CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP023641	Pseudomonas mendocina strain MAE1-K chromosome, complete genome	3 crisprs	cas3,DinG,DEDDh,WYL,csa3	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP023641_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023641_1

324177-324316

Orphan

Consensus_repeat	Method
CTTGTGTCAATCTATGTTGTT	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP023641_1

>merge|NZ_CP023641|1|324177-324316|PILER-CR
TGTCAATCTATGTTGTTCCAAGGTCGGTAATTTATTCGATGCGGCCATAGCCTTGTGTCAAACTATGTTACCGAAGTTGGCGACTAAGCCCTTGGTTTTTCTCAGTGTTTTCAAGGGGGCTTGTGTCAATCTATGTTGTT

>NZ_CP023641|1|1|324177-324316|PILER-CR
TGTCAATCTATGTTGTTCCAA	GGTCGGTAATTTATTCGATGCGGCCATAGCCTTG
TGTCAAACTATGTTACCGAAG	TTGGCGACTAAGCCCTTGGTTTTTCTCAGTGTTTTCAAGGGGGCTTGTGT
CAATCTATGTTGTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023641.1\|WP_096825055.1\|318107_321248_+\|CusA/CzcA-family-heavy-metal-efflux-RND-transporter	unknown	unknown	gnl\|CDD\|129992
NZ_CP023641.1\|WP_024306113.1\|325514_325745_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023641.1\|WP_003464914.1\|311965_312229_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023641.1\|WP_021488258.1\|309874_310315_-\|Cd(II)/Pb(II)-responsive-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133411
NZ_CP023641.1\|WP_012017834.1\|313008_314442_-\|heavy-metal-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|273593
NZ_CP023641.1\|WP_096825061.1\|326718_327156_-\|cobalamin-biosynthesis-protein	unknown	unknown	gnl\|CDD\|376648
NZ_CP023641.1\|WP_031306429.1\|310555_311896_+\|OprD-family-porin	unknown	unknown	gnl\|CDD\|335381
NZ_CP023641.1\|WP_096825057.1\|324356_325136_-\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|235576
NZ_CP023641.1\|WP_096825062.1\|327533_328583_+\|cobalamin-biosynthesis-protein-CobW	unknown	unknown	gnl\|CDD\|274151
NZ_CP023641.1\|WP_003464910.1\|314438_315113_-\|heavy-metal-response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|130454
NZ_CP023641.1\|WP_003464900.1\|321642_321873_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023641.1\|WP_096827695.1\|316819_318085_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273386
NZ_CP023641.1\|WP_096825067.1\|334235_335003_+\|precorrin-6A-synthase-(deacetylating)	unknown	unknown	gnl\|CDD\|236218
NZ_CP023641.1\|WP_096825066.1\|333528_334239_+\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|224161
NZ_CP023641.1\|WP_096825054.1\|315511_316762_+\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NZ_CP023641.1\|WP_096825063.1\|328658_332405_+\|cobaltochelatase-subunit-CobN	unknown	unknown	gnl\|CDD\|235663
NZ_CP023641.1\|WP_096825058.1\|325132_325345_-\|ParD-like-family-protein	unknown	unknown	gnl\|CDD\|314732
NZ_CP023641.1\|WP_012017832.1\|308497_309826_+\|OprD-family-porin	unknown	unknown	gnl\|CDD\|335381
NZ_CP023641.1\|WP_096825060.1\|325966_326722_-\|precorrin-4-C(11)-methyltransferase	unknown	unknown	gnl\|CDD\|225430
NZ_CP023641.1\|WP_096825065.1\|332545_333547_+\|AAA-domain-containing-protein	unknown	unknown	gnl\|CDD\|274135

Protein	Function_ID	Function_description	E-value
NZ_CP023641.1\|WP_096825055.1\|318107_321248_+\|CusA/CzcA-family-heavy-metal-efflux-RND-transporter	gnl\|CDD\|129992	TIGR00914, Nickel-cobalt-cadmium_resistance_protein_NccA, heavy metal efflux pump, CzcA family. This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Detoxification, Transport and binding proteins, Cations and iron carrying compounds].	0
NZ_CP023641.1\|WP_096825062.1\|327533_328583_+\|cobalamin-biosynthesis-protein-CobW	gnl\|CDD\|274151	TIGR02475, Probable_cobalamine_biosynthesis_protein, cobalamin biosynthesis protein CobW. The family of proteins identified by this model is generally found proximal to the trimeric cobaltochelatase subunit CobN which is essential for vitamin B12 (cobalamin) biosynthesis. The protein contains an P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. A broader CobW family is delineated by two Pfam models which identify the N- and C-terminal domains (pfam02492 and pfam07683). [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin].	0
NZ_CP023641.1\|WP_021488258.1\|309874_310315_-\|Cd(II)/Pb(II)-responsive-transcriptional-regulator	gnl\|CDD\|133411	cd04784, HTH_CadR-PbrR, Helix-Turn-Helix DNA binding domain of the CadR and PbrR transcription regulators. Helix-turn-helix (HTH) CadR and PbrR transcription regulators including Pseudomonas aeruginosa CadR and Ralstonia metallidurans PbrR that regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which form a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.	1.61035e-57
NZ_CP023641.1\|WP_012017834.1\|313008_314442_-\|heavy-metal-sensor-histidine-kinase	gnl\|CDD\|273593	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (pfam00512) and a domain found in bacterial signal proteins (pfam00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.	2.52284e-130
NZ_CP023641.1\|WP_096825061.1\|326718_327156_-\|cobalamin-biosynthesis-protein	gnl\|CDD\|376648	pfam01890, CbiG_C, Cobalamin synthesis G C-terminus. Members of this family are involved in cobalamin synthesis. The protein encoded by Synechocystis sp.cbiH represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyze adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyzes a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process. Within the cobalamin synthesis pathway CbiG catalyzes the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. This family is the C-terminal region, and the mid- and N-termival parts are conserved independently in other families.	1.42824e-32
NZ_CP023641.1\|WP_031306429.1\|310555_311896_+\|OprD-family-porin	gnl\|CDD\|335381	pfam03573, OprD, outer membrane porin, OprD family. This family includes outer membrane proteins related to OprD. OprD has been described as a serine type peptidase. However the proposed catalytic residues are not conserved suggesting that many of these proteins are not peptidases.	7.96011e-177
NZ_CP023641.1\|WP_096825057.1\|324356_325136_-\|type-I-methionyl-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	9.74805e-132
NZ_CP023641.1\|WP_003464910.1\|314438_315113_-\|heavy-metal-response-regulator-transcription-factor	gnl\|CDD\|130454	TIGR01387, Transcriptional_regulatory_protein_PcoR, heavy metal response regulator. Members of this family contain a response regulator receiver domain (pfam00072) and an associated transcriptional regulatory region (pfam00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system. [Regulatory functions, DNA interactions].	4.29172e-119
NZ_CP023641.1\|WP_096827695.1\|316819_318085_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273386	TIGR00999, Nickel-cobalt-cadmium_resistance_protein_NccB, Membrane Fusion Protein cluster 2 (function with RND porters). [Transport and binding proteins, Other].	3.91047e-66
NZ_CP023641.1\|WP_096825067.1\|334235_335003_+\|precorrin-6A-synthase-(deacetylating)	gnl\|CDD\|236218	PRK08284, PRK08284, precorrin 6A synthase; Provisional.	4.97431e-142
NZ_CP023641.1\|WP_096825066.1\|333528_334239_+\|VWA-domain-containing-protein	gnl\|CDD\|224161	COG1240, ChlD, Mg-chelatase subunit ChlD [Coenzyme metabolism].	9.86861e-44
NZ_CP023641.1\|WP_096825054.1\|315511_316762_+\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	1.64345e-35
NZ_CP023641.1\|WP_096825063.1\|328658_332405_+\|cobaltochelatase-subunit-CobN	gnl\|CDD\|235663	PRK05989, cobN, cobaltochelatase subunit CobN; Reviewed.	0
NZ_CP023641.1\|WP_096825058.1\|325132_325345_-\|ParD-like-family-protein	gnl\|CDD\|314732	pfam11903, ParD_like, ParD-like antitoxin of type II bacterial toxin-antitoxin system. ParD-like antitoxin is a family of archaeal and bacterial proteins of a type II bacterial toxin-antitoxin system. Many of the cognate toxins for these molecules fall into family ParE-like_toxin, pfam15781. Gene-pairs are expressed from the same operon, the toxin of the pair being expressed first, eg, for UniProtKB:Q3AQ93 and UniProtKB:Q3AQ94.	6.75117e-27
NZ_CP023641.1\|WP_012017832.1\|308497_309826_+\|OprD-family-porin	gnl\|CDD\|335381	pfam03573, OprD, outer membrane porin, OprD family. This family includes outer membrane proteins related to OprD. OprD has been described as a serine type peptidase. However the proposed catalytic residues are not conserved suggesting that many of these proteins are not peptidases.	8.63059e-156
NZ_CP023641.1\|WP_096825060.1\|325966_326722_-\|precorrin-4-C(11)-methyltransferase	gnl\|CDD\|225430	COG2875, CobM, Precorrin-4 methylase [Coenzyme metabolism].	2.57332e-132
NZ_CP023641.1\|WP_096825065.1\|332545_333547_+\|AAA-domain-containing-protein	gnl\|CDD\|274135	TIGR02442, Uncharacterized_protein_Rv2850c/MT2916, cobaltochelatase subunit. Cobaltochelatase is responsible for the insertion of cobalt into the corrin ring of coenzyme B12 during its biosynthesis. Two versions have been well described. CbiK/CbiX is a monomeric, anaerobic version which acts early in the biosynthesis (pfam06180). CobNST is a trimeric, ATP-dependent, aerobic version which acts late in the biosynthesis (TIGR02257/TIGR01650/TIGR01651). A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.	3.56081e-124

>NZ_CP023641.1|WP_003464900.1|321642_321873_+|hypothetical-protein
MTMPSERSRSVVQTREFLVELSRNKELPESVRDQARFLLRHFPKKDDVVLAGRIEEQSETLPIGVMGPVFSSVFTG
>NZ_CP023641.1|WP_096825055.1|318107_321248_+|CusA/CzcA-family-heavy-metal-efflux-RND-transporter
MFERIIQFAIEQRFLVLLAVLAMAGVGVASYQKLPIDAVPDITNVQVQISTAAEGFSPLETEQRITFPIETAMAGLPHLKQTRSLSRSGLSQVTVIFEDGTDLYFARQLVNERLQSAKEQLPEGVEASMGPISTGLGEIFLWTVEAEEGALKEDGTPYTPTDLRVIQDWIIKPQLRTVPGVAEINTIGGFAKEFQVAPDPKRLAAYKLTLGDLLLALERNNANVGAGYIERNGEQLLIRAPGQLSTLDDIANIVVANVDGTPIRVSHVAQVMLGRELRSGAATENGREVVLGTVFMLIGENSRSVSQAVAARLEEINRSLPEGVVAVTVYDRTNLVDKAIATVKKNLIEGAILVIVILFLFLGNIRAALITAMVIPLSMLFTFTGMFSNKVSANLMSLGALDFGIIVDGAVVIVENAIRRLAHAQHKLGRELTRSERLHEVFAASKEARRALIFGQLIIMVVYLPIFALTGVEGKMFHPMAFTVVTALFGAMILSVTFVPAAIALFVTGKVKEEENALMRVARRTYEPVLAWVMRRRTLAFSAAVALVLFSGLLASRMGSEFVPSLSEGDFALQALRVPGTSLTQSVEMQMRLEETILAKVPEVERVFARTGTAEIASDPMPPNISDSYVMLKPRDQWPDPKKSRDALIAELQAAAELVPGSNYELSQPIQLRFNELISGVRSDVAVKIFGDDMDVLNSTAAEVAETLGGIDGASEVKAEQTTGLPVLTVAIDRDKAARYGLNVGDIQETVAVAVGGRRAGTLFEGDRRFDLVVRLPENLRTDIEGLSRLLIPVPATGAATSVGFIALSEVASLQLAPGPNQVSRENGKRLVVVSANVRGRDIGSFVQEAEERIRSDVKLPAGYWTTWGGQFEQLQSAAKRLQVVVPVALLLVFMLLFMMFNNVRDGLLVFTGIPFALTGGVMALWLRDIPLSISAGVGFIALSGVAVLNGLVMISFIRNLREEGMGLQQAVTEGALQRLRPVLMTALVASLGFVPMALATGTGAEVQRPLATVVIGGILSSTALTLLVLPALYRWAYRKEEKEEM
>NZ_CP023641.1|WP_096827695.1|316819_318085_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MQKKLGVAVAAALTLGFVGGALFYNGGRYAAEIGHMLASNDSVDAVKAGQVSEAGDDHADDDHGEAGDDHGESAGGHAEEGGLVLSEAQIAAAGIELVDVQARAMSTYISLPGEVNFDEERTAHVVPPSAGVVERVLVGLGQKVAAGDGLATIVSQQVSELRSEMAAAARRVELARTTFERERQLWKDGISAEQDYLQARQTLQEAEIALANARQKGKTISPQGEAGDGSRYNLRAPFSGVVVEKHLVPGEVVSETSNAFTVADLSRVWVTFSVSPRDLEQVKVGQSVRVSAPELGREATGKVAYISRLLGEQTRTATGRIDLDNADGIWRPGLFVSVALATESHEAGAVVPASSIQDVEDKTSVFVRTAEGFEVRPVTLGTRSDGFVEVREGLKSGERVAATGSFILKSELGKGSAEHAH
>NZ_CP023641.1|WP_096825054.1|315511_316762_+|TolC-family-protein
MSRRYSRIAEALCLAVACSFIVSQAVASTPITLGDAWGQVLQTNPSLMAGDRNVGIAEGERRQAGVIPNPELSWEVEDTRSATRTTTVQISQPIELGGKRGARIEMAERGIDSAAIGQEQLRNELRAEVVGAFQGALLAKMRQELAEQSQRLSERGVAVVDARVKAGKASALEASRARLQYEEVRLEAARARDQYINAMNQLLALIGGASASGEPSLSGDVTDMPAIPSEVALLSRLDKVPQMRLARVEIDRQEAGIAVEKSRRIPDLTVSLGSQYSSEDRERVNLVGLSMPLPLFDRNQGNVLAASRRADQARDLRNAAELRLRSEVQQAYQQWRTAQGAISGFEGGLLASADTALENTTRGFQMGKFGFIDVLDAQRTLIDVRSRYLQALGEALDAWVRLERIYGDLSAQADSY
>NZ_CP023641.1|WP_003464910.1|314438_315113_-|heavy-metal-response-regulator-transcription-factor
MRILIVEDELKTAEYLHQGLTESGYVVDIATNGVDGLHMAAQASYELIILDVDLPEIDGWGVLASIRRNSRTPVMMLTARGRLADKLKGFDSGADDYLVKPFEFPELLARVRSLLRRGEQVSAPDVLKVDDLELDPARHRAYRNGQRIDLTTKEFALLHLLMRRSGEVLSRTQIISLVWDMNFDCDTNVVEVSIRRLRAKIDDPFENKLIHTLRGVGYVLEARQ
>NZ_CP023641.1|WP_012017834.1|313008_314442_-|heavy-metal-sensor-histidine-kinase
MRPARLSSQLSLSVAILGLILVALLSALAYFSLSRQLNYIAEQSLEDKLQQIRHGMREINTRPEVGDQAHNIRDLIKGHDSLSLALYDDSSSPKEIMSVGQTQEALPSFIENASETIAFEHWRDAQDKQLLTASQLILRKDGSRIRAVLTLERSADQALLHAYVESTLIALPFVLALIAAGAWWIAHRGLSSLNQFRKVAELVSTQDLSHRLPLDNLPQELRELANSINFMLHRLDGGVQQLSQFSDDLAHELRSPITNLIGKAQVTLSRERPPEEYKLVLENCTEELGRVTRIVSDMLFLAHVSHPAALIPFEAIALHEEAEKVVELFSLTAEEKDIKLNVSGYATINGDRLMVQRAISNLLSNAIRHSPEGSKIDIDLITNATNATLAVSNPGAGIPPEHLPKLFERFYRVDRGRSRADGGTGLGLAIVRSIMSLHHGHVGVSSIADQTTVFTLYFPLPKPLIEQARQSSTEKTA
>NZ_CP023641.1|WP_003464914.1|311965_312229_+|hypothetical-protein
MPIRNMGLSSKHSFPYLLSQSEVHMKVFSQFLFIVFLGAASMVASAEDGSERSLNAVKQFRENQQRIHGDNAVEQQKSQSAQSEQDD
>NZ_CP023641.1|WP_031306429.1|310555_311896_+|OprD-family-porin
MKKSPLTMAIISALAFGASAMAQASESQVAEGFIEGSSLNILNRNMYFNRDFRKGEARVLPSGERSSYTEAWGHGIMANFESGFTQGTVGFGIDAYAGLGLKLDTGDGRYGPGGSVNMFPVDSDDRAEDSYSKVGAAVKARFADTVVKAGDVFPTTPVVHYGDSRLLPQSFKGVTVVNESIEGLTLQGGRLHAMSQPQESTSRGDFATFYAGQVDSPWVGYFGGDYELNDNLGFSLYSSRLKDAWDQYYAGMWWTYPLSEDLSLFGGLNYYNATDEGKKQLGDFSNNIYSGSIGVKYGAHRVALSHQRNNGDDDFDYLRQSDSIFLDNSLQYSDFNSPKERSWMVRYDLDMADFGVPGLSFMARYALGRDADYSNANSIYMRTDGAGNPLTDQKRWERNLEVKYVFLEGSLKDLSVRVRQMTTRATAYESDLDEVRVIVEYPLQVL
>NZ_CP023641.1|WP_021488258.1|309874_310315_-|Cd(II)/Pb(II)-responsive-transcriptional-regulator
MKIGELAKRTGCPVETIRYYEHQGLLPSPSRNNSNYRLYSQLHFERLTFIRNCRVLDMTLEEIGRLLAMHDRPHASCALISTLVKEHIAHVEARIQNLQALHAQLRELLGRCKGGSEKMAYCGIVLQLSSHGSGSSLSTAEKNELK
>NZ_CP023641.1|WP_012017832.1|308497_309826_+|OprD-family-porin
MKRSTLALAITAAALSQAASADFLGDSKATLDMRNLYFNEDVRDRDIPSTQEWGQGFILNYQSGFTEGTVGLGIDAIGLLGVRLDGGGRSGKAGIDRNPGALFPLDSDGSAVSDYSKAGVTAKARLSKTELRLGTLQPKLPVVTFNDGRLLPQLFEGGQIVSNEIEGLTLTAGQLEHAKGRSSTDSRGLSIAGSNNATTGQFVNTFYFAGGDYKVTKDLTAQYYFGNLEDFYKQHFLGLIHNYALGGGNLKTDLRYFYSTSDGKNSSESGRAEGYRSNGYWTVGDSKRGEVDNRTWSALFTYSHSGHELSAGYQQVSGDSAFPYLNAGDGATSYLITDRQIGRGGKFLSAGERTWLAGYAYDFGKLGISGLKASVMYLSGDNVDSAQGERNEWERDLRLDYVLQEGSLKGLGFSLRNASLRGNVGADVDENRLYVTYSLPLL
>NZ_CP023641.1|WP_096825057.1|324356_325136_-|type-I-methionyl-aminopeptidase
MSKTPEQIALMAESGRLLASVFGYLDRLDLLGMSTLQVNDLVDKYIVEELKARPASKGQYGFAYAMNTSRNEVVCHGVPSADDILRDGDLVNFDITLEKNGYIADSSKTYLIGEVSDQARQLARVTYEAMCEGISAVRPGARLGDIGHAIERHARAHGYSVVRDYCGHGIGREMHEPPEVLHWGKAGTGLTLREGMTFTIEPMLNQGKADVRTLRDGWTVVTCDGQLSAQFEHTVAVTREGVRVLTLRPEELHLSSVSA
>NZ_CP023641.1|WP_096825058.1|325132_325345_-|ParD-like-family-protein
MGIVNIDDDLHDQIRRASSVSGRSINAQAGFWIRIGMLCEMNPTLSFNEVMAAELRAAGVAVPPRMADAS
>NZ_CP023641.1|WP_024306113.1|325514_325745_+|hypothetical-protein
MKRADVKRRTAEGVLFDTQIMANPANTAEWIVFFKKEAGRSFFLVDETEQVETFASLDEVIPELRLLGIKRVEVQL
>NZ_CP023641.1|WP_096825060.1|325966_326722_-|precorrin-4-C(11)-methyltransferase
MTVYFIGAGPGDPELITVKGQRLIRACPVILYAGSLVPEAVLQGHSAEQVVNTAELNLGEIVNLLHQAHKRGQDVARVHSGDPSLYGAIGEQIRELRALGVPFEIVPGVTATAACAALLESELTLPGIAQTVILTRYGTTSPMPEGEQLQDLARHRATMAIHLGVRQLPAIVAELLPHYGADCPIAVIHRASWPDQDWVLGTLADIEAKVAAKEFRRTALILVGRVLDPGSFAESALYDARHRHLYRPGND
>NZ_CP023641.1|WP_096825061.1|326718_327156_-|cobalamin-biosynthesis-protein
MLPTASAPPSASPTQVVAGLGCRRGCSRNEMLELLIHSLARYELTVNNLAGLASIVHKRDEAGLHDLAEHLGLELVFFSPEQLAGYQTPTGASALSQATTGSPAVAEPCALALAANMGTAPRRLGEKTRSASATCALAIFDREPE
>NZ_CP023641.1|WP_096825062.1|327533_328583_+|cobalamin-biosynthesis-protein-CobW
MKTLAKLPVTIVTGFLGAGKTTLLRHLLANAGGRRIAVIVNEFGELGIDGEILKQCSIGCSEEEANGRVFELANGCLCCTVQEEFFPVMRELVARRGDLDHILIETSGLALPKPLVQAFNWPEIRNACTVDAVITVVDSPAVLAGTFVAFPDQVDEQRKLDPNLDHESPLHELFADQLASADLVILNKADLLDAEALAAVHAEVAEELPPAVKVIEAHGGELPLDVLLGLNSETELHIDSRRTHHDDEDEDHDHEEFDSFHVELPEAEEARLLAALKAAVSQYGILRVKGFAAIPGKPMRLLVQGVGQRFDRHFDRAWQADEPRVSRLVLIGQQLDRAAIQADLLAALA
>NZ_CP023641.1|WP_096825063.1|328658_332405_+|cobaltochelatase-subunit-CobN
MHLLRTQPGAQLPADSIADLGQTPAELVILCTGDSHLSLLAEAARQLPDDYPSLRLASPAQLSNHASVDYYVDQVLQHAKVILISVHGGVSYWRYGVERLVELGARGATVIMVPGDDKPDPELSALGNVGEEDSQRLWQYLRQGGLDNARQLFRCIGSRWLGRDEAWQEPQALPRVGLYHPQHSPATLADWRAQWQPDAPVVALLFYRNHVQSANTAFVDTFCQHLFGQGLNPLPIAVASLKEPACLGQVQDWLDETNAALIINTTGFALSNPEAPQARVFRRDIPVLQAICSLDNQAQWQGSAQGLGSRDLAMHVVLPELDGRLIGTAISFKGLAWRSERSQSDVVCYQPHEPGMAFVAELARNWCQLALKSNDQKRIGLILANYPTRDGRIGNGVGLDTPGAALNILRALQAQGYPVDNLPDSGTALVHSLLGGVTNDLDGLDTRPCAQSLALDDYLRFFHSLPEQNQQAVRERWGEPQDDPMFRSGRMMVAGLRFGLTFVGIQPARGYQLDAAAVYHDPDLVPPHGYIAFYAWLRKVFAADALIHVGKHGNLEWLPGKSVGLSEGCWPQALIGPLPNIYPFIVNDPGEGAQAKRRTQAVIIDHLMPPLTRAESYGPLRDLERLADEYYDASQLDQRRAVELRGEILAKVREASLDRELGLQLNDDADSWLPQLDAYLCDLKESQIRDGLHVFGESPAGQLRRDTLLALLRIPRGDGQGANASLLRALARGLELGLDPLDCDMGQAWAGPRPQALMAVDNSLWRTVGDTRERLELLALRLIEQRLAGERSEAFGAEVALILDGLAEHIAPLLDACGDAEMGGLLAALEGRFVPAGPSGAPSRGRLDVLPTGRNFFTVDVRHLPTPTAWRLGVQAADRLLERHLQDEGDHLRQLGLSVWGTATMRTGGDDIAQALALMGVRPVWQPGSQRVERFDVLPLEQLGRPRVDVTLRVSGFFRDAFSNLIRLFDEAVQAVIELDEPEDMNPLSARVWRESLALKDGGLDEAEARRQAGWRVFGAKPGAYGAGVQNAIEERLWQSRADLAEVYLNWGGYAYGSGAEGAPARQRFIERLEQMQAVLHNQDNREHDILDSNDYYQFQGGMLAAVETLRGLRVASYFGDNSQPDTPRIRTLKEELNRVVRARAANPKWIAGMKRHGYKGAFELAATIDYLFAFDATSELVDDHQYALLTDAYLLDKDTRDFIQQHNPGALNDILERLLEAQQRGLWENPGEYRAALENLLLDSEES
>NZ_CP023641.1|WP_096825065.1|332545_333547_+|AAA-domain-containing-protein
MIEYHFPLAAVVGADSLKLALCLAAIDPAIGGVLIEGPRGMAKSTLARGLADLLEGGRFVTLPLGASEERIVGTLDLDAALGEGRAQFSPGLLARANGGVLYVDEVNLLPDHLVDLLLDAAASGVNHVERDGISHRHAARFVLIGTMNAEEGELRPQLLDRFGLNLALDGQPQPAERAEIVRRRLAFDADPAAFLQRWQGEQDALAARCQNARQRLVDIPLDDAALGEISQRCFAAGVDGLRADLVWLRAARAHAAWRGAAGIEPVDIEEVEDFVLRHRRRQQQPPAATPPEQSQAPQQAQEQSQGEGQWGELPAQPQAMGERRVPPRWAKKP
>NZ_CP023641.1|WP_096825066.1|333528_334239_+|VWA-domain-containing-protein
MGKKALSIRPRTATGADARNRPGRLGGGLHGAARSGAGGRIDWVATLRQGRPQRREQLVLRPRSQQAEELWLVLVDASASTRRHGALSRAKGVLAEVFDSAYRQRARLAVLQAGGREAQWLWQGRKASAELHRWLQELGAGGGTPLFDALQQAGGWLLRRQRAKPHERQRLLILTDGRLRDLPALAPLPCPTLLLDTERAPIRLGRARQLAQALQADYHHIDDLALGVPGRTWRTP
>NZ_CP023641.1|WP_096825067.1|334235_335003_+|precorrin-6A-synthase-(deacetylating)
MKTLLLVGIGAGDPDYITYQAIKALRRSDVIFLMDKGAAKHKLNALRREICARFLDGHAPRFAEGLQPERERDAADYRASVDELNRDKQAVFEQLIDEQMADGETAAFMVWGDPSLYDSSIRIIEAIAARRSDFVYDVIPGITSLQALTARHRIPLNSIGRAVEITTGRLLAEGWPQGVDSVAVMLDAKDTYHRFVGQGLHIYWGAYVGTADEILIAGPLDEVAERIAMTRAEARERNGWIMDSYLLRREHEAEA

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Crispr_ID: NZ_CP023641_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023641_2

835466-835617

Orphan

Consensus_repeat	Method
TTCAACGACCAGAGCACGGCCGGTAA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP023641_2

>merge|NZ_CP023641|2|835466-835617|CRISPRCasFinder
TTCAACGACCAGAGCACGGCCGGTAACGCCACTATCAACAACAGCTTCAGTGGCCTGACCTTCTTCAACGATCAGAGCACGGCCGGTAATGCGACGATACGCAGCGAGAACGGTGGCGCGACGATCTTCACCGGGCAGAGCAGCGCCGGCAA

>NZ_CP023641|2|1|835466-835617|CRISPRCasFinder
TTCAACGACCAGAGCACGGCCGGTAA	CGCCACTATCAACAACAGCTTCAGTGGCCTGACCTTC
TTCAACGATCAGAGCACGGCCGGTAA	TGCGACGATACGCAGCGAGAACGGTGGCGCGACGATC
TTCACCGGGCAGAGCAGCGCCGGCAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023641.1\|WP_004373709.1\|850188_851079_-\|acyltransferase	unknown	unknown	gnl\|CDD\|237584
NZ_CP023641.1\|WP_012019961.1\|828733_830188_+\|tRNA-4-thiouridine(8)-synthase-ThiI	unknown	unknown	gnl\|CDD\|234932
NZ_CP023641.1\|WP_012019963.1\|825533_826154_-\|DUF4124-domain-containing-protein	unknown	unknown	gnl\|CDD\|379230
NZ_CP023641.1\|WP_096825405.1\|843945_846963_+\|sarcosine-oxidase-subunit-alpha	unknown	unknown	gnl\|CDD\|273584
NZ_CP023641.1\|WP_004373722.1\|842180_843431_+\|sarcosine-oxidase-subunit-beta-family-protein	unknown	unknown	gnl\|CDD\|273585
NZ_CP023641.1\|WP_004373726.1\|839890_840190_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023641.1\|WP_004373724.1\|840860_842114_+\|serine-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234571
NZ_CP023641.1\|WP_004373715.1\|846955_847585_+\|sarcosine-oxidase-subunit-gamma-family-protein	unknown	unknown	gnl\|CDD\|282168
NZ_CP023641.1\|WP_004373739.1\|832359_833652_-\|glycine-betaine-demethylase-subunit-GbcA	unknown	unknown	gnl\|CDD\|226985
NZ_CP023641.1\|WP_004373730.1\|838614_839655_-\|low-specificity-L-threonine-aldolase	unknown	unknown	gnl\|CDD\|224919
NZ_CP023641.1\|WP_096825403.1\|826156_826723_-\|DUF4124-domain-containing-protein	unknown	unknown	gnl\|CDD\|379230
NZ_CP023641.1\|WP_004373743.1\|830338_832159_+\|translational-GTPase-TypA	unknown	unknown	gnl\|CDD\|224138
NZ_CP023641.1\|WP_004373713.1\|847724_848588_+\|formyltetrahydrofolate-deformylase	unknown	unknown	gnl\|CDD\|237266
NZ_CP023641.1\|WP_004373746.1\|826996_828403_-\|glutamate--ammonia-ligase	unknown	unknown	gnl\|CDD\|181884
NZ_CP023641.1\|WP_004373736.1\|833988_835092_+\|glycine-betaine-demethylase-subunit-GbcB	unknown	unknown	gnl\|CDD\|99811
NZ_CP023641.1\|WP_004373751.1\|824181_825270_-\|nitrogen-regulation-protein-NR(II)	unknown	unknown	gnl\|CDD\|226370
NZ_CP023641.1\|WP_004373752.1\|822751_824185_-\|nitrogen-regulation-protein-NR(I)	unknown	unknown	gnl\|CDD\|273818
NZ_CP023641.1\|WP_012019958.1\|843622_843949_+\|sarcosine-oxidase-subunit-delta	unknown	unknown	gnl\|CDD\|226761
NZ_CP023641.1\|WP_012019956.1\|848859_850059_+\|formaldehyde-dehydrogenase,-glutathione-independent	unknown	unknown	gnl\|CDD\|274314
NZ_CP023641.1\|WP_157761653.1\|828546_828735_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP023641.1\|WP_004373709.1\|850188_851079_-\|acyltransferase	gnl\|CDD\|237584	PRK14014, PRK14014, putative acyltransferase; Provisional.	3.47813e-175
NZ_CP023641.1\|WP_012019961.1\|828733_830188_+\|tRNA-4-thiouridine(8)-synthase-ThiI	gnl\|CDD\|234932	PRK01269, PRK01269, tRNA s(4)U8 sulfurtransferase; Provisional.	0
NZ_CP023641.1\|WP_012019963.1\|825533_826154_-\|DUF4124-domain-containing-protein	gnl\|CDD\|379230	pfam13511, DUF4124, Domain of unknown function (DUF4124). This presumed domain is found in a variety of bacterial proteins. It is found associated at the N-terminus associated with other domains such as the SLT domain and glutaredoxin domains in some proteins. The function of this domain is unknown, but it may have an Ig-like fold.	1.82483e-07
NZ_CP023641.1\|WP_096825405.1\|843945_846963_+\|sarcosine-oxidase-subunit-alpha	gnl\|CDD\|273584	TIGR01372, sarcosine_oxidase_alpha_subunit, sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms [Energy metabolism, Amino acids and amines].	0
NZ_CP023641.1\|WP_004373722.1\|842180_843431_+\|sarcosine-oxidase-subunit-beta-family-protein	gnl\|CDD\|273585	TIGR01373, Sarcosine_oxidase_subunit_beta, sarcosine oxidase, beta subunit family, heterotetrameric form. This model describes the beta subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms. [Energy metabolism, Amino acids and amines].	0
NZ_CP023641.1\|WP_004373724.1\|840860_842114_+\|serine-hydroxymethyltransferase	gnl\|CDD\|234571	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed.	0
NZ_CP023641.1\|WP_004373715.1\|846955_847585_+\|sarcosine-oxidase-subunit-gamma-family-protein	gnl\|CDD\|282168	pfam04268, SoxG, Sarcosine oxidase, gamma subunit family. Sarcosine oxidase is a hetero-tetrameric enzyme that contains both covalently bound FMN and non-covalently bound FAD and NAD(+). This enzyme catalyzes the oxidative demethylation of sarcosine to yield glycine, H2O2, and 5,10-CH2-tetrahydrofolate (H4folate) in a reaction requiring H4folate and O2.	8.28289e-59
NZ_CP023641.1\|WP_004373739.1\|832359_833652_-\|glycine-betaine-demethylase-subunit-GbcA	gnl\|CDD\|226985	COG4638, HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only].	3.86483e-98
NZ_CP023641.1\|WP_004373730.1\|838614_839655_-\|low-specificity-L-threonine-aldolase	gnl\|CDD\|224919	COG2008, GLY1, Threonine aldolase [Amino acid transport and metabolism].	5.04423e-153
NZ_CP023641.1\|WP_096825403.1\|826156_826723_-\|DUF4124-domain-containing-protein	gnl\|CDD\|379230	pfam13511, DUF4124, Domain of unknown function (DUF4124). This presumed domain is found in a variety of bacterial proteins. It is found associated at the N-terminus associated with other domains such as the SLT domain and glutaredoxin domains in some proteins. The function of this domain is unknown, but it may have an Ig-like fold.	2.0756e-10
NZ_CP023641.1\|WP_004373743.1\|830338_832159_+\|translational-GTPase-TypA	gnl\|CDD\|224138	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms].	0
NZ_CP023641.1\|WP_004373713.1\|847724_848588_+\|formyltetrahydrofolate-deformylase	gnl\|CDD\|237266	PRK13011, PRK13011, formyltetrahydrofolate deformylase; Reviewed.	0
NZ_CP023641.1\|WP_004373746.1\|826996_828403_-\|glutamate--ammonia-ligase	gnl\|CDD\|181884	PRK09469, glnA, glutamate--ammonia ligase.	0
NZ_CP023641.1\|WP_004373736.1\|833988_835092_+\|glycine-betaine-demethylase-subunit-GbcB	gnl\|CDD\|99811	cd06215, FNR_iron_sulfur_binding_1, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins which act as electron carriers in photosynthesis and ferredoxins which participate in redox chains from bacteria to mammals. Ferredoxin reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.	4.41203e-140
NZ_CP023641.1\|WP_004373751.1\|824181_825270_-\|nitrogen-regulation-protein-NR(II)	gnl\|CDD\|226370	COG3852, NtrB, Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms].	1.18947e-163
NZ_CP023641.1\|WP_004373752.1\|822751_824185_-\|nitrogen-regulation-protein-NR(I)	gnl\|CDD\|273818	TIGR01818, Nitrogen_assimilation_regulatory_protein, nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems].	0
NZ_CP023641.1\|WP_012019956.1\|848859_850059_+\|formaldehyde-dehydrogenase,-glutathione-independent	gnl\|CDD\|274314	TIGR02819, formaldehyde_dehydrogenase_glutathione-independent, formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. [Central intermediary metabolism, One-carbon metabolism].	0
NZ_CP023641.1\|WP_012019958.1\|843622_843949_+\|sarcosine-oxidase-subunit-delta	gnl\|CDD\|226761	COG4311, SoxD, Sarcosine oxidase delta subunit [Amino acid transport and metabolism].	1.45317e-48

>NZ_CP023641.1|WP_004373736.1|833988_835092_+|glycine-betaine-demethylase-subunit-GbcB
MTTNAFLNPVTTQTWTNGRHLVRCVKVIQETWDVRTFCFMADQPVLFFFKPGQFVTLELEIDGQPIMRSYTISSSPSVPYSFSITIKRVPGGKVSNWLHDNLKEGDELPVHGPVGLFNAIDFPADKVLFLSGGVGITPVMSMARWFFDTNANVDMVFVHSARSPKDIIYHRELEHMASRITNFSLHLICEKHGLGEAWAGYRGYLNQRMLELIAPDFMEREIFCCGPTPYMSAIKHLLQGNGYDMSRYHEEAFGPTPPEIRAEVKELAAEAAEAPEVPVADLHQVEFISTGKSIRVAPGETVHAAAAKLGLHIPKACGMGICGTCKVMKTAGEVDMEHNGGITDEDVAEGYILSCCSVPKGDVAIDY
>NZ_CP023641.1|WP_004373739.1|832359_833652_-|glycine-betaine-demethylase-subunit-GbcA
MDCTHTLSLGDPLEPARKATARMLHERERTFSLPQPFYNDERLFQIDMQEIFHKEWLIAGMTCEIPTKGNFITLQLGDNPILVVRGAEGQIHAFHNVCRHRGSRLCVSDKGKVAKLVCPYHQWTYELDGRLLFAGTEMGADFKLSDYNLKPVHCKSAGGFIFISLAENPPAIDEFLAGLAHYMEPYDMENTKVAVQSVMPEKANWKLVIENNRECYHCNGSHPELLNTLLEWDDTNDPRATQEFKDHVAECAAAWDAEKIPYVHAGFGLRNRIVRMPLLKGTVSMTMDGKPGCKKLMGRIQNPDLGSMRILHLPHSWNHCMGDHLINFTVWPISAQETVVITKWLVHKDAVEGVDYDVERLRQVWDATNDQDRRLGEENQRGINSTAYQPGPYSKTYEFGVVNFLDWYSERMLNNLGDTPAQSLRQASGE
>NZ_CP023641.1|WP_004373743.1|830338_832159_+|translational-GTPase-TypA
MIEKLRNIAIIAHVDHGKTTLVDKLLRLSGTLDRKEAENERVMDSNDQEKERGITILAKNTALKWNDYNINIVDTPGHADFGGEVERVMSMVDSVLLVVDAQDGPMPQTRFVTQKAFKAGLRPIVVVNKIDRPGARPDWVIDQIFDLFDNLGATDEQLDFPIVYASALNGIAGMDHEKMDDNMDALFQAIVDHVPAPVVDVNGPFQMQISQLDYNSFLGVIGIGRIARGTIKANSPVTAIGADGKKRNGRILKIMGHSGLQRVEVQEAQAGDIVCVSGMDELYISDTLCDQNNVEALPPLTVDQPTVSMTFQVNDSPFAGKEGKFVTSRNIKDRLEKELLHNVALRVEPGETPEKFKVSGRGELHLSVLIETMRREGFELAVGRPEVVIIENEAGEKQEPYENVTIDIEEQHQGSVMEQMGLRKGDLTNMVPDGKGRIRLEYTIPARGLIGFRNNFLTLTSGSGILTSTFSHYGAIKAGEVTNRQNGVLVSMATGTALTYSLETLQARGKLFLEPGQDIYEGQLCGINSRDNDLVINPTKGKKLDNMRASGKDEVIALVPPIKFTLEQALEFIADDELVEVTPKSIRLRKKYLNENDRKRFERAKV
>NZ_CP023641.1|WP_012019961.1|828733_830188_+|tRNA-4-thiouridine(8)-synthase-ThiI
MKLIVKVFPEITIKSRPVRKQFIRQLGKNIRAVLRDLDPELRVTGVWDNLEVETDLDDPKLLAEMTERLRNTPGIGLFLEVNEYPLGDLDAITEHCKRHYADQLPGKIFAVRCKRGGKHPFSSIDVERHVGSRLRQECNAAGIDLKKPEVEVRMEIRDQRLFVVHNRHEGLGGYPLGSLEQTLVLMSGGFDSTVAAYQMMRRGLVSHFCFFNLGGRAHELGVMEVAHYIWQKFGRSQRVLFISVPFEEVVGEILGKVDNSQMGVILKRMMLRAATRVAERLEIEALVTGEAISQVSSQTLTNLAVIDSATDMLVMRPLIASHKQDIIDTATQIGTAEFAKNMPEYCGVISVNPTTKARGYRIEREEAQFDMAILERALERATQLPIDRVIDELGKDVQVEEVREALAGQIVIDIRHPDAAEDEPLDVPGVEVQTLPFYALNNKFKELDENRQYLLYCDKGVMSRLHAHHLLSEGHANVRVYRPA
>NZ_CP023641.1|WP_157761653.1|828546_828735_-|hypothetical-protein
MNKAPARGDEKTGARIIAEIAQALTKNTAASRARTKIGLSNILQPLNGANIRADLPRRRRSA
>NZ_CP023641.1|WP_004373746.1|826996_828403_-|glutamate--ammonia-ligase
MSKAVQLIKEHDVKWVDLRFTDTKGKQHHVTMPARDALDEDFFEHGKMFDGSSIHGWKGIEASDMILMPVDDTAVLDPFTEEPTLILVCDIIEPSTMQGYDRDPRSIAKRAEEFLKTTGIGDTVFVGPEPEFFIFDEVKFKSDISGSMFKIYSEQGSWMTDGDVEGGNKGHRPAVKGGYFPVPPCDHDHEIRTAMCNAMEEMGLVVEVHHHEVATAGQNEIGVKFNTLVAKADEVQTLKYCVHNVADAYGKTATFMPKPLYGDNGSGMHVHMSISKDGKNTFAGEGYAGLSETALYFIGGIIKHGKALNGFTNPSTNSYKRLVPGFEAPVMLAYSARNRSASIRIPYVASPKARRIEARFPDPAANPYLAFAALLMAGIDGIQNKIHPGDAADKNLYDLPPEEGKLIPQVCGSLKEALEELDKGRAFLTKGGVFSDDFIDAYIELKSEEEIKVRTFVHPLEYDLYYSV
>NZ_CP023641.1|WP_096825403.1|826156_826723_-|DUF4124-domain-containing-protein
MRPLLACLLLALALPASAQIYKYTDANGNTVYTNQPPDGTAAESVDLPPTNTVEMQVPKAPAESTGASSPQSEAPYSVLRLTGIPDDEAMRANNGTFIVSVNIEPRLQPGHRLRLILDGEPYGQASNVPSLQLTNVDRGEHSLAVAVVAGERIIQQSATETFTVQRISLNSPARQTPPPPRPTPKPAN
>NZ_CP023641.1|WP_012019963.1|825533_826154_-|DUF4124-domain-containing-protein
MRLPLVLLLLIAPAALAQVYTYIDAEGNRVFTDKPRSGNAERVILPPSNSVQLNQATPTVKLAPTQQPVTKATVHYQLLRVLLPEPDASIHNGSGDMIVTLTSEPALLPGHSYRLLLDGEVQGEASRSPVFSLRHVDRGTHQLVAEIIDAAGLIVERTPAQPFHMHRMTLAQKRKVNPCKKDDYGVRPECPLKDKPKEEVSILPFF
>NZ_CP023641.1|WP_004373751.1|824181_825270_-|nitrogen-regulation-protein-NR(II)
MTINDALHRLLLDNLTTATLLLDSQLCLEYMNPAAEMLLAVSGQRSHGQFISDLFTESPEALSSLRQAVEQAHPFNKREAVLTSVTGQTLTVDYAVTPLFSKGETLLLLEVHPRDRLLRITKEEAQLSKQETTKLLVRGLAHEIKNPLGGIRGAAQLLSRELPNEELKDYTNVIIEEADRLRNLVDRMLGSNKLPSLAMTNVHEVLERVANLIEAESQGGITLVRDYDPSIPDLLIDREQMIQAVLNIVRNAMQAIAGQKHDMGLGRISLRTRTLRQFTIGHTRHRLVVKVEIIDNGPGIPPELQETIFYPMVSGRADGTGLGLAITQNIISQHQGLIECESHPGHTVFSIFLPLEQGATTP
>NZ_CP023641.1|WP_004373752.1|822751_824185_-|nitrogen-regulation-protein-NR(I)
MSRSETVWIVDDDRSIRWVLEKALQQEGMTTQSFDSADGVLARLTRQQPDVIISDIRMPGASGLDLLARIRELYPRLPVIIMTAHSDLDSAVASYQGGAFEYLPKPFDVDEAVSLVKRAFQHAQEQQSLAAPAAQARTPEIIGEAPAMQEVFRAIGRLSHSNITVLINGESGTGKELVAHALHRHSPRAAAPFIALNMAAIPKDLMESELFGHEKGAFTGAANQRRGRFEQADGGTLFLDEIGDMPADTQTRLLRVLADGEFYRVGGHTPVKVDVRIIAATHQNLETLVQAGKFREDLFHRLNVIRIHIPRLADRREDIPTLANHFLARAAQELAVEPKLLKSETEDYLKHLPWPGNVRQLENTCRWITVMASGREVHVDDLPPELLTQPQDAAPVTNWEQALRLWADQALARGQSNLLDTAVPAFERIMIETALKHTAGRRRDAALLLGWGRNTLTRKIKELGMKVDGADDDDSDD
>NZ_CP023641.1|WP_004373730.1|838614_839655_-|low-specificity-L-threonine-aldolase
MPDNAQQFASDNYSGICPEAWAAMAEANQGHQRAYGDDEWTARAADHFRRLFETDCEVFFAFNGTAANSLALASLCQSYHSVICSETAHVETDECGAPEFFSNGSKLLLARTENGKLTPQAIREIALKRQDIHYPKPRVVTLTQTTEVGTVYRPEEVRAISQTCKELNLNLHMDGARFSNACAFLGCSPADLTWKAGVDVLCFGGTKNGMAVGEAIIFFNKALAEDFDYRCKQAGQLASKMRYLSAPWVGILQDDAWLKYANHANRCAQLLAELVADVPGVSLMFPVEANGVFLQLSEPAIAALTARGWRFYTFIGAGGARFMCSWDTDEARVRQLAADIREVMSA
>NZ_CP023641.1|WP_004373726.1|839890_840190_+|hypothetical-protein
MTYRHLLAVALPLAVALPVSAAEWSAQAKNEFVQQCVAGAPAGYEEPQLRAYCDCAATKVSQEFTEAELQEMSRQSPPDPAMQQRMMNASSSCGDKLKP
>NZ_CP023641.1|WP_004373724.1|840860_842114_+|serine-hydroxymethyltransferase
MFSKQDQIQGYDDELLAAIDQEERRQEEHIELIASENYCSQRVMEAQGSGLTNKYAEGYPGKRYYGGCEYVDKVEQLAIDRAKQLFGADFANVQPHSGSSANSAVYLALLNAGDTILGMSLAHGGHLTHGAKVSSSGKLYNAVQYGLNPATGLIDYDEVERLAVEHKPKMIVAGFSAYSKTLDFPRFRAIADKVGALLFVDMAHVAGLVAAGLYPNPIPFADVVTTTTHKTLRGPRGGLILAKANEEIEKKLNSAVFPGAQGGPLMHVIAAKAVCFKEAMEPEFKAYQQQVIDNAQAMAKVFIERGYEVVSGGTDNHLFLLSLIKQGLTGKEADAALGRAGITVNKNAVPNDPQSPFVTSGIRIGTPAVTTRGFKVAQCQALAGWICDILDHLGDADVEAQVAKLVAGLCADYPVYR
>NZ_CP023641.1|WP_004373722.1|842180_843431_+|sarcosine-oxidase-subunit-beta-family-protein
MQRYSGFGLFKHSFSHHENWQRMWRNPTPKPVYDVIIVGGGGHGLATAYYLAKEFGVKNVAVVEKGWLGGGNTARNTTIVRSNYLWDESAHLYEHAMKLWEGLSQDLNYNVMFSQRGVFNLGHTLQDMRDIERRVSANRLNGIDGEVVDAKQVAEMIPYLDCSKNTRYPILGASLQRRGGVARHDAVAWGFARAADALGVDLIQQTEVIGFRKENGAVIGVETSKGFIGAKRVGVVAAGNSGHLAKLAGFRLPLESHPLQALVSEPIKPIIDTVIMSNAVHGYISQSDKGDLVIGAGIDGYNGYGQRGSYPTIEHTLQAIVEMFPVLSRVRMNRQWGGIVDTTPDACPIIAKTPVKNLYFNCGWGTGGFKATPGSGHVFAASLAKGEMHPLAKAFSIERFHNGALIDEHGAAGVAH
>NZ_CP023641.1|WP_012019958.1|843622_843949_+|sarcosine-oxidase-subunit-delta
MLHIFCPHCGELRSEEEFHVGGQAHIARPLDPNACTDEEWGEYLFFRDNPRGIHHELWIHAAGCRQYFNVTRHTVSYEILETYKIGERPSVTEASLAAKKTVDQGVTA
>NZ_CP023641.1|WP_096825405.1|843945_846963_+|sarcosine-oxidase-subunit-alpha
MSQVNRLAQGGRIDRSQPLTFSFNGQTYQGYAGDTLAAALLANGVDVIGRSFKYSRPRGIVAAGAEEPNAVLQIGSTEAAQIPNVRATQQALYANLTATSTNGWPSVNTDLMGILGKVGGGMMPPGFYYKTFMYPQNLWLTYEKYIRKAAGLGRSPKENDPDIYDYMNQHCDVLVVGAGPAGLAAALAAGRSGARVILADEQEEFGGSLLSTREMLDDKPAADWAAKAIAELQKMPEVTLLPRATVNGYHDHNFLTIHQRLTDHLGEVAPMGQPRQRMHRVRAGRVVLATGAHERPLVYANNDVPGNMLADAVSTYVRRYGVAPGQKLVLSTNNDYAYRVVLDWLDAGRQVVAVADARSNPRGSWVEEARRRGVRVLTGSAVVEARGSKRVTGARICAIDLVTHKVTSPGEVLDCDLIVSSGGYSPVVHLASHLGGRPIWREDILAFVPGEGFQKRHCAGAVNGVFGLGDALADGFEAGAKAAAEVGFKAVTGSLPKAEKRIEEASVALFQVPHDKGTARAPKQFVDQQNDVTAAGIELATREGFESVEHVKRYTALGFGTDQGKLGNINGLAIAAKSLGISISEMGTTMFRPNYTPVTFGAIAGRHCGELFEPKRYTALQKWHLENGAEFEDVGQWKRPWYFPKNGEDLHAAVARECLAVRNAVGILDASTLGKIDIQGPDAREFLNRVYTNAWTKLDVGKARYGLMCKEDGMVFDDGVTACLADNHFVMTTTTGGAGRVMEWLEIYHQTEWPELKVYFTSVTDHWATMTLSGPNSRKLLAEVTDIDLDKDAFPFMSWKEGKVGGVPARVFRISFTGELSYEINVQADYALGVWEQIIEAGKKHGLTPYGTETMHVLRAEKGFIIVGQDTDGSVTPDDLGMGWCVGRTKPFSWIGWRGMNREDCLKENRKQLIGLKPLDPNKVLPEGAQLVFDPKQPIPMTMVGHVTSSYMSAAMGYSFAMALVRGGLSRIGERVFAPLADGSVIEAEIVSPVFYDPKGDRQNV
>NZ_CP023641.1|WP_004373715.1|846955_847585_+|sarcosine-oxidase-subunit-gamma-family-protein
MSNVNVYKQRPDDIAGQSPLHHAGLHELAGKGRKGAGVTLREKKLLGHLVLRGDADDADFAGGVHKALGLELPVALTLVANGDTSLQWLGPDEWLLIVPGGSEFEVERKLREALAGQHISVVNVSGGQTLLELSGPKVRELLMKSTSYDVHPSNFPVGKAVGTVFAKSQLVIRHTGEETWELLVRRSFSDYFWLWLQDASAEYGLAVEA
>NZ_CP023641.1|WP_004373713.1|847724_848588_+|formyltetrahydrofolate-deformylase
MSRTPDTWILTAHCPSVLGTVDAVTRFLFEQRCYVTEHHSFDDRLSSRFFIRVEFRQPEGFDEAAFRAGVAERLAPFAMQVELTPPGYRAKVVLMVSKADHCLNDLLYRQRIGQLAMDVVAVVSNHPDLEPLARWHGIPYHHFPLDPADKPAQERKVLQVIEETGAELVVLARYMQVLSPELCRRLDGWAINIHHSLLPGFKGAKPYHQAYQKGVKLVGATAHYVNDHLDEGPIIAQGVEAVDHAHYPEDLIAKGRDIECLTLARAVGYHIDRRVFLNANRTVVLNA
>NZ_CP023641.1|WP_012019956.1|848859_850059_+|formaldehyde-dehydrogenase,-glutathione-independent
MSDNRGVVYLGAGKVEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTAQVGLVLGHEITGEVIEKGRDVERLQIGDLVSVPFNVACGRCRSCKEQHTGVCLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPYADFNLLKLPDRDKAMEKIRDLTCLSDILPTGYHGAVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAIDCVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYVTEDPGAVDAAAKIGSLSIRFGLGWAKSHSFHTGQTPVMKYNRALMQAIMWDRLNIAEIVGVQVISLDDAPRGYGEFDAGVPKKFVIDPHKMFSAA
>NZ_CP023641.1|WP_004373709.1|850188_851079_-|acyltransferase
MRPLLTGLFNIALLLTNTLLLIGPLLLIALAKFVLPGQGARDACSRGVMWVAEFWAENCKRIFALTTPTHWDIRGNAELRSDRSYLVISNHQSWVDIPALVQAFNRKTPYFKFFLKQQLIWVPFLGLAFWALDYPFMKRYSKAFLAKNPHMQGKDLQITKAACEKFKRLPVTVVNYLEGTRFTPVKQAQQGSPYQYLLKPKAGGVAFVLAALGEQIDAVLDVTLVYPGKQVPGFWALLSGQVPRVIVDIQTRELDPALWQGDYEQDGEFRQYLQGWVTQLWQDKDARIAQLRAEAD

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Crispr_ID: NZ_CP023641_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023641_3

3935262-3935351

Orphan

Consensus_repeat	Method
CCGTAGGGTGCGCCATGCGCACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP023641_3

>merge|NZ_CP023641|3|3935262-3935351|CRISPRCasFinder
CCGTAGGGTGCGCCATGCGCACCAAAACCGAGGGCATCAACCGGACCATTGGGATACGGCCGCGATCCCGTAGGGTGCGCCGTGCGCACC

>NZ_CP023641|3|2|3935262-3935351|CRISPRCasFinder
CCGTAGGGTGCGCCATGCGCACC	AAAACCGAGGGCATCAACCGGACCATTGGGATACGGCCGCGATC
CCGTAGGGTGCGCCGTGCGCACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023641.1\|WP_096827022.1\|3945210_3947469_+\|glucosylglycerol-phosphate-synthase	unknown	unknown	gnl\|CDD\|131451
NZ_CP023641.1\|WP_003241912.1\|3934687_3935248_+\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|238612
NZ_CP023641.1\|WP_096827014.1\|3938547_3939744_+\|aspartate/tyrosine/aromatic-aminotransferase	unknown	unknown	gnl\|CDD\|181731
NZ_CP023641.1\|WP_096827011.1\|3931268_3932048_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_CP023641.1\|WP_012019226.1\|3928223_3928769_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|374318
NZ_CP023641.1\|WP_096827015.1\|3939915_3940830_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270334
NZ_CP023641.1\|WP_003241910.1\|3935483_3937037_-\|sigma-54-dependent-phenylalanine-hydroxylase-transcriptional-regulator-PhhR	unknown	unknown	gnl\|CDD\|225821
NZ_CP023641.1\|WP_004374099.1\|3930542_3931220_+\|DUF4197-domain-containing-protein	unknown	unknown	gnl\|CDD\|379394
NZ_CP023641.1\|WP_096827010.1\|3926308_3928087_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|185635
NZ_CP023641.1\|WP_004374086.1\|3932349_3934311_-\|acetate--CoA-ligase	unknown	unknown	gnl\|CDD\|234677
NZ_CP023641.1\|WP_036987436.1\|3928777_3929311_+\|DUF3833-domain-containing-protein	unknown	unknown	gnl\|CDD\|378992
NZ_CP023641.1\|WP_096827020.1\|3943857_3945120_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341030
NZ_CP023641.1\|WP_004374102.1\|3930025_3930427_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023641.1\|WP_012019228.1\|3929307_3930018_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|181609
NZ_CP023641.1\|WP_096827008.1\|3925099_3925963_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293825
NZ_CP023641.1\|WP_096827012.1\|3937290_3938076_+\|phenylalanine-4-monooxygenase	unknown	unknown	gnl\|CDD\|237020
NZ_CP023641.1\|WP_003241907.1\|3938197_3938551_+\|4a-hydroxytetrahydrobiopterin-dehydratase	unknown	unknown	gnl\|CDD\|234845
NZ_CP023641.1\|WP_096827018.1\|3941996_3942935_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224050
NZ_CP023641.1\|WP_096827019.1\|3942934_3943663_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224095
NZ_CP023641.1\|WP_096827016.1\|3940839_3942000_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224095

Protein	Function_ID	Function_description	E-value
NZ_CP023641.1\|WP_096827022.1\|3945210_3947469_+\|glucosylglycerol-phosphate-synthase	gnl\|CDD\|131451	TIGR02398, Glucosylglycerol-phosphate_synthase, glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.	0
NZ_CP023641.1\|WP_003241912.1\|3934687_3935248_+\|nucleoside-deaminase	gnl\|CDD\|238612	cd01285, nucleoside_deaminase, Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protein synthesis. Other members of the family are guanine deaminases which deaminate guanine to xanthine as part of the utilization of guanine as a nitrogen source.	2.66385e-27
NZ_CP023641.1\|WP_096827014.1\|3938547_3939744_+\|aspartate/tyrosine/aromatic-aminotransferase	gnl\|CDD\|181731	PRK09257, PRK09257, aromatic amino acid transaminase.	0
NZ_CP023641.1\|WP_096827011.1\|3931268_3932048_-\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	2.85867e-60
NZ_CP023641.1\|WP_012019226.1\|3928223_3928769_+\|hypothetical-protein	gnl\|CDD\|374318	pfam16036, Chalcone_3, Chalcone isomerase-like. Chalcone_3 is a family of largely bacterial members.	4.70581e-16
NZ_CP023641.1\|WP_096827015.1\|3939915_3940830_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270334	cd13616, PBP2_OsmF, Substrate-binding domain OsmF of an osmoregulated ABC-type transporter; the type 2 periplasmic-binding protein fold. Osmoprotectant binding lipoprotein OsmF of an ABC transporter (YehZYXW) from Escherichia coli is predicted to be involved in uptake of compatible solutes such as choline, L-proline and glycine betaine, but the relative substrate preference is not known. To counteract the efflux of water, microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. OsmF belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.16601e-152
NZ_CP023641.1\|WP_003241910.1\|3935483_3937037_-\|sigma-54-dependent-phenylalanine-hydroxylase-transcriptional-regulator-PhhR	gnl\|CDD\|225821	COG3283, TyrR, Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism].	0
NZ_CP023641.1\|WP_004374099.1\|3930542_3931220_+\|DUF4197-domain-containing-protein	gnl\|CDD\|379394	pfam13852, DUF4197, Protein of unknown function (DUF4197). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 228 and 249 amino acids in length.	3.61169e-90
NZ_CP023641.1\|WP_096827010.1\|3926308_3928087_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|185635	PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provisional.	0
NZ_CP023641.1\|WP_004374086.1\|3932349_3934311_-\|acetate--CoA-ligase	gnl\|CDD\|234677	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.	0
NZ_CP023641.1\|WP_036987436.1\|3928777_3929311_+\|DUF3833-domain-containing-protein	gnl\|CDD\|378992	pfam12915, DUF3833, Protein of unknown function (DUF3833). This is a family of uncharacterized proteins found in Proteobacteria.	8.03576e-103
NZ_CP023641.1\|WP_096827020.1\|3943857_3945120_+\|MFS-transporter	gnl\|CDD\|341030	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MFS-type transporter YcaD, Bacillus subtilis MFS-type transporter YfkF, and similar proteins. They are uncharacterized transporters belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.60407e-91
NZ_CP023641.1\|WP_012019228.1\|3929307_3930018_+\|SDR-family-oxidoreductase	gnl\|CDD\|181609	PRK09009, PRK09009, SDR family oxidoreductase.	1.22545e-59
NZ_CP023641.1\|WP_096827008.1\|3925099_3925963_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293825	cd07739, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	1.03098e-97
NZ_CP023641.1\|WP_096827012.1\|3937290_3938076_+\|phenylalanine-4-monooxygenase	gnl\|CDD\|237020	PRK11913, phhA, phenylalanine 4-monooxygenase; Reviewed.	1.07762e-153
NZ_CP023641.1\|WP_003241907.1\|3938197_3938551_+\|4a-hydroxytetrahydrobiopterin-dehydratase	gnl\|CDD\|234845	PRK00823, phhB, pterin-4-alpha-carbinolamine dehydratase; Validated.	1.71356e-43
NZ_CP023641.1\|WP_096827018.1\|3941996_3942935_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224050	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism].	1.54875e-153
NZ_CP023641.1\|WP_096827019.1\|3942934_3943663_+\|ABC-transporter-permease	gnl\|CDD\|224095	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism].	6.18248e-63
NZ_CP023641.1\|WP_096827016.1\|3940839_3942000_+\|ABC-transporter-permease	gnl\|CDD\|224095	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism].	1.41087e-60

>NZ_CP023641.1|WP_003241912.1|3934687_3935248_+|nucleoside-deaminase
MKPEHLALLQQAPAATRADDTWARLCCEQALLALEEGCYAVGAVLIDDAGELLCSGRNQVFAGHYASAAHAEMQVLDQLEAEHPQLDRSGLTLYVSLEPCLMCHGRILLAGIRRVRYLARDRDGGFAARPPRLPRAWANLASRLCVAQAAADPYWIGLAERVIDHLQDRRAMRERVVAAWRGGQAD
>NZ_CP023641.1|WP_004374086.1|3932349_3934311_-|acetate--CoA-ligase
MSAASIYPVSPEAAARTLTDEATYKAMYQQSVVNPEGFWREQGKRIDWIKPYTKVKQTSFDDHHVDIKWFADGTLNVSYNCLDRHLEERGDQIAIIWEGDDPAEHKEITYRELHEQVCKFANALRGQDIHRGDVVTIYMPMIPEAVVAMLACARIGAIHSVVFGGFSPEALAGRIIDCQSKVVITADEGVRGGKKVALKANVDDALTNPETHSVQKVIVVQRTGSEIKWNQHRDIWYEDLMKVAGSVCAPKEMGAEEALFILYTSGSTGKPKGVLHTTGGYLVYASLTHERVFDYRPGEVFWCTADIGWVTGHSYLVYGPLANGATTVMFEGVPNYPDVTRVAKIVDKHKVNILYTAPTAIRAMMAEGKAAVAGADGSSLRLLGSVGEPINPEAWQWYYENVGQSRCPIVDTWWQTETGACLMTPLPGAHAMKPGSAARPFFGVQPALVDNLGNIIEGPAEGNLVIIDSWPGQARTLFGDHDRFVDTYFKTFKGMYFTGDGARRDEDGYWWITGRVDDVLNVSGHRMGTAEIESAMVAHPKVAEAAVVGVPHDIKGQGIYVYVTLNAGEESSEQLRQELRNWVRKEIGPIATPDVIQWAPGLPKTRSGKIMRRILRKIATAEYEALGDISTLADPGVVQHLIDTHRQMQAACA
>NZ_CP023641.1|WP_096827011.1|3931268_3932048_-|EAL-domain-containing-protein
MSNASPSVFPQPFRALGCAECRNAEALGFDFTMAFQLIVDVQENRPFAYEALVRGSQGESAGEVLGRVNDGNRYRFDQACRVKAIEQAATLGLLDIPDCLLSINFLPNAVYRAETCIRATLEAAQRFDFPRERLMFEVTEGEQIHDAEHLKRIFAEYGKQGFTTAIDDFGAGYSGLNLLAEFQPHVLKLDMALTRGIDQDPVRQAIVAGIVLVAQRLDIRIIAEGIENAGERDALSELGIRYMQGYLFARPQLDRLCRP
>NZ_CP023641.1|WP_004374099.1|3930542_3931220_+|DUF4197-domain-containing-protein
MLRLTTFAAGLLLSANVFALSLADLSQKDASGGLKDALIQGAQVAVKQLGTPGGFSNNPDVRIELPGKLGKAAKTMKMMGMGAQVEQLEASMNKAAEAAVPQAQALLVDAVKKMTVADAKAILSGPQDSATQYLNKSSREQIRAKFLPIVKQATDQVGLAQQYNAFAGQAASFGVVDAKSSTVENYVTEQALDGLFEIIAQQEANIRQNPAGAATSLAQKVFGAL
>NZ_CP023641.1|WP_004374102.1|3930025_3930427_-|hypothetical-protein
MNSPLPLRNPCPPGACDCQRDELLERPGADLRVLLLTRHEEQRLLDRLESLQSLEDLERMQQRMFEQLGIRLHIEPSHGEVRSMRGIHMHFDTHPGLCRKTRQSIPAAIRRAMEKKPEIAWRLLDSFDLFGGL
>NZ_CP023641.1|WP_012019228.1|3929307_3930018_+|SDR-family-oxidoreductase
MSEALALSSLGSGYRALVIGASGAIGQAFCQLLRADAGCAQVRELSRASSPALDLEDPASIAAAASALAAEGPYQLILHAAGLLHRPGIAPEKSLAAIEADALQAVFQVNALGPALVLRHFLPLLDKQGAMAMLSAKVGSIGDNRLGGWYAYRASKAALNMLIKTAAIELARSKPKARLLALHPGTVISPLSHPFRGASAARPAEQAAAEMLRVIDSLGPEHSGSFHAYDGQPLPW
>NZ_CP023641.1|WP_036987436.1|3928777_3929311_+|DUF3833-domain-containing-protein
MRVLLILLGSLLLASCGQVPVERYANEKPVLDLPTYFSGPVQAWGMFQDRSGEVIKRFHVDIDSRREGDKLILDERFLYSDGTRQRRVWTLIPDGPGRWIGTADDVVGQAVGEVAGNALRWRYHLNLPVDDTTYVVYFDDWMYLMDDDTMINRSVMSKFGIELGQVTLFFRRGAAQP
>NZ_CP023641.1|WP_012019226.1|3928223_3928769_+|hypothetical-protein
MAERSLHLLSALLLSLALATTSVHASTQSGWRERLPQASLIGSGDFSWFGFSVYNAKLWSPSAKVDFDQPFALELTYRRNISRDTLVDTSLDEIRRIDAQALQAGREAEWARQMRQAFVDVQDGTRITGVYLPGEGCRFYVDGQLQHVVDDPEFARAFFSIWLDPQTRSPKLRAALLGLNR
>NZ_CP023641.1|WP_096827010.1|3926308_3928087_+|acyl-CoA-dehydrogenase
MPSYRAPLRDIRFVFEELLDAYNVLQTLPEHGEFSADLGGAILEEAAKLAENVLAPLNGPGDKQGCQYDPNTYAVRTPDGFKAAYRQFAEGGWTALACTPEFGGQGLPHVLNMLVEEMTCSANLSLGMYPGLTHGAINALTSHGTPEQQAQYLPQLISGEWTGTMCLTEPQCGTDLGLIRTRAVPQADGSFALTGTKIWITGGEHDLVDNIIHLVLAKLPDAPDSVKGISLFLVPKFLADGTRNSAFCGGLEHKMGIKGSATCVMNFEGAKGWLIGEPNKGLSCMFTMMNSARLMVGMQGLGVAESAYQIALGFARERLQSRSITGPKAADKPADPILVHPDVRRMLLRQKVMIEGCRALAYFAGLQQDIAHGAEDAEARTRADDLVQLLTPVVKAFLTDEGFTCANEGLQVLGGSGFTEDWGIEQLVRDSRITRIYEGTNGIQALDLVGRKLALGGGRAVRAFFALIDSWLKSNAEAPHAAAVTQTLRQLQQASLWLASEGSKDPEQAAAAATPYLRLFGLTSLAWLWAQMAQVARRQLDAGSPEMHFYTAKLKSADFFMARILPEAGALLGEIQAGKQTLMAFSDEEFAA
>NZ_CP023641.1|WP_096827008.1|3925099_3925963_+|MBL-fold-metallo-hydrolase
MSLATRFIAGLGLLASAVGALAQPLTLDTYNPREAAVFPVSSTLISGEKEAILVDAQFSSNEAQALIERIRASGKRLTTIFISHGDPDFYFGLDALTRAYPEARVLATAATVAYIEKTRAPKLAYWGPILKDSAPARTLVPEVLHGNLLELEGQRIEVVGHDPQHTSLWIPSLKAVVGGVLTSANIHLWVADAQSVEARQSWLKSLDELEALQPTTLVPGHYLGEPAMNLADLRFTRDYLLALQQELPKASDSQALIAAMKARYPQLQDDSSLELSAKVLKGEMQWP
>NZ_CP023641.1|WP_003241910.1|3935483_3937037_-|sigma-54-dependent-phenylalanine-hydroxylase-transcriptional-regulator-PhhR
MRIKVHCQNRVGILRDILNLLVDYGINVARGEVGGEQGNAIYLHCPNLINLQFQSLRPKFEAIAGVFGVKRVGLMPSERRHLELNALLGALDFPVLSIDMAGSIVAANRSAAQLLGVRVDEVPGMALSRYAEDFDLPELVRANKTRINGLRVKIKGDVFLADIAPLQNEHDDSEALAGAVLTLHRADRVGERIYHVRKQELRGFDSIFQSSKVMAAVVKEARRMAPLDAPLLIEGETGTGKELLARACHLASPRGQSPFMALNCAGLPESMAETELFGYGPGAFEGARPEGKLGLLELTAGGTLFLDGVGEMSPRLQAKLLRFLQDGCFRRVGSDEEVYLDVRVICATQVDLSELCARGEFRQDLYHRLNVLSLHIPPLRECLDGLEPLVEHFLDSASRQIGCPLPKLAPQAFERMAHYHWPGNVRQLENVLFQAVSLCDGGTVKAEHIRLPDYGAPQPLGEFSVEGSLDDILGRFEKAVLERLFRDHPSSRQLGKRLGVSHTTIANKLRQHGLGRE
>NZ_CP023641.1|WP_096827012.1|3937290_3938076_+|phenylalanine-4-monooxygenase
MKTTQYLAREPDDSGFIHYPEAEHQVWNTLIIRQLKVIENRACQEYLDGIEQLGLPLERIPQLGEINRVLEASTGWRVARVPALIPFQTFFELLASKQFPVATFIRTPEELDYLQEPDIFHEIFGHCPLLTNPWFAEFTHTYGKLGLKASKEERVYLARLYWLTIEFGLLDTPAGRRIYGGGILSSPKETLYALSDAPEHQAFDPLEAMRTPYRIDILQPVYFVLPELKRLFELAHEDIMALVHQAMQMGLHAPKFPPKAA
>NZ_CP023641.1|WP_003241907.1|3938197_3938551_+|4a-hydroxytetrahydrobiopterin-dehydratase
MSLAQAQCEACRADAPKVSDEELAELIREIPDWNIEVRGDHMELERVYLFKNFRHALAFTNAVGAIAEEVGHHPALLTEWGKVTVTWWSHEMRGLHRNDFIMAARTDVLAAAAEGRK
>NZ_CP023641.1|WP_096827014.1|3938547_3939744_+|aspartate/tyrosine/aromatic-aminotransferase
MSHFASVARVPGDPILSLMEAYRQDRNAAKLDLGVGVYKDAQGLTPIPRAVKLAEQRLIDSELTKTYVGGHGDAAFAERLSQLVLGADSPLLADQRAAATQTPGGTGALRLAGDFIRHCLPGRGIWLSDPTWPIHETLFAEAGLKVGHYPYVGADNRLDVEAMIAALTHLPKGDVVLLHACCHNPTGFDLGPRDFKRVLEVIKARELLPLIDFAYQGFGDGLEQDAWAVRLFAAELPELLITSSCSKNFGLYRERTGALLVCAGDADKLVDIRSQLAYLARNLWSTPPAHGAAVVAEILGDAELRKLWQDELESMRLRVASLRRGLVEALAPHGLNERFAHIAEQRGMFSYTGLTPVQVQRLREDFSVYMVGSGRANVAGLDATRLEQLAAAIARVCG
>NZ_CP023641.1|WP_096827015.1|3939915_3940830_+|ABC-transporter-substrate-binding-protein
MPRSGLRLIPLLAALVFGSASAAAADPVVVSSKIDTEGAVLGNLIALRLERGGVPVEQRLQLGATNIVRKALIAGEIDLYPEYTGNGAFFFDQADSPVWKDAAKAYATVKRLDREAHDLVWLRPADANNTWAMSVRGDLARAHGLRSLDDLARYLAAGGDFKFAASAEFVESPSALPAFQKAYGFRLEPAQLVVLSGGNTAATLRAAAQGTNGVNAAMSYGTDGGLAALDLQVLSDPRAVQPVYQPAPLVRAEVLTAYPQIETLLRPLFAALSLETLQRLNGEVAVNGADPRQVAETFLDSFEQ
>NZ_CP023641.1|WP_096827016.1|3940839_3942000_+|ABC-transporter-permease
MQPSNRRNPVLLSLALLLLAGLWLGDFASLAANRIVPGQGHGLGDALGLLWALSLSAALLALAALAWRAEPHHLRLAQGLLALLLAQLPLALAWFAARHLDPALPQARIAPGFGVWSQLFVYGLMLIELRQRLGGRLWLIGPLLLLLLSAALIASGAWDSLALMREYAGRSRQFWQALGGHLALVGGTLALSLGLGFALALTIGRWPRTQAALYGLLNLLQTIPSLALFGLLIPVLSYLATQSAALQALGVRGIGWAPALLALVAYSLLPVVRNTQVALQQVDAAVLEAARGMGMSRSQLFTRVRLPLALPVILEGVRVTSIQAIGLAAVAALVGAQGFGTFIFQGLGQGAMDLVLLGALPTIALALLADALFGALAHVLTRRRQA
>NZ_CP023641.1|WP_096827018.1|3941996_3942935_+|ABC-transporter-ATP-binding-protein
MIELDRVSRRFGGVTAVDELSLRIASGEFCVLVGPSGCGKSTTLRMINRLVACSSGQIRIDGQDIATLDERLLRLRIGYAIQNTGLFPHWTVARNIALVPQLLGWPRSRIEARVGELLALLELPAAEFADKYPDQLSGGQAQRVGVARALAGDPEILLMDEPFGALDPITRDNLQNELLRIQSQIRKTIVFVTHDIDEALKLAERIVVMEHGRIVQHGSPQQLLDRPANALVEQLLGQSERGLKRAGLRRVETLMRPPSGEPPAQAIAATASLRQALSHMLSQHCERLAVRDAAGRWVGVVHLLDAVREEAD
>NZ_CP023641.1|WP_096827019.1|3942934_3943663_+|ABC-transporter-permease
MRRWLPPLLWLALLLGASFAMERLEPLLRWLDPDSRQLLYQRASLAALLGRHLLIVACAGGLAVLLGVTAGILVTRSWGRDFLPLASQVASIGQTFPPVAVLALSVPLLGFGALPTIVALLLYGLLPVLRNSLAGLQGVPPAVLEAARGMGMSPLRVLWQVELPLARPVILAGVRTCLTLSIATAALGSTVGASTLGDPLIAGLVNGNNAYLLQGALLIGLLALCVDSLFGALSGPGPRPPG
>NZ_CP023641.1|WP_096827020.1|3943857_3945120_+|MFS-transporter
MWSLIAPISSLLSGVALLLLGNGLLNTLLTLRGVAEGYSTTMLGLIMSGYFVGFLLGTWLAAPLVRRIGHIRAFACCAALAAIAALLHLLLVDPWVWLGLRVLYGLALVTLYMVVESWLNAQTPGEQRGRVFAVYMAVNLGALALAQQLLHLADPVQFTLFALAAVLISAALMPITLTRQVQPSLPEAPRSNLLQLWRIAPLAIAAAGLSGLALGGFWGMAPVYASLAGFDASGVGLMMTATILGGALLQWPIGLYSDSRDRRWVLLWVVALAAGMALLLSLLPAGNALLMAIFVWGGLAFAIYPIAVAQLIDQLHKDEILAGSSGLLMVNGIGAVCGPLLAGLLMEHLGAAALPLYFAVTLGLLAAYCLYRLRHVSDLVSGDAAHFVPMLRTSPTVLELMPDAPPPEPCDTEESPTHAS
>NZ_CP023641.1|WP_096827022.1|3945210_3947469_+|glucosylglycerol-phosphate-synthase
MLLATDLDGTFLAGDPEDRLSLYQTIAAHPEIQLAYVTGRSLEAVLPLLADPTLPQPDFIIADVGATLVHGDSLQPIQPLQSVVDALWPGESQVASAIAAFGLERQDVPQARRCSYFCTPEQAANPALREIADELGCDLLYSAELYLDFLPRGVNKGSSLRALADWLELDHDQVLAAGDTLNDLAMLSASFHGVCVGQSESALLEATANHSRTLHASRPGCGGILEAFAHFGILGEHGIAAERRQAAQPGKAELVMVYHRLPYEEYRGASGKLQRRRPTSPNGIIPTLLSFFGDGRKGSWVAWAVHEDGDEPFDSHTTVDAERYPKLTAARVKLSKEEVDIFYKRFSKEAFWPTLHTFWERATFNEDDWQVYLKVNRAFAERTALEAAEGAIVWLHDYNLWMVPAYLRELRPDLRIAFFHHTYFPSADVFNVLPWRRQIVGSLLQCDYVGFHIPRQVENFVDVARGVFPLKTLSRQNCAPRFITYGCAVGLERMTTELDTGSRRVRLGAHPVGLDIDRVRSALEAPKIRELMAHLREEMQGVKLILSVERLDYTKGILEKLNAYERLLADNPELIGKVTLVSVCVPAAREMTIYDELQSQIEQAVGRINGRFARVGWTPLQFFFRSLPFEEVSAWYAMADVMWITPLRDGLNLVAKEFVAAQGLLGGRGVLVLSEFAGAAAELKGALLTNPHDAADLAQTCYLALNMPASEAKARLRELFDIVCFNDIRRWGEEFLAGVEPQQENKVLELVG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

25554 : 60933

Leptospira_phage(22.22%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003299771.1\|25554_28548_+\|transposase	Tn3 family transposase	Q1MVP5	Enterobacteria_phage	5.7e-259	47.6
WP_003089113.1\|28560_28773_-	hypothetical protein	NA	NA	NA	NA
WP_003150552.1\|28780_29056_-	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_003089115.1\|29068_29419_-	mercury transporter MerT	NA	NA	NA	NA
WP_003089120.1\|29493_29892_+	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_016487046.1\|30250_30928_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_003465041.1\|31009_31600_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_003465039.1\|31690_32392_+	cysteine hydrolase	NA	NA	NA	NA
WP_003465037.1\|32446_32671_+	DUF2798 domain-containing protein	NA	NA	NA	NA
WP_003465034.1\|32951_34004_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003465031.1\|34329_35259_+	ABC transporter permease	Q6GZ02	Mycoplasma_phage	6.3e-07	23.6
WP_003465028.1\|35259_36054_+	ABC transporter permease	NA	NA	NA	NA
WP_003465026.1\|37471_38500_-\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	1.5e-46	36.6
WP_096824895.1\|38524_39151_-	site-specific DNA-methyltransferase	A0A2K5B255	Erysipelothrix_phage	7.3e-15	33.6
WP_045107762.1\|39997_40951_+\|transposase	IS1595-like element ISAchd1 family transposase	NA	NA	NA	NA
WP_003465021.1\|41169_42099_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
WP_003465017.1\|42213_43098_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003830781.1\|43281_43545_-	hypothetical protein	NA	NA	NA	NA
WP_011347519.1\|43396_43954_-	hypothetical protein	NA	NA	NA	NA
WP_003465000.1\|43955_44504_-	cytochrome P460 family protein	NA	NA	NA	NA
WP_020309197.1\|44531_45065_-	hypothetical protein	NA	NA	NA	NA
WP_023444849.1\|45182_46025_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_010465829.1\|46468_47071_+	recombinase family protein	A0A0C4UR34	Shigella_phage	1.6e-40	50.3
WP_024015041.1\|47054_50084_+\|transposase	Tn3 family transposase	NA	NA	NA	NA
WP_003464995.1\|50320_51166_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_003464991.1\|51195_51714_-	DUF417 family protein	NA	NA	NA	NA
WP_078451460.1\|52467_52824_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	4.0e-18	42.9
WP_096824896.1\|52843_54412_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	2.8e-84	36.8
WP_096824897.1\|55668_57156_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	4.2e-53	39.2
WP_010455375.1\|57161_58283_-\|transposase	ISAs1-like element ISPa60 family transposase	NA	NA	NA	NA
WP_096824898.1\|58637_59441_-	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	5.2e-34	36.2
WP_137188585.1\|59433_60933_-\|transposase	IS21 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

3067344 : 3074485

uncultured_Caudovirales_phage(85.71%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003240629.1\|3067344_3068013_+	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	4.4e-95	83.9
WP_090429069.1\|3068148_3068541_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	8.7e-51	76.0
WP_096826552.1\|3068541_3068901_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.1e-34	64.2
WP_003240635.1\|3068900_3069200_+	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	2.7e-28	63.6
WP_096826553.1\|3069196_3069532_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	5.2e-44	78.4
WP_096826554.1\|3069528_3070524_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	2.0e-144	77.6
WP_096826555.1\|3070598_3071597_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_096826556.1\|3071641_3073030_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_003240645.1\|3073204_3074485_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	3.9e-100	55.1

DBSCAN-SWA_3

3663206 : 3688207

Pseudomonas_phage(50.0%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096826846.1\|3663206_3663761_-	glycoside hydrolase family protein	A0A0U1UNS2	Pseudomonas_phage	8.6e-60	64.6
WP_096826847.1\|3663760_3664024_-\|holin	holin	A0A0U1UNM6	Pseudomonas_phage	1.1e-20	68.0
WP_096826848.1\|3664161_3664443_+	hypothetical protein	NA	NA	NA	NA
WP_157761697.1\|3664439_3664910_-	hypothetical protein	NA	NA	NA	NA
WP_157761698.1\|3664993_3665158_-	hypothetical protein	NA	NA	NA	NA
WP_157761699.1\|3665369_3666002_-	hypothetical protein	A0A2I7RQG7	Vibrio_phage	4.5e-49	47.0
WP_096826852.1\|3665986_3666655_-	hypothetical protein	A0A2H4JA27	uncultured_Caudovirales_phage	1.2e-71	70.1
WP_096826854.1\|3666857_3667139_-	hypothetical protein	NA	NA	NA	NA
WP_096826855.1\|3667135_3667663_-	hypothetical protein	A0A2K8I9A9	Pseudomonas_phage	8.7e-54	58.8
WP_096826856.1\|3667659_3668097_-	HNH endonuclease	R4JQQ9	Mycobacterium_phage	2.3e-23	44.1
WP_096826857.1\|3668089_3668401_-	hypothetical protein	NA	NA	NA	NA
WP_096826858.1\|3668393_3668732_-	hypothetical protein	NA	NA	NA	NA
WP_157761700.1\|3668724_3668901_-	hypothetical protein	NA	NA	NA	NA
WP_096826859.1\|3668890_3669640_-	Replication protein P	A0A2D1GNB3	Pseudomonas_phage	1.0e-39	47.4
WP_157761701.1\|3669636_3670407_-	hypothetical protein	A0A0A7RVZ8	Mycobacterium_phage	9.9e-06	36.1
WP_096826861.1\|3670559_3670739_-	hypothetical protein	NA	NA	NA	NA
WP_096826862.1\|3670748_3670949_-	Cro/Cl family transcriptional regulator	A0A0S2SYB8	Pseudomonas_phage	4.3e-06	48.3
WP_096826863.1\|3671058_3671727_+	LexA family transcriptional regulator	H2BDH4	Pseudomonas_virus	9.9e-71	56.9
WP_157761702.1\|3671888_3672209_+	hypothetical protein	NA	NA	NA	NA
WP_096826864.1\|3672413_3672764_+	hypothetical protein	NA	NA	NA	NA
WP_157761703.1\|3672760_3672913_+	hypothetical protein	NA	NA	NA	NA
WP_096826865.1\|3672905_3673121_+	hypothetical protein	NA	NA	NA	NA
WP_157761704.1\|3673113_3673254_+	hypothetical protein	NA	NA	NA	NA
WP_096826866.1\|3673354_3673585_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_096826867.1\|3673597_3674251_+	ERF family protein	A0A1Y0T023	Pseudomonas_phage	3.9e-27	52.6
WP_096826868.1\|3674247_3675906_+	Heme peroxidase	A0A2H4J6P1	uncultured_Caudovirales_phage	9.5e-131	59.2
WP_096826869.1\|3675980_3676565_+	3'-5' exonuclease	A0A0U1W072	Pseudomonas_phage	1.4e-76	72.8
WP_096826870.1\|3676882_3677452_+	hypothetical protein	A0A0A0RNU5	Citrobacter_phage	7.5e-43	44.9
WP_096826871.1\|3677448_3677937_+	hypothetical protein	NA	NA	NA	NA
WP_096826872.1\|3677939_3678350_+	hypothetical protein	NA	NA	NA	NA
WP_096826873.1\|3678360_3679599_+	recombination-associated protein RdgC	L7TP07	Pseudomonas_virus	2.7e-114	68.6
WP_096826874.1\|3679591_3679801_+	Arc family DNA-binding protein	A0A1W6JTB4	Pseudomonas_phage	4.1e-07	56.4
WP_096826875.1\|3679797_3682353_+	DNA methylase N-4	J7I4L6	Pseudomonas_phage	0.0e+00	65.3
WP_096827766.1\|3682358_3682604_+	hypothetical protein	NA	NA	NA	NA
WP_096826876.1\|3682603_3683329_+	hypothetical protein	A0A2H5BFW5	Vibrio_phage	6.0e-53	45.9
WP_096826877.1\|3683957_3684425_+	hypothetical protein	A0A2H4J101	uncultured_Caudovirales_phage	7.7e-46	57.4
WP_096826878.1\|3684519_3685305_+	hypothetical protein	A0A1B0YZY3	Pseudomonas_phage	6.0e-83	57.7
WP_157761705.1\|3685455_3686079_+	hypothetical protein	Q6J1P0	Burkholderia_virus	2.8e-11	44.3
WP_096826880.1\|3686075_3686852_+	DUF4406 domain-containing protein	V5JVS6	Pseudomonas_phage	2.6e-30	74.4
WP_096826881.1\|3686844_3687072_+	hypothetical protein	NA	NA	NA	NA
WP_096826882.1\|3687068_3687665_+	hypothetical protein	J9Q748	Salmonella_phage	6.2e-24	37.7
WP_096827768.1\|3687742_3688207_+	DUF4406 domain-containing protein	A0A2K8I958	Pseudomonas_phage	1.8e-23	56.0

DBSCAN-SWA_4

4875226 : 4939620

Tupanvirus(25.0%)

protease,tRNA,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096827542.1\|4875226_4876663_-\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_096827543.1\|4876659_4877460_-	thermonuclease family protein	NA	NA	NA	NA
WP_004372913.1\|4877486_4877699_-	50S ribosomal protein L31	NA	NA	NA	NA
WP_096827544.1\|4877855_4880075_+	primosomal protein N'	NA	NA	NA	NA
WP_096827545.1\|4880247_4881987_+\|tRNA	arginine--tRNA ligase	A0A2K9L2F0	Tupanvirus	6.4e-85	33.8
WP_011920753.1\|4881987_4882662_+	cell division protein	NA	NA	NA	NA
WP_004372920.1\|4882758_4883289_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_096827546.1\|4883328_4884669_+	HslU--HslV peptidase ATPase subunit	A0A173GFL6	Erwinia_phage	1.4e-44	28.2
WP_011920751.1\|4884750_4885122_+	DUF971 domain-containing protein	NA	NA	NA	NA
WP_004372926.1\|4885510_4887190_+	class II poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA
WP_004372928.1\|4887343_4888201_+	poly(3-hydroxyalkanoate) depolymerase	A0A1L7N183	Ralstonia_phage	3.7e-70	49.6
WP_096827547.1\|4888409_4890092_+	class II poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA
WP_004372933.1\|4890163_4890778_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_096827548.1\|4890860_4891685_-	phasin family protein	NA	NA	NA	NA
WP_004372937.1\|4891695_4892142_-	phasin family protein	NA	NA	NA	NA
WP_004372939.1\|4892313_4892589_-	polyhydroxyalkanoic acid system protein	NA	NA	NA	NA
WP_004372941.1\|4892735_4893506_+	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA
WP_096827549.1\|4893505_4894123_+	SCP2 domain-containing protein	NA	NA	NA	NA
WP_096827550.1\|4894119_4895703_+	ubiquinone biosynthesis regulatory protein kinase UbiB	E5EQ95	Micromonas_sp._RCC1109_virus	2.2e-36	28.3
WP_004372946.1\|4895773_4896172_+	phosphoribosyl-AMP cyclohydrolase	NA	NA	NA	NA
WP_011920745.1\|4896164_4896500_+	phosphoribosyl-ATP diphosphatase	NA	NA	NA	NA
WP_011920744.1\|4896522_4896756_+	twin-arginine translocase TatA/TatE family subunit	NA	NA	NA	NA
WP_011920743.1\|4896759_4897101_+	Sec-independent protein translocase subunit TatB	NA	NA	NA	NA
WP_011920742.1\|4897097_4897892_+	twin-arginine translocase subunit TatC	NA	NA	NA	NA
WP_011920741.1\|4897888_4898599_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_011920740.1\|4898680_4899118_-\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
WP_004372958.1\|4899114_4900086_-	prolyl aminopeptidase	NA	NA	NA	NA
WP_096827551.1\|4900164_4900602_+	hypothetical protein	NA	NA	NA	NA
WP_096827552.1\|4900715_4901258_-	lipocalin family protein	A0A2K9L4H1	Tupanvirus	1.9e-19	38.5
WP_004372964.1\|4901270_4901522_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_096827553.1\|4901594_4902194_-	DUF924 domain-containing protein	NA	NA	NA	NA
WP_004372967.1\|4902197_4903205_-	class 1 fructose-bisphosphatase	A0A1V0SKX4	Klosneuvirus	2.6e-54	37.8
WP_096827554.1\|4903361_4905206_-	autotransporter domain-containing protein	NA	NA	NA	NA
WP_096827555.1\|4907127_4908480_-	DUF3999 domain-containing protein	NA	NA	NA	NA
WP_096827556.1\|4908476_4912100_-	DUF2339 domain-containing protein	NA	NA	NA	NA
WP_011920733.1\|4912324_4912720_+	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_011920732.1\|4912765_4913953_-	gamma-butyrobetaine dioxygenase	NA	NA	NA	NA
WP_096827557.1\|4914042_4914519_-	4-hydroxybenzoyl-CoA thioesterase	NA	NA	NA	NA
WP_011920730.1\|4914627_4915593_-	L-carnitine dehydrogenase	NA	NA	NA	NA
WP_011920729.1\|4915726_4916611_-	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA
WP_004372984.1\|4916712_4917651_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004372985.1\|4917875_4918826_+	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_004372987.1\|4919013_4919991_+	peptidase M19	NA	NA	NA	NA
WP_004372990.1\|4920121_4920652_+	hypothetical protein	NA	NA	NA	NA
WP_004372992.1\|4920750_4922811_+	dimethylglycine demethylation protein DgcA	NA	NA	NA	NA
WP_096827558.1\|4922963_4924925_+	dimethylglycine demethylation protein DgcB	NA	NA	NA	NA
WP_096827559.1\|4924962_4926195_+	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_004372999.1\|4926257_4927031_+	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_004373001.1\|4927056_4927308_+	hypothetical protein	NA	NA	NA	NA
WP_004373003.1\|4927493_4928588_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_096827560.1\|4928661_4928904_-	hypothetical protein	NA	NA	NA	NA
WP_096827561.1\|4929273_4930218_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004373010.1\|4931182_4932388_+	glycine betaine/L-proline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	8.2e-31	39.4
WP_004373012.1\|4932380_4933265_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_004373014.1\|4933292_4934237_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_096827562.1\|4934433_4935285_+	glycine betaine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004373018.1\|4935469_4936060_+	transcriptional regulator BetI	NA	NA	NA	NA
WP_096827563.1\|4936370_4937843_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_096827564.1\|4937922_4939620_+\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	1.1e-49	30.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP023641

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection