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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP017158 Bordetella pertussis strain J165 chromosome, complete genome 5 crisprs csa3,cas3,DinG,DEDDh 0 0 27 0

Results visualization

1. NZ_CP017158
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017158_1 251639-251723 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017158_2 434129-434222 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017158_3 998446-998540 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017158_4 1896970-1897097 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017158_5 3435636-3435745 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 21943 : 79632 52 Synechococcus_phage(25.0%) transposase,tRNA NA
DBSCAN-SWA_2 108474 : 176300 56 Bacillus_phage(22.22%) transposase,tRNA NA
DBSCAN-SWA_3 179682 : 237319 48 Klosneuvirus(14.29%) tRNA,transposase,protease NA
DBSCAN-SWA_4 251733 : 319651 57 Bacillus_phage(22.22%) tRNA,transposase NA
DBSCAN-SWA_5 379173 : 431312 50 Paramecium_bursaria_Chlorella_virus(14.29%) transposase,protease NA
DBSCAN-SWA_6 592514 : 653706 56 uncultured_Mediterranean_phage(40.0%) transposase,protease NA
DBSCAN-SWA_7 659030 : 705220 50 uncultured_Caudovirales_phage(18.18%) terminase,tail,tRNA,transposase NA
DBSCAN-SWA_8 711386 : 765316 46 Planktothrix_phage(50.0%) tRNA,transposase NA
DBSCAN-SWA_9 887905 : 1028473 114 Bacillus_phage(11.11%) transposase NA
DBSCAN-SWA_10 1049424 : 1100086 42 uncultured_Mediterranean_phage(50.0%) transposase,holin,tRNA NA
DBSCAN-SWA_11 1115340 : 1181461 46 Catovirus(25.0%) transposase,tRNA NA
DBSCAN-SWA_12 1321095 : 1389582 58 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_13 1696488 : 1760066 49 Klebsiella_phage(11.11%) transposase,protease NA
DBSCAN-SWA_14 1799179 : 1847194 42 Moraxella_phage(18.18%) transposase,tRNA NA
DBSCAN-SWA_15 1908756 : 1968026 51 Klosneuvirus(40.0%) protease,transposase,tRNA NA
DBSCAN-SWA_16 1978266 : 2022589 45 Staphylococcus_phage(25.0%) transposase NA
DBSCAN-SWA_17 2035795 : 2073285 35 Erysipelothrix_phage(100.0%) transposase NA
DBSCAN-SWA_18 2302159 : 2363507 52 Yellowstone_lake_phycodnavirus(12.5%) transposase,tRNA NA
DBSCAN-SWA_19 2384298 : 2455452 54 Tetraselmis_virus(10.0%) transposase NA
DBSCAN-SWA_20 2540701 : 2591873 47 Salmonella_phage(20.0%) transposase,tRNA NA
DBSCAN-SWA_21 2690168 : 2730837 42 Salmonella_phage(33.33%) transposase,tRNA NA
DBSCAN-SWA_22 2786302 : 2859172 58 Moraxella_phage(16.67%) tRNA,transposase NA
DBSCAN-SWA_23 2862315 : 2929125 50 uncultured_Mediterranean_phage(28.57%) transposase,protease NA
DBSCAN-SWA_24 2959511 : 2998700 37 Planktothrix_phage(50.0%) transposase NA
DBSCAN-SWA_25 3404052 : 3450172 37 Staphylococcus_phage(20.0%) transposase,tRNA NA
DBSCAN-SWA_26 3467916 : 3520323 47 Acinetobacter_phage(37.5%) transposase,tRNA NA
DBSCAN-SWA_27 3537441 : 3591242 46 Catovirus(11.11%) transposase,tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage