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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP017159 Bordetella pertussis strain J226 chromosome, complete genome 5 crisprs csa3,cas3,DinG,DEDDh 0 0 25 0

Results visualization

1. NZ_CP017159
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017159_1 250585-250669 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017159_2 432027-432120 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017159_3 996336-996430 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017159_4 1819777-1819904 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017159_5 3432427-3432536 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 27282 : 70036 42 Synechococcus_phage(50.0%) tRNA,transposase NA
DBSCAN-SWA_2 77634 : 136107 53 Planktothrix_phage(22.22%) tRNA,transposase NA
DBSCAN-SWA_3 164891 : 303014 116 Klosneuvirus(10.53%) tRNA,transposase,protease NA
DBSCAN-SWA_4 390850 : 448359 50 Orpheovirus(14.29%) transposase NA
DBSCAN-SWA_5 589362 : 650551 55 uncultured_Mediterranean_phage(40.0%) transposase,protease NA
DBSCAN-SWA_6 681114 : 720204 48 uncultured_Caudovirales_phage(19.05%) tail,transposase,tRNA,terminase NA
DBSCAN-SWA_7 734891 : 778307 36 Planktothrix_phage(50.0%) transposase NA
DBSCAN-SWA_8 860774 : 935611 57 Leptospira_phage(25.0%) transposase NA
DBSCAN-SWA_9 952820 : 1025314 58 Bacillus_virus(16.67%) transposase NA
DBSCAN-SWA_10 1046265 : 1086907 34 uncultured_Mediterranean_phage(50.0%) tRNA,transposase,holin NA
DBSCAN-SWA_11 1095975 : 1177252 59 Planktothrix_phage(16.67%) tRNA,transposase NA
DBSCAN-SWA_12 1216798 : 1298709 58 Bacillus_virus(25.0%) tRNA,transposase NA
DBSCAN-SWA_13 1418103 : 1472329 44 Salmonella_phage(22.22%) tRNA,transposase NA
DBSCAN-SWA_14 1618209 : 1682046 53 Brazilian_cedratvirus(25.0%) transposase NA
DBSCAN-SWA_15 1831563 : 1963670 119 Klosneuvirus(18.75%) tRNA,transposase,protease NA
DBSCAN-SWA_16 2171059 : 2220712 43 Synechococcus_phage(15.38%) tRNA,transposase NA
DBSCAN-SWA_17 2475968 : 2534211 52 Planktothrix_phage(28.57%) tRNA,transposase NA
DBSCAN-SWA_18 2576488 : 2642988 56 uncultured_Caudovirales_phage(40.0%) transposase NA
DBSCAN-SWA_19 2671102 : 2708514 39 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_20 2807641 : 2871133 55 Diachasmimorpha_longicaudata_entomopoxvirus(20.0%) transposase NA
DBSCAN-SWA_21 2885607 : 2926966 30 uncultured_Mediterranean_phage(40.0%) transposase,protease NA
DBSCAN-SWA_22 2957352 : 3001041 39 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_23 3382030 : 3435770 49 Staphylococcus_phage(33.33%) transposase NA
DBSCAN-SWA_24 3441925 : 3517111 60 Acinetobacter_phage(25.0%) tRNA,transposase NA
DBSCAN-SWA_25 3534228 : 3588028 46 Catovirus(11.11%) tRNA,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage