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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP017160 Bordetella pertussis strain J223 chromosome, complete genome 6 crisprs csa3,cas3,DinG,DEDDh 1 0 21 0

Results visualization

1. NZ_CP017160
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017160_1 250576-250660 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017160_2 432015-432108 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017160_3 996298-996392 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017160_4 1147794-1147927 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017160_5 1820749-1820876 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017160_6 3433339-3433448 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP017160_4 4.1|1147845|32|NZ_CP017160|CRISPRCasFinder 1147845-1147876 32 NZ_CP017160.1 1355654-1355685 0 1.0
NZ_CP017160_4 4.1|1147845|32|NZ_CP017160|CRISPRCasFinder 1147845-1147876 32 NZ_CP017160.1 1820724-1820755 0 1.0
NZ_CP017160_4 4.1|1147845|32|NZ_CP017160|CRISPRCasFinder 1147845-1147876 32 NZ_CP017160.1 1997884-1997915 0 1.0

1. spacer 4.1|1147845|32|NZ_CP017160|CRISPRCasFinder matches to position: 1355654-1355685, mismatch: 0, identity: 1.0

tttgccgccgggccgccccaaggcaaaaaagc	CRISPR spacer
tttgccgccgggccgccccaaggcaaaaaagc	Protospacer
********************************

2. spacer 4.1|1147845|32|NZ_CP017160|CRISPRCasFinder matches to position: 1820724-1820755, mismatch: 0, identity: 1.0

tttgccgccgggccgccccaaggcaaaaaagc	CRISPR spacer
tttgccgccgggccgccccaaggcaaaaaagc	Protospacer
********************************

3. spacer 4.1|1147845|32|NZ_CP017160|CRISPRCasFinder matches to position: 1997884-1997915, mismatch: 0, identity: 1.0

tttgccgccgggccgccccaaggcaaaaaagc	CRISPR spacer
tttgccgccgggccgccccaaggcaaaaaagc	Protospacer
********************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 27282 : 78582 49 Synechococcus_phage(25.0%) tRNA,transposase NA
DBSCAN-SWA_2 215654 : 331318 97 uncultured_Caudovirales_phage(12.5%) tRNA,protease,transposase NA
DBSCAN-SWA_3 390838 : 448346 49 Orpheovirus(16.67%) transposase NA
DBSCAN-SWA_4 619720 : 702036 81 uncultured_Caudovirales_phage(16.67%) tRNA,terminase,tail,transposase NA
DBSCAN-SWA_5 853000 : 913875 50 Vibrio_phage(25.0%) transposase NA
DBSCAN-SWA_6 934622 : 1000521 59 Bacillus_virus(15.38%) transposase NA
DBSCAN-SWA_7 1046222 : 1086861 34 uncultured_Mediterranean_phage(50.0%) tRNA,holin,transposase NA
DBSCAN-SWA_8 1095926 : 1178244 56 Planktothrix_phage(18.18%) tRNA,transposase NA
DBSCAN-SWA_9 1217786 : 1299693 58 Bacillus_virus(25.0%) tRNA,transposase NA
DBSCAN-SWA_10 1419082 : 1471233 44 Salmonella_phage(25.0%) tRNA,transposase NA
DBSCAN-SWA_11 1551762 : 1628247 60 Planktothrix_phage(16.67%) transposase NA
DBSCAN-SWA_12 1832535 : 1891804 51 Klosneuvirus(40.0%) tRNA,protease,transposase NA
DBSCAN-SWA_13 1902044 : 1946363 41 Staphylococcus_phage(25.0%) transposase NA
DBSCAN-SWA_14 2149870 : 2221672 59 Lake_Baikal_phage(10.53%) tRNA,protease,transposase NA
DBSCAN-SWA_15 2476916 : 2535159 52 Planktothrix_phage(28.57%) tRNA,transposase NA
DBSCAN-SWA_16 2577437 : 2643936 55 uncultured_Caudovirales_phage(40.0%) transposase NA
DBSCAN-SWA_17 2839790 : 2912798 52 uncultured_Mediterranean_phage(22.22%) protease,transposase NA
DBSCAN-SWA_18 2922444 : 2982194 53 Vibrio_phage(16.67%) transposase NA
DBSCAN-SWA_19 2988174 : 3051264 54 Bacillus_virus(28.57%) transposase NA
DBSCAN-SWA_20 3402805 : 3549189 112 Acinetobacter_phage(17.65%) tRNA,transposase NA
DBSCAN-SWA_21 4006196 : 4071108 59 Planktothrix_phage(40.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage