAETQKVLNLKNMKQFIYSVNRENIAYKVITCEQRKDKDTELLKLVKELEGPGIIYFSSRQKCQDMSLLLSERLNLDVAYYHGRMDPADRIAIQQQFTHHQLDIICATSAFGMGIDVPDIRFVIHYHPAQNIESFVQEAGRAGRDGKPSLSISLCHQESDYYLAQSLSVRDLPDYNTILNPQSYTREALENNWVTDTQWRFLKTYKEMGFNPNAIWEVVQARQTLKKEQIDAYFKWLQTTQCRRDRLLRFFGEADIHQEFQCCDNCDLDESIYHKVANDFTKVVKNDWKKTLWEMFVKKM
>NZ_CP023643.1|WP_029091190.1|1987263_1987968_+|LysM-peptidoglycan-binding-domain-containing-protein
MSEFNNDDFKREEEDTDSEISRASRRHHRKKNVIFRYPFLSTLLIAIIIIPLACLITYAYVHENAKNNNDVVTDTSSEDSSVVIEKNTSAASKETVSSSEKAKEEAKKAKAEKEKQAKADEEKAESERIVKEEADAKAKAESESQAKAEELAKTEAEKERLAQEKAESEEKASSESEKQETKSYTVKAGDTLYNIALTHYGSGNADNQQLIRSANGISGNSIPVGTVLTIPPNN
>NZ_CP023643.1|WP_029091191.1|1988103_1988787_+|(d)CMP-kinase
MSGICIAIDGPAAAGKSTVAKIVANRLGYIYLDTGAMYRTLTYAALKAGIELSNETQLKMLMPKINITFSPDEKNGGQRVFLNGEDVSDAIRSESVTSNVSEVAMVLAVREEMKARQLAFAENGGVVMDGRDIGTNVLPNAELKIFLLASVDERAIRRFNENKAKGYKHVPLDVLKQEIEARDHLDYTREHAPLKKAEDAIELDTTSLSIEDVSTRIFTLAQAKIND
>NZ_CP023643.1|WP_029091192.1|1988876_1990058_+|30S-ribosomal-protein-S1
MTEEMFSFEIAELKKGDTVVATVSSVEDKKVYVSIPNAKQDGLLPASELSVEPVEDAHTLVKVGDELTLVVTRVEDDLIVLSKTKAAEGEVWTDLKEKFENGTIFDATITEVVKGGLVANVGIRAFIPGSLVTDHFVEDFSAYKGETLAVKIVEFVQEKGRVVLSHRAIVEAEKAVKQAELFATINEGDVVEGTVARLTNFGAFVTVNGVDGLVHISQLANKRVSNPSEVVAVGDEVKVKVLSVDTEKNRLALSIKATLPQPWDNISEQVAPDDVLEGTVARLTTFGAFINILPGVDGLVHISEIAHERIGTPQEVLSEGQAVTVKVLSVDTAERRIGLSIKALSDAPVTEEKAKSTATKEVVESYKMPEEETGFSLGDLLGADKLKEMDLKD
>NZ_CP023643.1|WP_029091193.1|1990169_1991480_+|ribosome-biogenesis-GTPase-Der
MAKPVIAIVGRPNVGKSTIFNRIVGERISIVEDVAGVTRDRIYSSSEWLTQQFNVIDTGGIDIGDEPFLEQIRQQAEIAIEEADVIIFIVNGREGVTDADETVAKILYRSKKPVVLAVNKVDNPEMRSEIYDFYSLGFGEPYPISGSHGLGIGDLLDKAIASFPEKEEIEYEEGTIKFSLIGRPNVGKSSMINAMLGEERVIVSDIAGTTRDAIDTPHTFDDQEYVMIDTAGMRKKGKVYENTEKYSILRALRAIERSDVVLVVINAEEGIREQDKKIAGYAHEAGRGVIIVVNKWDTLEKNDKTLDKFTTDIREQFVFLDYAPILFVSAKTRQRLVKLFPIINEVYNNHSMRVQSSVLNEVITDAVAVNPAPQDKGQRLRIYYATQVAIQPPTFVVFVNNPELMHFSYQRFLENRIRDVFTFEGTPIRLISRQRK

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Crispr_ID: NZ_CP023643_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023643_7

2388417-2388532

Orphan

Consensus_repeat	Method
TGTCTATTTAGAACTTAAATTTCAGGTCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP023643_7

>merge|NZ_CP023643|7|2388417-2388532|CRISPRCasFinder
TGTCTATTTAGAACTTAAATTTCAGGTCTCACTGTAACTTTATGCGCGTCTGAAATTTTGATAAAGTGAGCTTAGATTTCTAGAGGCTGTCTATTCAGAACTTAAATTTCAGGTCT

>NZ_CP023643|7|7|2388417-2388532|CRISPRCasFinder
TGTCTATTTAGAACTTAAATTTCAGGTCT	CACTGTAACTTTATGCGCGTCTGAAATTTTGATAAAGTGAGCTTAGATTTCTAGAGGC
TGTCTATTCAGAACTTAAATTTCAGGTCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023643.1\|WP_069125586.1\|2381077_2382694_+\|DAK2-domain-containing-protein	unknown	unknown	gnl\|CDD\|274671
NZ_CP023643.1\|WP_069119993.1\|2394936_2395872_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213234
NZ_CP023643.1\|WP_069124469.1\|2396794_2397754_+\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|225382
NZ_CP023643.1\|WP_069125574.1\|2378386_2380024_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|213250
NZ_CP023643.1\|WP_029091961.1\|2393596_2394589_+\|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl\|CDD\|236686
NZ_CP023643.1\|WP_069125824.1\|2398677_2399904_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NZ_CP023643.1\|WP_069125573.1\|2389290_2389992_+\|ribonuclease-III	unknown	unknown	gnl\|CDD\|234633
NZ_CP023643.1\|WP_096879646.1\|2390008_2393572_+\|chromosome-segregation-protein-SMC	unknown	unknown	gnl\|CDD\|274008
NZ_CP023643.1\|WP_069125822.1\|2399903_2400170_+\|DUF2087-domain-containing-protein	unknown	unknown	gnl\|CDD\|378279
NZ_CP023643.1\|WP_029091972.1\|2380188_2380377_-\|50S-ribosomal-protein-L28	unknown	unknown	gnl\|CDD\|234736
NZ_CP023643.1\|WP_069119984.1\|2384930_2385506_+\|transcription-factor-FapR	unknown	unknown	gnl\|CDD\|179847
NZ_CP023643.1\|WP_029091967.1\|2385535_2386546_+\|phosphate-acyltransferase-PlsX	unknown	unknown	gnl\|CDD\|235414
NZ_CP023643.1\|WP_096879647.1\|2397798_2398497_+\|ABC-2-family-transporter-protein	unknown	unknown	gnl\|CDD\|226218
NZ_CP023643.1\|WP_069125827.1\|2395858_2396647_+\|ABC-2-family-transporter-protein	unknown	unknown	gnl\|CDD\|226953
NZ_CP023643.1\|WP_069119988.1\|2387474_2388221_+\|3-oxoacyl-[acyl-carrier-protein]-reductase	unknown	unknown	gnl\|CDD\|235500
NZ_CP023643.1\|WP_036027516.1\|2382766_2384827_+\|ATP-dependent-DNA-helicase-RecG	unknown	unknown	gnl\|CDD\|236794
NZ_CP023643.1\|WP_069119986.1\|2386538_2387474_+\|ACP-S-malonyltransferase	unknown	unknown	gnl\|CDD\|223408
NZ_CP023643.1\|WP_029091971.1\|2380642_2381005_+\|Asp23/Gls24-family-envelope-stress-response-protein	unknown	unknown	gnl\|CDD\|224221
NZ_CP023643.1\|WP_069120345.1\|2376526_2377135_+\|thiamine-diphosphokinase	unknown	unknown	gnl\|CDD\|153431
NZ_CP023643.1\|WP_029091964.1\|2388968_2389205_+\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|179197

Protein	Function_ID	Function_description	E-value
NZ_CP023643.1\|WP_069125586.1\|2381077_2382694_+\|DAK2-domain-containing-protein	gnl\|CDD\|274671	TIGR03599, YloV, DAK2 domain fusion protein YloV. This model describes a protein family that contains an N-terminal DAK2 domain (pfam02734), so named because of similarity to the dihydroxyacetone kinase family family. The GTP-binding protein CgtA (a member of the obg family) is a bacterial GTPase associated with ribosome biogenesis, and it has a characteristic extension (TIGR03595) in certain lineages. This protein family described here was found, by the method of partial phylognetic profiling, to have a phylogenetic distribution strongly correlated to that of TIGR03595. This correlation implies some form of functional coupling.	0
NZ_CP023643.1\|WP_069119993.1\|2394936_2395872_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213234	cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA. NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.	1.7923e-86
NZ_CP023643.1\|WP_069124469.1\|2396794_2397754_+\|IS30-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	6.52868e-50
NZ_CP023643.1\|WP_069125574.1\|2378386_2380024_+\|hypothetical-protein	gnl\|CDD\|213250	cd03283, ABC_MutS-like, ATP-binding cassette domain of MutS-like homolog. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange.	7.81511e-54
NZ_CP023643.1\|WP_029091961.1\|2393596_2394589_+\|signal-recognition-particle-docking-protein-FtsY	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	0
NZ_CP023643.1\|WP_069125824.1\|2398677_2399904_+\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	1.2448e-10
NZ_CP023643.1\|WP_069125573.1\|2389290_2389992_+\|ribonuclease-III	gnl\|CDD\|234633	PRK00102, rnc, ribonuclease III; Reviewed.	1.05776e-111
NZ_CP023643.1\|WP_096879646.1\|2390008_2393572_+\|chromosome-segregation-protein-SMC	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0
NZ_CP023643.1\|WP_069125822.1\|2399903_2400170_+\|DUF2087-domain-containing-protein	gnl\|CDD\|378279	pfam09860, DUF2087, Uncharacterized protein conserved in bacteria (DUF2087). This domain, found in various hypothetical prokaryotic proteins and transcriptional activators, has no known function. Structural modelling suggests this domain may bind nucleic acids.	1.57811e-25
NZ_CP023643.1\|WP_029091972.1\|2380188_2380377_-\|50S-ribosomal-protein-L28	gnl\|CDD\|234736	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed.	3.32281e-18
NZ_CP023643.1\|WP_069119984.1\|2384930_2385506_+\|transcription-factor-FapR	gnl\|CDD\|179847	PRK04424, PRK04424, transcription factor FapR.	2.68936e-88
NZ_CP023643.1\|WP_029091967.1\|2385535_2386546_+\|phosphate-acyltransferase-PlsX	gnl\|CDD\|235414	PRK05331, PRK05331, phosphate acyltransferase PlsX.	2.63688e-177
NZ_CP023643.1\|WP_096879647.1\|2397798_2398497_+\|ABC-2-family-transporter-protein	gnl\|CDD\|226218	COG3694, COG3694, ABC-type uncharacterized transport system, permease component [General function prediction only].	7.39979e-12
NZ_CP023643.1\|WP_069125827.1\|2395858_2396647_+\|ABC-2-family-transporter-protein	gnl\|CDD\|226953	COG4587, COG4587, ABC-type uncharacterized transport system, permease component [General function prediction only].	9.14338e-14
NZ_CP023643.1\|WP_069119988.1\|2387474_2388221_+\|3-oxoacyl-[acyl-carrier-protein]-reductase	gnl\|CDD\|235500	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated.	1.1108e-128
NZ_CP023643.1\|WP_036027516.1\|2382766_2384827_+\|ATP-dependent-DNA-helicase-RecG	gnl\|CDD\|236794	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.	0
NZ_CP023643.1\|WP_069119986.1\|2386538_2387474_+\|ACP-S-malonyltransferase	gnl\|CDD\|223408	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism].	1.12001e-113
NZ_CP023643.1\|WP_029091971.1\|2380642_2381005_+\|Asp23/Gls24-family-envelope-stress-response-protein	gnl\|CDD\|224221	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown].	2.40874e-30
NZ_CP023643.1\|WP_069120345.1\|2376526_2377135_+\|thiamine-diphosphokinase	gnl\|CDD\|153431	cd07995, TPK, Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.	3.32921e-73
NZ_CP023643.1\|WP_029091964.1\|2388968_2389205_+\|acyl-carrier-protein	gnl\|CDD\|179197	PRK00982, acpP, acyl carrier protein; Provisional.	1.06347e-24

>NZ_CP023643.1|WP_069119988.1|2387474_2388221_+|3-oxoacyl-[acyl-carrier-protein]-reductase
MELTNKVAIVTGASRGIGQEIAYKLASLGAKIVVNYAGNVKAADETVAKIKADYNTEAIAVQANVADEDDVKRLFKETLDTFGGIDILINNAGITRDNLLMRMKAEEFDDVINANLRGTFLCLKAAARPMMKKRQGTIVNMTSVVGITGNAGQANYVASKAGVIGLTKTAARELAPRGIRVNAVAPGFIDTDMTDVLPEEVKSGMLSQIPLGAMGNTKNVADVVAFLVSDASAYMTGQTLSVDGGMSM
>NZ_CP023643.1|WP_069119986.1|2386538_2387474_+|ACP-S-malonyltransferase
MSKLAFVFPGQGSQIIGMGMDAYAASPIAKKIFDDANALLPFDLVDIIQNGSDEDLKASRVAQPALVTTSSALLALVKEAGITADYVAGHSLGEYSALVAANVLTSAEAAQLVNKRGELMEDAATGAMAAVMGTSEADLEAILETARQQSGEIVQLANLNCPGQIVISGSVAGIEAAQVAAKEAGVKRVIPLKVSGPFHSELMAPAAEAFASLLGTATFSDASTPVITNVDATPTTLAADFKVKLEQQLTAPVQWINTMAYLIEQDVDTIIEIGPGKVLAGLMKKMDRSVTVHNVQDLETLEATLAILGGK
>NZ_CP023643.1|WP_029091967.1|2385535_2386546_+|phosphate-acyltransferase-PlsX
MKIAIDAMGGDHAPQSTVEGVMLAAKKHSHVTFQLYGDKVKMAPYLEQLSNVEIVHTEEKIESTDSPVEAVRKKKQASMVLAAKAVKDGEAEACISAGNTGALMSAGLFVVGRMKGIKRPALAPTIPTVDGSGFVLLDAGANADAKPEHLLQFGMMGSAYVSAVKKIERPRVGLLNIGTEHNKGTDLTKDAFALLDASSVINFVGNVEARDLLNGVADVVVTDGFTGNMVLKTIEGTAGNLMKMIKGAMTATPLSKLGALTMRKGIYEIKDMMDYSNYGGACLFGLAGTVVKAHGSSNAHAIATTVTQAIQMVEGNIIGNINSALQQTKEEETTNE
>NZ_CP023643.1|WP_069119984.1|2384930_2385506_+|transcription-factor-FapR
MRKHAKKDRQRLLVETIERNPFTTDDMLATQFNVSVQTIRLDRMEIGIPELRKRVEDVANRQFQNEVRSLPLEDIIGDVIDLELDKRAISIFTIEEEHVFQRNKIARGHYLFAQANSLAVAVMGSDSALTAQANVKFVKSAQLGDRVICKVKVDEKSIGHTIRIVKVESYVDNHVVLKGTFEMYPEADSQE
>NZ_CP023643.1|WP_036027516.1|2382766_2384827_+|ATP-dependent-DNA-helicase-RecG
MKVDLANAPIKFVKGIGPSAAEKLERLHIETVADMLGYFPFRYENNESVDLSQAAHDTRVNVIGEIVTPAMVAYFGPKRNRLTFKLKVDHLVVQITFFNQAYLKSKLNVGEQIRVSGKWDRARQAISASKYFLVSGSETESDEKKLEPVYHMTEGLKQSQFQKWLKTTWEAYHEQIPELLPESLRQHYQLIDSHDAYEAIHYPTDPGVLLQARRRYTYEELLLFQLKMQLMRQRDKEQSGGISIQYDVQELRRYIASLPFELTGAQKRVVNEICGDMRSVTHMNRLLQGDVGSGKTVVASIAMFSAINAGFQAALMVPTEILAEQHFAELTRLLTPFNISVALLTGSTKKKDRVQLHEQLANGSLDVLIGTHALIQEDVVYHRLGLVVTDEQHRFGVNQRRAFREKGEQPDVLFMTATPIPRTLAITAFGEMDVSVINELPAGRKPIVTQWFKHEQMPDVLAFTRNEIASGRQIYMVAPLIEESENMDLQNAFDLHQQMQQYFGDKIPIGLMHGRLKSAEKEAVMQAFEAGDIKMLVTTTVIEVGVNVPNASTMIIYDAERFGLSQLHQLRGRVGRGGYQSYCYLVADPKTDNGKERMQIMCESNDGFVISQRDLELRGAGDFFGNKQSGIPQFKVADLVEDYRVLEVARDDAMAIVKEKRFKTKEYQALAAAVEHQLAVEAGQLD
>NZ_CP023643.1|WP_069125586.1|2381077_2382694_+|DAK2-domain-containing-protein
MIAQGATQLAANAEYVDSLNVFPVPDGDTGSNMSMTLTAGAEEVLKHESATVAIVGKHLSKGLLMGARGNSGVILSQLFRGFSKTIEDKEEINASGLAQAFDNGVKTAYKAVMKPVEGTILTVARESAEAGIKAVNNGVEDVVELMAIITEAGERSLAGTPDLLPVLKEVGVVDSGGQGLQIVYQAFLAELKGEAQATPLQPTSLSNLVTIEHENAVTDYMNPEDIKFGYCTEIMVQINNPGEKAFNEDQFRNTLADYGDSLIVIADDEIAKVHVHSNTPGQVIDYGQSFGPLLKIKVDNMREQNSDLQGKKAPAATPKKDVAVIAVSSGAGLDEIFKSLNVDIIVSGGQTMNPSTADLLRAVEQANAKHVIILPNNKNIIMAADQAVEMSETTQIAVVKSKTIQQGLAACFAYMPDETFENNQAEMNEALESVCSGSITTAVRDTEIKGVKIVKDEFIGIVEGTIVLSEKARDEAAFNTLVQMIDEDTEIVTIITGEEATIEDAEAIAERIENKFEDVEIEIKEGNQAVYPYLFSVE
>NZ_CP023643.1|WP_029091971.1|2380642_2381005_+|Asp23/Gls24-family-envelope-stress-response-protein
MSIEIETKLGQIDIADEVIATIAGDVASSQVGVVGMTSKKNIRDSFTDLLKKENNSKGVVVSRNDKGYVVDVYVVVTYGVKISEVARNIQENIKYNLAKQLNIQAEEINVYIQDVRLMID
>NZ_CP023643.1|WP_029091972.1|2380188_2380377_-|50S-ribosomal-protein-L28
MAKQCVITGRKTSTGNRRSHALNANRRTWKANLQKVRILVDGKPKKVWVSTRALKSGKVERV
>NZ_CP023643.1|WP_069125574.1|2378386_2380024_+|hypothetical-protein
MVFWLILSAIVLAQSAHNLFVKRKCKKRSFRFWDKDYHNQHLVTISDIKHYYENHHNDNCSLDVDETTWSDLELDRLFNRINYCHTSIGEEYLYNNIKKRESVIDEALIEKLETDKCSRQRLTQMFQRTGYLEGSDTSAFFSRRLAPHIKKRYLYCATLPIICFLLLLISMKVWLLTTIAVSLFNVFYFYRTKLTLEYELNRVFYLARLLKGSALYIKWKKSANLTLSYKRLLSFRLLAFFFNRNSLDGGINLFNVFRGVFLFDLILYNFMLGSIAKKQSDVAIIWHALAKLDINISVCKYRETLSFYAIPVFSDVYRFLFKEMVHPLTEEGVPNSLTWNDNIILTGTNSAGKSTFIKALALNVILAQAINTVVAEKAVLNKIVVQTSMAIKDDLLTGESFFVAETKSIRRLLTLVAKKQPTLVIMDEILKGTNANERISASLALMKWFNQFDELKVCIATHDLMLAEVGMRGFVNYHFSNKVVGEQIEFDYKLQKGISKTRNAIGILAAYDFPAEVVMEAKRISKLIDSVGGIDNVVYRRTYIK
>NZ_CP023643.1|WP_069120345.1|2376526_2377135_+|thiamine-diphosphokinase
MSNVPDLTPYKDDYWVGIDRGAFRLLEMGITPKAAMGDFDSLSSKELAFVRDNVVFVEQYPAEKDETDAMLGITYALNQKADEILVFGATGGRMDHTLANLFMLTYESYQAAIPVTTFVDKQNTLKMYQPGRYELEKQDKMKYIAFTVVSAEVTGLTLEGFKYPLNNATYPFGSALSSNEFVDEHGVLSFSEGLILMSQSHD
>NZ_CP023643.1|WP_029091964.1|2388968_2389205_+|acyl-carrier-protein
MSENIFDKVKEIVIDRLDVDESKVTKEASFKDDLEADSLEIVELVMEFEDVFDTEISDEASKQILTVGDAVKYIEENA
>NZ_CP023643.1|WP_069125573.1|2389290_2389992_+|ribonuclease-III
MKTLKELQERIQISFKQEALLEQAFTHASYVNENRSKGSKHYERLEFLGDAVLELTVSDYLFNRFPERPEGQLTKLRAACVCEGALVVYAKELNLSDYFRIGRGEENAGGRTRDALVADIFEAFIGAMYLSEGIDCVRSFLGKVIFPKIDDGTFEANNDYKTLLQEWLQKDGDISISYEILSENGPAHDKAFQVRLVVNGEPQSIGEGRTKKTAEQSAAQAALASYQSQEKNS
>NZ_CP023643.1|WP_096879646.1|2390008_2393572_+|chromosome-segregation-protein-SMC
MQLKRLEMHGFKSFADKVAIDFVPGITAVVGPNGSGKSNVTEAIRWVLGEQSAKALRGGKMSDVIFSGSDSRAAINIAEVTLVFDNEDGFLPDDHTEVSVTRRVYRNGDSEFEINQQACRLKDIVELFMDSGLGRESFSIVSQGKIDSILNSKPTDRRSIFEEAAGVLKYKSRKKQAETKLVETEDNLNRVQDILFELQDQVEPLEIQAAIAKDYLAQKETLEKYEVGVLADEIQELTKEADATTVALHQWQSKLIDSKKQAQSLLEQWQAKKDLFAKVTRDADVIQEKLVETARELERVNGQCDVLKERALHGQASDSDVVEQLEAINEIIVSATAEKETQQERYDVLLQKVTVMRESVKQLQNYLDGKVEWTPEKIERLKNGYIDVRHEQTNLKNENVFFIKQQEQNQQRLEKLRSENANVIKNHTETDVLQQEKQRLLAEKTANIESKRAEYEQLTQKLKATEADAAVADNQLYKAYEMRQHAKAKHDTLVDLENDYAGYYQGVKMLLKERQQFPGLIGAVAEQVTIPSRFDTAIDIALGASTQHIIVEDEQTARAGIGYLKSNRLGRATFLPITTIKPRVMPNDVIQRLQQHDGFLGIGADLVTIEPRFQGILGNLLGQVIIADTLVSANQLAKLANHRFRIVTLDGDVVNPGGSMTGGAMKQNKAPLLGRKNEIATLAKQLVQMEEVIHQLEDKVNSLKQTVISTRETRDSLRVEGERLNFEVQRIEEDIASTTAAMSRINENMHIYDFDVKELTDENNSLAQRLAANEAKIAEMAQTLISQETAIEQATQNQNMADEQRAEQVENLTAQKTELAVSEEKLTHANTKLAEMRATLKTNNERREQLQEKLTFIHTQQTEHASSSEQLEASRVALEAVMSEVQTQSDSLKAKRIDVEAELNEVASTREYQLNEVATYEKQFNEASMNLERFTSERTYRLSALMDNYELTLTDALERPALTLPIEEAKKKVRLIKRTIDELGPVNIGAIDEFQRIQTRYNFLTQQQTDLLTAKETLNVTMSEMDEEVSRRFYATFMQIKDQFEKIFPKMFGGGQAALVLTDPEDLLNTGVDIVAQPPGKKLQNLMLLSGGERALTAITLLFAIIETRPVPFCILDEVEAALDEANVLRFGSYMQAFQKEMQFIVITHRKGTMEAANVLYGVTMQESGVSKLVSVRLEEANVLTNT
>NZ_CP023643.1|WP_029091961.1|2393596_2394589_+|signal-recognition-particle-docking-protein-FtsY
MGFFKRMKDKMTNSSTEMTDKFKTGLEKTRDSFSGKLNSLVARYRTVDEDFFEELEEILIMADIGVNTVMELIEELKEEVKLRNIKETSALYEVISEKLVAIYEEAGETETELNINNEGLNVILFVGVNGVGKTTTIGKLAHKLKAEGKSVMLAAGDTFRAGAIEQLEVWGERVGVPVVKQKEGSDPASVIYDALQAAKTRHVDVLICDTAGRLQNKVNLMSELSKVRRVIEREVPHAPQEVLQVIDATTGQNGLQQAKVFGEATDVTGIVLTKLDGTAKGGIALAIRRELKVPVKFVGLGEQLNDLQVFDSNLFVYGLFGDMIDAEKAE
>NZ_CP023643.1|WP_069119993.1|2394936_2395872_+|ATP-binding-cassette-domain-containing-protein
MIKIESVTKSFKQKNKKIIAVNNVSLTVEQGDMLGLIGVNGSGKSTLIKMMNGILYPDQGEIIINGKNPWKHQKEIAYQIGSIFGQKSQLWYHLTPRETFMFLGSVYSVKLAALKLHVAELIQQFDLHSFVDRPVRKLSLGQRMKCEIVASLVHNPSILFLDEPTIGLDLIAKDSLTNLLSEYNKVHNKTMVITTHDISDIAKLCNRVVIIDQGVIIYNGTTIALTEKFANIVLLEIVLASDIAQLPIEVLQHEKSDAYTHKIKINTDKIAVSEVFNKLEIYEIIRYYQHSLDLTAIVRVLFEEGVIDDRK
>NZ_CP023643.1|WP_069125827.1|2395858_2396647_+|ABC-2-family-transporter-protein
MTGNKYFNMIVLGLKEQLIYVRAMLFRQFLMVTIMIIFVNLWSVVYQGQTEINGHSYNQVIWYLLITEAFFMSRAPVAYKIADEIKNGTFAYTSSRPYSYALYHFFVSLGDSSFKLLTNFIVGAVLVMLLGIKLNISFLAILCFFLVMLIGYIIDYCLQFMIGTFSFIQEEISGYVFIYEKLLFIFGGIIFPLSILSNHVEQLFFLMPFVYVIGFPAQLLTQGLSELNILYLGLQLLYLMIFIISAKACYTSLRKKTMMNGG
>NZ_CP023643.1|WP_069124469.1|2396794_2397754_+|IS30-family-transposase
MTYTHLTTDELVLIESYYHQTKKVKFVAETLKRSRQTIYNVYNALDDGLSMLDYYQRYKNNKKNCGRLPILLPDNETDYIQKKVAQGWTPDVIIGRNEFPISCSVRTLYRLFKRGYFNLAALPMKGKRKPNGHKEKRGKQAFKRTIHQRDKENRHFKSEFGHLEGDTIVGRNHKSAVITLVERLSKVIITLKPTGRQAIDIENSLNNWFKTIPTHLFKSITFDCGKEFSNWKSVSNSNDINIYFADPGTPSQRGLNENSNGLLRKDGLPKRMNFNEVDEAFIQSVASKRNNIPRKSLNYKTPLEVFLSYVNNDILSSLI
>NZ_CP023643.1|WP_096879647.1|2397798_2398497_+|ABC-2-family-transporter-protein
MLLNNVFFLGYWIMFFDIFKSDIFSLIDIFYVYSVVYVAFGLTQLIAGNLPNIATIIATGQLDIYLIKPRNSLLYMIMSKSSIVALGDIIYGLIALSVTLVKTSEYLFILLLYWLLLVVLVVTVIASYYIILGSLTFFIGNSKAITDTGTSALIMFATYPQVKLNPTMTLVLSTIIPSLIISIFPLQILRYSSSYYLLLLFIATAVFLLLSLVTYKQGLKRYESSNSINLNV
>NZ_CP023643.1|WP_069125824.1|2398677_2399904_+|MFS-transporter
MDNDIIKLVRKFNVITVMYSAGIVIWAASIELYLQSIGYTIAAIMLFNSFFWIFSTLSEIPAGVISDTFGRKKAMLISCILRGFGLGLLFIPSHQLWILLLSGLLTAVSESFNSGTMSAWVIDKVKSIDEKYDIENIFSKNSLFLTSTSMVVGFVGGRILGVKNLSYPLLAGIVLFIITILYISLFFKDNSHKKPHNQEMRLFGRFVTSFKEGYAFLRSDKLFFSLCISFLPLILLIVAPSNQWQLYFGNEYGGVKITAYIWVGMGLFGIIGSRIPQLLARVIKNKLSSLQLLLLLNMCAIILCVVITNVYLSVLLFLMHVSFTTADAIIRAGLLHNTIPAKNTNRNTLISFFYTIESCMTAVVIIVIGVLTTLINLGTIWIMFALIATIISLPSLRKLNGKIETEGF
>NZ_CP023643.1|WP_069125822.1|2399903_2400170_+|DUF2087-domain-containing-protein
MDYSEEQKEVLERHVKNNKITSLPRKLKKKVVLLEVITNDFKDGRCYTEQEVNTILLKWYDDYVILRRYLVDFKFLKREEDGSSYYKV

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Crispr_ID: NZ_CP023643_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023643_8

2545240-2546991

TypeII

II-A,II-B

Consensus_repeat	Method
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	CRISPRCasFinder
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	CRT
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	PILER-CR

26 spacers

DEDDh,csn2,cas2,cas1,cas9

The CRISPR arrays of NZ_CP023643_8

>merge|NZ_CP023643|8|2545240-2546991|CRISPRCasFinder,CRT,PILER-CR
ATCTCTTAATCATTCAATTTAACACAGCTCTAAAACCGTGGGAATTATATGATATTCCGAGGCGCTGTTTTAATACCATTCAATTTAACACAGCTCTAAAACACTTGGAAAGTACCAGCTTACGCAAAAGGTGTTTTAATACCATTCAATTTAACACAGCTCTAAAACATAACTTTTGATAGTCTCGAATACTCACCGGTTTTAATACCATTCAATTTAACACAGCTCTAAAACTTAAGGCGATTGTTATATCCTGGAAACTTGGTTTTAATACCATTCAATTTAACACAGCTCTAAAACTTAAGGCGATTGTTATATCCTGGAAACTTGGTTTTAATACCATTCAATTTAACACAGCTCTAAAACTTAATAAAGATTACGAAAAAGAAATGCGTGGTTTTAATACCATTCAATTTAACACAGCTCTAAAACATAACACCTAACATACCTGTTGCACCATATGTTTTAATACCATTCAATTTAACACAGCTCTAAAACATAACACCTAACATACCTGTTGCACCATATGTTTTAATACCATTCAATTTAACACAGCTCTAAAACATGTTTTGTGTTTTCTGCTTCCGTTAGCCAGTTTTAATACCATTCAATTTAACACAGCTCTAAAACACATTTTTATTAGCTCGCTCCCAATTTAAAGTTTTAATACCATTCAATTTAACACAGCTCTAAAACAAACGAGACAACGGAATACCGAATGCCGTAGTTTTAATACCATTCAATTTAACACAGCTCTAAAACGATAAGTCGGTCAAGATGTACATGGTATGGGTTTTAATACCATTCAATTTAACACAGCTCTAAAACATAGTTCCGAGGCTTGCCTAGCAAGGTACAGTTTTAATACCATTCAATTTAACACAGCTCTAAAACTTCATGATAATTATTCCTTTGGACGTTCCTGTTTTAATACCATTCAATTTAACACAGCTCTAAAACATAACCCAGCCTTTTTTGGTAGCTAGTGGTGTTTTAATACCATTCAATTTAACACAGCTCTAAAACGATATGCAGTATTGGTTATTATTCTTAAAAGTTTTAATACCATTCAATTTAACACAGCTCTAAAACATAGAAGACCAATTGTTATAAAGATACATCGTTTTAATACCATTCAATTTAACACAGCTCTAAAACTCAGGAGCAGCGGTCGTGACATTCACATTAGTTTTAATACCATTCAATTTAACACAGCTCTAAAACACTCAATTGGGTATAAATCACCTGAGATATGTTTTAATACCATTCAATTTAACACAGCTCTAAAACTCAGGGATATAGAGCGCTTTTGTTGATTCAGTTTTAATACCATTCAATTTAACACAGCTCTAAAACTTGTCGGACGTTATTTTGCGTTTTTGGGTAGTTTTAATACCATTCAATTTAACACAGCTCTAAAACGAAGATGATAAGGAAATTGCTTTTAGTGATGTTTTAATACCATTCAATTTAACACAGCTCTAAAACTCCGTCATCATGTCCGTTTCTCTGAAACCAGTTTTAATACCATTCAATTTAACACAGCTCTAAAACTTCATGATAATTATTCCTTTGGACGTTCCTGTTTTAATACCATTCAATTTAACACAGCTCTAAAACTTAGTAAAAAAACGGGTGTGCCACTAAATAGTTTTAATACCATTCAATTTAACACAGCTCTAAAACACAACGATTGACACACCTAACTTTGAAACAGTTTTAATACCATTCAATTTAACACAGCTCTAAAAC

>NZ_CP023643|8|8|2545240-2546991|CRISPRCasFinder
ATCTCTTAATCATTCAATTTAACACAGCTCTAAAAC	CGTGGGAATTATATGATATTCCGAGGCGCT
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	ACTTGGAAAGTACCAGCTTACGCAAAAGGT
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	ATAACTTTTGATAGTCTCGAATACTCACCG
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	TTAAGGCGATTGTTATATCCTGGAAACTTG
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	TTAAGGCGATTGTTATATCCTGGAAACTTG
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	TTAATAAAGATTACGAAAAAGAAATGCGTG
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	ATAACACCTAACATACCTGTTGCACCATAT
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	ATAACACCTAACATACCTGTTGCACCATAT
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	ATGTTTTGTGTTTTCTGCTTCCGTTAGCCA
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	ACATTTTTATTAGCTCGCTCCCAATTTAAA
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	AAACGAGACAACGGAATACCGAATGCCGTA
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	GATAAGTCGGTCAAGATGTACATGGTATGG
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	ATAGTTCCGAGGCTTGCCTAGCAAGGTACA
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	TTCATGATAATTATTCCTTTGGACGTTCCT
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	ATAACCCAGCCTTTTTTGGTAGCTAGTGGT
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	GATATGCAGTATTGGTTATTATTCTTAAAA
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	ATAGAAGACCAATTGTTATAAAGATACATC
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	TCAGGAGCAGCGGTCGTGACATTCACATTA
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	ACTCAATTGGGTATAAATCACCTGAGATAT
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	TCAGGGATATAGAGCGCTTTTGTTGATTCA
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	TTGTCGGACGTTATTTTGCGTTTTTGGGTA
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	GAAGATGATAAGGAAATTGCTTTTAGTGAT
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	TCCGTCATCATGTCCGTTTCTCTGAAACCA
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	TTCATGATAATTATTCCTTTGGACGTTCCT
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	TTAGTAAAAAAACGGGTGTGCCACTAAATA
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	ACAACGATTGACACACCTAACTTTGAAACA
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC

>NZ_CP023643|8|1|2545240-2546991|CRT
ATCTCTTAATCATTCAATTTAACACAGCTCTAAAAC	CGTGGGAATTATATGATATTCCGAGGCGCT
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	ACTTGGAAAGTACCAGCTTACGCAAAAGGT
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	ATAACTTTTGATAGTCTCGAATACTCACCG
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	TTAAGGCGATTGTTATATCCTGGAAACTTG
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	TTAAGGCGATTGTTATATCCTGGAAACTTG
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	TTAATAAAGATTACGAAAAAGAAATGCGTG
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	ATAACACCTAACATACCTGTTGCACCATAT
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	ATAACACCTAACATACCTGTTGCACCATAT
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	ATGTTTTGTGTTTTCTGCTTCCGTTAGCCA
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	ACATTTTTATTAGCTCGCTCCCAATTTAAA
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	AAACGAGACAACGGAATACCGAATGCCGTA
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	GATAAGTCGGTCAAGATGTACATGGTATGG
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	ATAGTTCCGAGGCTTGCCTAGCAAGGTACA
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	TTCATGATAATTATTCCTTTGGACGTTCCT
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	ATAACCCAGCCTTTTTTGGTAGCTAGTGGT
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	GATATGCAGTATTGGTTATTATTCTTAAAA
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	ATAGAAGACCAATTGTTATAAAGATACATC
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	TCAGGAGCAGCGGTCGTGACATTCACATTA
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	ACTCAATTGGGTATAAATCACCTGAGATAT
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	TCAGGGATATAGAGCGCTTTTGTTGATTCA
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	TTGTCGGACGTTATTTTGCGTTTTTGGGTA
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	GAAGATGATAAGGAAATTGCTTTTAGTGAT
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	TCCGTCATCATGTCCGTTTCTCTGAAACCA
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	TTCATGATAATTATTCCTTTGGACGTTCCT
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	TTAGTAAAAAAACGGGTGTGCCACTAAATA
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	ACAACGATTGACACACCTAACTTTGAAACA
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC

>NZ_CP023643|8|1|2545306-2546991|PILER-CR
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	ACTTGGAAAGTACCAGCTTACGCAAAAGGT
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	ATAACTTTTGATAGTCTCGAATACTCACCG
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	TTAAGGCGATTGTTATATCCTGGAAACTTG
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	TTAAGGCGATTGTTATATCCTGGAAACTTG
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	TTAATAAAGATTACGAAAAAGAAATGCGTG
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	ATAACACCTAACATACCTGTTGCACCATAT
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	ATAACACCTAACATACCTGTTGCACCATAT
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	ATGTTTTGTGTTTTCTGCTTCCGTTAGCCA
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	ACATTTTTATTAGCTCGCTCCCAATTTAAA
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	AAACGAGACAACGGAATACCGAATGCCGTA
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	GATAAGTCGGTCAAGATGTACATGGTATGG
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	ATAGTTCCGAGGCTTGCCTAGCAAGGTACA
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	TTCATGATAATTATTCCTTTGGACGTTCCT
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	ATAACCCAGCCTTTTTTGGTAGCTAGTGGT
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	GATATGCAGTATTGGTTATTATTCTTAAAA
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	ATAGAAGACCAATTGTTATAAAGATACATC
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	TCAGGAGCAGCGGTCGTGACATTCACATTA
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	ACTCAATTGGGTATAAATCACCTGAGATAT
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	TCAGGGATATAGAGCGCTTTTGTTGATTCA
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	TTGTCGGACGTTATTTTGCGTTTTTGGGTA
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	GAAGATGATAAGGAAATTGCTTTTAGTGAT
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	TCCGTCATCATGTCCGTTTCTCTGAAACCA
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	TTCATGATAATTATTCCTTTGGACGTTCCT
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	TTAGTAAAAAAACGGGTGTGCCACTAAATA
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC	ACAACGATTGACACACCTAACTTTGAAACA
GTTTTAATACCATTCAATTTAACACAGCTCTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023643.1\|WP_069125602.1\|2553534_2555727_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|378453
NZ_CP023643.1\|WP_069125848.1\|2561488_2562628_-\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	unknown	unknown	gnl\|CDD\|235472
NZ_CP023643.1\|WP_029090917.1\|2532588_2536908_-\|PolC-type-DNA-polymerase-III	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|234767
NZ_CP023643.1\|WP_069125601.1\|2548946_2552966_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	mkCas0193_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|374653
NZ_CP023643.1\|WP_069125588.1\|2537298_2537676_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023643.1\|WP_069125590.1\|2537812_2539444_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NZ_CP023643.1\|WP_096699364.1\|2556918_2558220_+\|ISL3-family-transposase	unknown	unknown	gnl\|CDD\|225995
NZ_CP023643.1\|WP_029090912.1\|2541892_2542108_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023643.1\|WP_069125847.1\|2558481_2560182_-\|proline--tRNA-ligase	unknown	unknown	gnl\|CDD\|236405
NZ_CP023643.1\|WP_051457451.1\|2555997_2556369_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023643.1\|WP_081315960.1\|2541440_2541878_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|182510
NZ_CP023643.1\|WP_069125593.1\|2542269_2542632_+\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NZ_CP023643.1\|WP_029090918.1\|2531677_2532247_-\|alkaline-shock-response-membrane-anchor-protein-AmaP	unknown	unknown	gnl\|CDD\|380217
NZ_CP023643.1\|WP_069125591.1\|2539824_2541375_+\|ParB/Srx-family-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|319249
NZ_CP023643.1\|WP_069125599.1\|2548058_2548931_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
NZ_CP023643.1\|WP_069125596.1\|2543471_2545091_-\|DUF2075-domain-containing-protein	unknown	unknown	gnl\|CDD\|378274
NZ_CP023643.1\|WP_069125594.1\|2542612_2543410_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023643.1\|WP_069125606.1\|2547729_2548047_-\|CRISPR-associated-endonuclease-Cas2	cas2	mkCas0206_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|226043
NZ_CP023643.1\|WP_029091781.1\|2560203_2561472_-\|RIP-metalloprotease-RseP	unknown	unknown	gnl\|CDD\|272878
NZ_CP023643.1\|WP_069125597.1\|2547049_2547733_-\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd09644_csn2_CAS-II-A	gnl\|CDD\|273841

Protein	Function_ID	Function_description	E-value
NZ_CP023643.1\|WP_069125602.1\|2553534_2555727_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|378453	pfam10593, Z1, Z1 domain. This uncharacterized domain was identified by Iyer and colleagues. It is found associated with a helicase domain of superfamily type II.	3.61522e-16
NZ_CP023643.1\|WP_029090917.1\|2532588_2536908_-\|PolC-type-DNA-polymerase-III	gnl\|CDD\|234767	PRK00448, polC, DNA polymerase III PolC; Validated.	0
NZ_CP023643.1\|WP_069125606.1\|2547729_2548047_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	3.40512e-25
NZ_CP023643.1\|WP_069125590.1\|2537812_2539444_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	9.56638e-131
NZ_CP023643.1\|WP_069125599.1\|2548058_2548931_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.35668e-103
NZ_CP023643.1\|WP_069125847.1\|2558481_2560182_-\|proline--tRNA-ligase	gnl\|CDD\|236405	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional.	0
NZ_CP023643.1\|WP_081315960.1\|2541440_2541878_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|182510	PRK10514, PRK10514, putative acetyltransferase; Provisional.	6.29781e-33
NZ_CP023643.1\|WP_069125593.1\|2542269_2542632_+\|PadR-family-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	3.03244e-23
NZ_CP023643.1\|WP_069125597.1\|2547049_2547733_-\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|273841	TIGR01866, CRISPR-associated_Csn2_family_protein, CRISPR type II-A/NMEMI-associated protein Csn2. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas loci. The species range so far for this subtype is animal pathogens and commensals only. This protein is present in some but not all NMENI CRISPR/Cas loci.	3.18348e-31
NZ_CP023643.1\|WP_069125591.1\|2539824_2541375_+\|ParB/Srx-family-N-terminal-domain-containing-protein	gnl\|CDD\|319249	cd16390, ParB_N_Srx_like, uncharacterized family distantly related to the N-terminal domain of the ParB/Srx superfamily. Uncharacterized proteins distantly related to the N-terminal domain of the ParB superfamily, primarily involved in bacterial and plasmid parABS-related partitioning systems. A small minority of proteins in this family include a C-terminal inorganic pyrophosphatase domain. Also within the ParB superfamily is sulfiredoxin (Srx), which is a reactivator of oxidatively inactivated 2-cys peroxiredoxins. Other families includes a putative regulator in the biosynthetic gene cluster and a family containing a Pyrococcus furiosus nuclease and putative transcriptional regulators SbnI (Staphylococcus aureus siderophore biosynthetic gene cluster ) and EdeB (Brevibacillus brevis antimicrobial peptide edeine biosynthetic cluster). Nuclease activity has also been reported in Arabidopsis Srx.	8.22837e-47
NZ_CP023643.1\|WP_069125601.1\|2548946_2552966_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|374653	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9. The REC lobe of Cas9 - the CRISPR-associated endonuclease Cas9 - includes the REC1 and REC2 domains. REC1 forms an elongated, alpha-helical structure consisting of 25 alpha helices and two beta-sheets, whereas REC2 inserted within REC1 adopts a six-helix bundle structure. The REC lobe and the NUC lobe of Cas9 fold to present a positively charged groove at their interface which accommodates the negatively charged sgRNA:target DNA heteroduplex. CRISPR (clustered regularly interspaced short palindromic repeat)-Cas system occurs naturally in bacteria as a defense against invasion by phages or other mobile genetic elements. Cas9 is targeted to specific genomic locations by sgRNAs or single guide RNAs, in order to complex with invading DNA in order to cleave it and render it inactive.	1.02879e-121
NZ_CP023643.1\|WP_029090918.1\|2531677_2532247_-\|alkaline-shock-response-membrane-anchor-protein-AmaP	gnl\|CDD\|380217	NF033218, anchor_AmaP, alkaline shock response membrane anchor protein AmaP. The founding member of this family, AmaP (Asp23 membrane anchoring protein), is related to Asp23 through part of its length, but includes a highly hydrophobic N-terminal region that should make it an integral membrane protein. Asp23 (alkaline shock protein of 23 kDa), described in PMID:7864904, is a cytosolic protein in Staphylococcus aureus, strongly induced by a pH shift from 7 to 10, and also recruited to the membrane. AmaP appears to be the partner protein with an integral membrane segment and the ability to anchor Asp23 to the membrane. This model was built to identify full-length homologs of AmaP, while excluding Asp23. Some but not all members of this family score above the cutoffs of Pfam model version PF03780.11, but full-length homologs of Asp23 score considerably higher. Asp23 family members previously were known as DUF322.	1.22281e-19
NZ_CP023643.1\|WP_029091781.1\|2560203_2561472_-\|RIP-metalloprotease-RseP	gnl\|CDD\|272878	TIGR00054, Putative_zinc_metalloprotease_slr1821, RIP metalloprotease RseP. Members of this nearly universal bacterial protein family are regulated intramembrane proteolysis (RIP) proteases. Older and synonymous gene symbols include yaeL in E. coli, mmpA in Caulobacter crescentus, etc. This family includes a region that hits the PDZ domain, found in a number of proteins targeted to the membrane by binding to a peptide ligand. The N-terminal region of this family contains a perfectly conserved motif HEXGH as found in a number of metalloproteinases, where the Glu is the active site and the His residues coordinate the metal cation. Membership in this family is determined by a match to the full length of the seed alignment; the model also detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain. [Protein fate, Degradation of proteins, peptides, and glycopeptides].	3.44547e-99
NZ_CP023643.1\|WP_096699364.1\|2556918_2558220_+\|ISL3-family-transposase	gnl\|CDD\|225995	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	4.23465e-65
NZ_CP023643.1\|WP_069125848.1\|2561488_2562628_-\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	gnl\|CDD\|235472	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional.	0
NZ_CP023643.1\|WP_069125596.1\|2543471_2545091_-\|DUF2075-domain-containing-protein	gnl\|CDD\|378274	pfam09848, DUF2075, Uncharacterized conserved protein (DUF2075). This domain, found in various prokaryotic proteins (including putative ATP/GTP binding proteins), has no known function.	5.02992e-119

>NZ_CP023643.1|WP_069125596.1|2543471_2545091_-|DUF2075-domain-containing-protein
MTGLKIKQFKLDKQAIKQISDDYIVDYPTVYLLNNDKEAYIGETVALKNRMRAHLANPQRSKLTKAHVISHNEFNQSATYNIETKLINYFLADQKYILQNKSQTVQSITHNYHNKAYFNEQVFTTLWRQLHTKGIASHSADEIENKDIYKLSPFKQLSAEQLDLKNTIIEKCTTHINDQKPFVYFIKGEAGVGKSVILSSVFNRIQELSQDKNSPLYQTDNKLLVNHGEMLKTYEKIASKVKSLKVSNFTKPTTFINDMKKNNDFADIVFVDEAHLLLSRSDSYNSFVEDNHLEEIIKRSKIVIAVYDEKQVLKLKSYWDENKLAHLNVDYTTEEPYQLKDQFRMKANDEVVDWIDSFVTTEIKPLPHDDNFDFKIFDSALAMYEAIKQKNTTAGLSRIVSTFDYVHMKKNNEVYYVEDTNFKLPWNTTVKGRETWAERQDSIDEVGSIYTVQGFDLNYVGVILGPSVSYDVETDSVKIITANYCDTAAFSGQTGFDNVELIKQKIVLNSINILMKRGINGLYIFASDPALRERLARNA
>NZ_CP023643.1|WP_069125594.1|2542612_2543410_+|hypothetical-protein
MKELIAENNNKRHALTKQNQLYYEDILLYLRLRGGWRYQEQQIEEILLVILDDLLSAQADNITALDYFGKHPQQLADAMLVEIKPSTWSERLSAFLYAYAPFLLFFILMTFIQTVPAINFGKLLFVLVALVLLISILLLLIRRSIYSKKIKFEKIVLYGVSSLGMMGLLLTMIYFPPFFVVSFNNLTSILIISLILVIGCYFSFNNKESLLRPYFPLLLLGCLLAYAYRVPMLQGWLDSLTGTIITIGLLVIGLILSTKTVLRKK
>NZ_CP023643.1|WP_069125593.1|2542269_2542632_+|PadR-family-transcriptional-regulator
MESELKISSQMLKGILEGCILIVISRETVYGYEMNKKLQAFGFSPLSEGTIYPLLLKLQNKGLIESEQRLSPDGPKRKYFSLSDTGQVECERFIQQWRILRHSVDQLIEGGGSCDEGTNS
>NZ_CP023643.1|WP_029090912.1|2541892_2542108_-|hypothetical-protein
MQIWAMYKERLSFILIALIVIIFGWLLIRSSWKLRTSMPLFLAVLLFIIGLVITIIAVYLLIFIIYFGLNY
>NZ_CP023643.1|WP_081315960.1|2541440_2541878_-|GNAT-family-N-acetyltransferase
MTIKMKPAIRKDDAIIISIWEASVRETHDFLLPGDFEEFKIQLIKYLPLLDMQLWLDDDVPIGFSAIANQKLEMFFIAPPYIGQGYGRSIMAHLFSDFAIKSVDVNEQNAVAVRFYLKQHFEVLSRDERDDGGKPYPILHLGLKA
>NZ_CP023643.1|WP_069125591.1|2539824_2541375_+|ParB/Srx-family-N-terminal-domain-containing-protein
MKKITQLSIVILLLIFAFLPFKTVAAEASLSPTVVYDVPISSLHPTQAGIGKIQISYKLTEYLANDAALTASFFEDFNEDNGYIKGNYLTAETQTPKQDKNLLKTVNMREELGALVNPALGSLSVQVVIGPHKEYYAIDGHHGSNTNQLIKEMTGLGYDKINVAVIADYSDLDEKTFWQTMLAQKYMYPKAYNVATHQYETISGLKLPKQMNNQLFVNDPFRGLNYFWRSTAINKDTISVPFAEFYWGEFMSRTHEFDDLNFQTPDDYQTAFERGNAIFEKLIAGDAKYTYLFSEVVTKQYGITANQIGLQDSYSAAKLAKQQDKLDTAKAYMFSHPNLTTSNQAVFDGNTPVEPPTSEDSSTDDNTSTSNDETSSTDSADSSSSASESDTSGSDTNSSDTATSSTDSADSSSSASESDTSGSDTNASDTATSSTASDDSSSSESQKNSSEREASSSTDAANSPAEQTHSSDKTATTQIADSTLPHTGDRPIQFWLILLGAACVITAGIKFYRLKE
>NZ_CP023643.1|WP_069125590.1|2537812_2539444_-|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MKELMKMNNITVTFKEDLLFKAEHIGIQQGECLAIIGRNGAGKSTLMRLMTEDLLPSTGHIQWFDTQIKPLLVAQEAATFVEDKMVSTKEAQLLSQWQVPNLPYEKLSGGEKLKRRLAFGFAQPHCLLLLDEPTNHLDKDSTAFLIEQIKSYTGTVVLVSHDRYFIDAVATKIWSIESQQIIEQMGNYSHYQSVRENREKEQARAFDKQKKEIKRVSDQMNTLQSWSSEAHAQSTKQEGFKEYYRGKAKRMDTQVKSKQKRLQKEIDKADLAPITQEETVTFTLKNQPKQGRRILELQGITKKYQQETLFEAVSFTIQQGEKIALTGANGAGKTTLLNIIMGETPTSGSVWRSPAAKIGYLTQEVFDLPLDKSPEKLFTPDNRSEIAGIRHLFKQLGFQAQQWFNPISEMSMGERVKCKLMRYIIEGTNVLVLDEPTNHLDLPSREQLEVTLAAFTGTLIVVSHDRYFIEKVTDRVLLLKDKKIGQPLEKQVTGEDNDTKRLLLENERQHILGQLSLLTPKDSSYDDLDKAFKELSQQIRNLS
>NZ_CP023643.1|WP_069125588.1|2537298_2537676_-|hypothetical-protein
MTQLHVLQSVYEDIKSRIQQRGHDVQVTFPIEEYQYPFVVLDKQEDHNFLAENRSAYIVFTCYDYAEKREDILDLIRDIFREFFDNGRDRLPWPLLQAKLQIETNWHHGKSVTGAEVTLHLDLSK
>NZ_CP023643.1|WP_029090917.1|2532588_2536908_-|PolC-type-DNA-polymerase-III
MGNPNETNKLNILIEQIGLSDNEVIVNELQTASLEKVVVHQQSQRWQFVIQIPTYLTGTTYRVLTEALGNSFDHIHSSELKFISLGGELTSELLQEYWPFFANKVREGSPMIGQRIADQVPSVSQRKITLSADNETEKMVMSKKCTNQILPLLEQAGITGYTFIIDVQSVNRESEEFKKFTEDKAQEDKAKALATLNEMQKRVENQSKDNPVPSGPLVLGLPIKANEEMMTLDAIVDEERRVTVQGYIFDAEVRELRSGRSLVQFKITDYRSSIIVKMFSRDKDDSSIFAGIKKGLWVKVRGSVQNDNFSRELILMAQDINEISVKGREDKAAEKRVELHLHTPMSAMDAVTPTGDLVAQAAKWGHKAVAITDHSVAQSFPDAHAAGKKHGIKILYGVEINLIDEGVPIVYNESHRNLRDASYVVFDVETTGLSAVYDKVIELGAVRMVNGEKVDEFEAFINPGHPLSATTINLTGITDDMVANTPTEEEVFKRFKEWAGDDILVAHNASFDMGFLNTAYKRHNMGVAENPVLDTLELARFLYPHFKNHRLNTLTKRFNIILEQHHRAIFDSEATAYLAWKLIKDAEEEHTILFHDQLNEHVGEGDAYKRARPSHATVLATNYVGLKNMFKLISEANLSYFHRIPRVPRTLLNKLREGLIVGSGCDRGEVFMAMMQKGAVEAENAAAYYDYIEVMPPTVYQTLIENEMVRDREALQDIIKNVIALGEKLGKTVVATGNVHYLDPKDKIYRKILINSQGGANPLNRYPMPDVHFRTTDEMLEEFAFLGEDKAFELVVTNTNAIADQCEPIVPVKDELYTPKIEGADEEVTEMSYNNARAKYGEELPQIIIDRLEKELKSIIGHGFGVIYLISQKLVKKSNDDGYIVGSRGSVGSSFVATMTGITEVNPLPPHYVCPKCQHSEFFHDGSVGSGFDLPDKPCTECGTNYDKDGHDIPFETFLGFKGDKVPDIDLNFSGDYQAQAHNYTKVLFGEEYVYRAGTIGTVAEKTAYGFVKAYERDNDLHIRGAETDRLVSGCTGVKRTTGQHPGGIIVIPDYMDVYDFSPIQFPADDVNSDWKTTHFDFHSIHDNVLKLDILGHDDPTMIRMLQDLSGITPEQIPTDDPEVFALFSGTTSLGVTPEDINSKTGTLGVPEFGTRFVRQMLEQTNPSTFSELLQISGLSHGTDVWLGNAEELIKSGQSVLSEVIGCRDDIMVGLIYMGVEESLAFKIMESVRKGKGIPEDWEAAMRAENVPDWYIDSCKKIKYMFPKAHAAAYVLNAVRIAYFKVHHPLFYYATYFTVRADDFDLISMVNGKHAIVASMKNITDKGMEASTKEKNLLTVLELANEMVARGYKFQKVDLYKSKAAEFIIEGDSLIPPFDSIPGLGTNVAKQLEAARADGIFLSKEDVKQRSKVSQSIIDYMTDMGCLEGLPDENQLSLF
>NZ_CP023643.1|WP_029090918.1|2531677_2532247_-|alkaline-shock-response-membrane-anchor-protein-AmaP
MRKSQKFIMGFLAILVMLIAYFVILQVQPSANTPFHVGDVLTYVRDVPYYNLVLFWIAFGLLSLAFLAFVISFLIPPKERFLTLYSENKNTLEIQKKAIESIILTKAKQKQFLEDVSPTVIVKTKKQKITGEIHCKVLDDTDFTARNKIFLQELHRDIVQMLNLEAENIQLSLKIKPRKIKTSSKQRVI
>NZ_CP023643.1|WP_069125597.1|2547049_2547733_-|type-II-A-CRISPR-associated-protein-Csn2
MNLEIFQLDNSLPFNDTSVIIVEVENIKFYRSLIESFHCISEFETPAIEMRLYENNEEVNIANETVIITDILHFDFKQRVFITKIYKQLEKQYHNNKEIDLIADQLIELRQLIGIQLNDYDLPLQLNEEVKLSSLYKLFNVTIEVETESILDRLLLLIDLVAQLKIARIIILNNVRCYFVEQELLEVYKYALYKNIKLLLIESTFKKGKLQYERKLQIDNDYIEFWQ
>NZ_CP023643.1|WP_069125606.1|2547729_2548047_-|CRISPR-associated-endonuclease-Cas2
MRILLFFDLPVETTVETTVEKRAYRHFRKYLVQEGFIMLQQSVYSKLVLNGTTANLLKNKIKKACPTKGLVQVLTITEKQYANIDLMVGFQQDKVLDDDSRLTII
>NZ_CP023643.1|WP_069125599.1|2548058_2548931_-|type-II-CRISPR-associated-endonuclease-Cas1
MSWRTVVITKHVKLSYKNSYLIVRGEQEQMIHLSEIHTLLIDTTRAVLTAYLISELMKQKIKVIFCDEKRQPESEIVPYYGAHNTSKKIKAQLAWSISAQQEIWTAVIAEKIQQQQRLLNKLGLPAAQKLKKYLADLQLYDVTNREGHAAKVYFNALFGKDFVRESDDTINIALNYGYTILLSTFNKEIVSQGYLTQIGLKHTNQFNYFNLSSDLMEPFRPMVDALVYNNMNDTFDTAYKLQLVNLLNEQVIIQGQKHFVTMAIHLYLKSVFKALDEGNPQLIKSLEVAQ
>NZ_CP023643.1|WP_069125601.1|2548946_2552966_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MSLNTNKKYNIGLDIGTTSVGWAVTDADGQKLLKAKNKNLWGVSLFEAGKTAAERRGYRSTRRRLNHRKFRLRLLEDMFEKEILSKDPSFFIRLKEAFLSPKDEQKQFKGNILFNDKDYTDADYYEQYKTIYHLRYDLISQHRQFDIREVYLAIHHLIKYRGHFIYEDQTFTTDGNQLQHHIKAIITMINSILNRIIIPETIDINVFEKTLLDRTMNRSSKVKFLIELTGEDKQDKPLLKELFNLIVGLKAKPASIFEQENLATIVETMNMSTEQVQLDLLTLADVLADEEYDLLLTAQKIYSAIILDESMDGYEYFAEAKKESYRKHQEELVLVKKMLKSNAITNDERAKFEYFYTDYIGAKSSNYEESKIIKKGLSAAYGKYSKEERLFKHIELLLAKENVLTTVEHDLLEKNITFASLLPLQRSSRNAVIPYQVHEKELVAILENQATYYPFLLEQKDNIHKLLTFRIPYYVGPLADQKDSEFAWMVRKQAGKITPFNFEEMVDIDASSEAFIKRMTNKCTYLIHEDVIPKHSFSYAKFEVLNELNKIRLDGKPIDIPLKKRIFEGLFLEKTKVTHTSLKKWLAEHEHMTVSVVQGTQKETEFATSLQAFHRFVKIFDRETVSNPANEEMFEKIIYWSTVFEDKKIMRRKLSEYPQLTEQQQVQLAQVRFRGWGRLSQRLINRIKTPVSGDEDHKLSINEILWQTNENFMQIIRNKDYLFKKIIEEQFENETALLNKQRIDELATSPANKKGIWQAIKIVKELEKVLQQPAENIFIEFARSDEESKRSTPRDKFIEKAYAQLKKETDTFNLEHLKELKQRSKQLSSQRLFLYFIQNGKCMYSGEHLDIERLDSYEVDHILPQSYIKDNSIENLALVKKVENQRKKDSLLLNSSIINQNYSRWEQLKNAGLIGEKKFRNLTRTKITDRDKEGFIARQLVETRQITKHVTQLLQQEYKDTTKVFAIKATLVSDLRRKFEFIKNRNVNDYHHAQDAFLVAFLGTNITSNYPKIEMEYLFKGYQHYLNEVGKSAAKPKFTFIVENLSKQQYNSTTGEVKWNPEVDIAKLKRILNFKQCNIVRKVEEQSGALFKETIYSVEESSSKTIPLKKHLDTAIYGGYTAVNYASYALIQFKKGRKLKREIIGIPLAVQTRIDNSETSLQTYIAEQIKSEVEILNGRILKYQLISNNGNRLYIAGPRERHNARQLIVSDEAAKVIWLISTKQAVEATFLKHYTLEHLEAVFEELIRKQAADYQIFENLIKKIEVNKAYFYSCTYNEKVKVIEELLKITQANATNGDLKLLKMTNREGRLGSVSVALDFKIINQSVTGLYQSIEDYNN
>NZ_CP023643.1|WP_069125602.1|2553534_2555727_-|DEAD/DEAH-box-helicase
MQLTNKIKTALFFTALKQRNSYHSVEENLMKQTIKQLLEKPTTFKKPGMLLGEVQSGKTRAFIGVMGLAYDNGIDVVILLTKNSNALARQTKQRLESEFEESITHDKLAIYDITAMPQQLVKYELAKKLALVVKKEKNNLQRLDTLLFEHYPELSNKRILVIDDEADYASVSYEQNREKNRVELRVIANQIDEIRGKISQLLYLQVTATPYSLYLQPDDEITAGFNGYQPKRPAFTTILPTHDKYVGGELYFEKAKEKNHLASYLYHEITKAEIEIFKKSDKRRVKIDFLLTGERYQGIRSALINFIVGGKLRNLQQQEQQHYPEKYAFLMHTMTTKAAHQWQADIVKNLAKQLTIAMTEKPELFEALILQAYTDLERSLEKIDAIPTFPTVLMAVKQALVNEELLIEVVNSEKDVELLLDKSGQLKHRTPLNFFIGGQILDRGITIDNLIGFYYGRNPQKFQQDTVLQHSRMYGARPLIDIAVTRFYTTQTIYDVMEQMYYFDADLRQAIISGSNQQGVVFIQKDDNNQIIPCSPNKLLLSNIQMLKAHRRLLPIGFQTIPKSYLAPLVKKLDIFIADLRKRAVAVDEDDNRSFLVKVEDVETILEQIVATYAVKDAHPWDSRHFISALLYMSRETKSADKGLVWLVLRENRNMSRIRKSNQHYEDAPDTSHDELAEARALATDIPALILLRQNGEEKQGWKGGAFYWPVLITPADFKTTVYSKNTYPK
>NZ_CP023643.1|WP_051457451.1|2555997_2556369_-|hypothetical-protein
MDNNEQEYSREYVQNGVVPQEIKGWNWGAFCFNINWGFGNKSYLPLLCLVPFFNIIWIFVCGAKGNEWAWKNNNYQSIETFKAVQETWNRAGWISFLIGLAFAIMYILFFVFIGFAAFNSYNQ
>NZ_CP023643.1|WP_096699364.1|2556918_2558220_+|ISL3-family-transposase
MSTITSNNIANSSGITDENISFSKTWCEKQVIKGFSSICYYGTLTYTPSRCSNCGFTSETVKIIKYGTKLSRITLTKSANLPTYLFLKKQRFYCEGCHTTFTASSSLVKRNCFISKRVIQAISSEGQFISSEKNIAYRHSVSPTTVNRAIHQWSHQFKPSYGSLPAHLSMDEFKSVKSADSQMSFIFTDARKHEIMDILPTRRLHHLKDYFLNYSYEARASVKTVVVDMNAPYTSLIRDVFPKAIVIIDRFHLVQLVMRSLNQTRIKLMNRYNTSRPEDKKVYRKLKSYWKLLLKNKTELSDSDYRYQRLFKGPKSSMGIIDYIMTLDVEFKATYQVAQNLLVAVQHKNISAYQTLVLSENKLISPQMKRSLRTLKKYLPEIANSFKYNDSNGHLEGINNKIKMIKRISFGYRNFTNFRNRILLGFNNKRVAS
>NZ_CP023643.1|WP_069125847.1|2558481_2560182_-|proline--tRNA-ligase
MKQSKIFIPTLKEVPSDAEIKSHQFLIRAGYVRQSARGIYSYLPLAQTVKNKIEAIVREELAEIGATEILMPVLQPAEIWKESGRWDKYGADLMTMKDRHNRDFALGPTHEEMVTDLLRDDINSYKKLPLTFFQIQTKFRDERRPRFGLLRGREFLMKDAYSFHAETESLDTTFDDMATAYGRILDRCGLEWRSVIADSGAIGGTGSREFQVIADVGEDTIVYDKNSDYAANVEMAEVYYKANPSTEEKLAKEKVATPGMTSIADLVEGLSIPIEKTIKSLLVQADEEIVMVLLRGDHEFNDVKLKNLLDLTVIEMASETAALEVMGAEYGSLGPVNVPADMKIYADSAVQDIVNASVGANETGYHFINVNHGTDFNVETFADLRMVQEGDLTPDGVGTLSFAKGIEVGHIFKLGSLYSEAMKATYLDENGRQQPFIMGCYGLGISRLLAAIIEQTADDKGLVWNKLLAPYHVHLIPIKPADEDQAALTTEIEKLLAENNLTSLIDDRKERPGVKFADSELIGLPVRITVGKRAAEGIVEVKVRATGESFEVETADLLAKINEILN
>NZ_CP023643.1|WP_029091781.1|2560203_2561472_-|RIP-metalloprotease-RseP
MENIIAFIVVFGLLVFFHELGHFLFAKNAGILVREFAIGFGPKIFSYKKKETLYTIRLLPLGGYVQMAGQDDEPIVLNAGYRVGLLFNDAGEVKQIVTSNLEKYPNIEPFEVASAELETSLFIKGIVLGDETEELITYTVARDCEIVDGNDKRAIAPYDRQFRSKSWIHRFMTIAAGPVFNFILAFFLFIIFAFASGGVPSNDARMGDVQSGSAAATAGIKENDLIKEIDGKKIATWTDMTTIVRANPDKKLNFAIERNGEIEKIVVTPKKVTQGEEKVGQIGVMAPKDSSIGAKLSYGVDQTVFWFKQIFVSLGNLITGGFSLDKLGGPVYIYQSTAAVVNNGAIMLLQWGAVLSINLGIINLLPIPALDGGRLLFLIVEAIRRKPLDSKKEGMVTVIGFALLMLLMVLVTWNDITRFFFK
>NZ_CP023643.1|WP_069125848.1|2561488_2562628_-|1-deoxy-D-xylulose-5-phosphate-reductoisomerase
MKISLLGATGSVGVQTLAVVRQHPAAFQIVALAFGSNIQKGAQIIREFSPEIVSVATKDIARQLAHQFPTVTFYHGMAGLIEVATFHKSTMLVNAILGSRGLLPTLRAIESHKTIALANKETLVTAGHLVMDAVKKHNVTLLPVDSEHSAIFQSLQGNSKRAVDSILLTASGGSFRDKTREQLANVTLADALNHPNWAMGPKITIDSATLFNKGLEVIEAHWLFGLPYDKINVTIHRESIIHSCVNYVDGSMIAQMGAPDMRLPIQYALTYPNRLPISYDEPFDLNKIGQLSFEAVDMKRFRALYLSYEAGKAGGSMPTVLNAANEVAVEAFLTKKISFLDIENLVEKAMLAHSIIKNPELETILAIETETRQRVTSWL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP023643_5	5.1\|1948893\|40\|NZ_CP023643\|CRISPRCasFinder	1948893-1948932	40	NZ_CP023643.1	97358-97397	0	1.0
NZ_CP023643_5	5.1\|1948893\|40\|NZ_CP023643\|CRISPRCasFinder	1948893-1948932	40	NZ_CP023643.1	97422-97461	0	1.0
NZ_CP023643_5	5.1\|1948893\|40\|NZ_CP023643\|CRISPRCasFinder	1948893-1948932	40	NZ_CP023643.1	2117147-2117186	0	1.0
NZ_CP023643_5	5.1\|1948893\|40\|NZ_CP023643\|CRISPRCasFinder	1948893-1948932	40	NZ_CP023643.1	2377633-2377672	1	0.975
NZ_CP023643_1	1.1\|57191\|49\|NZ_CP023643\|CRISPRCasFinder	57191-57239	49	NZ_CP023643.1	164166-164214	2	0.959
NZ_CP023643_5	5.1\|1948893\|40\|NZ_CP023643\|CRISPRCasFinder	1948893-1948932	40	NZ_CP023643.1	1476146-1476185	2	0.95
NZ_CP023643_6	6.1\|1981919\|35\|NZ_CP023643\|CRISPRCasFinder	1981919-1981953	35	NZ_CP023643.1	1981800-1981834	2	0.943

1. spacer 5.1|1948893|40|NZ_CP023643|CRISPRCasFinder matches to position: 97358-97397, mismatch: 0, identity: 1.0

gagattgcgtaagcaattgagtaccaatcagtagttagaa	CRISPR spacer
gagattgcgtaagcaattgagtaccaatcagtagttagaa	Protospacer
****************************************

2. spacer 5.1|1948893|40|NZ_CP023643|CRISPRCasFinder matches to position: 97422-97461, mismatch: 0, identity: 1.0

gagattgcgtaagcaattgagtaccaatcagtagttagaa	CRISPR spacer
gagattgcgtaagcaattgagtaccaatcagtagttagaa	Protospacer
****************************************

3. spacer 5.1|1948893|40|NZ_CP023643|CRISPRCasFinder matches to position: 2117147-2117186, mismatch: 0, identity: 1.0

gagattgcgtaagcaattgagtaccaatcagtagttagaa	CRISPR spacer
gagattgcgtaagcaattgagtaccaatcagtagttagaa	Protospacer
****************************************

4. spacer 5.1|1948893|40|NZ_CP023643|CRISPRCasFinder matches to position: 2377633-2377672, mismatch: 1, identity: 0.975

gagattgcgtaagcaattgagtaccaatcagtagttagaa	CRISPR spacer
gaaattgcgtaagcaattgagtaccaatcagtagttagaa	Protospacer
**.*************************************

5. spacer 1.1|57191|49|NZ_CP023643|CRISPRCasFinder matches to position: 164166-164214, mismatch: 2, identity: 0.959

gtatgggacggagcgacagcgagtaccactcctttgctaatatcgtagc	CRISPR spacer
gtatgggacggagcgcaagcgagtaccactcctttgctaatatcgtagc	Protospacer
***************  ********************************

6. spacer 5.1|1948893|40|NZ_CP023643|CRISPRCasFinder matches to position: 1476146-1476185, mismatch: 2, identity: 0.95

gagattgcgtaagcaattgagtaccaatcagtagttagaa	CRISPR spacer
gaaattgcgtaagcaattgagtaccaatcaatagttagaa	Protospacer
**.***************************.*********

7. spacer 6.1|1981919|35|NZ_CP023643|CRISPRCasFinder matches to position: 1981800-1981834, mismatch: 2, identity: 0.943

tttaatacaaggagtggtactcgcttgtgctccgt	CRISPR spacer
tttaacataaggagtggtactcgcttgtgctccgt	Protospacer
*****.*.***************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP023643_8	8.1\|2545276\|30\|NZ_CP023643\|CRISPRCasFinder,CRT	2545276-2545305	30	HM144385	Brochothrix phage NF5, complete genome	749-778	0	1.0
NZ_CP023643_8	8.7\|2545672\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2545672-2545701	30	NZ_CP011009	Bacillus simplex strain SH-B26 plasmid pSHB26, complete sequence	8375-8404	6	0.8
NZ_CP023643_8	8.8\|2545738\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2545738-2545767	30	NZ_CP011009	Bacillus simplex strain SH-B26 plasmid pSHB26, complete sequence	8375-8404	6	0.8
NZ_CP023643_8	8.14\|2546134\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2546134-2546163	30	MH363700	Vibrio phage VP-1, complete genome	145877-145906	6	0.8
NZ_CP023643_8	8.14\|2546134\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2546134-2546163	30	NC_048765	Vibrio phage VAP7, complete genome	23859-23888	6	0.8
NZ_CP023643_8	8.22\|2546662\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2546662-2546691	30	NZ_LR214939	Mycoplasma salivarium strain NCTC10113 plasmid 2	290150-290179	6	0.8
NZ_CP023643_8	8.22\|2546662\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2546662-2546691	30	AJ972879	Yersinia phage phiR1-37 complete genome	222894-222923	6	0.8
NZ_CP023643_8	8.22\|2546662\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2546662-2546691	30	NC_016163	Yersinia phage phiR1-37, complete genome	222894-222923	6	0.8
NZ_CP023643_8	8.24\|2546794\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2546794-2546823	30	MH363700	Vibrio phage VP-1, complete genome	145877-145906	6	0.8
NZ_CP023643_8	8.24\|2546794\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2546794-2546823	30	NC_048765	Vibrio phage VAP7, complete genome	23859-23888	6	0.8
NZ_CP023643_8	8.6\|2545606\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2545606-2545635	30	NZ_CP020435	Bacillus sp. FDAARGOS_235 plasmid 3, complete sequence	7026-7055	7	0.767
NZ_CP023643_8	8.6\|2545606\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2545606-2545635	30	MT074146	Bacteroides phage SJC03, complete genome	62690-62719	7	0.767
NZ_CP023643_8	8.6\|2545606\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2545606-2545635	30	MF988720	Pseudoalteromonas phage J2-1, complete genome	81991-82020	7	0.767
NZ_CP023643_8	8.6\|2545606\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2545606-2545635	30	AP013707	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C22-MedDCM-OCT-S25-C85, * SEQUENCING IN PROGRESS *	4267-4296	7	0.767
NZ_CP023643_8	8.6\|2545606\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2545606-2545635	30	AP014379	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S43-C51, * SEQUENCING IN PROGRESS *	8766-8795	7	0.767
NZ_CP023643_8	8.20\|2546530\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2546530-2546559	30	MN693179	Marine virus AFVG_25M461, complete genome	36383-36412	7	0.767
NZ_CP023643_8	8.20\|2546530\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2546530-2546559	30	MN693407	Marine virus AFVG_25M242, complete genome	36794-36823	7	0.767
NZ_CP023643_8	8.20\|2546530\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2546530-2546559	30	NC_023560	Oenococcus phage phiS13, complete genome	43344-43373	7	0.767
NZ_CP023643_8	8.22\|2546662\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2546662-2546691	30	NC_021277	Fusobacterium nucleatum subsp. animalis 4_8 plasmid unnamed, complete sequence	1149-1178	7	0.767
NZ_CP023643_8	8.3\|2545408\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2545408-2545437	30	MK658834	Staphylococcus virus Baq_Sau1, partial genome	13045-13074	8	0.733
NZ_CP023643_8	8.3\|2545408\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2545408-2545437	30	JX274646	Staphylococcus phage SP5, complete genome	30766-30795	8	0.733
NZ_CP023643_8	8.3\|2545408\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2545408-2545437	30	HQ127381	Staphylococcus phage TEM126, complete sequence	18524-18553	8	0.733
NZ_CP023643_8	8.3\|2545408\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2545408-2545437	30	EU861004	Staphylococcus phage phiSauS-IPLA88, complete genome	29047-29076	8	0.733
NZ_CP023643_8	8.3\|2545408\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2545408-2545437	30	KM389348	UNVERIFIED: Staphylococcus phage Phi06_3244 B clone contig00001 genomic sequence	8589-8618	8	0.733
NZ_CP023643_8	8.3\|2545408\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2545408-2545437	30	MG557619	Staphylococcus phage HSA84, complete genome	13868-13897	8	0.733
NZ_CP023643_8	8.3\|2545408\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2545408-2545437	30	KM389214	UNVERIFIED: Staphylococcus phage Phi05_1554 UV clone contig00001 genomic sequence	14873-14902	8	0.733
NZ_CP023643_8	8.3\|2545408\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2545408-2545437	30	NC_017968	Staphylococcus phage TEM123, complete genome	23009-23038	8	0.733
NZ_CP023643_8	8.6\|2545606\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2545606-2545635	30	MF417889	Uncultured Caudovirales phage clone 10S_14, partial genome	19282-19311	8	0.733
NZ_CP023643_8	8.6\|2545606\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2545606-2545635	30	JX238501	Bacillus phage phiAGATE, complete genome	141059-141088	8	0.733
NZ_CP023643_8	8.6\|2545606\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2545606-2545635	30	MF360958	Salicola phage SCTP-2, complete genome	194193-194222	8	0.733
NZ_CP023643_8	8.7\|2545672\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2545672-2545701	30	MN692999	Marine virus AFVG_117M75, complete genome	15751-15780	8	0.733
NZ_CP023643_8	8.8\|2545738\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2545738-2545767	30	MN692999	Marine virus AFVG_117M75, complete genome	15751-15780	8	0.733
NZ_CP023643_8	8.14\|2546134\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2546134-2546163	30	NZ_LT984809	Cupriavidus taiwanensis isolate Cupriavidus taiwanensis STM 8555 plasmid I, complete sequence	165063-165092	8	0.733
NZ_CP023643_8	8.17\|2546332\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2546332-2546361	30	NZ_CP004876	Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB299, complete sequence	63223-63252	8	0.733
NZ_CP023643_8	8.17\|2546332\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2546332-2546361	30	NC_017203	Bacillus thuringiensis serovar chinensis CT-43 plasmid pCT281, complete sequence	101104-101133	8	0.733
NZ_CP023643_8	8.17\|2546332\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2546332-2546361	30	NC_020384	Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-285, complete sequence	105327-105356	8	0.733
NZ_CP023643_8	8.17\|2546332\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2546332-2546361	30	NZ_CP010578	Bacillus thuringiensis serovar morrisoni strain BGSC 4AA1 plasmid pBMB232, complete sequence	31636-31665	8	0.733
NZ_CP023643_8	8.17\|2546332\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2546332-2546361	30	NZ_CP010579	Bacillus thuringiensis serovar morrisoni strain BGSC 4AA1 plasmid pBMB92, complete sequence	59874-59903	8	0.733
NZ_CP023643_8	8.17\|2546332\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2546332-2546361	30	NZ_CP015152	Bacillus thuringiensis strain Bc601 plasmid pBTBC2, complete sequence	101030-101059	8	0.733
NZ_CP023643_8	8.17\|2546332\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2546332-2546361	30	NZ_CP044979	Bacillus thuringiensis strain BT62 plasmid pBT62A, complete sequence	427110-427139	8	0.733
NZ_CP023643_8	8.17\|2546332\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2546332-2546361	30	NZ_CP004861	Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB293, complete sequence	63714-63743	8	0.733
NZ_CP023643_8	8.17\|2546332\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2546332-2546361	30	NZ_CP042875	Bacillus cereus strain 09 plasmid unnamed1, complete sequence	191152-191181	8	0.733
NZ_CP023643_8	8.17\|2546332\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2546332-2546361	30	NZ_CP011152	Bacillus cereus strain CMCC P0021 plasmid pRML04, complete sequence	164625-164654	8	0.733
NZ_CP023643_8	8.17\|2546332\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2546332-2546361	30	NZ_CP010091	Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB267, complete sequence	57987-58016	8	0.733
NZ_CP023643_8	8.17\|2546332\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2546332-2546361	30	NC_020394	Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-233, complete sequence	211399-211428	8	0.733
NZ_CP023643_8	8.17\|2546332\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2546332-2546361	30	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	84980-85009	8	0.733
NZ_CP023643_8	8.17\|2546332\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2546332-2546361	30	NZ_CP011350	Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence	462493-462522	8	0.733
NZ_CP023643_8	8.17\|2546332\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2546332-2546361	30	NZ_CP022446	Bacillus cereus C1L plasmid pC1L1, complete sequence	498947-498976	8	0.733
NZ_CP023643_8	8.17\|2546332\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2546332-2546361	30	NZ_CP013056	Bacillus thuringiensis strain YWC2-8 plasmid pYWC2-8-1, complete sequence	101554-101583	8	0.733
NZ_CP023643_8	8.17\|2546332\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2546332-2546361	30	NZ_AP014866	Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain plasmid pKK2, complete sequence	81700-81729	8	0.733
NZ_CP023643_8	8.17\|2546332\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2546332-2546361	30	NZ_CP011154	Bacillus cereus strain CMCC P0011 plasmid pRML05, complete sequence	382261-382290	8	0.733
NZ_CP023643_8	8.17\|2546332\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2546332-2546361	30	CP020755	Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-16, complete sequence	449377-449406	8	0.733
NZ_CP023643_8	8.17\|2546332\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2546332-2546361	30	NZ_CP021062	Bacillus thuringiensis strain ATCC 10792 plasmid poh1, complete sequence	80360-80389	8	0.733
NZ_CP023643_8	8.22\|2546662\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2546662-2546691	30	NZ_CP013122	Fusobacterium nucleatum subsp. polymorphum strain ChDC F306 plasmid unnamed1, complete sequence	12010-12039	8	0.733
NZ_CP023643_8	8.23\|2546728\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2546728-2546757	30	NC_015598	Lactobacillus kefiranofaciens ZW3 plasmid pWW1, complete sequence	135540-135569	8	0.733
NZ_CP023643_8	8.24\|2546794\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2546794-2546823	30	NZ_LT984809	Cupriavidus taiwanensis isolate Cupriavidus taiwanensis STM 8555 plasmid I, complete sequence	165063-165092	8	0.733
NZ_CP023643_8	8.25\|2546860\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2546860-2546889	30	NC_014457	Clostridium phage phiCTP1, complete genome	16964-16993	8	0.733
NZ_CP023643_8	8.9\|2545804\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2545804-2545833	30	NC_010555	Proteus mirabilis HI4320 plasmid pHI4320, complete sequence	18963-18992	9	0.7
NZ_CP023643_8	8.9\|2545804\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2545804-2545833	30	NZ_CP021855	Proteus mirabilis strain AR_0156 plasmid unitig_3, complete sequence	19298-19327	9	0.7
NZ_CP023643_8	8.9\|2545804\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2545804-2545833	30	NZ_KX832926	Providencia rettgeri strain 16pre36 plasmid p16Pre36-1, complete sequence	11655-11684	9	0.7
NZ_CP023643_8	8.9\|2545804\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2545804-2545833	30	NZ_CP026061	Proteus mirabilis strain FDAARGOS_80 plasmid unnamed2, complete sequence	14315-14344	9	0.7
NZ_CP023643_8	8.9\|2545804\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2545804-2545833	30	NZ_MK941846	Proteus mirabilis strain PM1157 plasmid pOXA-23, complete sequence	41290-41319	9	0.7
NZ_CP023643_8	8.9\|2545804\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2545804-2545833	30	NZ_MF150117	Proteus mirabilis strain A64421 plasmid pPM64421b, complete sequence	11878-11907	9	0.7
NZ_CP023643_8	8.18\|2546398\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2546398-2546427	30	MN062703	Microbacterium phage McGalleon, complete genome	36678-36707	9	0.7
NZ_CP023643_8	8.6\|2545606\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2545606-2545635	30	NZ_CP049229	Lactobacillus iners strain C0210C1 plasmid pC0210C1, complete sequence	65594-65623	10	0.667
NZ_CP023643_8	8.6\|2545606\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2545606-2545635	30	NZ_CP049227	Lactobacillus iners strain C0011D1 plasmid pC0011D1, complete sequence	74434-74463	10	0.667
NZ_CP023643_8	8.6\|2545606\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2545606-2545635	30	NZ_CP049224	Lactobacillus iners strain C0094A1 plasmid pC0094A1, complete sequence	91551-91580	10	0.667
NZ_CP023643_8	8.10\|2545870\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2545870-2545899	30	MT074459	Salmonella phage bastian, complete genome	69101-69130	10	0.667
NZ_CP023643_8	8.10\|2545870\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2545870-2545899	30	NC_047754	Escherichia phage APCEc03, complete genome	93486-93515	10	0.667
NZ_CP023643_8	8.10\|2545870\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2545870-2545899	30	KY114934	Salmonella phage SP01, complete genome	70967-70996	10	0.667
NZ_CP023643_8	8.10\|2545870\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2545870-2545899	30	MK947458	Salmonella phage vB_SenS_SB10, complete genome	55786-55815	10	0.667
NZ_CP023643_8	8.10\|2545870\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2545870-2545899	30	AY543070	Bacteriophage T5, complete genome	49396-49425	10	0.667
NZ_CP023643_8	8.10\|2545870\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2545870-2545899	30	AY587007	Bacteriophage T5 strain ATCC 11303-B5, complete genome	49316-49345	10	0.667
NZ_CP023643_8	8.10\|2545870\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2545870-2545899	30	NC_031022	Shigella phage SHSML-45, complete genome	70599-70628	10	0.667
NZ_CP023643_8	8.10\|2545870\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2545870-2545899	30	AY692264	Bacteriophage T5 strain st0 deletion mutant, complete genome	41191-41220	10	0.667
NZ_CP023643_8	8.10\|2545870\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2545870-2545899	30	MT653145	Salmonella phage 8sent65, complete genome	53642-53671	10	0.667
NZ_CP023643_8	8.10\|2545870\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2545870-2545899	30	NC_028754	Salmonella phage Shivani, complete genome	45205-45234	10	0.667
NZ_CP023643_8	8.10\|2545870\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2545870-2545899	30	NC_005859	Enterobacteria phage T5, complete genome	49396-49425	10	0.667
NZ_CP023643_8	8.10\|2545870\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2545870-2545899	30	MN445182	Salmonella phage vB_SalS_SA001, complete genome	45439-45468	10	0.667
NZ_CP023643_8	8.10\|2545870\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2545870-2545899	30	NC_047749	Enterobacteria phage DT571/2, complete genome	38774-38803	10	0.667
NZ_CP023643_8	8.10\|2545870\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2545870-2545899	30	KM979354	Enterobacteria phage DT57C, complete genome	39477-39506	10	0.667
NZ_CP023643_8	8.26\|2546926\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2546926-2546955	30	NC_047948	Staphylococcus phage phiSA_BS2, complete genome	6619-6648	10	0.667
NZ_CP023643_8	8.26\|2546926\|30\|NZ_CP023643\|CRISPRCasFinder,CRT,PILER-CR	2546926-2546955	30	MH078572	Staphylococcus phage phiSA_BS1, complete genome	109197-109226	10	0.667

1. spacer 8.1|2545276|30|NZ_CP023643|CRISPRCasFinder,CRT matches to HM144385 (Brochothrix phage NF5, complete genome) position: , mismatch: 0, identity: 1.0

cgtgggaattatatgatattccgaggcgct	CRISPR spacer
cgtgggaattatatgatattccgaggcgct	Protospacer
******************************

2. spacer 8.7|2545672|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011009 (Bacillus simplex strain SH-B26 plasmid pSHB26, complete sequence) position: , mismatch: 6, identity: 0.8

ataacacctaacatacctgttgcaccatat	CRISPR spacer
aactgacctaccatacctgttacaccatat	Protospacer
*    ***** **********.********

3. spacer 8.8|2545738|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011009 (Bacillus simplex strain SH-B26 plasmid pSHB26, complete sequence) position: , mismatch: 6, identity: 0.8

ataacacctaacatacctgttgcaccatat	CRISPR spacer
aactgacctaccatacctgttacaccatat	Protospacer
*    ***** **********.********

4. spacer 8.14|2546134|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to MH363700 (Vibrio phage VP-1, complete genome) position: , mismatch: 6, identity: 0.8

ttcatgataattattcctttg--gacgttcct	CRISPR spacer
ttcatgataatgattcctttgttgaggtgg--	Protospacer
*********** *********  ** **

5. spacer 8.14|2546134|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to NC_048765 (Vibrio phage VAP7, complete genome) position: , mismatch: 6, identity: 0.8

ttcatgataattattcctttg--gacgttcct	CRISPR spacer
ttcatgataatgattcctttgttgaggtgg--	Protospacer
*********** *********  ** **

6. spacer 8.22|2546662|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR214939 (Mycoplasma salivarium strain NCTC10113 plasmid 2) position: , mismatch: 6, identity: 0.8

gaagatgataaggaaattgcttttagtgat	CRISPR spacer
gaagatgataagacaattgctttcttagat	Protospacer
************. *********.   ***

7. spacer 8.22|2546662|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to AJ972879 (Yersinia phage phiR1-37 complete genome) position: , mismatch: 6, identity: 0.8

gaagatgataaggaaattgct---tttagtgat	CRISPR spacer
gacgatgataaggaaattgctaggttaaat---	Protospacer
** ******************   ** *.*

8. spacer 8.22|2546662|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to NC_016163 (Yersinia phage phiR1-37, complete genome) position: , mismatch: 6, identity: 0.8

gaagatgataaggaaattgct---tttagtgat	CRISPR spacer
gacgatgataaggaaattgctaggttaaat---	Protospacer
** ******************   ** *.*

9. spacer 8.24|2546794|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to MH363700 (Vibrio phage VP-1, complete genome) position: , mismatch: 6, identity: 0.8

ttcatgataattattcctttg--gacgttcct	CRISPR spacer
ttcatgataatgattcctttgttgaggtgg--	Protospacer
*********** *********  ** **

10. spacer 8.24|2546794|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to NC_048765 (Vibrio phage VAP7, complete genome) position: , mismatch: 6, identity: 0.8

ttcatgataattattcctttg--gacgttcct	CRISPR spacer
ttcatgataatgattcctttgttgaggtgg--	Protospacer
*********** *********  ** **

11. spacer 8.6|2545606|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020435 (Bacillus sp. FDAARGOS_235 plasmid 3, complete sequence) position: , mismatch: 7, identity: 0.767

ttaataaagattacgaaaaagaaatgcgtg	CRISPR spacer
ttaaaaaagattacgaaatagaaaaagcag	Protospacer
**** ************* ***** .   *

12. spacer 8.6|2545606|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to MT074146 (Bacteroides phage SJC03, complete genome) position: , mismatch: 7, identity: 0.767

ttaataaagattacgaaaaagaaatgcgtg	CRISPR spacer
ttaataaagattatgacaaagaaagaaata	Protospacer
*************.** ******* . .*.

13. spacer 8.6|2545606|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to MF988720 (Pseudoalteromonas phage J2-1, complete genome) position: , mismatch: 7, identity: 0.767

ttaataaagattacgaaaaagaaatgcgtg	CRISPR spacer
taaataaaaactacgaaaaagaaatgtaaa	Protospacer
* ******.*.***************.. .

14. spacer 8.6|2545606|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to AP013707 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C22-MedDCM-OCT-S25-C85, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.767

ttaataaagattacgaaaaagaaatgcgtg	CRISPR spacer
ttaatatagcttacgaaaaagaaagagata	Protospacer
****** ** ************** . .*.

15. spacer 8.6|2545606|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to AP014379 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S43-C51, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.767

ttaataaagattacgaaaaag---aaatgcgtg	CRISPR spacer
ttaataaagattactaaaaagtataatcac---	Protospacer
************** ******   ** ..*

16. spacer 8.20|2546530|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to MN693179 (Marine virus AFVG_25M461, complete genome) position: , mismatch: 7, identity: 0.767

tcagggatatagagcgcttttgttgattca	CRISPR spacer
taaatcctatagaacgcatttgttgattca	Protospacer
* *.   ******.*** ************

17. spacer 8.20|2546530|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to MN693407 (Marine virus AFVG_25M242, complete genome) position: , mismatch: 7, identity: 0.767

tcagggatatagagcgcttttgttgattca	CRISPR spacer
taaatcctatagaacgcatttgttgattca	Protospacer
* *.   ******.*** ************

18. spacer 8.20|2546530|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to NC_023560 (Oenococcus phage phiS13, complete genome) position: , mismatch: 7, identity: 0.767

tcagggatatagagcgcttttgttgattca	CRISPR spacer
agattgatatagagcttttttgttgattaa	Protospacer
  *  ********** .*********** *

19. spacer 8.22|2546662|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to NC_021277 (Fusobacterium nucleatum subsp. animalis 4_8 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gaagatgataaggaaattgcttttagtgat	CRISPR spacer
gcagatgataaagaaattgcatttaaacaa	Protospacer
* *********.******** ****.  *

20. spacer 8.3|2545408|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to MK658834 (Staphylococcus virus Baq_Sau1, partial genome) position: , mismatch: 8, identity: 0.733

ataacttttgatagtctcgaatactcaccg	CRISPR spacer
ttaacttttgatattctcgaaaacaaatac	Protospacer
 ************ ******* **  *.

21. spacer 8.3|2545408|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to JX274646 (Staphylococcus phage SP5, complete genome) position: , mismatch: 8, identity: 0.733

ataacttttgatagtctcgaatactcaccg	CRISPR spacer
ttaacttttgatattctcgaaaacaaatac	Protospacer
 ************ ******* **  *.

22. spacer 8.3|2545408|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to HQ127381 (Staphylococcus phage TEM126, complete sequence) position: , mismatch: 8, identity: 0.733

ataacttttgatagtctcgaatactcaccg	CRISPR spacer
ttaacttttgatattctcgaaaacaaatac	Protospacer
 ************ ******* **  *.

23. spacer 8.3|2545408|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to EU861004 (Staphylococcus phage phiSauS-IPLA88, complete genome) position: , mismatch: 8, identity: 0.733

ataacttttgatagtctcgaatactcaccg	CRISPR spacer
ttaacttttgatattctcgaaaacaaatac	Protospacer
 ************ ******* **  *.

24. spacer 8.3|2545408|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to KM389348 (UNVERIFIED: Staphylococcus phage Phi06_3244 B clone contig00001 genomic sequence) position: , mismatch: 8, identity: 0.733

ataacttttgatagtctcgaatactcaccg	CRISPR spacer
ttaacttttgatattctcgaaaacaaatac	Protospacer
 ************ ******* **  *.

25. spacer 8.3|2545408|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to MG557619 (Staphylococcus phage HSA84, complete genome) position: , mismatch: 8, identity: 0.733

ataacttttgatagtctcgaatactcaccg	CRISPR spacer
ttaacttttgatattctcgaaaacaaatac	Protospacer
 ************ ******* **  *.

26. spacer 8.3|2545408|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to KM389214 (UNVERIFIED: Staphylococcus phage Phi05_1554 UV clone contig00001 genomic sequence) position: , mismatch: 8, identity: 0.733

ataacttttgatagtctcgaatactcaccg	CRISPR spacer
ttaacttttgatattctcgaaaacaaatac	Protospacer
 ************ ******* **  *.

27. spacer 8.3|2545408|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to NC_017968 (Staphylococcus phage TEM123, complete genome) position: , mismatch: 8, identity: 0.733

ataacttttgatagtctcgaatactcaccg	CRISPR spacer
ttaacttttgatattctcgaaaacaaatac	Protospacer
 ************ ******* **  *.

28. spacer 8.6|2545606|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to MF417889 (Uncultured Caudovirales phage clone 10S_14, partial genome) position: , mismatch: 8, identity: 0.733

ttaataaagattacgaaaaagaaatgcgtg-	CRISPR spacer
aatataaagatgacgaaaaagaaat-tatac	Protospacer
   ******** ************* ..*.

29. spacer 8.6|2545606|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to JX238501 (Bacillus phage phiAGATE, complete genome) position: , mismatch: 8, identity: 0.733

ttaataaagattacgaaaaagaaatgcgtg	CRISPR spacer
ctaataaacattacaaaaaagaaaataccg	Protospacer
.******* *****.*********    .*

30. spacer 8.6|2545606|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to MF360958 (Salicola phage SCTP-2, complete genome) position: , mismatch: 8, identity: 0.733

ttaataaagattacgaaaaagaaatgcgtg	CRISPR spacer
ttagtaaagatttcgaaaaagaattttcga	Protospacer
***.******** ********** * .  .

31. spacer 8.7|2545672|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to MN692999 (Marine virus AFVG_117M75, complete genome) position: , mismatch: 8, identity: 0.733

ataacacctaacatacctgttgcaccatat	CRISPR spacer
gttccaccaaacatacctgttgcatcagca	Protospacer
.*  **** ***************.**

32. spacer 8.8|2545738|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to MN692999 (Marine virus AFVG_117M75, complete genome) position: , mismatch: 8, identity: 0.733

ataacacctaacatacctgttgcaccatat	CRISPR spacer
gttccaccaaacatacctgttgcatcagca	Protospacer
.*  **** ***************.**

33. spacer 8.14|2546134|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LT984809 (Cupriavidus taiwanensis isolate Cupriavidus taiwanensis STM 8555 plasmid I, complete sequence) position: , mismatch: 8, identity: 0.733

ttcatgataattattcctttggacgttcct	CRISPR spacer
gaaatgataattatttatttggacgttgaa	Protospacer
   ************. **********

34. spacer 8.17|2546332|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP004876 (Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB299, complete sequence) position: , mismatch: 8, identity: 0.733

atagaagaccaattgttataaagatacatc	CRISPR spacer
aagagggacaaattgttgtaaagatacata	Protospacer
* ....*** *******.***********

35. spacer 8.17|2546332|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to NC_017203 (Bacillus thuringiensis serovar chinensis CT-43 plasmid pCT281, complete sequence) position: , mismatch: 8, identity: 0.733

atagaagaccaattgttataaagatacatc	CRISPR spacer
aagagggacaaattgttgtaaagatacata	Protospacer
* ....*** *******.***********

36. spacer 8.17|2546332|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to NC_020384 (Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-285, complete sequence) position: , mismatch: 8, identity: 0.733

atagaagaccaattgttataaagatacatc	CRISPR spacer
aagagggacaaattgttgtaaagatacata	Protospacer
* ....*** *******.***********

37. spacer 8.17|2546332|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010578 (Bacillus thuringiensis serovar morrisoni strain BGSC 4AA1 plasmid pBMB232, complete sequence) position: , mismatch: 8, identity: 0.733

atagaagaccaattgttataaagatacatc	CRISPR spacer
aagagggacaaattgttgtaaagatacata	Protospacer
* ....*** *******.***********

38. spacer 8.17|2546332|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010579 (Bacillus thuringiensis serovar morrisoni strain BGSC 4AA1 plasmid pBMB92, complete sequence) position: , mismatch: 8, identity: 0.733

atagaagaccaattgttataaagatacatc	CRISPR spacer
aagagggacaaattgttgtaaagatacata	Protospacer
* ....*** *******.***********

39. spacer 8.17|2546332|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015152 (Bacillus thuringiensis strain Bc601 plasmid pBTBC2, complete sequence) position: , mismatch: 8, identity: 0.733

atagaagaccaattgttataaagatacatc	CRISPR spacer
aagagggacaaattgttgtaaagatacata	Protospacer
* ....*** *******.***********

40. spacer 8.17|2546332|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044979 (Bacillus thuringiensis strain BT62 plasmid pBT62A, complete sequence) position: , mismatch: 8, identity: 0.733

atagaagaccaattgttataaagatacatc	CRISPR spacer
aagagggacaaattgttgtaaagatacata	Protospacer
* ....*** *******.***********

41. spacer 8.17|2546332|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP004861 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB293, complete sequence) position: , mismatch: 8, identity: 0.733

atagaagaccaattgttataaagatacatc	CRISPR spacer
aagagggacaaattgttgtaaagatacata	Protospacer
* ....*** *******.***********

42. spacer 8.17|2546332|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042875 (Bacillus cereus strain 09 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

atagaagaccaattgttataaagatacatc	CRISPR spacer
aagagggacaaattgttgtaaagatacata	Protospacer
* ....*** *******.***********

43. spacer 8.17|2546332|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011152 (Bacillus cereus strain CMCC P0021 plasmid pRML04, complete sequence) position: , mismatch: 8, identity: 0.733

atagaagaccaattgttataaagatacatc	CRISPR spacer
aagagggacaaattgttgtaaagatacata	Protospacer
* ....*** *******.***********

44. spacer 8.17|2546332|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010091 (Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB267, complete sequence) position: , mismatch: 8, identity: 0.733

atagaagaccaattgttataaagatacatc	CRISPR spacer
aagagggacaaattgttgtaaagatacata	Protospacer
* ....*** *******.***********

45. spacer 8.17|2546332|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to NC_020394 (Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-233, complete sequence) position: , mismatch: 8, identity: 0.733

atagaagaccaattgttataaagatacatc	CRISPR spacer
aagagggacaaattgttgtaaagatacata	Protospacer
* ....*** *******.***********

46. spacer 8.17|2546332|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 8, identity: 0.733

atagaagaccaattgttataaagatacatc	CRISPR spacer
aagagggacaaattgttgtaaagatacata	Protospacer
* ....*** *******.***********

47. spacer 8.17|2546332|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011350 (Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence) position: , mismatch: 8, identity: 0.733

atagaagaccaattgttataaagatacatc	CRISPR spacer
aagagggacaaattgttgtaaagatacata	Protospacer
* ....*** *******.***********

48. spacer 8.17|2546332|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022446 (Bacillus cereus C1L plasmid pC1L1, complete sequence) position: , mismatch: 8, identity: 0.733

atagaagaccaattgttataaagatacatc	CRISPR spacer
aagagggacaaattgttgtaaagatacata	Protospacer
* ....*** *******.***********

49. spacer 8.17|2546332|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013056 (Bacillus thuringiensis strain YWC2-8 plasmid pYWC2-8-1, complete sequence) position: , mismatch: 8, identity: 0.733

atagaagaccaattgttataaagatacatc	CRISPR spacer
aagagggacaaattgttgtaaagatacata	Protospacer
* ....*** *******.***********

50. spacer 8.17|2546332|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014866 (Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain plasmid pKK2, complete sequence) position: , mismatch: 8, identity: 0.733

atagaagaccaattgttataaagatacatc	CRISPR spacer
aagagggacaaattgttgtaaagatacata	Protospacer
* ....*** *******.***********

51. spacer 8.17|2546332|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011154 (Bacillus cereus strain CMCC P0011 plasmid pRML05, complete sequence) position: , mismatch: 8, identity: 0.733

atagaagaccaattgttataaagatacatc	CRISPR spacer
aagagggacaaattgttgtaaagatacata	Protospacer
* ....*** *******.***********

52. spacer 8.17|2546332|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to CP020755 (Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-16, complete sequence) position: , mismatch: 8, identity: 0.733

atagaagaccaattgttataaagatacatc	CRISPR spacer
aagagggacaaattgttgtaaagatacata	Protospacer
* ....*** *******.***********

53. spacer 8.17|2546332|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021062 (Bacillus thuringiensis strain ATCC 10792 plasmid poh1, complete sequence) position: , mismatch: 8, identity: 0.733

atagaagaccaattgttataaagatacatc	CRISPR spacer
aagagggacaaattgttgtaaagatacata	Protospacer
* ....*** *******.***********

54. spacer 8.22|2546662|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013122 (Fusobacterium nucleatum subsp. polymorphum strain ChDC F306 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

gaagatgataaggaaattgcttttagtgat	CRISPR spacer
tcagatgataaagaaattgcatttaaacaa	Protospacer
  *********.******** ****.  *

55. spacer 8.23|2546728|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to NC_015598 (Lactobacillus kefiranofaciens ZW3 plasmid pWW1, complete sequence) position: , mismatch: 8, identity: 0.733

tccgtcatcatgtccgtttctctgaaacca	CRISPR spacer
gtatcaatcatgtccgtttctcttaaagca	Protospacer
 .  . ***************** *** **

56. spacer 8.24|2546794|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LT984809 (Cupriavidus taiwanensis isolate Cupriavidus taiwanensis STM 8555 plasmid I, complete sequence) position: , mismatch: 8, identity: 0.733

ttcatgataattattcctttggacgttcct	CRISPR spacer
gaaatgataattatttatttggacgttgaa	Protospacer
   ************. **********

57. spacer 8.25|2546860|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to NC_014457 (Clostridium phage phiCTP1, complete genome) position: , mismatch: 8, identity: 0.733

ttagtaaaaaaacgggtgtgccactaaata	CRISPR spacer
gtgataaaaaaactggtttgccactaatag	Protospacer
 *..********* *** *********  .

58. spacer 8.9|2545804|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to NC_010555 (Proteus mirabilis HI4320 plasmid pHI4320, complete sequence) position: , mismatch: 9, identity: 0.7

atgttttgtgttttctgcttccgttagcca	CRISPR spacer
tggttttgtgttttccgctttcgttgctgc	Protospacer
  *************.****.****. .

59. spacer 8.9|2545804|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021855 (Proteus mirabilis strain AR_0156 plasmid unitig_3, complete sequence) position: , mismatch: 9, identity: 0.7

atgttttgtgttttctgcttccgttagcca	CRISPR spacer
tggttttgtgttttccgctttcgttgctgc	Protospacer
  *************.****.****. .

60. spacer 8.9|2545804|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KX832926 (Providencia rettgeri strain 16pre36 plasmid p16Pre36-1, complete sequence) position: , mismatch: 9, identity: 0.7

atgttttgtgttttctgcttccgttagcca	CRISPR spacer
tggttttgtgttttccgctttcgttgctgc	Protospacer
  *************.****.****. .

61. spacer 8.9|2545804|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026061 (Proteus mirabilis strain FDAARGOS_80 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.7

atgttttgtgttttctgcttccgttagcca	CRISPR spacer
tggttttgtgttttccgctttcgttgctgc	Protospacer
  *************.****.****. .

62. spacer 8.9|2545804|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MK941846 (Proteus mirabilis strain PM1157 plasmid pOXA-23, complete sequence) position: , mismatch: 9, identity: 0.7

atgttttgtgttttctgcttccgttagcca	CRISPR spacer
tggttttgtgttttccgctttcgttgctgc	Protospacer
  *************.****.****. .

63. spacer 8.9|2545804|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MF150117 (Proteus mirabilis strain A64421 plasmid pPM64421b, complete sequence) position: , mismatch: 9, identity: 0.7

atgttttgtgttttctgcttccgttagcca	CRISPR spacer
tggttttgtgttttccgctttcgttgctgc	Protospacer
  *************.****.****. .

64. spacer 8.18|2546398|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to MN062703 (Microbacterium phage McGalleon, complete genome) position: , mismatch: 9, identity: 0.7

tcaggagcagcggtcgtgacattcacatta	CRISPR spacer
acaggagcagcagtcgtgaccttctgggat	Protospacer
 **********.******** ***  .

65. spacer 8.6|2545606|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049229 (Lactobacillus iners strain C0210C1 plasmid pC0210C1, complete sequence) position: , mismatch: 10, identity: 0.667

ttaataaagattacgaaaaagaaatgcgtg	CRISPR spacer
aagtaaaagataacgaaaaagaaatgaaca	Protospacer
  .  ****** ************** ...

66. spacer 8.6|2545606|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049227 (Lactobacillus iners strain C0011D1 plasmid pC0011D1, complete sequence) position: , mismatch: 10, identity: 0.667

ttaataaagattacgaaaaagaaatgcgtg	CRISPR spacer
aagtaaaagataacgaaaaagaaatgaaca	Protospacer
  .  ****** ************** ...

67. spacer 8.6|2545606|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049224 (Lactobacillus iners strain C0094A1 plasmid pC0094A1, complete sequence) position: , mismatch: 10, identity: 0.667

ttaataaagattacgaaaaagaaatgcgtg	CRISPR spacer
aagtaaaagataacgaaaaagaaatgaaca	Protospacer
  .  ****** ************** ...

68. spacer 8.10|2545870|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to MT074459 (Salmonella phage bastian, complete genome) position: , mismatch: 10, identity: 0.667

acatttttattagctcgctcccaatttaaa	CRISPR spacer
ctggcgttattagctcgctctcaattttgg	Protospacer
 .. . **************.****** ..

69. spacer 8.10|2545870|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to NC_047754 (Escherichia phage APCEc03, complete genome) position: , mismatch: 10, identity: 0.667

acatttttattagctcgctcccaatttaaa	CRISPR spacer
ctggcgttattagctcgctctcaattttgg	Protospacer
 .. . **************.****** ..

70. spacer 8.10|2545870|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to KY114934 (Salmonella phage SP01, complete genome) position: , mismatch: 10, identity: 0.667

acatttttattagctcgctcccaatttaaa	CRISPR spacer
ctggcgttattagctcgctctcaattttgg	Protospacer
 .. . **************.****** ..

71. spacer 8.10|2545870|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to MK947458 (Salmonella phage vB_SenS_SB10, complete genome) position: , mismatch: 10, identity: 0.667

acatttttattagctcgctcccaatttaaa	CRISPR spacer
ctggcgttattagctcgctctcaattttgg	Protospacer
 .. . **************.****** ..

72. spacer 8.10|2545870|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to AY543070 (Bacteriophage T5, complete genome) position: , mismatch: 10, identity: 0.667

acatttttattagctcgctcccaatttaaa	CRISPR spacer
ctggcgttattagctcgctctcaattttgg	Protospacer
 .. . **************.****** ..

73. spacer 8.10|2545870|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to AY587007 (Bacteriophage T5 strain ATCC 11303-B5, complete genome) position: , mismatch: 10, identity: 0.667

acatttttattagctcgctcccaatttaaa	CRISPR spacer
ctggcgttattagctcgctctcaattttgg	Protospacer
 .. . **************.****** ..

74. spacer 8.10|2545870|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to NC_031022 (Shigella phage SHSML-45, complete genome) position: , mismatch: 10, identity: 0.667

acatttttattagctcgctcccaatttaaa	CRISPR spacer
ctggcgttattagctcgctctcaattttgg	Protospacer
 .. . **************.****** ..

75. spacer 8.10|2545870|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to AY692264 (Bacteriophage T5 strain st0 deletion mutant, complete genome) position: , mismatch: 10, identity: 0.667

acatttttattagctcgctcccaatttaaa	CRISPR spacer
ctggcgttattagctcgctctcaattttgg	Protospacer
 .. . **************.****** ..

76. spacer 8.10|2545870|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to MT653145 (Salmonella phage 8sent65, complete genome) position: , mismatch: 10, identity: 0.667

acatttttattagctcgctcccaatttaaa	CRISPR spacer
ctggcgttattagctcgctctcaattttgg	Protospacer
 .. . **************.****** ..

77. spacer 8.10|2545870|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to NC_028754 (Salmonella phage Shivani, complete genome) position: , mismatch: 10, identity: 0.667

acatttttattagctcgctcccaatttaaa	CRISPR spacer
ctggcgttattagctcgctctcaattttgg	Protospacer
 .. . **************.****** ..

78. spacer 8.10|2545870|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to NC_005859 (Enterobacteria phage T5, complete genome) position: , mismatch: 10, identity: 0.667

acatttttattagctcgctcccaatttaaa	CRISPR spacer
ctggcgttattagctcgctctcaattttgg	Protospacer
 .. . **************.****** ..

79. spacer 8.10|2545870|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to MN445182 (Salmonella phage vB_SalS_SA001, complete genome) position: , mismatch: 10, identity: 0.667

acatttttattagctcgctcccaatttaaa	CRISPR spacer
ctggcgttattagctcgctctcaattttgg	Protospacer
 .. . **************.****** ..

80. spacer 8.10|2545870|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to NC_047749 (Enterobacteria phage DT571/2, complete genome) position: , mismatch: 10, identity: 0.667

acatttttattagctcgctcccaatttaaa	CRISPR spacer
ctggcgttattagctcgctctcaattttgg	Protospacer
 .. . **************.****** ..

81. spacer 8.10|2545870|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to KM979354 (Enterobacteria phage DT57C, complete genome) position: , mismatch: 10, identity: 0.667

acatttttattagctcgctcccaatttaaa	CRISPR spacer
ctggcgttattagctcgctctcaattttgg	Protospacer
 .. . **************.****** ..

82. spacer 8.26|2546926|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to NC_047948 (Staphylococcus phage phiSA_BS2, complete genome) position: , mismatch: 10, identity: 0.667

acaacgattgacacacctaactttgaaaca	CRISPR spacer
ttttgttttgagacacctaactttgaaaac	Protospacer
 .     **** ****************

83. spacer 8.26|2546926|30|NZ_CP023643|CRISPRCasFinder,CRT,PILER-CR matches to MH078572 (Staphylococcus phage phiSA_BS1, complete genome) position: , mismatch: 10, identity: 0.667

acaacgattgacacacctaactttgaaaca	CRISPR spacer
ttttgttttgagacacctaactttgaaaac	Protospacer
 .     **** ****************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

184613 : 194682

Bacillus_virus(28.57%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069126547.1\|184613_185438_-	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	3.8e-72	55.9
WP_069126548.1\|185453_186947_-	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	8.9e-112	46.8
WP_069126550.1\|187220_187604_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA
WP_069141940.1\|187858_189241_+	LysM peptidoglycan-binding domain-containing protein	Q9ZXE4	Bacillus_phage	9.7e-20	42.4
WP_096699230.1\|189524_190826_+\|transposase	ISL3 family transposase	Q6V7R1	Burkholderia_virus	1.2e-11	23.2
WP_096699233.1\|191057_191933_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	2.3e-06	28.8
WP_029092153.1\|191956_193687_-	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	1.9e-145	46.5
WP_069120269.1\|193716_194682_-	glycosyltransferase family 2 protein	U5P087	Shigella_phage	6.3e-66	42.5

DBSCAN-SWA_2

237983 : 285490

Brochothrix_phage(54.17%)

protease,plate,transposase,holin,bacteriocin,tail,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069120071.1\|237983_238325_-\|protease	ribosomal-processing cysteine protease Prp	NA	NA	NA	NA
WP_029092189.1\|238353_238662_-	50S ribosomal protein L21	NA	NA	NA	NA
WP_069125239.1\|238816_239197_-	RidA family protein	NA	NA	NA	NA
WP_096699235.1\|239551_240853_+\|transposase	ISL3 family transposase	Q6V7R1	Burkholderia_virus	1.6e-11	23.2
WP_029092191.1\|241086_241881_-	septum site-determining protein MinD	NA	NA	NA	NA
WP_069120080.1\|241883_242567_-	hypothetical protein	NA	NA	NA	NA
WP_069120082.1\|242599_243151_-	rod shape-determining protein MreD	NA	NA	NA	NA
WP_036027602.1\|243168_244020_-	rod shape-determining protein MreC	NA	NA	NA	NA
WP_029092192.1\|244098_245115_-	rod shape-determining protein	NA	NA	NA	NA
WP_069120084.1\|245434_246109_-	DNA repair protein RadC	NA	NA	NA	NA
WP_069126064.1\|246087_246768_-	prepilin peptidase	NA	NA	NA	NA
WP_069126065.1\|246968_248276_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA
WP_096699469.1\|248294_250934_-\|tRNA	valine--tRNA ligase	A0A1V0S951	Catovirus	6.3e-153	40.7
WP_029092197.1\|251221_252535_-	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA
WP_029092198.1\|252546_253128_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA
WP_069120097.1\|253228_254482_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	8.5e-140	61.2
WP_029092200.1\|254739_256020_-	trigger factor	NA	NA	NA	NA
WP_069126066.1\|256154_257015_-	hypothetical protein	NA	NA	NA	NA
WP_069126068.1\|257098_257398_+	hypothetical protein	NA	NA	NA	NA
WP_069126070.1\|258384_258684_-	hypothetical protein	NA	NA	NA	NA
WP_069126629.1\|258789_259608_-	HNH endonuclease	NA	NA	NA	NA
WP_069126630.1\|259609_261082_-	AAA family ATPase	K7PHD1	Enterobacteria_phage	4.9e-30	24.4
WP_069134798.1\|262652_263576_-	hypothetical protein	NA	NA	NA	NA
WP_141691204.1\|263745_264351_-	hypothetical protein	NA	NA	NA	NA
WP_069133585.1\|264460_265132_+	hypothetical protein	NA	NA	NA	NA
WP_069126683.1\|265143_265578_-	hypothetical protein	A0A2I7SC40	Paenibacillus_phage	1.6e-13	31.0
WP_069126681.1\|265593_266046_-	RusA family crossover junction endodeoxyribonuclease	D7RWN7	Brochothrix_phage	2.0e-22	44.8
WP_069126680.1\|266042_266240_-	hypothetical protein	NA	NA	NA	NA
WP_069126678.1\|266240_266675_-	DnaD domain protein	A8ASN4	Listeria_phage	1.4e-12	29.5
WP_069120909.1\|267426_267711_+	DUF2089 family protein	NA	NA	NA	NA
WP_069126046.1\|267694_267985_+	hypothetical protein	NA	NA	NA	NA
WP_069126048.1\|268596_268884_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_029092205.1\|269070_269547_-	peptide-methionine (S)-S-oxide reductase	NA	NA	NA	NA
WP_069126051.1\|269672_270512_-	glycoside hydrolase family protein	B7SSN6	Bacillus_phage	3.3e-39	57.3
WP_069126052.1\|270692_271505_-	SH3 domain-containing protein	D7RWK6	Brochothrix_phage	1.5e-89	61.3
WP_029092207.1\|271508_271784_-\|holin	phage holin	D7RWE6	Brochothrix_phage	2.2e-32	79.8
WP_029092208.1\|271796_272018_-\|holin	holin	Q77MU0	Lactococcus_phage	3.0e-08	38.4
WP_081312083.1\|272017_272182_-	XkdX family protein	NA	NA	NA	NA
WP_069126053.1\|272184_272490_-	DUF2977 domain-containing protein	A0EWU4	Staphylococcus_virus	6.0e-07	33.8
WP_069126055.1\|272489_274187_-\|plate	phage baseplate upper protein	D7RWE2	Brochothrix_phage	1.0e-42	47.3
WP_069126057.1\|274211_276605_-\|plate	BppU family phage baseplate upper protein	D7RWE1	Brochothrix_phage	6.5e-88	38.6
WP_069126058.1\|276617_279368_-	peptidoglycan DD-metalloendopeptidase family protein	D7RWE0	Brochothrix_phage	0.0e+00	74.8
WP_069126060.1\|279364_280132_-\|tail	phage tail family protein	D7RWD9	Brochothrix_phage	9.6e-78	56.1
WP_069126061.1\|280147_281533_-	hypothetical protein	D7RWD8	Brochothrix_phage	8.6e-85	50.9
WP_069120357.1\|281547_281835_-	hypothetical protein	D7RWD7	Brochothrix_phage	6.0e-25	60.9
WP_029092213.1\|281894_282242_-	hypothetical protein	D7RWD6	Brochothrix_phage	5.9e-51	88.7
WP_069126063.1\|282323_282848_-\|tail	phage major tail protein, TP901-1 family	D7RWD5	Brochothrix_phage	3.2e-64	75.0
WP_069120353.1\|283397_283889_-	hypothetical protein	D7RWH7	Brochothrix_phage	1.8e-37	50.3
WP_036027683.1\|283936_284158_-	hypothetical protein	D7RWH2	Brochothrix_phage	5.5e-18	65.7
WP_029092217.1\|284442_284640_-	helix-turn-helix transcriptional regulator	A0A1X9I583	Streptococcus_phage	7.1e-09	50.0
WP_036027603.1\|284824_285490_+	LexA family transcriptional regulator	A0A2I7SCV6	Paenibacillus_phage	9.7e-26	36.6

DBSCAN-SWA_3

470982 : 506873

Streptococcus_phage(22.22%)

protease,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_029092384.1\|470982_472005_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	8.1e-64	43.3
WP_069125671.1\|472016_473402_-	class II fumarate hydratase	NA	NA	NA	NA
WP_069125673.1\|473406_473880_-	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA
WP_029092387.1\|473879_474584_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
WP_029092388.1\|474577_475033_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
WP_069125674.1\|475102_476269_-	rod shape-determining protein RodA	NA	NA	NA	NA
WP_069125676.1\|476520_477732_-	aspartate kinase	NA	NA	NA	NA
WP_069125677.1\|478097_479261_-	acetylornithine transaminase	A0A1V0SKB7	Klosneuvirus	2.8e-20	26.9
WP_029092392.1\|479261_480011_-	acetylglutamate kinase	NA	NA	NA	NA
WP_069118553.1\|480025_481228_-	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA
WP_069125679.1\|481243_482269_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
WP_069118550.1\|482428_484201_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_029092396.1\|484373_485360_+	hypothetical protein	NA	NA	NA	NA
WP_069125680.1\|485755_486304_-	hypothetical protein	NA	NA	NA	NA
WP_036027713.1\|486322_486790_-\|protease	matrixin family metalloprotease	NA	NA	NA	NA
WP_029092399.1\|487086_487404_-	thioredoxin	A0A1J0GW78	Streptomyces_phage	1.3e-17	45.1
WP_029092400.1\|487525_489880_-	endonuclease MutS2	Q94M10	Lactobacillus_phage	2.5e-15	55.4
WP_029092401.1\|489904_490432_-	CvpA family protein	NA	NA	NA	NA
WP_069125682.1\|490649_491252_+	nitroreductase family protein	NA	NA	NA	NA
WP_069125683.1\|491327_493736_-\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_029092404.1\|493748_494792_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2I2L4E3	Orpheovirus	3.9e-29	35.7
WP_029092405.1\|495117_495459_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_069118544.1\|495553_496018_-	dUTP diphosphatase	Q2WG49	Clostridium_botulinum_D_phage	2.9e-37	56.2
WP_029092407.1\|496019_496802_-	RNA methyltransferase	NA	NA	NA	NA
WP_029092408.1\|496946_497315_+	hypothetical protein	NA	NA	NA	NA
WP_096699320.1\|497813_498893_-	type 2 isopentenyl-diphosphate Delta-isomerase	NA	NA	NA	NA
WP_120472715.1\|498898_501067_-	DNA topoisomerase III	A0A1X9I6W8	Streptococcus_phage	5.2e-36	31.8
WP_096699322.1\|501288_502866_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_157767249.1\|503102_503648_+	stage II sporulation protein M	NA	NA	NA	NA
WP_069126676.1\|503843_504200_+\|transposase	transposase family protein	NA	NA	NA	NA
WP_157759369.1\|504229_505105_+\|transposase	transposase	A0A1S5SBP9	Streptococcus_phage	3.5e-31	34.8
WP_096699324.1\|505278_505605_+\|transposase	transposase family protein	NA	NA	NA	NA
WP_157759370.1\|505634_506585_+\|transposase	ISL3 family transposase	Q6V7R1	Burkholderia_virus	2.2e-07	25.2
WP_157759407.1\|506756_506873_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_4

718283 : 798924

unidentified_phage(20.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_080712903.1\|718283_718391_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_069125330.1\|730123_731392_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA
WP_069124469.1\|731455_732415_-\|transposase	IS30 family transposase	H7BW61	unidentified_phage	5.7e-11	25.6
WP_069126423.1\|732655_733279_-	recombinase family protein	M9Q1K0	Clostridium_phage	1.0e-16	40.3
WP_010826346.1\|734505_735627_-	class C sortase	NA	NA	NA	NA
WP_069126424.1\|735623_736820_-	class C sortase	NA	NA	NA	NA
WP_069126425.1\|736905_738393_-	SpaH/EbpB family LPXTG-anchored major pilin	NA	NA	NA	NA
WP_069126428.1\|738457_739189_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_069126429.1\|739190_742850_-	VWA domain-containing protein	NA	NA	NA	NA
WP_096879613.1\|743361_744258_-	DUF4767 domain-containing protein	NA	NA	NA	NA
WP_157767251.1\|744471_745074_+	hypothetical protein	NA	NA	NA	NA
WP_069124469.1\|745418_746378_-\|transposase	IS30 family transposase	H7BW61	unidentified_phage	5.7e-11	25.6
WP_029091776.1\|746549_747206_-	hemolysin III family protein	NA	NA	NA	NA
WP_036027416.1\|747232_748411_-	class I SAM-dependent rRNA methyltransferase	W6LLI2	Streptococcus_phage	1.5e-74	41.8
WP_029091774.1\|748514_749561_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_141691027.1\|750071_752354_+	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	NA	NA	NA	NA
WP_069125329.1\|752374_753478_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_069119164.1\|753474_754620_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	A0A0B5JD48	Pandoravirus	2.6e-18	28.0
WP_069125328.1\|754632_756498_+	bifunctional homocysteine S-methyltransferase/methylenetetrahydrofolate reductase	NA	NA	NA	NA
WP_069125327.1\|756641_757784_+	AI-2E family transporter	NA	NA	NA	NA
WP_069119158.1\|757848_759591_-	adenine deaminase	NA	NA	NA	NA
WP_069125324.1\|759707_760013_-	hypothetical protein	NA	NA	NA	NA
WP_069134829.1\|760290_761472_-	MFS transporter	NA	NA	NA	NA
WP_069125322.1\|761730_762201_-	hypothetical protein	NA	NA	NA	NA
WP_080712928.1\|762223_763030_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_029091763.1\|763043_763817_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_069125321.1\|763936_764923_+	YdcF family protein	NA	NA	NA	NA
WP_069119148.1\|765047_766220_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_069125319.1\|766325_768938_-	YfhO family protein	NA	NA	NA	NA
WP_069125318.1\|769100_769727_-	DUF1775 domain-containing protein	NA	NA	NA	NA
WP_069125316.1\|769749_771414_-	copper resistance protein CopC	NA	NA	NA	NA
WP_029091757.1\|771389_771947_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_069125315.1\|772172_773144_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_029091755.1\|773202_773415_-	DUF2187 family protein	NA	NA	NA	NA
WP_029091754.1\|773600_773801_+	cold-shock protein	Q9AZD3	Lactococcus_phage	5.9e-19	66.7
WP_069125313.1\|774250_776221_+	fructose-bisphosphatase class III	NA	NA	NA	NA
WP_029091752.1\|776283_776634_-	DUF3899 domain-containing protein	NA	NA	NA	NA
WP_069119132.1\|776994_778668_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_029091750.1\|779980_781645_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_029091749.1\|781785_782754_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.2e-19	34.0
WP_029091748.1\|782753_783809_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.0e-13	30.3
WP_036027410.1\|783832_784855_-	ABC transporter permease	NA	NA	NA	NA
WP_029091746.1\|784851_785781_-	ABC transporter permease	NA	NA	NA	NA
WP_069126405.1\|786257_787046_+	hypothetical protein	NA	NA	NA	NA
WP_069126403.1\|787092_787764_-	histidine phosphatase family protein	NA	NA	NA	NA
WP_154657739.1\|787855_788482_-	GTP pyrophosphokinase family protein	NA	NA	NA	NA
WP_029091742.1\|788497_788842_-	hypothetical protein	NA	NA	NA	NA
WP_029091741.1\|788991_789444_-	ASCH domain-containing protein	NA	NA	NA	NA
WP_029091740.1\|789578_790907_-	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	5.1e-50	31.6
WP_029091739.1\|791027_791357_-	AzlD domain-containing protein	NA	NA	NA	NA
WP_096699344.1\|791353_792100_-	AzlC family ABC transporter permease	NA	NA	NA	NA
WP_036027401.1\|792189_793116_+	permease	NA	NA	NA	NA
WP_029091736.1\|793131_794001_+	TIGR03943 family protein	NA	NA	NA	NA
WP_069120898.1\|794091_794457_+	DUF1516 family protein	NA	NA	NA	NA
WP_029091734.1\|794708_795599_-	phosphate ABC transporter substrate-binding protein PstS family protein	M4QRU1	Synechococcus_phage	5.0e-09	29.3
WP_029091733.1\|796018_797383_+	L,D-transpeptidase family protein	NA	NA	NA	NA
WP_096699485.1\|797585_798104_+\|transposase	transposase family protein	NA	NA	NA	NA
WP_069132779.1\|798082_798742_+\|transposase	transposase	NA	NA	NA	NA
WP_141690969.1\|798831_798924_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_5

846568 : 903521

Planktothrix_phage(10.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_141690969.1\|846568_846661_-\|transposase	transposase	NA	NA	NA	NA
WP_069132779.1\|846750_847410_-\|transposase	transposase	NA	NA	NA	NA
WP_069132781.1\|847388_847907_-\|transposase	transposase family protein	NA	NA	NA	NA
WP_069126028.1\|848093_848384_-	hypothetical protein	NA	NA	NA	NA
WP_069126026.1\|848495_851324_-	DUF11 domain-containing protein	NA	NA	NA	NA
WP_069120904.1\|851483_852329_-	WxL domain-containing protein	NA	NA	NA	NA
WP_029091686.1\|852361_852694_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_069120850.1\|852762_853542_-	WxL domain-containing protein	NA	NA	NA	NA
WP_036027381.1\|853528_854572_-	DUF916 and DUF3324 domain-containing protein	NA	NA	NA	NA
WP_029091683.1\|854601_855444_-	WxL domain-containing protein	NA	NA	NA	NA
WP_069133577.1\|855996_857352_-	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA
WP_069126023.1\|857537_859349_-	ABC transporter permease	NA	NA	NA	NA
WP_029091882.1\|859358_860117_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.1e-32	38.2
WP_069118408.1\|860299_860896_-	PepSY domain-containing protein	NA	NA	NA	NA
WP_069126019.1\|861057_861684_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_029091880.1\|861760_862546_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	2.9e-13	25.8
WP_069118403.1\|862558_863563_-	iron ABC transporter permease	NA	NA	NA	NA
WP_029091878.1\|863559_864579_-	iron ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	2.2e-21	26.5
WP_069126017.1\|864621_865665_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_069133576.1\|865679_866612_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_069125626.1\|867136_868225_-	DUF871 domain-containing protein	NA	NA	NA	NA
WP_081315955.1\|868298_869354_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_029091872.1\|869583_870750_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_069125624.1\|870765_872160_-	glycoside hydrolase family 1 protein	A0A0B5JD41	Pandoravirus	9.7e-44	27.4
WP_029091870.1\|872407_873169_-	formate/nitrite transporter family protein	NA	NA	NA	NA
WP_069125623.1\|873305_874220_-	aldo/keto reductase	A0A1V0SDE7	Indivirus	9.3e-11	28.0
WP_069125621.1\|874624_875293_+	hypothetical protein	NA	NA	NA	NA
WP_069125620.1\|875409_876663_+	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA
WP_051457288.1\|876813_877503_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_029091865.1\|877895_878291_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_096879615.1\|878280_879153_+	ABC transporter ATP-binding protein	A0A1V0SGN0	Hokovirus	1.7e-06	29.7
WP_029091863.1\|879154_880201_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_029091862.1\|880317_880974_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_069125616.1\|881453_882203_-	pyruvate formate lyase-activating protein	E5DI79	Enterobacter_phage	6.7e-07	38.2
WP_141690154.1\|882263_884528_-	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	2.9e-178	42.7
WP_029091859.1\|884878_886129_-	MFS transporter	NA	NA	NA	NA
WP_029091858.1\|886256_887075_-	purine-nucleoside phosphorylase	Q5YBA4	Grouper_iridovirus	1.1e-58	41.1
WP_051535994.1\|887270_888470_+	ROK family protein	NA	NA	NA	NA
WP_069125615.1\|888761_889691_+	chitinase	NA	NA	NA	NA
WP_069125613.1\|889800_890346_+	AAA family ATPase	NA	NA	NA	NA
WP_029091854.1\|890610_891108_-	cupin domain-containing protein	NA	NA	NA	NA
WP_069125612.1\|891219_891594_+	VOC family protein	NA	NA	NA	NA
WP_081315954.1\|891665_894779_-	MMPL family transporter	NA	NA	NA	NA
WP_069125610.1\|894930_896331_-	PTS transporter subunit EIIC	NA	NA	NA	NA
WP_069125609.1\|896352_896871_-	PTS transporter subunit EIIC	NA	NA	NA	NA
WP_069125607.1\|897604_900280_+	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA
WP_081312151.1\|900969_902124_+\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	1.3e-41	32.5
WP_096699489.1\|902364_902883_+\|transposase	transposase family protein	NA	NA	NA	NA
WP_096699349.1\|902861_903521_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_6

1202463 : 1212254

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069125023.1\|1202463_1204218_+	thiol reductant ABC exporter subunit CydC	W8CYL7	Bacillus_phage	7.0e-23	23.5
WP_069125024.1\|1204689_1205310_-	helix-turn-helix transcriptional regulator	A0A0A7AQV8	Bacillus_phage	6.1e-06	48.1
WP_069119803.1\|1205501_1205936_-	helix-turn-helix transcriptional regulator	A0A0S2MVM8	Bacillus_phage	1.6e-05	42.4
WP_029091306.1\|1206400_1208185_+	DNA polymerase III subunit gamma/tau	A0A1U9WR94	Streptococcus_virus	1.0e-53	36.4
WP_029091305.1\|1208201_1208522_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
WP_029091304.1\|1208613_1209210_+	recombination protein RecR	NA	NA	NA	NA
WP_029091303.1\|1209231_1209474_+	YaaL family protein	NA	NA	NA	NA
WP_029091302.1\|1209707_1210370_+	dTMP kinase	M1PSC7	Streptococcus_phage	1.9e-53	48.3
WP_029091301.1\|1210371_1210701_+	cyclic-di-AMP receptor	NA	NA	NA	NA
WP_069125026.1\|1210763_1212254_+	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	3.2e-77	36.0

DBSCAN-SWA_7

1814666 : 1826626

Synechococcus_phage(44.44%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_029090604.1\|1814666_1815854_+	ammonium transporter	H8ZJB2	Ostreococcus_tauri_virus	4.3e-32	31.3
WP_029090603.1\|1815874_1816231_+	P-II family nitrogen regulator	NA	NA	NA	NA
WP_069119305.1\|1816607_1817096_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	1.7e-19	40.1
WP_069125098.1\|1817088_1818210_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_029090600.1\|1818226_1819528_+	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	7.5e-22	32.8
WP_069125099.1\|1819696_1820419_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3FUQ7	Synechococcus_phage	4.9e-39	39.0
WP_029090598.1\|1820421_1820676_+	phosphoribosylformylglycinamidine synthase subunit PurS	A0A1D8KKU6	Synechococcus_phage	9.4e-06	36.1
WP_069119297.1\|1820672_1821353_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_069125100.1\|1821342_1823562_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	4.4e-155	41.3
WP_029090595.1\|1823546_1824980_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	9.6e-55	35.1
WP_069125102.1\|1824993_1826034_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3F760	Synechococcus_phage	6.1e-59	43.8
WP_069125103.1\|1826038_1826626_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.1e-17	31.9

DBSCAN-SWA_8

2306227 : 2314715

Staphylococcus_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069125142.1\|2306227_2306845_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	3.5e-22	36.6
WP_080712972.1\|2307162_2307435_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	1.1e-20	56.2
WP_069126469.1\|2307537_2308032_+	NUDIX domain-containing protein	NA	NA	NA	NA
WP_069120683.1\|2308361_2309558_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	8.6e-150	70.4
WP_069126471.1\|2309644_2310331_+	uracil-DNA glycosylase	A0A0B5IW78	Pandoravirus	2.1e-47	43.4
WP_029092481.1\|2310427_2312329_+	asparagine synthase (glutamine-hydrolyzing)	A0A1V0SGM7	Hokovirus	6.6e-27	29.3
WP_036042322.1\|2312454_2312844_+	DUF2283 domain-containing protein	NA	NA	NA	NA
WP_029092479.1\|2312925_2313936_-	alcohol dehydrogenase AdhP	A0A2K9L339	Tupanvirus	9.2e-28	26.4
WP_069126472.1\|2314139_2314715_-	class I SAM-dependent methyltransferase	A0A2H4PQV0	Staphylococcus_phage	2.0e-35	43.9

DBSCAN-SWA_9

2463410 : 2473917

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069125542.1\|2463410_2466059_+	DNA mismatch repair protein MutS	A0A2P0VN50	Tetraselmis_virus	1.8e-38	23.5
WP_069125544.1\|2466189_2468046_+	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	5.8e-68	30.5
WP_029090970.1\|2468240_2468930_+	response regulator transcription factor	W8CYM9	Bacillus_phage	5.3e-27	33.8
WP_069125545.1\|2468922_2470101_+	HAMP domain-containing protein	W8CYF6	Bacillus_phage	1.4e-27	34.3
WP_069125546.1\|2470177_2472121_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	1.8e-19	32.9
WP_069125548.1\|2472120_2473917_+	ABC transporter ATP-binding protein/permease	G9BWD6	Planktothrix_phage	5.5e-31	35.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP023643

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection